Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582990 | XP_013456557.1 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582990 | sp|Q9LT23|BH121_ARATH | 62.348 | 247 | 79 | 5 | 6 | 246 | 58 | 296 | 4.71e-94 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0582990 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0552960 | Msa0582990 | 0.889446 | 2.404605e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582990 | MtrunA17_Chr4g0038511 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| Msa0582990 | MtrunA17_Chr1g0161461 | 53.957 | 278 | 110 | 5 | 6 | 272 | 77 | 347 | 3.78e-92 | 276 |
| Msa0582990 | MtrunA17_Chr4g0042041 | 44.361 | 133 | 57 | 3 | 6 | 137 | 76 | 192 | 7.73e-25 | 99.4 |
| Msa0582990 | MtrunA17_Chr2g0319301 | 52.083 | 96 | 45 | 1 | 9 | 103 | 72 | 167 | 2.87e-23 | 95.1 |
| Msa0582990 | MtrunA17_Chr4g0060591 | 45.000 | 100 | 55 | 0 | 7 | 106 | 29 | 128 | 3.85e-21 | 89.4 |
| Msa0582990 | MtrunA17_Chr1g0167821 | 40.000 | 140 | 71 | 4 | 11 | 144 | 95 | 227 | 1.35e-18 | 82.8 |
| Msa0582990 | MtrunA17_Chr2g0323031 | 45.263 | 95 | 51 | 1 | 11 | 104 | 110 | 204 | 2.18e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582990 | AT3G19860.1 | 62.753 | 247 | 78 | 5 | 6 | 246 | 5 | 243 | 7.45e-96 | 284 |
| Msa0582990 | AT3G19860.3 | 62.753 | 247 | 78 | 5 | 6 | 246 | 36 | 274 | 1.74e-95 | 284 |
| Msa0582990 | AT3G19860.2 | 62.348 | 247 | 79 | 5 | 6 | 246 | 58 | 296 | 4.78e-95 | 283 |
| Msa0582990 | AT4G36060.2 | 43.636 | 275 | 105 | 7 | 9 | 274 | 29 | 262 | 6.93e-54 | 176 |
| Msa0582990 | AT4G36060.1 | 43.636 | 275 | 105 | 7 | 9 | 274 | 47 | 280 | 2.32e-53 | 175 |
| Msa0582990 | AT4G36060.4 | 44.255 | 235 | 89 | 5 | 9 | 235 | 29 | 229 | 8.97e-52 | 171 |
| Msa0582990 | AT4G36060.3 | 44.255 | 235 | 89 | 5 | 9 | 235 | 47 | 247 | 4.05e-51 | 169 |
| Msa0582990 | AT5G54680.1 | 37.975 | 158 | 70 | 4 | 11 | 167 | 76 | 206 | 8.65e-22 | 91.7 |
| Msa0582990 | AT4G14410.2 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.96e-18 | 83.2 |
| Msa0582990 | AT4G14410.3 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.96e-18 | 83.2 |
| Msa0582990 | AT4G14410.1 | 40.152 | 132 | 64 | 4 | 11 | 132 | 135 | 261 | 2.90e-18 | 82.8 |
| Msa0582990 | AT3G23210.2 | 35.606 | 132 | 77 | 2 | 11 | 134 | 138 | 269 | 6.53e-18 | 82.0 |
| Msa0582990 | AT1G51070.1 | 44.681 | 94 | 51 | 1 | 11 | 103 | 71 | 164 | 7.06e-18 | 80.9 |
| Msa0582990 | AT1G51070.2 | 44.681 | 94 | 51 | 1 | 11 | 103 | 137 | 230 | 1.57e-17 | 81.3 |
| Msa0582990 | AT3G23210.1 | 35.606 | 132 | 77 | 2 | 11 | 134 | 167 | 298 | 1.73e-17 | 81.3 |
| Msa0582990 | AT3G47640.1 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.63e-16 | 75.5 |
| Msa0582990 | AT3G47640.3 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.63e-16 | 75.5 |
| Msa0582990 | AT3G47640.2 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.63e-16 | 75.5 |
Find 96 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGAGAGTTTGTGATTA+AGG | 0.196287 | 4_2:+1331671 | None:intergenic |
| AATGATAAAGCGACCATTCT+AGG | 0.234923 | 4_2:-1332907 | Msa0582990:CDS |
| AATTGTATTCGGAGCTAAAA+AGG | 0.247255 | 4_2:+1332445 | None:intergenic |
| TATTTCATCTAGTCTTTGTT+TGG | 0.256862 | 4_2:-1331637 | Msa0582990:three_prime_UTR |
| CGAACTACCTTCTGTGAAAC+TGG | 0.280327 | 4_2:+1332096 | None:intergenic |
| TAATCACAAACTCTCCTAAA+AGG | 0.301913 | 4_2:-1331668 | Msa0582990:three_prime_UTR |
| TCCTTAGTTGCAGCTGATAC+TGG | 0.331417 | 4_2:+1332636 | None:intergenic |
| TTCAATTTGTCACAAGGAAT+AGG | 0.340147 | 4_2:+1331752 | None:intergenic |
| TGTTGTTCAACAATTGTATT+CGG | 0.342434 | 4_2:+1332434 | None:intergenic |
| TTCTTCATCTCACAGTGTTC+AGG | 0.343603 | 4_2:-1332062 | Msa0582990:CDS |
| GGTAGCCGGTCCCACGTATC+AGG | 0.344490 | 4_2:-1332377 | Msa0582990:CDS |
| ACCAGTATCAGCTGCAACTA+AGG | 0.363603 | 4_2:-1332637 | Msa0582990:CDS |
| TAGTGGAAGAGTTGTCGTTT+TGG | 0.365267 | 4_2:+1334015 | None:intergenic |
| AACAAGAACAAGAATAAGAT+TGG | 0.370287 | 4_2:-1333936 | Msa0582990:five_prime_UTR |
| TTAGGAGAGTTTGTGATTAA+GGG | 0.370502 | 4_2:+1331672 | None:intergenic |
| GATACGTGGGACCGGCTACC+TGG | 0.378928 | 4_2:+1332380 | None:intergenic |
| ACATATGTTGAACAAGGGTT+AGG | 0.393166 | 4_2:+1332470 | None:intergenic |
| TCTGAAATGCAGACCCTGAT+AGG | 0.394717 | 4_2:-1332936 | Msa0582990:intron |
| AGGATGTTGATTAGCATAGT+AGG | 0.395188 | 4_2:+1332502 | None:intergenic |
| TCTTTGAGCCTTGCTCTCCC+TGG | 0.396650 | 4_2:+1332328 | None:intergenic |
| GCAGGTACCGGCATTGGAAC+TGG | 0.401184 | 4_2:+1332551 | None:intergenic |
| TCCTGGGTCTTCCGCAGATC+AGG | 0.409087 | 4_2:-1332261 | Msa0582990:intron |
| GACCTTGAGTTGAAGACTCC+TGG | 0.425984 | 4_2:-1332278 | Msa0582990:CDS |
| GTTTACTAACTTGAGAAGTA+AGG | 0.433635 | 4_2:+1332860 | None:intergenic |
| CTAGCAGGTGTAATTTCCAT+TGG | 0.438402 | 4_2:+1333285 | None:intergenic |
| TTCTTTGAGTTGTGAGGGAA+AGG | 0.439952 | 4_2:-1331801 | Msa0582990:three_prime_UTR |
| TCTGTTCTCTCTTCTTAACT+AGG | 0.442611 | 4_2:-1331864 | Msa0582990:three_prime_UTR |
| GTTCAATTTCCAGTTGTCTC+AGG | 0.452373 | 4_2:-1332720 | Msa0582990:intron |
| CGCCTCTTCATCCAGGTAGC+CGG | 0.455426 | 4_2:-1332391 | Msa0582990:CDS |
| ATAACGGAATGATCCATTGC+AGG | 0.461908 | 4_2:+1332599 | None:intergenic |
| GGCTACCTGGATGAAGAGGC+GGG | 0.476225 | 4_2:+1332393 | None:intergenic |
| TTCACAGAAGGTAGTTCGTT+AGG | 0.482876 | 4_2:-1332091 | Msa0582990:CDS |
| GAACCAGCAGGTACCGGCAT+TGG | 0.486966 | 4_2:+1332545 | None:intergenic |
| AGGCTGACCGAGAAAAGTTA+AGG | 0.489877 | 4_2:-1333251 | Msa0582990:CDS |
| GTTCCAATGCCGGTACCTGC+TGG | 0.492349 | 4_2:-1332548 | Msa0582990:CDS |
| GGATGTTGATTAGCATAGTA+GGG | 0.493252 | 4_2:+1332503 | None:intergenic |
| GGTGAAAAGTGAAAGGATAG+TGG | 0.493351 | 4_2:+1333998 | None:intergenic |
| CATATGTTGAACAAGGGTTA+GGG | 0.508234 | 4_2:+1332471 | None:intergenic |
| ACCGGCATTGGAACTGGATA+CGG | 0.508537 | 4_2:+1332557 | None:intergenic |
| ACCTTGAGTTGAAGACTCCT+GGG | 0.508601 | 4_2:-1332277 | Msa0582990:CDS |
| ACAAGAACAAGAATAAGATT+GGG | 0.509441 | 4_2:-1333935 | Msa0582990:five_prime_UTR |
| AGCTCATCAAGTAGTGTAGT+GGG | 0.509577 | 4_2:-1332037 | Msa0582990:CDS |
| ACCCTCACAGCAGCTTCAAA+AGG | 0.510072 | 4_2:+1331961 | None:intergenic |
| GAAAATGTTGAACGTACGTC+TGG | 0.514766 | 4_2:-1331605 | Msa0582990:three_prime_UTR |
| TCCGTATCCAGTTCCAATGC+CGG | 0.524495 | 4_2:-1332558 | Msa0582990:CDS |
| GAATGATCCATTGCAGGCCA+TGG | 0.527462 | 4_2:+1332605 | None:intergenic |
| TGACAAATTGAAATTGCAGA+TGG | 0.531031 | 4_2:-1331741 | Msa0582990:three_prime_UTR |
| CAAATCATCCAGGGAGAGCA+AGG | 0.531527 | 4_2:-1332336 | Msa0582990:CDS |
| GAAAGGCTAGTGAATGAGAA+TGG | 0.532624 | 4_2:-1332009 | Msa0582990:exon |
| TGCAATTTCAATTTGTCACA+AGG | 0.534577 | 4_2:+1331746 | None:intergenic |
| ATCTAGTAAGTCGTCGAGGA+AGG | 0.538754 | 4_2:-1332122 | Msa0582990:CDS |
| TTGAACTGTATCTCCTAGAA+TGG | 0.541064 | 4_2:+1332894 | None:intergenic |
| AATGGATCATTCCGTTATGA+TGG | 0.543467 | 4_2:-1332594 | Msa0582990:CDS |
| GGAATTGAACCAGCAGGTAC+CGG | 0.545624 | 4_2:+1332539 | None:intergenic |
| ACCTGCTAGAAAGACACAAA+AGG | 0.554651 | 4_2:-1333271 | Msa0582990:CDS |
| CAAACTACATTTAGCCACAC+TGG | 0.555744 | 4_2:+1331700 | None:intergenic |
| GTATCCCCGCCTCTTCATCC+AGG | 0.556309 | 4_2:-1332398 | Msa0582990:CDS |
| TATGTATCCATGGCCTGCAA+TGG | 0.558315 | 4_2:-1332612 | Msa0582990:CDS |
| TAGTAGGGGTACGGCTGCAT+GGG | 0.560037 | 4_2:+1332518 | None:intergenic |
| ATAGTAGGGGTACGGCTGCA+TGG | 0.562866 | 4_2:+1332517 | None:intergenic |
| AACTAAGGACTATGTATCCA+TGG | 0.564461 | 4_2:-1332622 | Msa0582990:CDS |
| AAGGTCTGAAGTTGAACCAA+TGG | 0.569408 | 4_2:-1333301 | Msa0582990:exon |
| CGGCTACCTGGATGAAGAGG+CGG | 0.573692 | 4_2:+1332392 | None:intergenic |
| GCATCAACCATAGATAGATA+AGG | 0.576735 | 4_2:-1333889 | Msa0582990:intron |
| ACCCAGGAGTCTTCAACTCA+AGG | 0.576772 | 4_2:+1332276 | None:intergenic |
| TAGTGTAGTGGGGAGCAGAA+AGG | 0.578575 | 4_2:-1332026 | Msa0582990:CDS |
| TAGCTCATCAAGTAGTGTAG+TGG | 0.582065 | 4_2:-1332038 | Msa0582990:CDS |
| TGATTAGCATAGTAGGGGTA+CGG | 0.592321 | 4_2:+1332509 | None:intergenic |
| TTAAGAAGAGAGAACAGAAG+CGG | 0.601746 | 4_2:+1331869 | None:intergenic |
| AAGGGAACATATGTTGAACA+AGG | 0.603401 | 4_2:+1332464 | None:intergenic |
| GTTGAACGTACGTCTGGACT+CGG | 0.603755 | 4_2:-1331599 | Msa0582990:three_prime_UTR |
| GACCGGCTACCTGGATGAAG+AGG | 0.604106 | 4_2:+1332389 | None:intergenic |
| TTCTGCTGCAACTATTGTAG+AGG | 0.604657 | 4_2:-1331927 | Msa0582990:three_prime_UTR |
| GGAACTGGATACGGATATGT+TGG | 0.606135 | 4_2:+1332566 | None:intergenic |
| AAGGAAACCAGTTTCACAGA+AGG | 0.607572 | 4_2:-1332103 | Msa0582990:CDS |
| ACCTGATCTGCGGAAGACCC+AGG | 0.614780 | 4_2:+1332260 | None:intergenic |
| AGATACAGTTCAATTGCTGA+AGG | 0.616836 | 4_2:-1332884 | Msa0582990:CDS |
| TGTTGGTGGAGCCATCATAA+CGG | 0.621484 | 4_2:+1332583 | None:intergenic |
| CAAGGGTTAGGGATGACTGC+AGG | 0.622814 | 4_2:+1332482 | None:intergenic |
| AGGCGGGGATACGTATTGAG+TGG | 0.624785 | 4_2:+1332409 | None:intergenic |
| AAGACTAGATGAAATAAGCA+TGG | 0.625916 | 4_2:+1331644 | None:intergenic |
| GAGCAAGGCTCAAAGAAATG+AGG | 0.629493 | 4_2:-1332321 | Msa0582990:CDS |
| CTGACCGAGAAAAGTTAAGG+AGG | 0.634700 | 4_2:-1333248 | Msa0582990:CDS |
| AGCAGCACTAACCTGATCTG+CGG | 0.637188 | 4_2:+1332250 | None:intergenic |
| TGCATGGGAATTGAACCAGC+AGG | 0.642923 | 4_2:+1332533 | None:intergenic |
| GGATCACAGCAAGCAAACGA+CGG | 0.646485 | 4_2:+1334036 | None:intergenic |
| TGACCGAGAAAAGTTAAGGA+GGG | 0.651662 | 4_2:-1333247 | Msa0582990:CDS |
| GCTAAATGAAGAATCTCGTG+AGG | 0.654605 | 4_2:-1332818 | Msa0582990:intron |
| TGTGAGGGAAAGGCTGCGTG+AGG | 0.655698 | 4_2:-1331791 | Msa0582990:three_prime_UTR |
| ACTGGATACGGATATGTTGG+TGG | 0.657323 | 4_2:+1332569 | None:intergenic |
| AGTCTTCAACTCAAGGTCTG+TGG | 0.666361 | 4_2:+1332283 | None:intergenic |
| GATGTTGATTAGCATAGTAG+GGG | 0.671724 | 4_2:+1332504 | None:intergenic |
| GCTACCTGGATGAAGAGGCG+GGG | 0.673729 | 4_2:+1332394 | None:intergenic |
| AGGGAACATATGTTGAACAA+GGG | 0.680887 | 4_2:+1332465 | None:intergenic |
| GCTCATCAAGTAGTGTAGTG+GGG | 0.712201 | 4_2:-1332036 | Msa0582990:CDS |
| TCTTCAAGTTGAGACCAGTG+TGG | 0.762333 | 4_2:-1331714 | Msa0582990:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGCTCAAATTTTTAAA+AGG | + | chr4_2:1331917-1331936 | None:intergenic | 15.0% |
| !!! | TATAAATTGATTCAAATCAA+TGG | - | chr4_2:1332083-1332102 | Msa0582990:CDS | 15.0% |
| !!! | ATTGAATTATTTTGTGTTTT+TGG | - | chr4_2:1332329-1332348 | Msa0582990:CDS | 15.0% |
| !!! | ATCTTCTTCAATTTCAATTT+TGG | - | chr4_2:1331811-1331830 | Msa0582990:three_prime_UTR | 20.0% |
| !! | TGTCAATTAAACAATAAAGA+TGG | + | chr4_2:1331879-1331898 | None:intergenic | 20.0% |
| !! | TCTTTATTGTTTAATTGACA+TGG | - | chr4_2:1331879-1331898 | Msa0582990:three_prime_UTR | 20.0% |
| !! | CTTTATTGTTTAATTGACAT+GGG | - | chr4_2:1331880-1331899 | Msa0582990:three_prime_UTR | 20.0% |
| !! | CATTGAATCAAAGTAATTTA+GGG | + | chr4_2:1331961-1331980 | None:intergenic | 20.0% |
| !! | ACATTGAATCAAAGTAATTT+AGG | + | chr4_2:1331962-1331981 | None:intergenic | 20.0% |
| !! | ATTAGATTTCTTAGAAGTTA+GGG | - | chr4_2:1332145-1332164 | Msa0582990:CDS | 20.0% |
| !!! | CTTTCTTTTTTTGATCATTT+TGG | - | chr4_2:1332267-1332286 | Msa0582990:CDS | 20.0% |
| !!! | ATTTTGGTTGTTATTATTGA+AGG | - | chr4_2:1332283-1332302 | Msa0582990:CDS | 20.0% |
| !!! | TAATTGTGTTTTTCGGAAAA+AGG | + | chr4_2:1331699-1331718 | None:intergenic | 25.0% |
| !! | CGAATTGTAATTGTGTTTTT+CGG | + | chr4_2:1331706-1331725 | None:intergenic | 25.0% |
| ! | AACAAGAACAAGAATAAGAT+TGG | - | chr4_2:1331737-1331756 | Msa0582990:three_prime_UTR | 25.0% |
| ! | ACAAGAACAAGAATAAGATT+GGG | - | chr4_2:1331738-1331757 | Msa0582990:three_prime_UTR | 25.0% |
| !! | GATTTTACCTTATCTATCTA+TGG | + | chr4_2:1331794-1331813 | None:intergenic | 25.0% |
| !!! | ATGTACGAGTTTTGTATAAT+TGG | - | chr4_2:1331995-1332014 | Msa0582990:three_prime_UTR | 25.0% |
| ! | ATAATTGGTTAATCCCAAAT+TGG | - | chr4_2:1332010-1332029 | Msa0582990:exon | 25.0% |
| ! | AAACTCATACAATTCTCAAT+AGG | + | chr4_2:1332116-1332135 | None:intergenic | 25.0% |
| !! | CTAACTTCTAAGAAATCTAA+TGG | + | chr4_2:1332146-1332165 | None:intergenic | 25.0% |
| ! | CATTAGATTTCTTAGAAGTT+AGG | - | chr4_2:1332144-1332163 | Msa0582990:CDS | 25.0% |
| ! | TGTTGTTCAACAATTGTATT+CGG | + | chr4_2:1333242-1333261 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTGTTTTTGTTGT+CGG | - | chr4_2:1333496-1333515 | Msa0582990:intron | 25.0% |
| !!! | CTTACTAGATTTTTTTTGTG+CGG | + | chr4_2:1333541-1333560 | None:intergenic | 25.0% |
| !! | TATTTCATCTAGTCTTTGTT+TGG | - | chr4_2:1334036-1334055 | Msa0582990:five_prime_UTR | 25.0% |
| ! | CTTAGAAGTTAGGGTATTAT+TGG | - | chr4_2:1332154-1332173 | Msa0582990:intron | 30.0% |
| !! | TTATTGGCTTCATAATGTGT+AGG | - | chr4_2:1332170-1332189 | Msa0582990:intron | 30.0% |
| ! | TTTTATGTGTTTACTGCCAA+AGG | - | chr4_2:1332353-1332372 | Msa0582990:CDS | 30.0% |
| !!! | AATGAACAGTTTTTAGAGCT+GGG | - | chr4_2:1332457-1332476 | Msa0582990:CDS | 30.0% |
| CTAGAATTCATTCATGTGTT+AGG | - | chr4_2:1332644-1332663 | Msa0582990:CDS | 30.0% | |
| !! | TATCATTTTTAGGCCTATCA+GGG | + | chr4_2:1332753-1332772 | None:intergenic | 30.0% |
| !! | TTATCATTTTTAGGCCTATC+AGG | + | chr4_2:1332754-1332773 | None:intergenic | 30.0% |
| !! | ATGGTCGCTTTATCATTTTT+AGG | + | chr4_2:1332763-1332782 | None:intergenic | 30.0% |
| GTTTACTAACTTGAGAAGTA+AGG | + | chr4_2:1332816-1332835 | None:intergenic | 30.0% | |
| ATTGTATTCGGAGCTAAAAA+GGG | + | chr4_2:1333230-1333249 | None:intergenic | 30.0% | |
| AATTGTATTCGGAGCTAAAA+AGG | + | chr4_2:1333231-1333250 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGACGAGAATAGAA+GGG | + | chr4_2:1333779-1333798 | None:intergenic | 30.0% |
| !!! | AAACTTTTCTTTGAGTTGTG+AGG | - | chr4_2:1333866-1333885 | Msa0582990:intron | 30.0% |
| !!! | AACTTTTCTTTGAGTTGTGA+GGG | - | chr4_2:1333867-1333886 | Msa0582990:intron | 30.0% |
| TTCAATTTGTCACAAGGAAT+AGG | + | chr4_2:1333924-1333943 | None:intergenic | 30.0% | |
| TGCAATTTCAATTTGTCACA+AGG | + | chr4_2:1333930-1333949 | None:intergenic | 30.0% | |
| TGACAAATTGAAATTGCAGA+TGG | - | chr4_2:1333932-1333951 | Msa0582990:five_prime_UTR | 30.0% | |
| TTAGGAGAGTTTGTGATTAA+GGG | + | chr4_2:1334004-1334023 | None:intergenic | 30.0% | |
| TTTAGGAGAGTTTGTGATTA+AGG | + | chr4_2:1334005-1334024 | None:intergenic | 30.0% | |
| TAATCACAAACTCTCCTAAA+AGG | - | chr4_2:1334005-1334024 | Msa0582990:five_prime_UTR | 30.0% | |
| AAGACTAGATGAAATAAGCA+TGG | + | chr4_2:1334032-1334051 | None:intergenic | 30.0% | |
| GGAAAAAGGTGAAAAGTGAA+AGG | + | chr4_2:1331685-1331704 | None:intergenic | 35.0% | |
| GCATCAACCATAGATAGATA+AGG | - | chr4_2:1331784-1331803 | Msa0582990:three_prime_UTR | 35.0% | |
| !! | AGGAACAAATTTTCAAGCAG+TGG | - | chr4_2:1332190-1332209 | Msa0582990:intron | 35.0% |
| !! | AATTTTCAAGCAGTGGCTTT+TGG | - | chr4_2:1332197-1332216 | Msa0582990:intron | 35.0% |
| !!! | CAATGAACAGTTTTTAGAGC+TGG | - | chr4_2:1332456-1332475 | Msa0582990:CDS | 35.0% |
| ! | TTAGAGCTGGGTAACATTTT+AGG | - | chr4_2:1332469-1332488 | Msa0582990:CDS | 35.0% |
| ! | TTTTCAACTACATGTTGCGA+AGG | - | chr4_2:1332572-1332591 | Msa0582990:CDS | 35.0% |
| AATGATAAAGCGACCATTCT+AGG | - | chr4_2:1332766-1332785 | Msa0582990:intron | 35.0% | |
| TTGAACTGTATCTCCTAGAA+TGG | + | chr4_2:1332782-1332801 | None:intergenic | 35.0% | |
| AGATACAGTTCAATTGCTGA+AGG | - | chr4_2:1332789-1332808 | Msa0582990:intron | 35.0% | |
| ! | CGTGAGGTAATATTTTCTCT+CGG | - | chr4_2:1332871-1332890 | Msa0582990:CDS | 35.0% |
| ! | TCTGGGACATAAATTTACAG+AGG | - | chr4_2:1332916-1332935 | Msa0582990:CDS | 35.0% |
| AACTAAGGACTATGTATCCA+TGG | - | chr4_2:1333051-1333070 | Msa0582990:intron | 35.0% | |
| AATGGATCATTCCGTTATGA+TGG | - | chr4_2:1333079-1333098 | Msa0582990:intron | 35.0% | |
| ! | GATGTTGATTAGCATAGTAG+GGG | + | chr4_2:1333172-1333191 | None:intergenic | 35.0% |
| ! | GGATGTTGATTAGCATAGTA+GGG | + | chr4_2:1333173-1333192 | None:intergenic | 35.0% |
| ! | AGGATGTTGATTAGCATAGT+AGG | + | chr4_2:1333174-1333193 | None:intergenic | 35.0% |
| CATATGTTGAACAAGGGTTA+GGG | + | chr4_2:1333205-1333224 | None:intergenic | 35.0% | |
| ACATATGTTGAACAAGGGTT+AGG | + | chr4_2:1333206-1333225 | None:intergenic | 35.0% | |
| AGGGAACATATGTTGAACAA+GGG | + | chr4_2:1333211-1333230 | None:intergenic | 35.0% | |
| AAGGGAACATATGTTGAACA+AGG | + | chr4_2:1333212-1333231 | None:intergenic | 35.0% | |
| ACTCCAAAAACAAATCATCC+AGG | - | chr4_2:1333327-1333346 | Msa0582990:intron | 35.0% | |
| CTCCAAAAACAAATCATCCA+GGG | - | chr4_2:1333328-1333347 | Msa0582990:intron | 35.0% | |
| !!! | GTTAGTGCTGCTTTTTTCTT+GGG | - | chr4_2:1333434-1333453 | Msa0582990:intron | 35.0% |
| !! | TTTTTGTTGTCGGATTTTGC+AGG | - | chr4_2:1333506-1333525 | Msa0582990:intron | 35.0% |
| AAAAATCTAGTAAGTCGTCG+AGG | - | chr4_2:1333547-1333566 | Msa0582990:intron | 35.0% | |
| !!! | CTTTTTTGGACGAGAATAGA+AGG | + | chr4_2:1333780-1333799 | None:intergenic | 35.0% |
| TTAAGAAGAGAGAACAGAAG+CGG | + | chr4_2:1333807-1333826 | None:intergenic | 35.0% | |
| TCTGTTCTCTCTTCTTAACT+AGG | - | chr4_2:1333809-1333828 | Msa0582990:intron | 35.0% | |
| ! | GAAATAAGCATGGTCCTTTT+AGG | + | chr4_2:1334022-1334041 | None:intergenic | 35.0% |
| !! | TAGTGGAAGAGTTGTCGTTT+TGG | + | chr4_2:1331661-1331680 | None:intergenic | 40.0% |
| GGTGAAAAGTGAAAGGATAG+TGG | + | chr4_2:1331678-1331697 | None:intergenic | 40.0% | |
| GAACTACACAGCACCAATTT+GGG | + | chr4_2:1332026-1332045 | None:intergenic | 40.0% | |
| TGAACTACACAGCACCAATT+TGG | + | chr4_2:1332027-1332046 | None:intergenic | 40.0% | |
| TTGGTTCAACTTCAGACCTT+TGG | + | chr4_2:1332372-1332391 | None:intergenic | 40.0% | |
| ! | AAGGTCTGAAGTTGAACCAA+TGG | - | chr4_2:1332372-1332391 | Msa0582990:CDS | 40.0% |
| CTAGCAGGTGTAATTTCCAT+TGG | + | chr4_2:1332391-1332410 | None:intergenic | 40.0% | |
| ACCTGCTAGAAAGACACAAA+AGG | - | chr4_2:1332402-1332421 | Msa0582990:CDS | 40.0% | |
| TGACCGAGAAAAGTTAAGGA+GGG | - | chr4_2:1332426-1332445 | Msa0582990:CDS | 40.0% | |
| ! | GATCCCTCCTTAACTTTTCT+CGG | + | chr4_2:1332432-1332451 | None:intergenic | 40.0% |
| AGAGCACAGAGTAATTCAAG+AGG | + | chr4_2:1332709-1332728 | None:intergenic | 40.0% | |
| TTGAATTACTCTGTGCTCTG+TGG | - | chr4_2:1332710-1332729 | Msa0582990:CDS | 40.0% | |
| GCTAAATGAAGAATCTCGTG+AGG | - | chr4_2:1332855-1332874 | Msa0582990:CDS | 40.0% | |
| ATGAATCACCTTGATGCTTC+TGG | - | chr4_2:1332898-1332917 | Msa0582990:CDS | 40.0% | |
| TGAATCACCTTGATGCTTCT+GGG | - | chr4_2:1332899-1332918 | Msa0582990:CDS | 40.0% | |
| !! | TTTATGTCCCAGAAGCATCA+AGG | + | chr4_2:1332909-1332928 | None:intergenic | 40.0% |
| GTTCAATTTCCAGTTGTCTC+AGG | - | chr4_2:1332953-1332972 | Msa0582990:intron | 40.0% | |
| ! | CATTTTTCTCCTGAGACAAC+TGG | + | chr4_2:1332965-1332984 | None:intergenic | 40.0% |
| ! | ATAACGGAATGATCCATTGC+AGG | + | chr4_2:1333077-1333096 | None:intergenic | 40.0% |
| TGATTAGCATAGTAGGGGTA+CGG | + | chr4_2:1333167-1333186 | None:intergenic | 40.0% | |
| !!! | GTCTTGTTTTCCTGATACGT+GGG | + | chr4_2:1333309-1333328 | None:intergenic | 40.0% |
| !!! | AGTCTTGTTTTCCTGATACG+TGG | + | chr4_2:1333310-1333329 | None:intergenic | 40.0% |
| !!! | CTCCCTGGATGATTTGTTTT+TGG | + | chr4_2:1333333-1333352 | None:intergenic | 40.0% |
| !!! | GGTTAGTGCTGCTTTTTTCT+TGG | - | chr4_2:1333433-1333452 | Msa0582990:intron | 40.0% |
| ACCTATAGATGCAGTAGAAG+AGG | - | chr4_2:1333467-1333486 | Msa0582990:intron | 40.0% | |
| ACCTCTTCTACTGCATCTAT+AGG | + | chr4_2:1333471-1333490 | None:intergenic | 40.0% | |
| AAGGAAACCAGTTTCACAGA+AGG | - | chr4_2:1333570-1333589 | Msa0582990:intron | 40.0% | |
| TTCACAGAAGGTAGTTCGTT+AGG | - | chr4_2:1333582-1333601 | Msa0582990:intron | 40.0% | |
| TTCTTCATCTCACAGTGTTC+AGG | - | chr4_2:1333611-1333630 | Msa0582990:intron | 40.0% | |
| TAGCTCATCAAGTAGTGTAG+TGG | - | chr4_2:1333635-1333654 | Msa0582990:intron | 40.0% | |
| AGCTCATCAAGTAGTGTAGT+GGG | - | chr4_2:1333636-1333655 | Msa0582990:intron | 40.0% | |
| GAAAGGCTAGTGAATGAGAA+TGG | - | chr4_2:1333664-1333683 | Msa0582990:intron | 40.0% | |
| TTCTGCTGCAACTATTGTAG+AGG | - | chr4_2:1333746-1333765 | Msa0582990:intron | 40.0% | |
| !!! | ACAGAAGCGGCTTTCTTTTT+TGG | + | chr4_2:1333794-1333813 | None:intergenic | 40.0% |
| !! | TTCTTTGAGTTGTGAGGGAA+AGG | - | chr4_2:1333872-1333891 | Msa0582990:intron | 40.0% |
| CAAACTACATTTAGCCACAC+TGG | + | chr4_2:1333976-1333995 | None:intergenic | 40.0% | |
| GAAAATGTTGAACGTACGTC+TGG | - | chr4_2:1334068-1334087 | Msa0582990:five_prime_UTR | 40.0% | |
| ! | GTGGCTTTTGGACATGTCAA+AGG | - | chr4_2:1332209-1332228 | Msa0582990:intron | 45.0% |
| !! | GCCTTTTGTGTCTTTCTAGC+AGG | + | chr4_2:1332406-1332425 | None:intergenic | 45.0% |
| AGGCTGACCGAGAAAAGTTA+AGG | - | chr4_2:1332422-1332441 | Msa0582990:CDS | 45.0% | |
| CTGACCGAGAAAAGTTAAGG+AGG | - | chr4_2:1332425-1332444 | Msa0582990:CDS | 45.0% | |
| CAAAATGTGAGCAGAGTCAC+TGG | - | chr4_2:1332527-1332546 | Msa0582990:CDS | 45.0% | |
| ! | TCTGAAATGCAGACCCTGAT+AGG | - | chr4_2:1332737-1332756 | Msa0582990:intron | 45.0% |
| ACCAGTATCAGCTGCAACTA+AGG | - | chr4_2:1333036-1333055 | Msa0582990:intron | 45.0% | |
| TCCTTAGTTGCAGCTGATAC+TGG | + | chr4_2:1333040-1333059 | None:intergenic | 45.0% | |
| TATGTATCCATGGCCTGCAA+TGG | - | chr4_2:1333061-1333080 | Msa0582990:intron | 45.0% | |
| ! | TGTTGGTGGAGCCATCATAA+CGG | + | chr4_2:1333093-1333112 | None:intergenic | 45.0% |
| ACTGGATACGGATATGTTGG+TGG | + | chr4_2:1333107-1333126 | None:intergenic | 45.0% | |
| GGAACTGGATACGGATATGT+TGG | + | chr4_2:1333110-1333129 | None:intergenic | 45.0% | |
| GAGCAAGGCTCAAAGAAATG+AGG | - | chr4_2:1333352-1333371 | Msa0582990:intron | 45.0% | |
| AGTCTTCAACTCAAGGTCTG+TGG | + | chr4_2:1333393-1333412 | None:intergenic | 45.0% | |
| !! | ACCTTGAGTTGAAGACTCCT+GGG | - | chr4_2:1333396-1333415 | Msa0582990:intron | 45.0% |
| ATCTAGTAAGTCGTCGAGGA+AGG | - | chr4_2:1333551-1333570 | Msa0582990:intron | 45.0% | |
| CGAACTACCTTCTGTGAAAC+TGG | + | chr4_2:1333580-1333599 | None:intergenic | 45.0% | |
| GCTCATCAAGTAGTGTAGTG+GGG | - | chr4_2:1333637-1333656 | Msa0582990:intron | 45.0% | |
| ! | CTGCTGTGAGGGTTTTCATT+GGG | - | chr4_2:1333722-1333741 | Msa0582990:intron | 45.0% |
| !! | TCTTCAAGTTGAGACCAGTG+TGG | - | chr4_2:1333959-1333978 | Msa0582990:five_prime_UTR | 45.0% |
| GGATCACAGCAAGCAAACGA+CGG | + | chr4_2:1331640-1331659 | None:intergenic | 50.0% | |
| GAATGATCCATTGCAGGCCA+TGG | + | chr4_2:1333071-1333090 | None:intergenic | 50.0% | |
| TCCGTATCCAGTTCCAATGC+CGG | - | chr4_2:1333115-1333134 | Msa0582990:intron | 50.0% | |
| ! | ACCGGCATTGGAACTGGATA+CGG | + | chr4_2:1333119-1333138 | None:intergenic | 50.0% |
| GGAATTGAACCAGCAGGTAC+CGG | + | chr4_2:1333137-1333156 | None:intergenic | 50.0% | |
| TGCATGGGAATTGAACCAGC+AGG | + | chr4_2:1333143-1333162 | None:intergenic | 50.0% | |
| ! | GTTTTCCTGATACGTGGGAC+CGG | + | chr4_2:1333304-1333323 | None:intergenic | 50.0% |
| CAAATCATCCAGGGAGAGCA+AGG | - | chr4_2:1333337-1333356 | Msa0582990:intron | 50.0% | |
| !! | GACCTTGAGTTGAAGACTCC+TGG | - | chr4_2:1333395-1333414 | Msa0582990:intron | 50.0% |
| ACCCAGGAGTCTTCAACTCA+AGG | + | chr4_2:1333400-1333419 | None:intergenic | 50.0% | |
| AGCAGCACTAACCTGATCTG+CGG | + | chr4_2:1333426-1333445 | None:intergenic | 50.0% | |
| ! | TAGTGTAGTGGGGAGCAGAA+AGG | - | chr4_2:1333647-1333666 | Msa0582990:intron | 50.0% |
| !!! | TGCCTTTTGAAGCTGCTGTG+AGG | - | chr4_2:1333710-1333729 | Msa0582990:intron | 50.0% |
| !!! | GCCTTTTGAAGCTGCTGTGA+GGG | - | chr4_2:1333711-1333730 | Msa0582990:intron | 50.0% |
| ACCCTCACAGCAGCTTCAAA+AGG | + | chr4_2:1333715-1333734 | None:intergenic | 50.0% | |
| ! | GCTGCTGTGAGGGTTTTCAT+TGG | - | chr4_2:1333721-1333740 | Msa0582990:intron | 50.0% |
| GTTGAACGTACGTCTGGACT+CGG | - | chr4_2:1334074-1334093 | Msa0582990:five_prime_UTR | 50.0% | |
| ! | TAGTAGGGGTACGGCTGCAT+GGG | + | chr4_2:1333158-1333177 | None:intergenic | 55.0% |
| ! | ATAGTAGGGGTACGGCTGCA+TGG | + | chr4_2:1333159-1333178 | None:intergenic | 55.0% |
| CAAGGGTTAGGGATGACTGC+AGG | + | chr4_2:1333194-1333213 | None:intergenic | 55.0% | |
| AGGCGGGGATACGTATTGAG+TGG | + | chr4_2:1333267-1333286 | None:intergenic | 55.0% | |
| TCTTTGAGCCTTGCTCTCCC+TGG | + | chr4_2:1333348-1333367 | None:intergenic | 55.0% | |
| !! | GCAGGTACCGGCATTGGAAC+TGG | + | chr4_2:1333125-1333144 | None:intergenic | 60.0% |
| GTTCCAATGCCGGTACCTGC+TGG | - | chr4_2:1333125-1333144 | Msa0582990:intron | 60.0% | |
| !! | GAACCAGCAGGTACCGGCAT+TGG | + | chr4_2:1333131-1333150 | None:intergenic | 60.0% |
| GTATCCCCGCCTCTTCATCC+AGG | - | chr4_2:1333275-1333294 | Msa0582990:CDS | 60.0% | |
| GCTACCTGGATGAAGAGGCG+GGG | + | chr4_2:1333282-1333301 | None:intergenic | 60.0% | |
| GGCTACCTGGATGAAGAGGC+GGG | + | chr4_2:1333283-1333302 | None:intergenic | 60.0% | |
| CGGCTACCTGGATGAAGAGG+CGG | + | chr4_2:1333284-1333303 | None:intergenic | 60.0% | |
| CGCCTCTTCATCCAGGTAGC+CGG | - | chr4_2:1333282-1333301 | Msa0582990:CDS | 60.0% | |
| GACCGGCTACCTGGATGAAG+AGG | + | chr4_2:1333287-1333306 | None:intergenic | 60.0% | |
| TCCTGGGTCTTCCGCAGATC+AGG | - | chr4_2:1333412-1333431 | Msa0582990:intron | 60.0% | |
| ACCTGATCTGCGGAAGACCC+AGG | + | chr4_2:1333416-1333435 | None:intergenic | 60.0% | |
| TGTGAGGGAAAGGCTGCGTG+AGG | - | chr4_2:1333882-1333901 | Msa0582990:intron | 60.0% | |
| GATACGTGGGACCGGCTACC+TGG | + | chr4_2:1333296-1333315 | None:intergenic | 65.0% | |
| GGTAGCCGGTCCCACGTATC+AGG | - | chr4_2:1333296-1333315 | Msa0582990:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 1331593 | 1334102 | 1331593 | ID=Msa0582990;Name=Msa0582990 |
| chr4_2 | mRNA | 1331593 | 1334102 | 1331593 | ID=Msa0582990-mRNA-1;Parent=Msa0582990;Name=Msa0582990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=229|1|1|1|0.75|0.6|5|422|282 |
| chr4_2 | exon | 1331593 | 1332167 | 1331593 | ID=Msa0582990-mRNA-1:exon:346;Parent=Msa0582990-mRNA-1 |
| chr4_2 | exon | 1332262 | 1332729 | 1332262 | ID=Msa0582990-mRNA-1:exon:345;Parent=Msa0582990-mRNA-1 |
| chr4_2 | exon | 1332819 | 1332946 | 1332819 | ID=Msa0582990-mRNA-1:exon:344;Parent=Msa0582990-mRNA-1 |
| chr4_2 | exon | 1333205 | 1333320 | 1333205 | ID=Msa0582990-mRNA-1:exon:343;Parent=Msa0582990-mRNA-1 |
| chr4_2 | exon | 1333890 | 1334102 | 1333890 | ID=Msa0582990-mRNA-1:exon:342;Parent=Msa0582990-mRNA-1 |
| chr4_2 | five_prime_UTR | 1333890 | 1334102 | 1333890 | ID=Msa0582990-mRNA-1:five_prime_utr;Parent=Msa0582990-mRNA-1 |
| chr4_2 | five_prime_UTR | 1333305 | 1333320 | 1333305 | ID=Msa0582990-mRNA-1:five_prime_utr;Parent=Msa0582990-mRNA-1 |
| chr4_2 | CDS | 1333205 | 1333304 | 1333205 | ID=Msa0582990-mRNA-1:cds;Parent=Msa0582990-mRNA-1 |
| chr4_2 | CDS | 1332819 | 1332946 | 1332819 | ID=Msa0582990-mRNA-1:cds;Parent=Msa0582990-mRNA-1 |
| chr4_2 | CDS | 1332262 | 1332729 | 1332262 | ID=Msa0582990-mRNA-1:cds;Parent=Msa0582990-mRNA-1 |
| chr4_2 | CDS | 1332015 | 1332167 | 1332015 | ID=Msa0582990-mRNA-1:cds;Parent=Msa0582990-mRNA-1 |
| chr4_2 | three_prime_UTR | 1331593 | 1332014 | 1331593 | ID=Msa0582990-mRNA-1:three_prime_utr;Parent=Msa0582990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
