AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582430 MtrunA17_Chr4g0028821 89.462 465 42 1 1 458 1 465 0.0 837
Msa0582430 MtrunA17_Chr2g0326951 57.463 134 46 3 243 372 39 165 1.94e-41 145
Msa0582430 MtrunA17_Chr2g0326991 47.090 189 87 4 243 420 315 501 1.87e-38 149
Msa0582430 MtrunA17_Chr7g0264371 48.889 90 46 0 288 377 973 1062 2.03e-21 98.2
Msa0582430 MtrunA17_Chr2g0327001 38.235 170 98 4 72 240 344 507 1.60e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582430 AT1G08060.3 45.690 116 63 0 280 395 951 1066 4.03e-26 112
Msa0582430 AT1G08060.1 45.690 116 63 0 280 395 950 1065 4.14e-26 112
Msa0582430 AT1G08060.2 45.690 116 63 0 280 395 950 1065 4.14e-26 112

Find 137 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGTTTCTTTAGTATTTC+TGG 0.059197 4_2:-929504 None:intergenic
ATTTCTATTTCTGGTGAATT+AGG 0.093495 4_2:+922054 Msa0582430:five_prime_UTR
GCTGCATCCCTTCTCGATTC+TGG 0.157915 4_2:-930205 None:intergenic
TTTAGTATTTCTGGAAATTC+TGG 0.174741 4_2:-929495 None:intergenic
CAATCAGACTGAACTCTTTC+AGG 0.183409 4_2:-923377 None:intergenic
ACTTACATTGTTGAAGAAAA+TGG 0.209337 4_2:+922114 Msa0582430:exon
ACATTGCAGCAAAGCTTTAC+AGG 0.264821 4_2:-923599 None:intergenic
GTCAAACCTAGTTTCTTCTA+AGG 0.267438 4_2:+929824 Msa0582430:three_prime_UTR
TTTCTATTTCTGGTGAATTA+GGG 0.306249 4_2:+922055 Msa0582430:five_prime_UTR
TAGCACTTACCTTATCCTTT+TGG 0.312284 4_2:-923642 None:intergenic
TCACCCATGTTGCTATCTTC+TGG 0.329264 4_2:-923143 None:intergenic
TCTGCAAAGAAAGCGACTTT+AGG 0.330959 4_2:+923305 Msa0582430:CDS
TCTTCTTCTTCTTTAGAGCT+TGG 0.343098 4_2:-929656 None:intergenic
CTTCTTCTTCTTTAGAGCTT+GGG 0.347530 4_2:-929655 None:intergenic
ATTCAAATGAAAGTTTGATT+AGG 0.347565 4_2:+923444 Msa0582430:CDS
AACATATGGTTTGTTGAAAA+CGG 0.358260 4_2:-921961 None:intergenic
CTGCCTTGCTTCCAAATGTT+CGG 0.364508 4_2:-929769 None:intergenic
TGCTCTAGAGACCGAACATT+TGG 0.365866 4_2:+929758 Msa0582430:three_prime_UTR
CTGTTGAAAATGAGAAAATA+AGG 0.373598 4_2:+927198 Msa0582430:CDS
TGAAATTAATGCAATGCTTT+GGG 0.374374 4_2:+929337 Msa0582430:CDS
TCACAGAGCTTTGCTATCTC+TGG 0.378175 4_2:-927254 None:intergenic
TCACTGACCTTCCATGCTTC+TGG 0.381991 4_2:-926199 None:intergenic
CTGCATCCCTTCTCGATTCT+GGG 0.382015 4_2:-930204 None:intergenic
AAAATGCGAGTAATACTATA+TGG 0.385868 4_2:-921994 None:intergenic
AAGGCCTGTAATATTGATAC+TGG 0.387007 4_2:-927878 None:intergenic
TTTGATGATTCAGAAGCCTT+TGG 0.391055 4_2:-929413 None:intergenic
ACATCGCAAACGTTAGCAAT+TGG 0.391623 4_2:+923413 Msa0582430:CDS
ACATATGGTTTGTTGAAAAC+GGG 0.392730 4_2:-921960 None:intergenic
TTCAAAGGAGCTGCATTCTC+TGG 0.394965 4_2:-930264 None:intergenic
AGAACCAGTATCAATATTAC+AGG 0.397704 4_2:+927874 Msa0582430:CDS
ATGAAATTAATGCAATGCTT+TGG 0.399337 4_2:+929336 Msa0582430:CDS
AGGCTTCTGAATCATCAAAC+AGG 0.401136 4_2:+929417 Msa0582430:CDS
CATCGCAAACGTTAGCAATT+GGG 0.402485 4_2:+923414 Msa0582430:CDS
CAAGTTCCTTAGAAGAAACT+AGG 0.403156 4_2:-929830 None:intergenic
GCAGGATAATGTCAAGAGTA+TGG 0.408793 4_2:+927805 Msa0582430:intron
TTTGAGGAGGCGAGGATTGA+GGG 0.411567 4_2:-921936 None:intergenic
AGTGTCTTGCCGACCATAAC+TGG 0.420519 4_2:+930159 Msa0582430:three_prime_UTR
ATCAGTAGTTCTAACTGTGC+TGG 0.423150 4_2:-930238 None:intergenic
ACAGGCCTTTCAATTATCTC+TGG 0.428920 4_2:+927892 Msa0582430:CDS
TCGATTCTGGGCACCATGAC+TGG 0.441134 4_2:-930192 None:intergenic
ATCTTCTTGTTAGATGAAGA+AGG 0.452111 4_2:-922145 None:intergenic
GGAAGAGGAGCTGCATTCTC+TGG 0.455197 4_2:-930005 None:intergenic
AAGCTTCAGTGTCAAGTTTG+TGG 0.456682 4_2:-929259 None:intergenic
TGGTATCTGTCCACCAGTTA+TGG 0.457022 4_2:-930172 None:intergenic
AAGGCAAAGCGACGGATATG+AGG 0.461337 4_2:+923246 Msa0582430:CDS
AGAAGAAGAACGAGATGCTC+AGG 0.461413 4_2:+929670 Msa0582430:three_prime_UTR
TTGTTAGATGAAGAAGGACT+TGG 0.466177 4_2:-922139 None:intergenic
GTCGCTTTGCCTTCTTCAGA+TGG 0.471539 4_2:-923236 None:intergenic
AGAGCTACTTCATATGCAAC+AGG 0.473257 4_2:+929547 Msa0582430:CDS
GAAACGTTTCATCTTCCAAT+GGG 0.481540 4_2:+922218 Msa0582430:CDS
CAAGTGTGGCCTGCACTCAC+AGG 0.481890 4_2:-929955 None:intergenic
ATTTGAGGAGGCGAGGATTG+AGG 0.483853 4_2:-921937 None:intergenic
AAATGTGTTGTAAATGAAAA+CGG 0.484244 4_2:+923467 Msa0582430:CDS
CAGCTGCAGCCTGTGAGTGC+AGG 0.485333 4_2:+929946 Msa0582430:three_prime_UTR
AGAAACTTGTGAGTTGAAGA+TGG 0.490603 4_2:-930133 None:intergenic
TCAGTCTGATTGCCATGAAA+AGG 0.490949 4_2:+923388 Msa0582430:CDS
GATAATGTCAAGAGTATGGT+TGG 0.497551 4_2:+927809 Msa0582430:CDS
ATATCTGATGGAGGTTTAGA+CGG 0.503460 4_2:+930037 Msa0582430:three_prime_UTR
GATCTTCTCAAAGGAGGACT+AGG 0.503621 4_2:-922184 None:intergenic
TCAACAAATCAAATATCTGA+TGG 0.508715 4_2:+930294 Msa0582430:three_prime_UTR
TGCAATGCTTTGGGATCTGA+AGG 0.509459 4_2:+929346 Msa0582430:CDS
AGACCAGTGGGCCTTCCAAA+AGG 0.513401 4_2:+923627 Msa0582430:CDS
CCACTGCCAGTGAGTTGAGT+AGG 0.515012 4_2:+929919 Msa0582430:three_prime_UTR
GTGGGCCTTCCAAAAGGATA+AGG 0.517697 4_2:+923633 Msa0582430:CDS
AGTGCTGCTTTGCAAGAATG+AGG 0.519558 4_2:-929283 None:intergenic
CATTGCATTAATTTCATCAA+CGG 0.520848 4_2:-929330 None:intergenic
AGATATTTGATCTGCGGAAG+AGG 0.520913 4_2:-930020 None:intergenic
GAAATGGATGATTTAAAAGA+AGG 0.522785 4_2:+929604 Msa0582430:exon
CGAAACGTTTCATCTTCCAA+TGG 0.524463 4_2:+922217 Msa0582430:CDS
TCCGCAGATCAAATATCTGA+TGG 0.524576 4_2:+930025 Msa0582430:three_prime_UTR
GTAGCTGGATGACCATTACT+TGG 0.525308 4_2:-930092 None:intergenic
ATCGCAAACGTTAGCAATTG+GGG 0.525924 4_2:+923415 Msa0582430:CDS
CCTACTCAACTCACTGGCAG+TGG 0.530975 4_2:-929919 None:intergenic
TTGAGGAGGCGAGGATTGAG+GGG 0.532241 4_2:-921935 None:intergenic
AAAGAAGGTACAAAATAGAG+TGG 0.532648 4_2:+929619 Msa0582430:exon
TTTGTTGAAAACGGGATTTG+AGG 0.533091 4_2:-921952 None:intergenic
TTCAACAGAGAAACTGTAGC+TGG 0.534973 4_2:-930107 None:intergenic
TCTAATAGTAAATTTCCCAT+TGG 0.539006 4_2:-922233 None:intergenic
TCAGTAGTTCTAACTGTGCT+GGG 0.541221 4_2:-930237 None:intergenic
CAGTGTCAATTGCTCTCCAA+AGG 0.542771 4_2:+929397 Msa0582430:CDS
TAAATTTCAGAGAAACCTCA+AGG 0.544837 4_2:+927170 Msa0582430:intron
TTTGTTGATGAAGAATTCAA+AGG 0.546138 4_2:-930279 None:intergenic
TATGAAGTAGCTCTCTCCAT+TGG 0.546357 4_2:-929538 None:intergenic
CTCTCAGATCTTCTCAAAGG+AGG 0.548418 4_2:-922190 None:intergenic
CACTGCCAGTGAGTTGAGTA+GGG 0.548972 4_2:+929920 Msa0582430:three_prime_UTR
TGTACTGTTTCAGTGTTGGA+CGG 0.549517 4_2:+929220 Msa0582430:intron
CAACAAGGAGACAGATAAGA+AGG 0.549680 4_2:+923109 Msa0582430:CDS
TGTATTCTGCCATCTGAAGA+AGG 0.555461 4_2:+923227 Msa0582430:CDS
TATCTGATGGAGGTTTAGAC+GGG 0.555844 4_2:+930038 Msa0582430:three_prime_UTR
AGAAGATAGCAACATGGGTG+AGG 0.557756 4_2:+923145 Msa0582430:CDS
CTCAGAAGCGCAAAGACCAA+TGG 0.562654 4_2:+929522 Msa0582430:CDS
TTGTCATCATCAATAACTCT+AGG 0.565619 4_2:-923551 None:intergenic
TGCCTCCCTACTCAACTCAC+TGG 0.565756 4_2:-929925 None:intergenic
GAGGGGAATGTAATGATCAA+TGG 0.570151 4_2:-921918 None:intergenic
GATTGGCGAGTGCTCTAAAG+AGG 0.572234 4_2:+923172 Msa0582430:CDS
TGCTAGAAACTAGTTGTGCA+CGG 0.573112 4_2:+929895 Msa0582430:three_prime_UTR
AATATCTGATGGAGTTTAGA+CGG 0.575441 4_2:+930305 Msa0582430:three_prime_UTR
ATCGAGAAGGGATGCAGCTG+TGG 0.577662 4_2:+930210 Msa0582430:three_prime_UTR
GCAGCAAAGCTTTACAGGGT+CGG 0.581081 4_2:-923594 None:intergenic
TTTCTCTCAGATCTTCTCAA+AGG 0.582019 4_2:-922193 None:intergenic
TCATGTACCAGAAGCATGGA+AGG 0.582068 4_2:+926192 Msa0582430:CDS
GAAACTTGTGAGTTGAAGAT+GGG 0.583509 4_2:-930132 None:intergenic
TGCAATGTTGTAGAGACCAG+TGG 0.584361 4_2:+923614 Msa0582430:CDS
AAAGTCATGTACCAGAAGCA+TGG 0.590048 4_2:+926188 Msa0582430:CDS
AGACCGAACATTTGGAAGCA+AGG 0.590928 4_2:+929766 Msa0582430:three_prime_UTR
AACATGGGTGAGGACAAGAT+TGG 0.591573 4_2:+923155 Msa0582430:CDS
CATTGCAGCAAAGCTTTACA+GGG 0.592108 4_2:-923598 None:intergenic
ATCTGTCCACCAGTTATGGT+CGG 0.592543 4_2:-930168 None:intergenic
TGACAACTGCAAATTAATTG+TGG 0.593867 4_2:+923568 Msa0582430:CDS
GTTGAAAACGGGATTTGAGG+AGG 0.594059 4_2:-921949 None:intergenic
AAGAAGGTACAAAATAGAGT+GGG 0.595833 4_2:+929620 Msa0582430:three_prime_UTR
CATGGTGCCCAGAATCGAGA+AGG 0.601092 4_2:+930197 Msa0582430:three_prime_UTR
GCTAGAAACTAGTTGTGCAC+GGG 0.601472 4_2:+929896 Msa0582430:three_prime_UTR
TTAGACGGGTTGTATCATCA+AGG 0.605187 4_2:+930052 Msa0582430:three_prime_UTR
AGGACGGAGTCTAGCTCGAG+TGG 0.610518 4_2:+923266 Msa0582430:CDS
AACTCTTCTAGTCCAAGTAA+TGG 0.610682 4_2:+930080 Msa0582430:three_prime_UTR
ATGCTCAGGAATTTCACAAG+TGG 0.621524 4_2:+929684 Msa0582430:three_prime_UTR
ATCTGAAGAAGGCAAAGCGA+CGG 0.623874 4_2:+923238 Msa0582430:CDS
GTGCTGCTTTGCAAGAATGA+GGG 0.623920 4_2:-929282 None:intergenic
TCCATCAGATATTTGATCTG+CGG 0.625805 4_2:-930026 None:intergenic
AAACGGGATTTGAGGAGGCG+AGG 0.629820 4_2:-921944 None:intergenic
AATGTTCGGTCTCTAGAGCA+CGG 0.639404 4_2:-929755 None:intergenic
GGACGGAGTCTAGCTCGAGT+GGG 0.645012 4_2:+923267 Msa0582430:CDS
GTCTTGCCGACCATAACTGG+TGG 0.645541 4_2:+930162 Msa0582430:three_prime_UTR
TGGTGGACAGATACCAGTCA+TGG 0.649438 4_2:+930179 Msa0582430:three_prime_UTR
AGCGACTTTAGGTTCAGCAG+TGG 0.652082 4_2:+923316 Msa0582430:CDS
GGCTTCTGAATCATCAAACA+GGG 0.652695 4_2:+929418 Msa0582430:CDS
ATGGTGCCCAGAATCGAGAA+GGG 0.653898 4_2:+930198 Msa0582430:three_prime_UTR
GCAGATCAAATATCTGATGG+AGG 0.654761 4_2:+930028 Msa0582430:three_prime_UTR
GCAATGTTGTAGAGACCAGT+GGG 0.656890 4_2:+923615 Msa0582430:CDS
TCTGACCAGAGATAATTGAA+AGG 0.657470 4_2:-927897 None:intergenic
TGCCAGTGAGTTGAGTAGGG+AGG 0.658770 4_2:+929923 Msa0582430:three_prime_UTR
TTGGTTGCCAGATTGCAACA+AGG 0.665192 4_2:+923094 Msa0582430:intron
GACTCCAGAAGATAGCAACA+TGG 0.671285 4_2:+923139 Msa0582430:CDS
ACTCCAGAAGATAGCAACAT+GGG 0.674669 4_2:+923140 Msa0582430:CDS
CAAAGCGACGGATATGAGGA+CGG 0.676572 4_2:+923250 Msa0582430:CDS
AAATTTCAGAGAAACCTCAA+GGG 0.679153 4_2:+927171 Msa0582430:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTTTTATTTTTT+TGG + chr4_2:923068-923087 Msa0582430:intron 0.0%
!!! ATTTTTATTTTTTTGGTTAT+TGG + chr4_2:923075-923094 Msa0582430:intron 10.0%
!! ATAAAAAAATTGAAGTTAAA+TGG - chr4_2:923761-923780 None:intergenic 10.0%
!! TAAATAAATTACTATATATG+TGG - chr4_2:924926-924945 None:intergenic 10.0%
!! ATATAGTAATTTATTTATAG+AGG + chr4_2:924929-924948 Msa0582430:intron 10.0%
!! TATAGTAATTTATTTATAGA+GGG + chr4_2:924930-924949 Msa0582430:intron 10.0%
!!! AGAAAAAAACAATTTTATTT+AGG + chr4_2:925278-925297 Msa0582430:intron 10.0%
!!! ATGGTTTTTAATTTAACATA+TGG - chr4_2:921978-921997 None:intergenic 15.0%
!! AAAAAAATCATTTCTATTTC+TGG + chr4_2:922045-922064 Msa0582430:five_prime_UTR 15.0%
!!! TGTTAATTTTGGATTTTTTA+AGG + chr4_2:922354-922373 Msa0582430:intron 15.0%
!! TTTAGTCCTAATTATATAAA+AGG - chr4_2:923961-923980 None:intergenic 15.0%
!! AAAGTTAATATTTAAATGAG+TGG - chr4_2:924044-924063 None:intergenic 15.0%
!! TTTATGATAGACTTTATATA+AGG - chr4_2:924666-924685 None:intergenic 15.0%
!! TAAATAAAGATCAAATACTA+TGG - chr4_2:925037-925056 None:intergenic 15.0%
!! TACAGTCTAATAAAATAATT+TGG + chr4_2:925728-925747 Msa0582430:intron 15.0%
!! AAACAAAACATAAAAAATGA+TGG - chr4_2:926228-926247 None:intergenic 15.0%
!! AACACAACAAAATTTATTTA+GGG - chr4_2:927005-927024 None:intergenic 15.0%
!! TAACACAACAAAATTTATTT+AGG - chr4_2:927006-927025 None:intergenic 15.0%
!!! AGGAATTTTTTTAAGAATAA+TGG - chr4_2:928895-928914 None:intergenic 15.0%
!! ATTCTTAAAAAAATTCCTAT+AGG + chr4_2:928897-928916 Msa0582430:intron 15.0%
!! ATTGTTTAAATATAATGACT+AGG - chr4_2:929026-929045 None:intergenic 15.0%
!! TCAAATAAATTTCATAGAAA+AGG - chr4_2:929051-929070 None:intergenic 15.0%
!!! TAGAAATGATTTTTTTGACT+AGG - chr4_2:922041-922060 None:intergenic 20.0%
!!! AAATTTTCACCTTTCTTTTT+TGG - chr4_2:922292-922311 None:intergenic 20.0%
!!! GTTGTTTATGTTGTTAATTT+TGG + chr4_2:922343-922362 Msa0582430:intron 20.0%
!!! ATTTTGGATTTTTTAAGGAA+AGG + chr4_2:922359-922378 Msa0582430:intron 20.0%
!!! CAATTATTTGTTGTGAAATT+AGG + chr4_2:922383-922402 Msa0582430:intron 20.0%
!!! AACTATGCTTTATTTATGAA+CGG - chr4_2:922810-922829 None:intergenic 20.0%
!! AAGTTTCTTAATAGTTCTTT+CGG + chr4_2:922971-922990 Msa0582430:intron 20.0%
!! ATTCAAATGAAAGTTTGATT+AGG + chr4_2:923444-923463 Msa0582430:CDS 20.0%
!! AAATGTGTTGTAAATGAAAA+CGG + chr4_2:923467-923486 Msa0582430:CDS 20.0%
!!! TTAAATGGTTGTGATTTTAT+AGG - chr4_2:923746-923765 None:intergenic 20.0%
!!! TTTTGGCCTTTTATATAATT+AGG + chr4_2:923952-923971 Msa0582430:intron 20.0%
!! TAATATTTAAATGAGTGGAT+TGG - chr4_2:924039-924058 None:intergenic 20.0%
!! TGATGTTAAAAATCACATAA+GGG - chr4_2:924136-924155 None:intergenic 20.0%
!! TTGATGTTAAAAATCACATA+AGG - chr4_2:924137-924156 None:intergenic 20.0%
!!! TTTAAAATGGAAAAATCGTT+TGG + chr4_2:924532-924551 Msa0582430:intron 20.0%
!! ATAAATTACTATATATGTGG+CGG - chr4_2:924923-924942 None:intergenic 20.0%
!!! ATTTTTAGCTTTTTTGATAG+TGG - chr4_2:925065-925084 None:intergenic 20.0%
!! AAAATTAAACTCGGAAAAAA+TGG + chr4_2:925437-925456 Msa0582430:intron 20.0%
!! AGTTATTCAATTAACATGTA+AGG + chr4_2:925642-925661 Msa0582430:intron 20.0%
!!! ACATGTAAGGTTTTATATAT+TGG + chr4_2:925655-925674 Msa0582430:intron 20.0%
!! GTCTAATAAAATAATTTGGA+TGG + chr4_2:925732-925751 Msa0582430:intron 20.0%
!! TGAACAAATTGAAAATATGA+AGG + chr4_2:925805-925824 Msa0582430:intron 20.0%
!!! TTTCATTTTCTAGTAAATGA+TGG + chr4_2:926043-926062 Msa0582430:intron 20.0%
!!! ATTTTTCTCTATTCTTTGAT+TGG + chr4_2:926111-926130 Msa0582430:intron 20.0%
!!! TTTATGTTTTGTTTTGTTGA+TGG + chr4_2:926234-926253 Msa0582430:intron 20.0%
!!! TTTTAATAGTTCAATGAGAT+TGG + chr4_2:926258-926277 Msa0582430:intron 20.0%
!!! ATGGTTTTTTTGTTTAGTTT+TGG + chr4_2:926553-926572 Msa0582430:intron 20.0%
!!! TCTTAAAATGATGTAGTTTT+CGG + chr4_2:927054-927073 Msa0582430:intron 20.0%
!! TTACAATATGTATCAAAATG+AGG - chr4_2:927104-927123 None:intergenic 20.0%
!!! GGATTAATTTTGTTGTATTA+TGG + chr4_2:927459-927478 Msa0582430:intron 20.0%
!! CAAATATCTATGAAATTGAA+AGG - chr4_2:927592-927611 None:intergenic 20.0%
!! TCTATTATCATCAAATTTGA+TGG + chr4_2:927757-927776 Msa0582430:intron 20.0%
!!! TCTTTTTTTCTTCAGAAAAT+TGG + chr4_2:928010-928029 Msa0582430:intron 20.0%
!!! CTTATGGATTATTGTTTTAT+AGG + chr4_2:928256-928275 Msa0582430:intron 20.0%
!! AACATAAAAAACAAGTACAA+AGG - chr4_2:928449-928468 None:intergenic 20.0%
!! TAGTGAGTTAAATGTATTAA+AGG - chr4_2:929191-929210 None:intergenic 20.0%
!!! TTCTTTTAAATCATCCATTT+CGG - chr4_2:929605-929624 None:intergenic 20.0%
!!! AACATATGGTTTGTTGAAAA+CGG - chr4_2:921964-921983 None:intergenic 25.0%
! AAAATGCGAGTAATACTATA+TGG - chr4_2:921997-922016 None:intergenic 25.0%
!!! ATTTCTATTTCTGGTGAATT+AGG + chr4_2:922054-922073 Msa0582430:five_prime_UTR 25.0%
!!! TTTCTATTTCTGGTGAATTA+GGG + chr4_2:922055-922074 Msa0582430:five_prime_UTR 25.0%
! ACTTACATTGTTGAAGAAAA+TGG + chr4_2:922114-922133 Msa0582430:exon 25.0%
! TCTAATAGTAAATTTCCCAT+TGG - chr4_2:922236-922255 None:intergenic 25.0%
! TTAACTCAACCAAAAAAGAA+AGG + chr4_2:922280-922299 Msa0582430:CDS 25.0%
!! TGAAATTAGGTTGTAAAGAT+GGG + chr4_2:922396-922415 Msa0582430:intron 25.0%
! TTTGTTAGAGTTCAATAGAA+TGG + chr4_2:922514-922533 Msa0582430:intron 25.0%
! TTGTTAGAGTTCAATAGAAT+GGG + chr4_2:922515-922534 Msa0582430:intron 25.0%
!!! GATTTTTCCTAGTTTTTAAC+CGG + chr4_2:922690-922709 Msa0582430:intron 25.0%
!!! CTATTTTCTAGCAAACTTTA+GGG + chr4_2:923662-923681 Msa0582430:intron 25.0%
!! ATGCTAATTTTTGAATAGCA+GGG + chr4_2:923702-923721 Msa0582430:intron 25.0%
!! TCTAGTTCCTAATAAAATCA+CGG - chr4_2:923825-923844 None:intergenic 25.0%
! ACATTTAATCCTTTCTCAAA+AGG - chr4_2:924013-924032 None:intergenic 25.0%
!! AATATTAACTTTGTTTCCCT+TGG + chr4_2:924052-924071 Msa0582430:intron 25.0%
! ATGTTAAAAATCACATAAGG+GGG - chr4_2:924134-924153 None:intergenic 25.0%
! GATGTTAAAAATCACATAAG+GGG - chr4_2:924135-924154 None:intergenic 25.0%
!! TATCTCTAATGTTTTCTTCA+TGG - chr4_2:924316-924335 None:intergenic 25.0%
! CTTCGAACTTAATATATGAT+AGG + chr4_2:924345-924364 Msa0582430:intron 25.0%
!!! GGTAGAAGAAGTTTTTAAAA+TGG + chr4_2:924519-924538 Msa0582430:intron 25.0%
! AAACATTTCTAATGATGTGA+CGG - chr4_2:924752-924771 None:intergenic 25.0%
!!! TCCTAGATTTTTTACATTAG+CGG - chr4_2:924892-924911 None:intergenic 25.0%
!!! AACAATTTTATTTAGGACAC+CGG + chr4_2:925285-925304 Msa0582430:intron 25.0%
! TTAATGCAGAGAAAAGATAT+AGG + chr4_2:925835-925854 Msa0582430:intron 25.0%
! TAATGCAGAGAAAAGATATA+GGG + chr4_2:925836-925855 Msa0582430:intron 25.0%
!!! TTTGTCATACATGTTACTTT+TGG + chr4_2:925887-925906 Msa0582430:intron 25.0%
!!! TTGTCATACATGTTACTTTT+GGG + chr4_2:925888-925907 Msa0582430:intron 25.0%
! AAAATAAAATGGAGGAAGAA+AGG + chr4_2:925975-925994 Msa0582430:intron 25.0%
! AAATAAAATGGAGGAAGAAA+GGG + chr4_2:925976-925995 Msa0582430:intron 25.0%
!!! ATTCTTTGATTGGTTTCTTT+AGG + chr4_2:926121-926140 Msa0582430:intron 25.0%
!!! TTCTTTGATTGGTTTCTTTA+GGG + chr4_2:926122-926141 Msa0582430:intron 25.0%
! AAAAGCAGTTGAACTAAATA+GGG - chr4_2:926392-926411 None:intergenic 25.0%
! GATACTTCTCAAATAATGAA+AGG - chr4_2:926454-926473 None:intergenic 25.0%
!!! TTTTTTTGTTTAGTTTTGGC+TGG + chr4_2:926557-926576 Msa0582430:intron 25.0%
!!! TTTTTTGTTTAGTTTTGGCT+GGG + chr4_2:926558-926577 Msa0582430:intron 25.0%
!! CAGAGTTTAAAACTTTCTAT+AGG - chr4_2:926599-926618 None:intergenic 25.0%
!!! CTATAGAAAGTTTTAAACTC+TGG + chr4_2:926597-926616 Msa0582430:intron 25.0%
! AAAACTTTGAACAATGTTGA+AGG + chr4_2:926815-926834 Msa0582430:intron 25.0%
! CTGTTGAAAATGAGAAAATA+AGG + chr4_2:927198-927217 Msa0582430:CDS 25.0%
!!! CTACTTGTTTTTACTTTACT+AGG + chr4_2:927298-927317 Msa0582430:intron 25.0%
!!! TAATCACAGTTTGATTTTGT+TGG + chr4_2:927407-927426 Msa0582430:intron 25.0%
! AGTTAGTGAATACATTGAAA+TGG + chr4_2:927482-927501 Msa0582430:intron 25.0%
!! TATTTGAATGCATTTGACTT+TGG + chr4_2:927606-927625 Msa0582430:intron 25.0%
!!! ATACAATCTTTTAAAGTCCT+TGG - chr4_2:927686-927705 None:intergenic 25.0%
! TTGTATAAGTAGATTGTTTG+TGG + chr4_2:928085-928104 Msa0582430:intron 25.0%
! TTTATAATTTAGTGAGATCC+TGG - chr4_2:928194-928213 None:intergenic 25.0%
! AGGATCTCACTAAATTATAA+AGG + chr4_2:928193-928212 Msa0582430:intron 25.0%
! GGATCTCACTAAATTATAAA+GGG + chr4_2:928194-928213 Msa0582430:intron 25.0%
!! AGAATGAAAAAGCATACTTA+TGG + chr4_2:928240-928259 Msa0582430:intron 25.0%
! AAAACAAGTACAAAGGAAAA+AGG - chr4_2:928442-928461 None:intergenic 25.0%
!! TCAACTTACATTTAGTTTCA+AGG - chr4_2:928477-928496 None:intergenic 25.0%
! ACTGGTAGTATTAATGTAAA+TGG + chr4_2:928671-928690 Msa0582430:intron 25.0%
!!! ATATTAAATGGGTTTTGAGA+TGG - chr4_2:929116-929135 None:intergenic 25.0%
! ATCTCAAAACCCATTTAATA+TGG + chr4_2:929115-929134 Msa0582430:intron 25.0%
! TCTCAAAACCCATTTAATAT+GGG + chr4_2:929116-929135 Msa0582430:intron 25.0%
!! TTTTAAGCCGTATAAACTAA+GGG - chr4_2:929145-929164 None:intergenic 25.0%
!!! TTTTTAAGCCGTATAAACTA+AGG - chr4_2:929146-929165 None:intergenic 25.0%
! AATGCATACTATTTACTTGA+TGG + chr4_2:929165-929184 Msa0582430:intron 25.0%
!!! TTGAATTTTGACTGTAAGAA+AGG + chr4_2:929305-929324 Msa0582430:CDS 25.0%
! CATTGCATTAATTTCATCAA+CGG - chr4_2:929333-929352 None:intergenic 25.0%
! ATGAAATTAATGCAATGCTT+TGG + chr4_2:929336-929355 Msa0582430:CDS 25.0%
! TGAAATTAATGCAATGCTTT+GGG + chr4_2:929337-929356 Msa0582430:CDS 25.0%
!!! AATTCTGGAAATAACGTTTT+TGG - chr4_2:929483-929502 None:intergenic 25.0%
!!! TTTAGTATTTCTGGAAATTC+TGG - chr4_2:929498-929517 None:intergenic 25.0%
! GAAATGGATGATTTAAAAGA+AGG + chr4_2:929604-929623 Msa0582430:exon 25.0%
!! TTTGTTGATGAAGAATTCAA+AGG - chr4_2:930282-930301 None:intergenic 25.0%
! TCAACAAATCAAATATCTGA+TGG + chr4_2:930294-930313 Msa0582430:three_prime_UTR 25.0%
!! ACATATGGTTTGTTGAAAAC+GGG - chr4_2:921963-921982 None:intergenic 30.0%
ATCTTCTTGTTAGATGAAGA+AGG - chr4_2:922148-922167 None:intergenic 30.0%
! GTGAAATTAGGTTGTAAAGA+TGG + chr4_2:922395-922414 Msa0582430:intron 30.0%
AGTTAGATTGTTATACAAGC+TGG + chr4_2:922486-922505 Msa0582430:intron 30.0%
TGATGAGTTAGTTATAGTGT+TGG + chr4_2:922908-922927 Msa0582430:intron 30.0%
!!! AATGTGCTTTTTCTTTTCGA+AGG - chr4_2:923506-923525 None:intergenic 30.0%
! TTCGAAAAGAAAAAGCACAT+TGG + chr4_2:923505-923524 Msa0582430:CDS 30.0%
TTGTCATCATCAATAACTCT+AGG - chr4_2:923554-923573 None:intergenic 30.0%
TGACAACTGCAAATTAATTG+TGG + chr4_2:923568-923587 Msa0582430:CDS 30.0%
!! GCTATTTTCTAGCAAACTTT+AGG + chr4_2:923661-923680 Msa0582430:intron 30.0%
! GATGCTAATTTTTGAATAGC+AGG + chr4_2:923701-923720 Msa0582430:intron 30.0%
!! GAAAAGTGTCTTATAACCAA+GGG - chr4_2:923882-923901 None:intergenic 30.0%
!! AGAAAAGTGTCTTATAACCA+AGG - chr4_2:923883-923902 None:intergenic 30.0%
CATGCTTGATATGCAATATA+TGG - chr4_2:923932-923951 None:intergenic 30.0%
! ATTGCATATCAAGCATGTTT+TGG + chr4_2:923935-923954 Msa0582430:intron 30.0%
TTAATCCTTTCTCAAAAGGA+GGG - chr4_2:924009-924028 None:intergenic 30.0%
TTTAATCCTTTCTCAAAAGG+AGG - chr4_2:924010-924029 None:intergenic 30.0%
TGTTAAAAATCACATAAGGG+GGG - chr4_2:924133-924152 None:intergenic 30.0%
! AAGTCTTTCTTCAGATGTTT+TGG + chr4_2:924183-924202 Msa0582430:intron 30.0%
! CTCCTTATTAAGGTTTTCAT+GGG - chr4_2:924223-924242 None:intergenic 30.0%
CATGAAAACCTTAATAAGGA+GGG + chr4_2:924222-924241 Msa0582430:intron 30.0%
AAGAGACCAAGAAAAACTAA+AGG + chr4_2:924285-924304 Msa0582430:intron 30.0%
!!! GTTTGACCTTTAGTTTTTCT+TGG - chr4_2:924294-924313 None:intergenic 30.0%
ATAGGTAATTGTGATGTCTT+AGG + chr4_2:924363-924382 Msa0582430:intron 30.0%
! ATTGTCACATAGTGTTTTGT+TGG + chr4_2:924575-924594 Msa0582430:intron 30.0%
!! TTGTCACATAGTGTTTTGTT+GGG + chr4_2:924576-924595 Msa0582430:intron 30.0%
ACCGCTAATGTAAAAAATCT+AGG + chr4_2:924888-924907 Msa0582430:intron 30.0%
AGAAATGTTGATCAATTAGG+GGG - chr4_2:925115-925134 None:intergenic 30.0%
GAGAAATGTTGATCAATTAG+GGG - chr4_2:925116-925135 None:intergenic 30.0%
CGAGAAATGTTGATCAATTA+GGG - chr4_2:925117-925136 None:intergenic 30.0%
TCGAGAAATGTTGATCAATT+AGG - chr4_2:925118-925137 None:intergenic 30.0%
!!! GAAACATTTTTTCTCTCTCT+TGG - chr4_2:925177-925196 None:intergenic 30.0%
GATATGGCAATTTAATGCAA+TGG + chr4_2:925763-925782 Msa0582430:intron 30.0%
! AGTTTCTATCTTTTCCCTTT+TGG + chr4_2:925932-925951 Msa0582430:intron 30.0%
CACGGGAATAGAAAATAAAA+TGG + chr4_2:925964-925983 Msa0582430:intron 30.0%
GGGAATAGAAAATAAAATGG+AGG + chr4_2:925967-925986 Msa0582430:intron 30.0%
CAAAATAAAAACCCAATGCA+GGG - chr4_2:926081-926100 None:intergenic 30.0%
ACAAAATAAAAACCCAATGC+AGG - chr4_2:926082-926101 None:intergenic 30.0%
!! TCTTTGATTGGTTTCTTTAG+GGG + chr4_2:926123-926142 Msa0582430:intron 30.0%
!!! TCATCATTAGATTTTGAAGC+AGG - chr4_2:926168-926187 None:intergenic 30.0%
CAATGAGATTGGTAAATAGT+AGG + chr4_2:926269-926288 Msa0582430:intron 30.0%
GTAGGAATTATTGTCCTATT+TGG + chr4_2:926287-926306 Msa0582430:intron 30.0%
TATGGTAAGAAACACCAAAT+AGG - chr4_2:926304-926323 None:intergenic 30.0%
CAAAAGCAGTTGAACTAAAT+AGG - chr4_2:926393-926412 None:intergenic 30.0%
!!! AAGTCGTATCATGACTTTTT+TGG + chr4_2:926525-926544 Msa0582430:intron 30.0%
!!! CATGACTTTTTTGGTCAAAA+TGG + chr4_2:926534-926553 Msa0582430:intron 30.0%
! TTTTAAACTCTGGCATCATT+TGG + chr4_2:926607-926626 Msa0582430:intron 30.0%
GGATAAAGAACGAATAAGTA+AGG - chr4_2:926704-926723 None:intergenic 30.0%
GTTCTTTATCCTATTGAGTA+TGG + chr4_2:926713-926732 Msa0582430:intron 30.0%
CTTCTTATTCCATACTCAAT+AGG - chr4_2:926725-926744 None:intergenic 30.0%
CAATGTTGAAGGACAAATTT+AGG + chr4_2:926826-926845 Msa0582430:intron 30.0%
AAAGTATGCTGTTATCAGTT+TGG - chr4_2:926967-926986 None:intergenic 30.0%
ATGTATCAAAATGAGGAGAA+AGG - chr4_2:927097-927116 None:intergenic 30.0%
AGTAAAAGATGTCATTCACA+TGG - chr4_2:927133-927152 None:intergenic 30.0%
TAAATTTCAGAGAAACCTCA+AGG + chr4_2:927170-927189 Msa0582430:intron 30.0%
AAATTTCAGAGAAACCTCAA+GGG + chr4_2:927171-927190 Msa0582430:intron 30.0%
GTAAAAACAAGTAGCATACT+GGG - chr4_2:927292-927311 None:intergenic 30.0%
AGTAAAAACAAGTAGCATAC+TGG - chr4_2:927293-927312 None:intergenic 30.0%
!!! CTAGAGTACACTTTATTTTC+TGG + chr4_2:927367-927386 Msa0582430:intron 30.0%
TACAAGTATAGCCATTATTG+CGG - chr4_2:927508-927527 None:intergenic 30.0%
TACTTGTAAGCAATAAAACC+TGG + chr4_2:927520-927539 Msa0582430:intron 30.0%
GATGATAATAGAGCTTAGAT+TGG - chr4_2:927749-927768 None:intergenic 30.0%
AGAACCAGTATCAATATTAC+AGG + chr4_2:927874-927893 Msa0582430:CDS 30.0%
TACTAGCAGTCACATATTAA+CGG - chr4_2:928053-928072 None:intergenic 30.0%
TCTACTTATACAATTGACCT+TGG - chr4_2:928078-928097 None:intergenic 30.0%
!! ATTATAAAGGGCATTATGCT+TGG + chr4_2:928206-928225 Msa0582430:intron 30.0%
! CTTACATTTAGTTTCAAGGT+AGG - chr4_2:928473-928492 None:intergenic 30.0%
AGAATCGGGTAAAGAATAAT+TGG - chr4_2:928614-928633 None:intergenic 30.0%
GTTAGTTACATAAGGAATGA+GGG - chr4_2:928827-928846 None:intergenic 30.0%
AGTTAGTTACATAAGGAATG+AGG - chr4_2:928828-928847 None:intergenic 30.0%
AGAACTTGTGTAGAAGAATT+AGG - chr4_2:928971-928990 None:intergenic 30.0%
AAGGGTTTCCCATATTAAAT+GGG - chr4_2:929127-929146 None:intergenic 30.0%
TAAGGGTTTCCCATATTAAA+TGG - chr4_2:929128-929147 None:intergenic 30.0%
CTGAGTTTCTTTAGTATTTC+TGG - chr4_2:929507-929526 None:intergenic 30.0%
! AAAAAGATTTGAGACCGAAA+TGG + chr4_2:929588-929607 Msa0582430:CDS 30.0%
! AAAGAAGGTACAAAATAGAG+TGG + chr4_2:929619-929638 Msa0582430:exon 30.0%
! AAGAAGGTACAAAATAGAGT+GGG + chr4_2:929620-929639 Msa0582430:three_prime_UTR 30.0%
!! AAAGATTTTCGGAGCATTAT+GGG - chr4_2:929862-929881 None:intergenic 30.0%
! TCATCAGACAGAAAGATTTT+CGG - chr4_2:929873-929892 None:intergenic 30.0%
AATATCTGATGGAGTTTAGA+CGG + chr4_2:930305-930324 Msa0582430:three_prime_UTR 30.0%
TTTGTTGAAAACGGGATTTG+AGG - chr4_2:921955-921974 None:intergenic 35.0%
TTGTTAGATGAAGAAGGACT+TGG - chr4_2:922142-922161 None:intergenic 35.0%
TTTCTCTCAGATCTTCTCAA+AGG - chr4_2:922196-922215 None:intergenic 35.0%
GAAACGTTTCATCTTCCAAT+GGG + chr4_2:922218-922237 Msa0582430:CDS 35.0%
AAAGATGGGTAGTAATGAGT+TGG + chr4_2:922410-922429 Msa0582430:intron 35.0%
TAGAGTTCAATAGAATGGGT+CGG + chr4_2:922519-922538 Msa0582430:intron 35.0%
TAACACAAACAAGTCGATAC+CGG - chr4_2:922712-922731 None:intergenic 35.0%
!! AGTGTTGGTTAAAGTTCTGT+TGG + chr4_2:922923-922942 Msa0582430:intron 35.0%
AGACGACATAGAAGTGAAAA+TGG + chr4_2:922999-923018 Msa0582430:intron 35.0%
! AGATCGTCAAACAGTTTTTG+AGG + chr4_2:923202-923221 Msa0582430:CDS 35.0%
! GAAAAGAAAAAGCACATTGG+TGG + chr4_2:923508-923527 Msa0582430:CDS 35.0%
! ACTTACCTTATCCTTTTGGA+AGG - chr4_2:923641-923660 None:intergenic 35.0%
! TAGCACTTACCTTATCCTTT+TGG - chr4_2:923645-923664 None:intergenic 35.0%
AGCAGGGCTAAATATATTGT+TGG + chr4_2:923718-923737 Msa0582430:intron 35.0%
! TGTACAGCCGTGATTTTATT+AGG + chr4_2:923815-923834 Msa0582430:intron 35.0%
CAACACAAATACATCTCCAA+GGG - chr4_2:924071-924090 None:intergenic 35.0%
GACCCATGAAAACCTTAATA+AGG + chr4_2:924218-924237 Msa0582430:intron 35.0%
! CCTCCTTATTAAGGTTTTCA+TGG - chr4_2:924224-924243 None:intergenic 35.0%
CCATGAAAACCTTAATAAGG+AGG + chr4_2:924221-924240 Msa0582430:intron 35.0%
AACATTAGTTGATCCTCTGA+AGG + chr4_2:924478-924497 Msa0582430:intron 35.0%
!! TGTCACATAGTGTTTTGTTG+GGG + chr4_2:924577-924596 Msa0582430:intron 35.0%
! TCTAAAGTCACACACATGAT+TGG + chr4_2:924791-924810 Msa0582430:intron 35.0%
! TATGAGTGTTGTACAAGTGT+CGG + chr4_2:925229-925248 Msa0582430:intron 35.0%
CAGCGCATGAAAATTAAACT+CGG + chr4_2:925428-925447 Msa0582430:intron 35.0%
! TGACTTTAGAAGTAGGAAGA+GGG - chr4_2:925503-925522 None:intergenic 35.0%
! ATGTGTGTGACTTTAGAAGT+AGG - chr4_2:924788-924807 None:intergenic 35.0%
! TCTAAAGTCACACACATGAT+TGG + chr4_2:924791-924810 Msa0582430:intron 35.0%
!! CTTTGATTGGTTTCTTTAGG+GGG + chr4_2:926124-926143 Msa0582430:intron 35.0%
! TGTACTTTTGCAGGAAAATC+AGG + chr4_2:926340-926359 Msa0582430:intron 35.0%
TTTGTTCGTATAGCGTTTCT+TGG + chr4_2:926409-926428 Msa0582430:intron 35.0%
TATAGCGTTTCTTGGAAACT+TGG + chr4_2:926417-926436 Msa0582430:intron 35.0%
CATTTCAGCTACCAATAAGA+AGG - chr4_2:926670-926689 None:intergenic 35.0%
! CTTCTTATTGGTAGCTGAAA+TGG + chr4_2:926668-926687 Msa0582430:intron 35.0%
! CTTCTGTCAATATTTTCCCT+CGG - chr4_2:926776-926795 None:intergenic 35.0%
TGTTGAAGGACAAATTTAGG+TGG + chr4_2:926829-926848 Msa0582430:intron 35.0%
CAGTTTGAAGGTGACAAAAA+AGG - chr4_2:926908-926927 None:intergenic 35.0%
! TTTTGTCACCTTCAAACTGA+AGG + chr4_2:926909-926928 Msa0582430:intron 35.0%
ATGTGTTTCCTTCAGTTTGA+AGG - chr4_2:926920-926939 None:intergenic 35.0%
GCATTCATAATCTTGAATCC+AGG - chr4_2:927541-927560 None:intergenic 35.0%
TTATGAATGCCCATAACCTA+AGG + chr4_2:927551-927570 Msa0582430:intron 35.0%
CTCCATATTCCTTAGGTTAT+GGG - chr4_2:927563-927582 None:intergenic 35.0%
TCACAAGACACGTGAATAAA+CGG - chr4_2:927710-927729 None:intergenic 35.0%
TTTATTCACGTGTCTTGTGA+TGG + chr4_2:927710-927729 Msa0582430:intron 35.0%
ACATAACTTCGTTACATTGC+AGG + chr4_2:927787-927806 Msa0582430:intron 35.0%
! GATAATGTCAAGAGTATGGT+TGG + chr4_2:927809-927828 Msa0582430:CDS 35.0%
AAGGCCTGTAATATTGATAC+TGG - chr4_2:927881-927900 None:intergenic 35.0%
TCTGACCAGAGATAATTGAA+AGG - chr4_2:927900-927919 None:intergenic 35.0%
ACTAGCAGTCACATATTAAC+GGG - chr4_2:928052-928071 None:intergenic 35.0%
GTTTGTGGTCATGTAAGATT+TGG + chr4_2:928100-928119 Msa0582430:intron 35.0%
AGAAGTTGCAAAACAAAACG+AGG - chr4_2:928142-928161 None:intergenic 35.0%
!!! TCGTTTTGTTTTGCAACTTC+TGG + chr4_2:928141-928160 Msa0582430:intron 35.0%
TAATTTAGTGAGATCCTGGA+GGG - chr4_2:928190-928209 None:intergenic 35.0%
ATAATTTAGTGAGATCCTGG+AGG - chr4_2:928191-928210 None:intergenic 35.0%
! ACCATACGACTCTTTTTCTT+GGG + chr4_2:928345-928364 Msa0582430:intron 35.0%
! TAAGTTGAGATTCTGATTCC+TGG + chr4_2:928489-928508 Msa0582430:intron 35.0%
AAGTTGAGATTCTGATTCCT+GGG + chr4_2:928490-928509 Msa0582430:intron 35.0%
AGAAGATACTGAACTAAGAC+TGG + chr4_2:928653-928672 Msa0582430:intron 35.0%
AATTCTGTTAGAAGTGAGAG+CGG - chr4_2:928782-928801 None:intergenic 35.0%
ACGGGAAAGTTAGTTACATA+AGG - chr4_2:928835-928854 None:intergenic 35.0%
AGGAGGAAAAAAGGATAAAG+GGG - chr4_2:929074-929093 None:intergenic 35.0%
GAGGAGGAAAAAAGGATAAA+GGG - chr4_2:929075-929094 None:intergenic 35.0%
TGGGAAACCCTTAGTTTATA+CGG + chr4_2:929135-929154 Msa0582430:intron 35.0%
! GACAAGTTTTTATTACGCAC+AGG + chr4_2:929368-929387 Msa0582430:CDS 35.0%
! TTTGATGATTCAGAAGCCTT+TGG - chr4_2:929416-929435 None:intergenic 35.0%
!! CTTCTTCTTCTTTAGAGCTT+GGG - chr4_2:929658-929677 None:intergenic 35.0%
!! TCTTCTTCTTCTTTAGAGCT+TGG - chr4_2:929659-929678 None:intergenic 35.0%
GTCAAACCTAGTTTCTTCTA+AGG + chr4_2:929824-929843 Msa0582430:three_prime_UTR 35.0%
CAAGTTCCTTAGAAGAAACT+AGG - chr4_2:929833-929852 None:intergenic 35.0%
!! AAGATTTTCGGAGCATTATG+GGG - chr4_2:929861-929880 None:intergenic 35.0%
!! GAAAGATTTTCGGAGCATTA+TGG - chr4_2:929863-929882 None:intergenic 35.0%
TCCATCAGATATTTGATCTG+CGG - chr4_2:930029-930048 None:intergenic 35.0%
ATATCTGATGGAGGTTTAGA+CGG + chr4_2:930037-930056 Msa0582430:three_prime_UTR 35.0%
AACTCTTCTAGTCCAAGTAA+TGG + chr4_2:930080-930099 Msa0582430:three_prime_UTR 35.0%
! GAAACTTGTGAGTTGAAGAT+GGG - chr4_2:930135-930154 None:intergenic 35.0%
! AGAAACTTGTGAGTTGAAGA+TGG - chr4_2:930136-930155 None:intergenic 35.0%
GAGGGGAATGTAATGATCAA+TGG - chr4_2:921921-921940 None:intergenic 40.0%
CGAAACGTTTCATCTTCCAA+TGG + chr4_2:922217-922236 Msa0582430:CDS 40.0%
!! AATGAGTTGGTAGAGGTAGT+TGG + chr4_2:922423-922442 Msa0582430:intron 40.0%
TAGAGGTAGTTGGAGTTGTT+AGG + chr4_2:922433-922452 Msa0582430:intron 40.0%
AGAGGTAGTTGGAGTTGTTA+GGG + chr4_2:922434-922453 Msa0582430:intron 40.0%
! GTCGATACCGGTTAAAAACT+AGG - chr4_2:922700-922719 None:intergenic 40.0%
CACAAAACTGACACAAACAC+CGG - chr4_2:922744-922763 None:intergenic 40.0%
TGTACACACGTAACAAATCG+TGG + chr4_2:922839-922858 Msa0582430:intron 40.0%
GTACACACGTAACAAATCGT+GGG + chr4_2:922840-922859 Msa0582430:intron 40.0%
TTGGTGTGATGACTCAATGT+AGG + chr4_2:922942-922961 Msa0582430:intron 40.0%
! AGTGAAAATGGTGTTGAGTG+AGG + chr4_2:923011-923030 Msa0582430:intron 40.0%
CAACAAGGAGACAGATAAGA+AGG + chr4_2:923109-923128 Msa0582430:CDS 40.0%
ACTCCAGAAGATAGCAACAT+GGG + chr4_2:923140-923159 Msa0582430:CDS 40.0%
TGTATTCTGCCATCTGAAGA+AGG + chr4_2:923227-923246 Msa0582430:CDS 40.0%
TCTGCAAAGAAAGCGACTTT+AGG + chr4_2:923305-923324 Msa0582430:CDS 40.0%
CAATCAGACTGAACTCTTTC+AGG - chr4_2:923380-923399 None:intergenic 40.0%
TCAGTCTGATTGCCATGAAA+AGG + chr4_2:923388-923407 Msa0582430:CDS 40.0%
! TTTGCGATGTCTCCTTTTCA+TGG - chr4_2:923403-923422 None:intergenic 40.0%
ACATCGCAAACGTTAGCAAT+TGG + chr4_2:923413-923432 Msa0582430:CDS 40.0%
CATCGCAAACGTTAGCAATT+GGG + chr4_2:923414-923433 Msa0582430:CDS 40.0%
ATCGCAAACGTTAGCAATTG+GGG + chr4_2:923415-923434 Msa0582430:CDS 40.0%
CATTGCAGCAAAGCTTTACA+GGG - chr4_2:923601-923620 None:intergenic 40.0%
ACATTGCAGCAAAGCTTTAC+AGG - chr4_2:923602-923621 None:intergenic 40.0%
AAGTGTCTTATAACCAAGGG+CGG - chr4_2:923879-923898 None:intergenic 40.0%
!! CATTTCCCTCCTTTTGAGAA+AGG + chr4_2:924001-924020 Msa0582430:intron 40.0%
GCAACACAAATACATCTCCA+AGG - chr4_2:924072-924091 None:intergenic 40.0%
AAGAAAGACTTTGACAGTGG+AGG - chr4_2:924174-924193 None:intergenic 40.0%
CTGAAGAAAGACTTTGACAG+TGG - chr4_2:924177-924196 None:intergenic 40.0%
TGTAGGATAGTCCAGTAGTT+AGG + chr4_2:924254-924273 Msa0582430:intron 40.0%
GTAGGATAGTCCAGTAGTTA+GGG + chr4_2:924255-924274 Msa0582430:intron 40.0%
TAGGATAGTCCAGTAGTTAG+GGG + chr4_2:924256-924275 Msa0582430:intron 40.0%
! TAATCAAGCCTTATCGCACT+AGG - chr4_2:924408-924427 None:intergenic 40.0%
!! TAGTGTTTTGTTGGGGCAAA+TGG + chr4_2:924584-924603 Msa0582430:intron 40.0%
! ATGTGCTGACCTATGAAGTA+CGG + chr4_2:924819-924838 Msa0582430:intron 40.0%
ACTCTTGTATCTACAGTGTG+TGG + chr4_2:925149-925168 Msa0582430:intron 40.0%
TTTGTCTGAATTGTCCGACA+CGG + chr4_2:925202-925221 Msa0582430:intron 40.0%
! TTTATTTAGGACACCGGTCT+TGG + chr4_2:925291-925310 Msa0582430:intron 40.0%
! GTGACTTTAGAAGTAGGAAG+AGG - chr4_2:925504-925523 None:intergenic 40.0%
! ACATGATTGGTTGTGATGTG+CGG + chr4_2:924804-924823 Msa0582430:intron 40.0%
TTGGATGGATGATCACGATA+TGG + chr4_2:925747-925766 Msa0582430:intron 40.0%
! CCGTGCTTTTATGACCAAAA+GGG - chr4_2:925949-925968 None:intergenic 40.0%
! CCCTTTTGGTCATAAAAGCA+CGG + chr4_2:925946-925965 Msa0582430:intron 40.0%
!! CCTTTTGGTCATAAAAGCAC+GGG + chr4_2:925947-925966 Msa0582430:intron 40.0%
AAATGGAGGAAGAAAGGGTT+AGG + chr4_2:925981-926000 Msa0582430:intron 40.0%
! ATCTTTAGTCTTCCCTGCAT+TGG + chr4_2:926066-926085 Msa0582430:intron 40.0%
! TCTTTAGTCTTCCCTGCATT+GGG + chr4_2:926067-926086 Msa0582430:intron 40.0%
AAAGTCATGTACCAGAAGCA+TGG + chr4_2:926188-926207 Msa0582430:CDS 40.0%
! ATAGCACTGTGTACTTTTGC+AGG + chr4_2:926331-926350 Msa0582430:intron 40.0%
AGGAAAATCAGGAGATTCAG+TGG + chr4_2:926351-926370 Msa0582430:intron 40.0%
GGAAAATCAGGAGATTCAGT+GGG + chr4_2:926352-926371 Msa0582430:intron 40.0%
!! GAGAAGTATCAATCCTGATG+AGG + chr4_2:926464-926483 Msa0582430:intron 40.0%
!!! TTTAGTTTTGGCTGGGATGA+GGG + chr4_2:926565-926584 Msa0582430:intron 40.0%
CCAATAAGAAGGCAACTATC+TGG - chr4_2:926659-926678 None:intergenic 40.0%
CCAGATAGTTGCCTTCTTAT+TGG + chr4_2:926656-926675 Msa0582430:intron 40.0%
! TTTTCAACAGTGTTCCCTTG+AGG - chr4_2:927188-927207 None:intergenic 40.0%
! CTTGCTGTATGTTTGTACCA+CGG + chr4_2:927326-927345 Msa0582430:intron 40.0%
GTACTCTAGTCGACGAAAAA+AGG - chr4_2:927356-927375 None:intergenic 40.0%
! CATGTGTCATTACTCAGTGA+TGG + chr4_2:927438-927457 Msa0582430:intron 40.0%
CATTGAAATGGCCGCAATAA+TGG + chr4_2:927494-927513 Msa0582430:intron 40.0%
TGCCCATAACCTAAGGAATA+TGG + chr4_2:927558-927577 Msa0582430:intron 40.0%
GCTCCATATTCCTTAGGTTA+TGG - chr4_2:927564-927583 None:intergenic 40.0%
!! TTTAAAGTCCTTGGTGTTGC+AGG - chr4_2:927677-927696 None:intergenic 40.0%
GCAGGATAATGTCAAGAGTA+TGG + chr4_2:927805-927824 Msa0582430:intron 40.0%
ACAGGCCTTTCAATTATCTC+TGG + chr4_2:927892-927911 Msa0582430:CDS 40.0%
AAAGAAAAAGTAATGCCGCC+AGG - chr4_2:927987-928006 None:intergenic 40.0%
CTAGCAGTCACATATTAACG+GGG - chr4_2:928051-928070 None:intergenic 40.0%
ATGTGACTGCTAGTAATCCA+AGG + chr4_2:928058-928077 Msa0582430:intron 40.0%
AAACAAAACGAGGCAAAAGC+TGG - chr4_2:928132-928151 None:intergenic 40.0%
AATTTAGTGAGATCCTGGAG+GGG - chr4_2:928189-928208 None:intergenic 40.0%
!! AAAGGGCATTATGCTTGGTT+TGG + chr4_2:928211-928230 Msa0582430:intron 40.0%
! CACCATACGACTCTTTTTCT+TGG + chr4_2:928344-928363 Msa0582430:intron 40.0%
TCCCAAGAAAAAGAGTCGTA+TGG - chr4_2:928349-928368 None:intergenic 40.0%
AGGAAAAAGGCTTGCCAATT+AGG - chr4_2:928429-928448 None:intergenic 40.0%
AGTCAGCTGGGTAATAAATG+AGG + chr4_2:928519-928538 Msa0582430:intron 40.0%
TCTTTACCCGATTCTGTGAT+AGG + chr4_2:928619-928638 Msa0582430:intron 40.0%
ACTGTAGCCTATCACAGAAT+CGG - chr4_2:928629-928648 None:intergenic 40.0%
CAGGAATTATTCTCTGGTGA+GGG - chr4_2:928753-928772 None:intergenic 40.0%
GATCACCAGGAATTATTCTC+TGG - chr4_2:928759-928778 None:intergenic 40.0%
ATTCTGTTAGAAGTGAGAGC+GGG - chr4_2:928781-928800 None:intergenic 40.0%
! TGAGGGAAATGACTTGTACA+CGG - chr4_2:928854-928873 None:intergenic 40.0%
GGAGGAGGAAAAAAGGATAA+AGG - chr4_2:929076-929095 None:intergenic 40.0%
ATGGTGATCATTGTGCAATG+AGG - chr4_2:929097-929116 None:intergenic 40.0%
TTCCTGTACTGTTTCAGTGT+TGG + chr4_2:929216-929235 Msa0582430:intron 40.0%
! TGTACTGTTTCAGTGTTGGA+CGG + chr4_2:929220-929239 Msa0582430:intron 40.0%
AAGCTTCAGTGTCAAGTTTG+TGG - chr4_2:929262-929281 None:intergenic 40.0%
AGGCTTCTGAATCATCAAAC+AGG + chr4_2:929417-929436 Msa0582430:CDS 40.0%
GGCTTCTGAATCATCAAACA+GGG + chr4_2:929418-929437 Msa0582430:CDS 40.0%
TATGAAGTAGCTCTCTCCAT+TGG - chr4_2:929541-929560 None:intergenic 40.0%
AGAGCTACTTCATATGCAAC+AGG + chr4_2:929547-929566 Msa0582430:CDS 40.0%
ATGCTCAGGAATTTCACAAG+TGG + chr4_2:929684-929703 Msa0582430:three_prime_UTR 40.0%
! CATTTTGTAACGACGACTCT+CGG - chr4_2:929800-929819 None:intergenic 40.0%
TGCTAGAAACTAGTTGTGCA+CGG + chr4_2:929895-929914 Msa0582430:three_prime_UTR 40.0%
AGATATTTGATCTGCGGAAG+AGG - chr4_2:930023-930042 None:intergenic 40.0%
TCCGCAGATCAAATATCTGA+TGG + chr4_2:930025-930044 Msa0582430:three_prime_UTR 40.0%
GCAGATCAAATATCTGATGG+AGG + chr4_2:930028-930047 Msa0582430:three_prime_UTR 40.0%
TATCTGATGGAGGTTTAGAC+GGG + chr4_2:930038-930057 Msa0582430:three_prime_UTR 40.0%
!! TTAGACGGGTTGTATCATCA+AGG + chr4_2:930052-930071 Msa0582430:three_prime_UTR 40.0%
TTCAACAGAGAAACTGTAGC+TGG - chr4_2:930110-930129 None:intergenic 40.0%
!! TCAGTAGTTCTAACTGTGCT+GGG - chr4_2:930240-930259 None:intergenic 40.0%
!! ATCAGTAGTTCTAACTGTGC+TGG - chr4_2:930241-930260 None:intergenic 40.0%
GTTGAAAACGGGATTTGAGG+AGG - chr4_2:921952-921971 None:intergenic 45.0%
GATCTTCTCAAAGGAGGACT+AGG - chr4_2:922187-922206 None:intergenic 45.0%
CTCTCAGATCTTCTCAAAGG+AGG - chr4_2:922193-922212 None:intergenic 45.0%
!! GGGTAGTAATGAGTTGGTAG+AGG + chr4_2:922416-922435 Msa0582430:intron 45.0%
GAGGTAGTTGGAGTTGTTAG+GGG + chr4_2:922435-922454 Msa0582430:intron 45.0%
! TCAAAGACCGACTCTTCTGA+TGG + chr4_2:922542-922561 Msa0582430:intron 45.0%
GTTTGTGTTAGTGTCGTGTC+CGG + chr4_2:922722-922741 Msa0582430:intron 45.0%
TTGGTTGCCAGATTGCAACA+AGG + chr4_2:923094-923113 Msa0582430:intron 45.0%
TCTGTCTCCTTGTTGCAATC+TGG - chr4_2:923104-923123 None:intergenic 45.0%
GACTCCAGAAGATAGCAACA+TGG + chr4_2:923139-923158 Msa0582430:CDS 45.0%
TCACCCATGTTGCTATCTTC+TGG - chr4_2:923146-923165 None:intergenic 45.0%
AGAAGATAGCAACATGGGTG+AGG + chr4_2:923145-923164 Msa0582430:CDS 45.0%
AACATGGGTGAGGACAAGAT+TGG + chr4_2:923155-923174 Msa0582430:CDS 45.0%
ATCTGAAGAAGGCAAAGCGA+CGG + chr4_2:923238-923257 Msa0582430:CDS 45.0%
TGCAATGTTGTAGAGACCAG+TGG + chr4_2:923614-923633 Msa0582430:CDS 45.0%
GCAATGTTGTAGAGACCAGT+GGG + chr4_2:923615-923634 Msa0582430:CDS 45.0%
!! TGTTGATACCGACTCCTAAC+TGG + chr4_2:923851-923870 Msa0582430:intron 45.0%
CTGGTCAACCCTCCTTATTA+AGG - chr4_2:924233-924252 None:intergenic 45.0%
CTTAATAAGGAGGGTTGACC+AGG + chr4_2:924231-924250 Msa0582430:intron 45.0%
TGAAGGCCTAAAACCAGAGT+AGG + chr4_2:924495-924514 Msa0582430:intron 45.0%
!!! CTACCTCCTACTCTGGTTTT+AGG - chr4_2:924504-924523 None:intergenic 45.0%
ACTTCTTCTACCTCCTACTC+TGG - chr4_2:924511-924530 None:intergenic 45.0%
!! TGTTTTGTTGGGGCAAATGG+AGG + chr4_2:924587-924606 Msa0582430:intron 45.0%
TGGAGGCGAAGGAAACAAAA+TGG + chr4_2:924604-924623 Msa0582430:intron 45.0%
AACACTCATAAGAGCCGTGT+CGG - chr4_2:925219-925238 None:intergenic 45.0%
TTACTTCGACACTCCTAGAC+CGG - chr4_2:925258-925277 None:intergenic 45.0%
ATGTGTCGTACGAGTGTCAT+AGG + chr4_2:925323-925342 Msa0582430:intron 45.0%
! TACGAGTGTCATAGGAGTGT+TGG + chr4_2:925331-925350 Msa0582430:intron 45.0%
TATGAAGCACGGATACCTCT+AGG - chr4_2:925376-925395 None:intergenic 45.0%
!! TAGAGGTATCCGTGCTTCAT+AGG + chr4_2:925375-925394 Msa0582430:intron 45.0%
! CCCGTGCTTTTATGACCAAA+AGG - chr4_2:925950-925969 None:intergenic 45.0%
! TCATGTACCAGAAGCATGGA+AGG + chr4_2:926192-926211 Msa0582430:CDS 45.0%
CACAGTGCTATCAGAAGCTA+TGG - chr4_2:926322-926341 None:intergenic 45.0%
! GATGCATCCCCTTTTACTTG+AGG + chr4_2:926486-926505 Msa0582430:intron 45.0%
CCTCATGCCTCAAGTAAAAG+GGG - chr4_2:926496-926515 None:intergenic 45.0%
GCCTCATGCCTCAAGTAAAA+GGG - chr4_2:926497-926516 None:intergenic 45.0%
TGCCTCATGCCTCAAGTAAA+AGG - chr4_2:926498-926517 None:intergenic 45.0%
!!! GTTTAGTTTTGGCTGGGATG+AGG + chr4_2:926564-926583 Msa0582430:intron 45.0%
TGCCTCAATCTCAAACGTGT+AGG - chr4_2:926633-926652 None:intergenic 45.0%
CAGCAGTAGAGTTGTCAATC+TGG + chr4_2:926745-926764 Msa0582430:intron 45.0%
! TTGTCAATCTGGCTTATCCG+AGG + chr4_2:926756-926775 Msa0582430:intron 45.0%
! TGTCAATCTGGCTTATCCGA+GGG + chr4_2:926757-926776 Msa0582430:intron 45.0%
TAGGTGGCTTCACACATCTT+TGG + chr4_2:926845-926864 Msa0582430:intron 45.0%
! ATGAGGAGAAAGGCATGTTG+AGG - chr4_2:927087-927106 None:intergenic 45.0%
! TCACAGAGCTTTGCTATCTC+TGG - chr4_2:927257-927276 None:intergenic 45.0%
GTACGTGCTCCATATTCCTT+AGG - chr4_2:927570-927589 None:intergenic 45.0%
GTCTGTTGCTGCTACCTAAT+TGG + chr4_2:928412-928431 Msa0582430:intron 45.0%
AACCAATGCCTACATGCATG+TGG - chr4_2:928559-928578 None:intergenic 45.0%
!! GCATGTAGGCATTGGTTTCA+TGG + chr4_2:928562-928581 Msa0582430:intron 45.0%
CTGTAGCCTATCACAGAATC+GGG - chr4_2:928628-928647 None:intergenic 45.0%
CCAGGAATTATTCTCTGGTG+AGG - chr4_2:928754-928773 None:intergenic 45.0%
CCTCACCAGAGAATAATTCC+TGG + chr4_2:928751-928770 Msa0582430:intron 45.0%
AAGGAATGAGGGAAGAGAGT+GGG - chr4_2:928816-928835 None:intergenic 45.0%
TAAGGAATGAGGGAAGAGAG+TGG - chr4_2:928817-928836 None:intergenic 45.0%
! GAGGGAAATGACTTGTACAC+GGG - chr4_2:928853-928872 None:intergenic 45.0%
!! GAATAATGGACCGATTGAGC+TGG - chr4_2:928881-928900 None:intergenic 45.0%
GCAATGAGGAGGAGGAAAAA+AGG - chr4_2:929083-929102 None:intergenic 45.0%
ATCATTGTGCAATGAGGAGG+AGG - chr4_2:929091-929110 None:intergenic 45.0%
GTGATCATTGTGCAATGAGG+AGG - chr4_2:929094-929113 None:intergenic 45.0%
GTCCAACACTGAAACAGTAC+AGG - chr4_2:929221-929240 None:intergenic 45.0%
!! GTGCTGCTTTGCAAGAATGA+GGG - chr4_2:929285-929304 None:intergenic 45.0%
!! AGTGCTGCTTTGCAAGAATG+AGG - chr4_2:929286-929305 None:intergenic 45.0%
!! TGCAATGCTTTGGGATCTGA+AGG + chr4_2:929346-929365 Msa0582430:CDS 45.0%
CAGTGTCAATTGCTCTCCAA+AGG + chr4_2:929397-929416 Msa0582430:CDS 45.0%
AGAAGAAGAACGAGATGCTC+AGG + chr4_2:929670-929689 Msa0582430:three_prime_UTR 45.0%
!! AATGTTCGGTCTCTAGAGCA+CGG - chr4_2:929758-929777 None:intergenic 45.0%
!! TGCTCTAGAGACCGAACATT+TGG + chr4_2:929758-929777 Msa0582430:three_prime_UTR 45.0%
AGACCGAACATTTGGAAGCA+AGG + chr4_2:929766-929785 Msa0582430:three_prime_UTR 45.0%
CTGCCTTGCTTCCAAATGTT+CGG - chr4_2:929772-929791 None:intergenic 45.0%
GCTAGAAACTAGTTGTGCAC+GGG + chr4_2:929896-929915 Msa0582430:three_prime_UTR 45.0%
TCAGTACTTCTGACTGTGCT+GGG - chr4_2:929981-930000 None:intergenic 45.0%
ATCAGTACTTCTGACTGTGC+TGG - chr4_2:929982-930001 None:intergenic 45.0%
GTAGCTGGATGACCATTACT+TGG - chr4_2:930095-930114 None:intergenic 45.0%
ATCTGTCCACCAGTTATGGT+CGG - chr4_2:930171-930190 None:intergenic 45.0%
TGGTATCTGTCCACCAGTTA+TGG - chr4_2:930175-930194 None:intergenic 45.0%
TTCAAAGGAGCTGCATTCTC+TGG - chr4_2:930267-930286 None:intergenic 45.0%
!!! AAAATGAATATAATTTTTAT+AGG + chr4_2:923783-923802 Msa0582430:intron 5.0%
!!! AAATGAATATAATTTTTATA+GGG + chr4_2:923784-923803 Msa0582430:intron 5.0%
TTTGAGGAGGCGAGGATTGA+GGG - chr4_2:921939-921958 None:intergenic 50.0%
ATTTGAGGAGGCGAGGATTG+AGG - chr4_2:921940-921959 None:intergenic 50.0%
! AGACCGACTCTTCTGATGGA+AGG + chr4_2:922546-922565 Msa0582430:intron 50.0%
ACGCCTTCCATCAGAAGAGT+CGG - chr4_2:922552-922571 None:intergenic 50.0%
TGTTAGACACCGACCCATGT+CGG - chr4_2:922595-922614 None:intergenic 50.0%
AGTGACACATCTGACCGACA+TGG + chr4_2:922619-922638 Msa0582430:intron 50.0%
GTGACACATCTGACCGACAT+GGG + chr4_2:922620-922639 Msa0582430:intron 50.0%
TGTCAGACACTGACCCATGT+CGG - chr4_2:922636-922655 None:intergenic 50.0%
! TGGTGTTGAGTGAGGTGTGT+TGG + chr4_2:923019-923038 Msa0582430:intron 50.0%
!! GATTGGCGAGTGCTCTAAAG+AGG + chr4_2:923172-923191 Msa0582430:CDS 50.0%
! GTCGCTTTGCCTTCTTCAGA+TGG - chr4_2:923239-923258 None:intergenic 50.0%
AAGGCAAAGCGACGGATATG+AGG + chr4_2:923246-923265 Msa0582430:CDS 50.0%
CAAAGCGACGGATATGAGGA+CGG + chr4_2:923250-923269 Msa0582430:CDS 50.0%
! AGCGACTTTAGGTTCAGCAG+TGG + chr4_2:923316-923335 Msa0582430:CDS 50.0%
GCAGCAAAGCTTTACAGGGT+CGG - chr4_2:923597-923616 None:intergenic 50.0%
!! TATCCTTTTGGAAGGCCCAC+TGG - chr4_2:923633-923652 None:intergenic 50.0%
GTGGGCCTTCCAAAAGGATA+AGG + chr4_2:923633-923652 Msa0582430:CDS 50.0%
CTACTGGACTATCCTACACC+TGG - chr4_2:924252-924271 None:intergenic 50.0%
AGTCCAGTAGTTAGGGGTTG+AGG + chr4_2:924262-924281 Msa0582430:intron 50.0%
CTTCCTCAACCCCTAACTAC+TGG - chr4_2:924268-924287 None:intergenic 50.0%
CTTATCGCACTAGGTGGGAT+TGG - chr4_2:924399-924418 None:intergenic 50.0%
CAATCCCACCTAGTGCGATA+AGG + chr4_2:924397-924416 Msa0582430:intron 50.0%
! CAAGCCTTATCGCACTAGGT+GGG - chr4_2:924404-924423 None:intergenic 50.0%
! TCAAGCCTTATCGCACTAGG+TGG - chr4_2:924405-924424 None:intergenic 50.0%
!!! CTCTGGTTTTAGGCCTTCAG+AGG - chr4_2:924494-924513 None:intergenic 50.0%
AGGCCTAAAACCAGAGTAGG+AGG + chr4_2:924498-924517 Msa0582430:intron 50.0%
TGTCGGAGTCCGTACTTCAT+AGG - chr4_2:924831-924850 None:intergenic 50.0%
ATGAAGTACGGACTCCGACA+CGG + chr4_2:924831-924850 Msa0582430:intron 50.0%
CACCTGAAAGGACACTGACA+CGG + chr4_2:924855-924874 Msa0582430:intron 50.0%
!! GTTGTACAAGTGTCGGACAC+CGG + chr4_2:925236-925255 Msa0582430:intron 50.0%
ACATGTCGGACAACCAAGAC+CGG - chr4_2:925307-925326 None:intergenic 50.0%
GACACTCGTACGACACATGT+CGG - chr4_2:925321-925340 None:intergenic 50.0%
TCACTGACCTTCCATGCTTC+TGG - chr4_2:926202-926221 None:intergenic 50.0%
AAAGGGGATGCATCCTCATC+AGG - chr4_2:926480-926499 None:intergenic 50.0%
! CCCCTTTTACTTGAGGCATG+AGG + chr4_2:926493-926512 Msa0582430:intron 50.0%
! GGCCTACACGTTTGAGATTG+AGG + chr4_2:926628-926647 Msa0582430:intron 50.0%
GTGGCTTCACACATCTTTGG+TGG + chr4_2:926848-926867 Msa0582430:intron 50.0%
! AGAAAGGCATGTTGAGGCAG+CGG - chr4_2:927081-927100 None:intergenic 50.0%
CGACGAAAAAAGGACAACCG+TGG - chr4_2:927346-927365 None:intergenic 50.0%
!! CTTGGTGTTGCAGGCAAAGT+TGG - chr4_2:927668-927687 None:intergenic 50.0%
CAACTTTGCCTGCAACACCA+AGG + chr4_2:927666-927685 Msa0582430:intron 50.0%
AAAGTAATGCCGCCAGGCTA+AGG - chr4_2:927981-928000 None:intergenic 50.0%
TGAATTATTGCCTCCCCTCC+AGG + chr4_2:928173-928192 Msa0582430:intron 50.0%
TCAAGCCTCCACATGCATGT+AGG + chr4_2:928548-928567 Msa0582430:intron 50.0%
CAATGCCTACATGCATGTGG+AGG - chr4_2:928556-928575 None:intergenic 50.0%
CTCCACATGCATGTAGGCAT+TGG + chr4_2:928554-928573 Msa0582430:intron 50.0%
AGTTATCAGCCCCAGACAAG+TGG + chr4_2:928725-928744 Msa0582430:intron 50.0%
! GAAGAGAGTGGGCTTCATTC+TGG - chr4_2:928805-928824 None:intergenic 50.0%
AGGCTTGGCAGGTTTCCTAT+AGG - chr4_2:928915-928934 None:intergenic 50.0%
TAGGAAACCTGCCAAGCCTT+TGG + chr4_2:928916-928935 Msa0582430:intron 50.0%
TGATACCAAGTCCTGATGGC+AGG - chr4_2:928943-928962 None:intergenic 50.0%
CAGCTGATACCAAGTCCTGA+TGG - chr4_2:928947-928966 None:intergenic 50.0%
! CATCAGGACTTGGTATCAGC+TGG + chr4_2:928945-928964 Msa0582430:intron 50.0%
! CTCAGAAGCGCAAAGACCAA+TGG + chr4_2:929522-929541 Msa0582430:CDS 50.0%
! CACTGCCAGTGAGTTGAGTA+GGG + chr4_2:929920-929939 Msa0582430:three_prime_UTR 50.0%
AGTGTCTTGCCGACCATAAC+TGG + chr4_2:930159-930178 Msa0582430:three_prime_UTR 50.0%
! TGGTGGACAGATACCAGTCA+TGG + chr4_2:930179-930198 Msa0582430:three_prime_UTR 50.0%
ATGGTGCCCAGAATCGAGAA+GGG + chr4_2:930198-930217 Msa0582430:three_prime_UTR 50.0%
CTGCATCCCTTCTCGATTCT+GGG - chr4_2:930207-930226 None:intergenic 50.0%
TTGAGGAGGCGAGGATTGAG+GGG - chr4_2:921938-921957 None:intergenic 55.0%
AAACGGGATTTGAGGAGGCG+AGG - chr4_2:921947-921966 None:intergenic 55.0%
! CTTCTGATGGAAGGCGTGTC+TGG + chr4_2:922555-922574 Msa0582430:intron 55.0%
AGACCAGTGGGCCTTCCAAA+AGG + chr4_2:923627-923646 Msa0582430:CDS 55.0%
AAGGAGGGTTGACCAGGTGT+AGG + chr4_2:924237-924256 Msa0582430:intron 55.0%
!! ACTAGGTGGGATTGGCTGCA+TGG - chr4_2:924391-924410 None:intergenic 55.0%
! GTCCTTTCAGGTGTCCGTGT+CGG - chr4_2:924848-924867 None:intergenic 55.0%
GTCCGTGTCAGTGTCCTTTC+AGG - chr4_2:924860-924879 None:intergenic 55.0%
GCACGGATACCTCTAGGTCT+AGG - chr4_2:925370-925389 None:intergenic 55.0%
CTGTCAGCGCCTATGAAGCA+CGG - chr4_2:925387-925406 None:intergenic 55.0%
CAGTTTCCCCTACCTTAGCC+TGG + chr4_2:927966-927985 Msa0582430:intron 55.0%
TTTCCCCTACCTTAGCCTGG+CGG + chr4_2:927969-927988 Msa0582430:intron 55.0%
AATGCCGCCAGGCTAAGGTA+GGG - chr4_2:927976-927995 None:intergenic 55.0%
TAATGCCGCCAGGCTAAGGT+AGG - chr4_2:927977-927996 None:intergenic 55.0%
TTAGTGAGATCCTGGAGGGG+AGG - chr4_2:928186-928205 None:intergenic 55.0%
TCCTGGGTAGCATAGTCAGC+TGG + chr4_2:928506-928525 Msa0582430:intron 55.0%
CCTGGGTAGCATAGTCAGCT+GGG + chr4_2:928507-928526 Msa0582430:intron 55.0%
GTGAGGGAACCACTTGTCTG+GGG - chr4_2:928737-928756 None:intergenic 55.0%
GGTGAGGGAACCACTTGTCT+GGG - chr4_2:928738-928757 None:intergenic 55.0%
TGGTGAGGGAACCACTTGTC+TGG - chr4_2:928739-928758 None:intergenic 55.0%
CCGATTGAGCTGGCAAGTGA+GGG - chr4_2:928871-928890 None:intergenic 55.0%
CCCTCACTTGCCAGCTCAAT+CGG + chr4_2:928868-928887 Msa0582430:intron 55.0%
ACCGATTGAGCTGGCAAGTG+AGG - chr4_2:928872-928891 None:intergenic 55.0%
TGATGGCAGGTCCAAAGGCT+TGG - chr4_2:928930-928949 None:intergenic 55.0%
AAGCCTTTGGACCTGCCATC+AGG + chr4_2:928929-928948 Msa0582430:intron 55.0%
AGTCCTGATGGCAGGTCCAA+AGG - chr4_2:928935-928954 None:intergenic 55.0%
TTGGACCTGCCATCAGGACT+TGG + chr4_2:928935-928954 Msa0582430:intron 55.0%
CCTACTCAACTCACTGGCAG+TGG - chr4_2:929922-929941 None:intergenic 55.0%
! CCACTGCCAGTGAGTTGAGT+AGG + chr4_2:929919-929938 Msa0582430:three_prime_UTR 55.0%
! TGCCAGTGAGTTGAGTAGGG+AGG + chr4_2:929923-929942 Msa0582430:three_prime_UTR 55.0%
TGCCTCCCTACTCAACTCAC+TGG - chr4_2:929928-929947 None:intergenic 55.0%
GGAAGAGGAGCTGCATTCTC+TGG - chr4_2:930008-930027 None:intergenic 55.0%
GTCTTGCCGACCATAACTGG+TGG + chr4_2:930162-930181 Msa0582430:three_prime_UTR 55.0%
TCGATTCTGGGCACCATGAC+TGG - chr4_2:930195-930214 None:intergenic 55.0%
CATGGTGCCCAGAATCGAGA+AGG + chr4_2:930197-930216 Msa0582430:three_prime_UTR 55.0%
GCTGCATCCCTTCTCGATTC+TGG - chr4_2:930208-930227 None:intergenic 55.0%
ATCGAGAAGGGATGCAGCTG+TGG + chr4_2:930210-930229 Msa0582430:three_prime_UTR 55.0%
GCGTGTCTGGTGTCCGACAT+GGG + chr4_2:922568-922587 Msa0582430:intron 60.0%
TGTCCGACATGGGTCCGACA+TGG + chr4_2:922578-922597 Msa0582430:intron 60.0%
GTCCGACATGGGTCCGACAT+GGG + chr4_2:922579-922598 Msa0582430:intron 60.0%
GACCCATGTCGGACCCATGT+CGG - chr4_2:922584-922603 None:intergenic 60.0%
GACATGGGTCCGACATGGGT+CGG + chr4_2:922583-922602 Msa0582430:intron 60.0%
! AGGACGGAGTCTAGCTCGAG+TGG + chr4_2:923266-923285 Msa0582430:CDS 60.0%
! GGACGGAGTCTAGCTCGAGT+GGG + chr4_2:923267-923286 Msa0582430:CDS 60.0%
AACCAAGGGCGGAGCCAGTT+AGG - chr4_2:923868-923887 None:intergenic 60.0%
GTTGGGGCAAATGGAGGCGA+AGG + chr4_2:924593-924612 Msa0582430:intron 60.0%
CTCCGACACGGACACCTGAA+AGG + chr4_2:924843-924862 Msa0582430:intron 60.0%
!! CAAGTGTCGGACACCGGTCT+AGG + chr4_2:925242-925261 Msa0582430:intron 60.0%
TGCGACACGCCTAGACCTAG+AGG + chr4_2:925358-925377 Msa0582430:intron 60.0%
ATGCCGCCAGGCTAAGGTAG+GGG - chr4_2:927975-927994 None:intergenic 60.0%
CCCAGCTGACTATGCTACCC+AGG - chr4_2:928510-928529 None:intergenic 60.0%
GAAGTGAGAGCGGGATCACC+AGG - chr4_2:928772-928791 None:intergenic 60.0%
CAAGTGTGGCCTGCACTCAC+AGG - chr4_2:929958-929977 None:intergenic 60.0%
CTGACTGTGCTGGGCAAGTG+TGG - chr4_2:929972-929991 None:intergenic 60.0%
GGCGTGTCTGGTGTCCGACA+TGG + chr4_2:922567-922586 Msa0582430:intron 65.0%
GGGCGGAGCCAGTTAGGAGT+CGG - chr4_2:923862-923881 None:intergenic 65.0%
! CTCCTAACTGGCTCCGCCCT+TGG + chr4_2:923863-923882 Msa0582430:intron 65.0%
GGCAGGTCCAAAGGCTTGGC+AGG - chr4_2:928926-928945 None:intergenic 65.0%
CAGCTGCAGCCTGTGAGTGC+AGG + chr4_2:929946-929965 Msa0582430:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 921905 930344 921905 ID=Msa0582430;Name=Msa0582430
chr4_2 mRNA 921905 930344 921905 ID=Msa0582430-mRNA-1;Parent=Msa0582430;Name=Msa0582430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=228|0.83|1|1|0.83|0.71|7|705|464
chr4_2 exon 921905 922301 921905 ID=Msa0582430-mRNA-1:exon:160;Parent=Msa0582430-mRNA-1
chr4_2 exon 923105 923654 923105 ID=Msa0582430-mRNA-1:exon:161;Parent=Msa0582430-mRNA-1
chr4_2 exon 926143 926213 926143 ID=Msa0582430-mRNA-1:exon:162;Parent=Msa0582430-mRNA-1
chr4_2 exon 927180 927292 927180 ID=Msa0582430-mRNA-1:exon:163;Parent=Msa0582430-mRNA-1
chr4_2 exon 927809 927913 927809 ID=Msa0582430-mRNA-1:exon:164;Parent=Msa0582430-mRNA-1
chr4_2 exon 929233 929967 929233 ID=Msa0582430-mRNA-1:exon:165;Parent=Msa0582430-mRNA-1
chr4_2 exon 929988 930344 929988 ID=Msa0582430-mRNA-1:exon:166;Parent=Msa0582430-mRNA-1
chr4_2 five_prime_UTR 921905 922132 921905 ID=Msa0582430-mRNA-1:five_prime_utr;Parent=Msa0582430-mRNA-1
chr4_2 CDS 922133 922301 922133 ID=Msa0582430-mRNA-1:cds;Parent=Msa0582430-mRNA-1
chr4_2 CDS 923105 923654 923105 ID=Msa0582430-mRNA-1:cds;Parent=Msa0582430-mRNA-1
chr4_2 CDS 926143 926213 926143 ID=Msa0582430-mRNA-1:cds;Parent=Msa0582430-mRNA-1
chr4_2 CDS 927180 927292 927180 ID=Msa0582430-mRNA-1:cds;Parent=Msa0582430-mRNA-1
chr4_2 CDS 927809 927913 927809 ID=Msa0582430-mRNA-1:cds;Parent=Msa0582430-mRNA-1
chr4_2 CDS 929233 929619 929233 ID=Msa0582430-mRNA-1:cds;Parent=Msa0582430-mRNA-1
chr4_2 three_prime_UTR 929620 929967 929620 ID=Msa0582430-mRNA-1:three_prime_utr;Parent=Msa0582430-mRNA-1
chr4_2 three_prime_UTR 929988 930344 929988 ID=Msa0582430-mRNA-1:three_prime_utr;Parent=Msa0582430-mRNA-1
Gene Sequence

>Msa0582430

ATGGTTCCAAGTCCTTCTTCATCTAACAAGAAGATGAAATCAACATCAACACCTAGTCCTCCTTTGAGAAGATCTGAGAGAAATCGAAACGTTTCATCTTCCAATGGGAAATTTACTATTAGAGATTCTCGTATTTATCGTGCTATTTTAACTCAACCAAAAAAGAAAGATTGCAACAAGGAGACAGATAAGAAGGACAAGTCGACTCCAGAAGATAGCAACATGGGTGAGGACAAGATTGGCGAGTGCTCTAAAGAGGTTAGTTTAGATCGTCAAACAGTTTTTGAGGATTGTATTCTGCCATCTGAAGAAGGCAAAGCGACGGATATGAGGACGGAGTCTAGCTCGAGTGGGTCTGCGAAAGAACTATCTGCAAAGAAAGCGACTTTAGGTTCAGCAGTGGTACGATCTAATTCAACTGCACATGAGACTAGTGAGATACCTGAAAGAGTTCAGTCTGATTGCCATGAAAAGGAGACATCGCAAACGTTAGCAATTGGGGATTCTGATTCAAATGAAAGTTTGATTAGGAAATGTGTTGTAAATGAAAACGGTCAAAATTTGACACCTTCGAAAAGAAAAAGCACATTGGTGGACAAGCATTCTGATGTTTCTCCTAGAGTTATTGATGATGACAACTGCAAATTAATTGTGGATACCGACCCTGTAAAGCTTTGCTGCAATGTTGTAGAGACCAGTGGGCCTTCCAAAAGGATAAGGGGGATCAATAATGTTGATCAACCTGCTTCAAAATCTAATGATGAAAAGTCATGTACCAGAAGCATGGAAGAGAAACCTCAAGGGAACACTGTTGAAAATGAGAAAATAAGGACACTGCAGAGAAGCTTACATCGTTCACTGAAGCCAGAGATAGCAAAGCTCTGTGAAATTCTTCATCTCCCAGATAATGTCAAGAGTATGGTTGGAAAATTTCTTGAATATACGATTAACAATTACAAGATCTGTACAGAACCAGTATCAATATTACAGGCCTTTCAATTATCTCTGTGTTGGACGGCTGCTTCTCTGCTAAGCCACAAACTTGACACTGAAGCTTCCCTCATTCTTGCAAAGCAGCACTTGAATTTTGACTGTAAGAAAGGTGCCGTTGATGAAATTAATGCAATGCTTTGGGATCTGAAGGACAAGTTTTTATTACGCACAGGAAACTTCAGTGTCAATTGCTCTCCAAAGGCTTCTGAATCATCAAACAGGGTTCATTCAAACACAGATATAACATCAGATGTTGAATTGACCAAAAACGTTATTTCCAGAATTTCCAGAAATACTAAAGAAACTCAGAAGCGCAAAGACCAATGGAGAGAGCTACTTCATATGCAACAGGAAAACAAACTTAAGTTGCAAAAAGATTTGAGACCGAAATGGATGATTTAA
Protein sequence

>Msa0582430

MVPSPSSSNKKMKSTSTPSPPLRRSERNRNVSSSNGKFTIRDSRIYRAILTQPKKKDCNKETDKKDKSTPEDSNMGEDKIGECSKEVSLDRQTVFEDCILPSEEGKATDMRTESSSSGSAKELSAKKATLGSAVVRSNSTAHETSEIPERVQSDCHEKETSQTLAIGDSDSNESLIRKCVVNENGQNLTPSKRKSTLVDKHSDVSPRVIDDDNCKLIVDTDPVKLCCNVVETSGPSKRIRGINNVDQPASKSNDEKSCTRSMEEKPQGNTVENEKIRTLQRSLHRSLKPEIAKLCEILHLPDNVKSMVGKFLEYTINNYKICTEPVSILQAFQLSLCWTAASLLSHKLDTEASLILAKQHLNFDCKKGAVDEINAMLWDLKDKFLLRTGNFSVNCSPKASESSNRVHSNTDITSDVELTKNVISRISRNTKETQKRKDQWRELLHMQQENKLKLQKDLRPKWMI*