Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581220 | XP_013457800.1 | 84.646 | 254 | 34 | 2 | 1 | 251 | 1 | 252 | 1.86e-90 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581220 | sp|Q9FJY5|MPP10_ARATH | 40.756 | 238 | 121 | 6 | 1 | 237 | 1 | 219 | 2.13e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581220 | A0A072UR63 | 84.646 | 254 | 34 | 2 | 1 | 251 | 1 | 252 | 8.88e-91 | 287 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0141660 | Msa0581220 | 0.803153 | 3.993903e-49 | -8.615850e-47 |
| Msa0581220 | Msa0826990 | 0.800579 | 1.348774e-48 | -8.615850e-47 |
| Msa0581220 | Msa1209260 | 0.823297 | 1.494037e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581220 | MtrunA17_Chr4g0058931 | 84.646 | 254 | 34 | 2 | 1 | 251 | 1 | 252 | 1.71e-94 | 287 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581220 | AT5G66540.1 | 40.756 | 238 | 121 | 6 | 1 | 237 | 1 | 219 | 2.16e-25 | 104 |
| Msa0581220 | AT5G66540.2 | 40.756 | 238 | 121 | 6 | 1 | 237 | 1 | 219 | 2.16e-25 | 104 |
Find 58 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATCCAATGGTGATTT+TGG | 0.104584 | 4_1:+86529662 | None:intergenic |
| AGATGAAGAGGCAGAGGATA+TGG | 0.174833 | 4_1:-86528916 | Msa0581220:CDS |
| GTTACGATGCTGAGCAGATT+TGG | 0.331858 | 4_1:-86529628 | Msa0581220:CDS |
| TGATGCAGCACGAGCGGTTT+CGG | 0.332193 | 4_1:+86529718 | None:intergenic |
| TGCACAGTTCAAGGTTCCTT+TGG | 0.341245 | 4_1:-86529522 | Msa0581220:CDS |
| TTGGATGAGCTTCTCGTTGA+TGG | 0.343844 | 4_1:-86529650 | Msa0581220:CDS |
| TTGAACTGTGCAATCTCTTC+CGG | 0.345051 | 4_1:+86529533 | None:intergenic |
| CTGTTCGTTTCGGTGGTGAA+TGG | 0.362433 | 4_1:+86529846 | None:intergenic |
| GTTTCGGAAACCGATGGGTT+TGG | 0.370561 | 4_1:+86529734 | None:intergenic |
| GGAGGTTGCTCTGTTCGTTT+CGG | 0.388281 | 4_1:+86529836 | None:intergenic |
| AACAGAGCAACCTCCATTCA+TGG | 0.404252 | 4_1:-86529828 | Msa0581220:exon |
| GATGAAGAGGCAGAGGATAT+GGG | 0.406030 | 4_1:-86528915 | Msa0581220:CDS |
| TGTTCGTTTCGGTGGTGAAT+GGG | 0.426023 | 4_1:+86529847 | None:intergenic |
| GGAAGATAATTATGAGAAAG+AGG | 0.440594 | 4_1:-86529213 | Msa0581220:CDS |
| TCGTTTGTGTTGACCATGAA+TGG | 0.442858 | 4_1:+86529815 | None:intergenic |
| AGGGTCTGAGAGTAGTGAAT+AGG | 0.443059 | 4_1:+86529690 | None:intergenic |
| GGAAGAGATTGCACAGTTCA+AGG | 0.450319 | 4_1:-86529531 | Msa0581220:CDS |
| TGAAGAAGATGAAGAGGCAG+AGG | 0.463469 | 4_1:-86528922 | Msa0581220:CDS |
| TTATGAGAAAGAGGAGGAGA+TGG | 0.468145 | 4_1:-86529204 | Msa0581220:CDS |
| GTTGAAAAGAAGAAGACAAA+AGG | 0.469612 | 4_1:-86529389 | Msa0581220:CDS |
| GATTTGTTGCAGACGGCGTA+AGG | 0.476397 | 4_1:+86529778 | None:intergenic |
| AAAGAGAAAGTTAAAGGTGG+TGG | 0.487503 | 4_1:-86529290 | Msa0581220:CDS |
| GGGTTTGGAGCGAGCAATGA+AGG | 0.494823 | 4_1:+86529749 | None:intergenic |
| GAAAAGAAGAAGACAAAAGG+AGG | 0.505553 | 4_1:-86529386 | Msa0581220:CDS |
| GACTGAGTATTTAGAGAAGG+AGG | 0.507167 | 4_1:-86529234 | Msa0581220:CDS |
| AAGACAAAAGGAGGAAGTGA+AGG | 0.508745 | 4_1:-86529377 | Msa0581220:CDS |
| GATGAAGATGAAGACGTTGA+GGG | 0.510080 | 4_1:-86529329 | Msa0581220:CDS |
| TGATGAAGATGAAGACGTTG+AGG | 0.510390 | 4_1:-86529330 | Msa0581220:CDS |
| AGTTAAAGGTGGTGGAATTG+AGG | 0.516442 | 4_1:-86529282 | Msa0581220:CDS |
| TGAAGACGTTGAGGGAGATG+AGG | 0.520900 | 4_1:-86529321 | Msa0581220:CDS |
| CTTCTCCCCAAAATCACCAT+TGG | 0.529109 | 4_1:-86529669 | Msa0581220:CDS |
| ATTCAACCGGCGACGAAGAG+TGG | 0.530069 | 4_1:+86529571 | None:intergenic |
| GACGGAGATAAAGAAGAGAG+TGG | 0.531137 | 4_1:-86529486 | Msa0581220:CDS |
| CGAGCGGTTTCGGAAACCGA+TGG | 0.531297 | 4_1:+86529728 | None:intergenic |
| ATTGACTGAGTATTTAGAGA+AGG | 0.540405 | 4_1:-86529237 | Msa0581220:CDS |
| TGAAGATGAAGAAGATGAAG+AGG | 0.542048 | 4_1:-86528928 | Msa0581220:CDS |
| GAGCGGTTTCGGAAACCGAT+GGG | 0.542862 | 4_1:+86529729 | None:intergenic |
| ACGGCGTAAGGCTTCTACGC+CGG | 0.544167 | 4_1:+86529790 | None:intergenic |
| GAAGAGAGTGGAGTTAGAAG+AGG | 0.553516 | 4_1:-86529474 | Msa0581220:CDS |
| GTCTTCTTCGCAACATCCAA+AGG | 0.560154 | 4_1:+86529506 | None:intergenic |
| ATTGCTCGCTCCAAACCCAT+CGG | 0.561906 | 4_1:-86529744 | Msa0581220:CDS |
| GGTTGCTCTGTTCGTTTCGG+TGG | 0.569895 | 4_1:+86529839 | None:intergenic |
| AGACGTTGAGGGAGATGAGG+AGG | 0.570851 | 4_1:-86529318 | Msa0581220:CDS |
| TTTGGATGTTGCGAAGAAGA+CGG | 0.578944 | 4_1:-86529504 | Msa0581220:CDS |
| GTGGATCGATTTGTTGCAGA+CGG | 0.580962 | 4_1:+86529771 | None:intergenic |
| ATAGGCTGGTGAGTTTGAGA+TGG | 0.582433 | 4_1:-86528970 | Msa0581220:intron |
| AGAAGATGATGAACTCGAGA+AGG | 0.607064 | 4_1:-86529159 | Msa0581220:intron |
| ATTGGATGATGAAGATGATG+AGG | 0.610596 | 4_1:-86529426 | Msa0581220:CDS |
| CAGAGGATATGGGAAATGCT+AGG | 0.611431 | 4_1:-86528905 | None:intergenic |
| GTTTGAGATGGACGATGAGG+AGG | 0.630319 | 4_1:-86528958 | Msa0581220:CDS |
| TTTGGAGCGAGCAATGAAGG+TGG | 0.639660 | 4_1:+86529752 | None:intergenic |
| AGATAATTATGAGAAAGAGG+AGG | 0.642904 | 4_1:-86529210 | Msa0581220:CDS |
| TTTGTGTTGACCATGAATGG+AGG | 0.646292 | 4_1:+86529818 | None:intergenic |
| TCAACGAGAAGCTCATCCAA+TGG | 0.658412 | 4_1:+86529653 | None:intergenic |
| ATGGTCAACACAAACGACGC+CGG | 0.658532 | 4_1:-86529809 | Msa0581220:CDS |
| CGACGAAGAGTGGACAAAAG+CGG | 0.658718 | 4_1:+86529581 | None:intergenic |
| GTACTGTGATGCAGCACGAG+CGG | 0.682302 | 4_1:+86529712 | None:intergenic |
| TGAGTTTGAGATGGACGATG+AGG | 0.749868 | 4_1:-86528961 | Msa0581220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAAAACAAACAA+TGG | + | chr4_1:86529682-86529701 | None:intergenic | 15.0% |
| !! | AAAAAAGAAAAAACAAACAA+TGG | + | chr4_1:86529682-86529701 | None:intergenic | 15.0% |
| !!! | TTAGTTCGATAATGTTATTT+TGG | - | chr4_1:86529756-86529775 | Msa0581220:CDS | 20.0% |
| !!! | TACGTTTGTTATATTTACAT+AGG | - | chr4_1:86529788-86529807 | Msa0581220:CDS | 20.0% |
| !!! | TTAGTTCGATAATGTTATTT+TGG | - | chr4_1:86529756-86529775 | Msa0581220:CDS | 20.0% |
| !!! | TACGTTTGTTATATTTACAT+AGG | - | chr4_1:86529788-86529807 | Msa0581220:CDS | 20.0% |
| !!! | TTTTAACAAACTGATTCAAC+CGG | + | chr4_1:86529221-86529240 | None:intergenic | 25.0% |
| !!! | GAATCAGTTTGTTAAAAATC+CGG | - | chr4_1:86529224-86529243 | Msa0581220:CDS | 25.0% |
| ! | GATGAAAAAGAGAAAGTTAA+AGG | - | chr4_1:86529480-86529499 | Msa0581220:CDS | 25.0% |
| !! | TTTGTTATATTTACATAGGC+TGG | - | chr4_1:86529792-86529811 | Msa0581220:CDS | 25.0% |
| !!! | TTTTAACAAACTGATTCAAC+CGG | + | chr4_1:86529221-86529240 | None:intergenic | 25.0% |
| !!! | GAATCAGTTTGTTAAAAATC+CGG | - | chr4_1:86529224-86529243 | Msa0581220:CDS | 25.0% |
| ! | GATGAAAAAGAGAAAGTTAA+AGG | - | chr4_1:86529480-86529499 | Msa0581220:CDS | 25.0% |
| !! | TTTGTTATATTTACATAGGC+TGG | - | chr4_1:86529792-86529811 | Msa0581220:CDS | 25.0% |
| GTTGAAAAGAAGAAGACAAA+AGG | - | chr4_1:86529387-86529406 | Msa0581220:CDS | 30.0% | |
| GAAAAAGAGAAAGTTAAAGG+TGG | - | chr4_1:86529483-86529502 | Msa0581220:CDS | 30.0% | |
| ATTGACTGAGTATTTAGAGA+AGG | - | chr4_1:86529539-86529558 | Msa0581220:CDS | 30.0% | |
| GGAAGATAATTATGAGAAAG+AGG | - | chr4_1:86529563-86529582 | Msa0581220:CDS | 30.0% | |
| AGATAATTATGAGAAAGAGG+AGG | - | chr4_1:86529566-86529585 | Msa0581220:CDS | 30.0% | |
| TTATGTTACATTGATCGAGT+AGG | - | chr4_1:86529714-86529733 | Msa0581220:CDS | 30.0% | |
| GTTGAAAAGAAGAAGACAAA+AGG | - | chr4_1:86529387-86529406 | Msa0581220:CDS | 30.0% | |
| GAAAAAGAGAAAGTTAAAGG+TGG | - | chr4_1:86529483-86529502 | Msa0581220:CDS | 30.0% | |
| ATTGACTGAGTATTTAGAGA+AGG | - | chr4_1:86529539-86529558 | Msa0581220:CDS | 30.0% | |
| GGAAGATAATTATGAGAAAG+AGG | - | chr4_1:86529563-86529582 | Msa0581220:CDS | 30.0% | |
| AGATAATTATGAGAAAGAGG+AGG | - | chr4_1:86529566-86529585 | Msa0581220:CDS | 30.0% | |
| TTATGTTACATTGATCGAGT+AGG | - | chr4_1:86529714-86529733 | Msa0581220:CDS | 30.0% | |
| !! | AGAAAGCGATGATTTTGATG+AGG | - | chr4_1:86529326-86529345 | Msa0581220:CDS | 35.0% |
| !! | CGATGATTTTGATGAGGAAT+TGG | - | chr4_1:86529332-86529351 | Msa0581220:CDS | 35.0% |
| ATTGGATGATGAAGATGATG+AGG | - | chr4_1:86529350-86529369 | Msa0581220:CDS | 35.0% | |
| ! | GATGATGAGGATGATTTTGA+AGG | - | chr4_1:86529363-86529382 | Msa0581220:CDS | 35.0% |
| GAAAAGAAGAAGACAAAAGG+AGG | - | chr4_1:86529390-86529409 | Msa0581220:CDS | 35.0% | |
| AAAGAGAAAGTTAAAGGTGG+TGG | - | chr4_1:86529486-86529505 | Msa0581220:CDS | 35.0% | |
| TGAAGATGAAGAAGATGAAG+AGG | - | chr4_1:86529848-86529867 | Msa0581220:five_prime_UTR | 35.0% | |
| !! | AGAAAGCGATGATTTTGATG+AGG | - | chr4_1:86529326-86529345 | Msa0581220:CDS | 35.0% |
| !! | CGATGATTTTGATGAGGAAT+TGG | - | chr4_1:86529332-86529351 | Msa0581220:CDS | 35.0% |
| ATTGGATGATGAAGATGATG+AGG | - | chr4_1:86529350-86529369 | Msa0581220:CDS | 35.0% | |
| ! | GATGATGAGGATGATTTTGA+AGG | - | chr4_1:86529363-86529382 | Msa0581220:CDS | 35.0% |
| GAAAAGAAGAAGACAAAAGG+AGG | - | chr4_1:86529390-86529409 | Msa0581220:CDS | 35.0% | |
| AAAGAGAAAGTTAAAGGTGG+TGG | - | chr4_1:86529486-86529505 | Msa0581220:CDS | 35.0% | |
| TGAAGATGAAGAAGATGAAG+AGG | - | chr4_1:86529848-86529867 | Msa0581220:five_prime_UTR | 35.0% | |
| ! | TTTGTGTTGACCATGAATGG+AGG | + | chr4_1:86528961-86528980 | None:intergenic | 40.0% |
| ! | TCGTTTGTGTTGACCATGAA+TGG | + | chr4_1:86528964-86528983 | None:intergenic | 40.0% |
| !! | AATGGTGATTTTGGGGAGAA+GGG | + | chr4_1:86529108-86529127 | None:intergenic | 40.0% |
| ! | CTCATCCAATGGTGATTTTG+GGG | + | chr4_1:86529115-86529134 | None:intergenic | 40.0% |
| ! | GCTCATCCAATGGTGATTTT+GGG | + | chr4_1:86529116-86529135 | None:intergenic | 40.0% |
| ! | AGCTCATCCAATGGTGATTT+TGG | + | chr4_1:86529117-86529136 | None:intergenic | 40.0% |
| TTGAACTGTGCAATCTCTTC+CGG | + | chr4_1:86529246-86529265 | None:intergenic | 40.0% | |
| TTTGGATGTTGCGAAGAAGA+CGG | - | chr4_1:86529272-86529291 | Msa0581220:CDS | 40.0% | |
| AAGACAAAAGGAGGAAGTGA+AGG | - | chr4_1:86529399-86529418 | Msa0581220:CDS | 40.0% | |
| TGATGAAGATGAAGACGTTG+AGG | - | chr4_1:86529446-86529465 | Msa0581220:CDS | 40.0% | |
| GATGAAGATGAAGACGTTGA+GGG | - | chr4_1:86529447-86529466 | Msa0581220:CDS | 40.0% | |
| !! | AGTTAAAGGTGGTGGAATTG+AGG | - | chr4_1:86529494-86529513 | Msa0581220:CDS | 40.0% |
| GACTGAGTATTTAGAGAAGG+AGG | - | chr4_1:86529542-86529561 | Msa0581220:CDS | 40.0% | |
| TTATGAGAAAGAGGAGGAGA+TGG | - | chr4_1:86529572-86529591 | Msa0581220:CDS | 40.0% | |
| AGAAGATGATGAACTCGAGA+AGG | - | chr4_1:86529617-86529636 | Msa0581220:CDS | 40.0% | |
| GAGATTGATTGCTCTTTGCT+TGG | - | chr4_1:86529641-86529660 | Msa0581220:CDS | 40.0% | |
| !! | TTGCTTGGCTTGGTTGTTAT+TGG | - | chr4_1:86529656-86529675 | Msa0581220:CDS | 40.0% |
| ! | TTTGTGTTGACCATGAATGG+AGG | + | chr4_1:86528961-86528980 | None:intergenic | 40.0% |
| ! | TCGTTTGTGTTGACCATGAA+TGG | + | chr4_1:86528964-86528983 | None:intergenic | 40.0% |
| !! | AATGGTGATTTTGGGGAGAA+GGG | + | chr4_1:86529108-86529127 | None:intergenic | 40.0% |
| ! | CTCATCCAATGGTGATTTTG+GGG | + | chr4_1:86529115-86529134 | None:intergenic | 40.0% |
| ! | GCTCATCCAATGGTGATTTT+GGG | + | chr4_1:86529116-86529135 | None:intergenic | 40.0% |
| ! | AGCTCATCCAATGGTGATTT+TGG | + | chr4_1:86529117-86529136 | None:intergenic | 40.0% |
| TTGAACTGTGCAATCTCTTC+CGG | + | chr4_1:86529246-86529265 | None:intergenic | 40.0% | |
| TTTGGATGTTGCGAAGAAGA+CGG | - | chr4_1:86529272-86529291 | Msa0581220:CDS | 40.0% | |
| AAGACAAAAGGAGGAAGTGA+AGG | - | chr4_1:86529399-86529418 | Msa0581220:CDS | 40.0% | |
| TGATGAAGATGAAGACGTTG+AGG | - | chr4_1:86529446-86529465 | Msa0581220:CDS | 40.0% | |
| GATGAAGATGAAGACGTTGA+GGG | - | chr4_1:86529447-86529466 | Msa0581220:CDS | 40.0% | |
| !! | AGTTAAAGGTGGTGGAATTG+AGG | - | chr4_1:86529494-86529513 | Msa0581220:CDS | 40.0% |
| GACTGAGTATTTAGAGAAGG+AGG | - | chr4_1:86529542-86529561 | Msa0581220:CDS | 40.0% | |
| TTATGAGAAAGAGGAGGAGA+TGG | - | chr4_1:86529572-86529591 | Msa0581220:CDS | 40.0% | |
| AGAAGATGATGAACTCGAGA+AGG | - | chr4_1:86529617-86529636 | Msa0581220:CDS | 40.0% | |
| GAGATTGATTGCTCTTTGCT+TGG | - | chr4_1:86529641-86529660 | Msa0581220:CDS | 40.0% | |
| !! | TTGCTTGGCTTGGTTGTTAT+TGG | - | chr4_1:86529656-86529675 | Msa0581220:CDS | 40.0% |
| !! | TCGGTGGTGAATGGGTTTTA+GGG | + | chr4_1:86528924-86528943 | None:intergenic | 45.0% |
| !! | TTCGGTGGTGAATGGGTTTT+AGG | + | chr4_1:86528925-86528944 | None:intergenic | 45.0% |
| TGTTCGTTTCGGTGGTGAAT+GGG | + | chr4_1:86528932-86528951 | None:intergenic | 45.0% | |
| AACAGAGCAACCTCCATTCA+TGG | - | chr4_1:86528948-86528967 | Msa0581220:CDS | 45.0% | |
| !! | GTGGATCGATTTGTTGCAGA+CGG | + | chr4_1:86529008-86529027 | None:intergenic | 45.0% |
| AGGGTCTGAGAGTAGTGAAT+AGG | + | chr4_1:86529089-86529108 | None:intergenic | 45.0% | |
| !! | CAATGGTGATTTTGGGGAGA+AGG | + | chr4_1:86529109-86529128 | None:intergenic | 45.0% |
| CTTCTCCCCAAAATCACCAT+TGG | - | chr4_1:86529107-86529126 | Msa0581220:intron | 45.0% | |
| TCAACGAGAAGCTCATCCAA+TGG | + | chr4_1:86529126-86529145 | None:intergenic | 45.0% | |
| TTGGATGAGCTTCTCGTTGA+TGG | - | chr4_1:86529126-86529145 | Msa0581220:intron | 45.0% | |
| GTTACGATGCTGAGCAGATT+TGG | - | chr4_1:86529148-86529167 | Msa0581220:intron | 45.0% | |
| GGAAGAGATTGCACAGTTCA+AGG | - | chr4_1:86529245-86529264 | Msa0581220:CDS | 45.0% | |
| TGCACAGTTCAAGGTTCCTT+TGG | - | chr4_1:86529254-86529273 | Msa0581220:CDS | 45.0% | |
| GTCTTCTTCGCAACATCCAA+AGG | + | chr4_1:86529273-86529292 | None:intergenic | 45.0% | |
| GACGGAGATAAAGAAGAGAG+TGG | - | chr4_1:86529290-86529309 | Msa0581220:CDS | 45.0% | |
| GAAGAGAGTGGAGTTAGAAG+AGG | - | chr4_1:86529302-86529321 | Msa0581220:CDS | 45.0% | |
| TGATTGCTCTTTGCTTGGCT+TGG | - | chr4_1:86529646-86529665 | Msa0581220:CDS | 45.0% | |
| ATAGGCTGGTGAGTTTGAGA+TGG | - | chr4_1:86529806-86529825 | Msa0581220:CDS | 45.0% | |
| ! | TGAGTTTGAGATGGACGATG+AGG | - | chr4_1:86529815-86529834 | Msa0581220:exon | 45.0% |
| TGAAGAAGATGAAGAGGCAG+AGG | - | chr4_1:86529854-86529873 | Msa0581220:five_prime_UTR | 45.0% | |
| AGATGAAGAGGCAGAGGATA+TGG | - | chr4_1:86529860-86529879 | Msa0581220:five_prime_UTR | 45.0% | |
| GATGAAGAGGCAGAGGATAT+GGG | - | chr4_1:86529861-86529880 | Msa0581220:five_prime_UTR | 45.0% | |
| !! | TCGGTGGTGAATGGGTTTTA+GGG | + | chr4_1:86528924-86528943 | None:intergenic | 45.0% |
| !! | TTCGGTGGTGAATGGGTTTT+AGG | + | chr4_1:86528925-86528944 | None:intergenic | 45.0% |
| TGTTCGTTTCGGTGGTGAAT+GGG | + | chr4_1:86528932-86528951 | None:intergenic | 45.0% | |
| AACAGAGCAACCTCCATTCA+TGG | - | chr4_1:86528948-86528967 | Msa0581220:CDS | 45.0% | |
| !! | GTGGATCGATTTGTTGCAGA+CGG | + | chr4_1:86529008-86529027 | None:intergenic | 45.0% |
| AGGGTCTGAGAGTAGTGAAT+AGG | + | chr4_1:86529089-86529108 | None:intergenic | 45.0% | |
| !! | CAATGGTGATTTTGGGGAGA+AGG | + | chr4_1:86529109-86529128 | None:intergenic | 45.0% |
| CTTCTCCCCAAAATCACCAT+TGG | - | chr4_1:86529107-86529126 | Msa0581220:intron | 45.0% | |
| TCAACGAGAAGCTCATCCAA+TGG | + | chr4_1:86529126-86529145 | None:intergenic | 45.0% | |
| TTGGATGAGCTTCTCGTTGA+TGG | - | chr4_1:86529126-86529145 | Msa0581220:intron | 45.0% | |
| GTTACGATGCTGAGCAGATT+TGG | - | chr4_1:86529148-86529167 | Msa0581220:intron | 45.0% | |
| GGAAGAGATTGCACAGTTCA+AGG | - | chr4_1:86529245-86529264 | Msa0581220:CDS | 45.0% | |
| TGCACAGTTCAAGGTTCCTT+TGG | - | chr4_1:86529254-86529273 | Msa0581220:CDS | 45.0% | |
| GTCTTCTTCGCAACATCCAA+AGG | + | chr4_1:86529273-86529292 | None:intergenic | 45.0% | |
| GACGGAGATAAAGAAGAGAG+TGG | - | chr4_1:86529290-86529309 | Msa0581220:CDS | 45.0% | |
| GAAGAGAGTGGAGTTAGAAG+AGG | - | chr4_1:86529302-86529321 | Msa0581220:CDS | 45.0% | |
| TGATTGCTCTTTGCTTGGCT+TGG | - | chr4_1:86529646-86529665 | Msa0581220:CDS | 45.0% | |
| ATAGGCTGGTGAGTTTGAGA+TGG | - | chr4_1:86529806-86529825 | Msa0581220:CDS | 45.0% | |
| ! | TGAGTTTGAGATGGACGATG+AGG | - | chr4_1:86529815-86529834 | Msa0581220:exon | 45.0% |
| TGAAGAAGATGAAGAGGCAG+AGG | - | chr4_1:86529854-86529873 | Msa0581220:five_prime_UTR | 45.0% | |
| AGATGAAGAGGCAGAGGATA+TGG | - | chr4_1:86529860-86529879 | Msa0581220:five_prime_UTR | 45.0% | |
| GATGAAGAGGCAGAGGATAT+GGG | - | chr4_1:86529861-86529880 | Msa0581220:five_prime_UTR | 45.0% | |
| CTGTTCGTTTCGGTGGTGAA+TGG | + | chr4_1:86528933-86528952 | None:intergenic | 50.0% | |
| GGAGGTTGCTCTGTTCGTTT+CGG | + | chr4_1:86528943-86528962 | None:intergenic | 50.0% | |
| ATGGTCAACACAAACGACGC+CGG | - | chr4_1:86528967-86528986 | Msa0581220:CDS | 50.0% | |
| !! | GATTTGTTGCAGACGGCGTA+AGG | + | chr4_1:86529001-86529020 | None:intergenic | 50.0% |
| ! | TTTGGAGCGAGCAATGAAGG+TGG | + | chr4_1:86529027-86529046 | None:intergenic | 50.0% |
| ATTGCTCGCTCCAAACCCAT+CGG | - | chr4_1:86529032-86529051 | Msa0581220:intron | 50.0% | |
| ! | GTTTCGGAAACCGATGGGTT+TGG | + | chr4_1:86529045-86529064 | None:intergenic | 50.0% |
| CGACGAAGAGTGGACAAAAG+CGG | + | chr4_1:86529198-86529217 | None:intergenic | 50.0% | |
| ! | TTTTGTCCACTCTTCGTCGC+CGG | - | chr4_1:86529199-86529218 | Msa0581220:CDS | 50.0% |
| TGAAGACGTTGAGGGAGATG+AGG | - | chr4_1:86529455-86529474 | Msa0581220:CDS | 50.0% | |
| ! | GTTTGAGATGGACGATGAGG+AGG | - | chr4_1:86529818-86529837 | Msa0581220:exon | 50.0% |
| CTGTTCGTTTCGGTGGTGAA+TGG | + | chr4_1:86528933-86528952 | None:intergenic | 50.0% | |
| GGAGGTTGCTCTGTTCGTTT+CGG | + | chr4_1:86528943-86528962 | None:intergenic | 50.0% | |
| ATGGTCAACACAAACGACGC+CGG | - | chr4_1:86528967-86528986 | Msa0581220:CDS | 50.0% | |
| !! | GATTTGTTGCAGACGGCGTA+AGG | + | chr4_1:86529001-86529020 | None:intergenic | 50.0% |
| ! | TTTGGAGCGAGCAATGAAGG+TGG | + | chr4_1:86529027-86529046 | None:intergenic | 50.0% |
| ATTGCTCGCTCCAAACCCAT+CGG | - | chr4_1:86529032-86529051 | Msa0581220:intron | 50.0% | |
| ! | GTTTCGGAAACCGATGGGTT+TGG | + | chr4_1:86529045-86529064 | None:intergenic | 50.0% |
| CGACGAAGAGTGGACAAAAG+CGG | + | chr4_1:86529198-86529217 | None:intergenic | 50.0% | |
| ! | TTTTGTCCACTCTTCGTCGC+CGG | - | chr4_1:86529199-86529218 | Msa0581220:CDS | 50.0% |
| TGAAGACGTTGAGGGAGATG+AGG | - | chr4_1:86529455-86529474 | Msa0581220:CDS | 50.0% | |
| ! | GTTTGAGATGGACGATGAGG+AGG | - | chr4_1:86529818-86529837 | Msa0581220:exon | 50.0% |
| GGTTGCTCTGTTCGTTTCGG+TGG | + | chr4_1:86528940-86528959 | None:intergenic | 55.0% | |
| ! | GGGTTTGGAGCGAGCAATGA+AGG | + | chr4_1:86529030-86529049 | None:intergenic | 55.0% |
| GAGCGGTTTCGGAAACCGAT+GGG | + | chr4_1:86529050-86529069 | None:intergenic | 55.0% | |
| TGATGCAGCACGAGCGGTTT+CGG | + | chr4_1:86529061-86529080 | None:intergenic | 55.0% | |
| GTACTGTGATGCAGCACGAG+CGG | + | chr4_1:86529067-86529086 | None:intergenic | 55.0% | |
| ATTCAACCGGCGACGAAGAG+TGG | + | chr4_1:86529208-86529227 | None:intergenic | 55.0% | |
| AGACGTTGAGGGAGATGAGG+AGG | - | chr4_1:86529458-86529477 | Msa0581220:CDS | 55.0% | |
| GGTTGCTCTGTTCGTTTCGG+TGG | + | chr4_1:86528940-86528959 | None:intergenic | 55.0% | |
| ! | GGGTTTGGAGCGAGCAATGA+AGG | + | chr4_1:86529030-86529049 | None:intergenic | 55.0% |
| GAGCGGTTTCGGAAACCGAT+GGG | + | chr4_1:86529050-86529069 | None:intergenic | 55.0% | |
| TGATGCAGCACGAGCGGTTT+CGG | + | chr4_1:86529061-86529080 | None:intergenic | 55.0% | |
| GTACTGTGATGCAGCACGAG+CGG | + | chr4_1:86529067-86529086 | None:intergenic | 55.0% | |
| ATTCAACCGGCGACGAAGAG+TGG | + | chr4_1:86529208-86529227 | None:intergenic | 55.0% | |
| AGACGTTGAGGGAGATGAGG+AGG | - | chr4_1:86529458-86529477 | Msa0581220:CDS | 55.0% | |
| ACGGCGTAAGGCTTCTACGC+CGG | + | chr4_1:86528989-86529008 | None:intergenic | 60.0% | |
| CGAGCGGTTTCGGAAACCGA+TGG | + | chr4_1:86529051-86529070 | None:intergenic | 60.0% | |
| ACGGCGTAAGGCTTCTACGC+CGG | + | chr4_1:86528989-86529008 | None:intergenic | 60.0% | |
| CGAGCGGTTTCGGAAACCGA+TGG | + | chr4_1:86529051-86529070 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86528908 | 86529890 | 86528908 | ID=Msa0581220;Name=Msa0581220 |
| chr4_1 | mRNA | 86528908 | 86529890 | 86528908 | ID=Msa0581220-mRNA-1;Parent=Msa0581220;Name=Msa0581220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=59|1|0.5|1|1|0.5|2|0|251 |
| chr4_1 | exon | 86528908 | 86528988 | 86528908 | ID=Msa0581220-mRNA-1:exon:32001;Parent=Msa0581220-mRNA-1 |
| chr4_1 | exon | 86529160 | 86529890 | 86529160 | ID=Msa0581220-mRNA-1:exon:32000;Parent=Msa0581220-mRNA-1 |
| chr4_1 | five_prime_UTR | 86529832 | 86529890 | 86529832 | ID=Msa0581220-mRNA-1:five_prime_utr;Parent=Msa0581220-mRNA-1 |
| chr4_1 | CDS | 86529160 | 86529831 | 86529160 | ID=Msa0581220-mRNA-1:cds;Parent=Msa0581220-mRNA-1 |
| chr4_1 | CDS | 86528908 | 86528988 | 86528908 | ID=Msa0581220-mRNA-1:cds;Parent=Msa0581220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
