AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583470 MtrunA17_Chr7g0246631 98.072 778 15 0 1 778 1 778 0.0 1582
Msa0583470 MtrunA17_Chr8g0350321 80.580 793 127 11 1 778 30 810 0.0 1276
Msa0583470 MtrunA17_Chr1g0203671 64.219 749 230 9 53 775 54 790 0.0 952
Msa0583470 MtrunA17_Chr4g0024351 54.018 759 312 13 30 778 2 733 0.0 781
Msa0583470 MtrunA17_Chr2g0322731 54.787 752 305 14 37 777 41 768 0.0 775
Msa0583470 MtrunA17_Chr6g0472471 51.790 782 321 18 27 774 6 765 0.0 775
Msa0583470 MtrunA17_Chr6g0481041 49.022 716 320 12 91 778 29 727 0.0 664
Msa0583470 MtrunA17_Chr5g0410711 43.409 751 370 18 55 774 52 778 0.0 605
Msa0583470 MtrunA17_Chr2g0331581 43.333 690 344 10 95 777 143 792 0.0 601
Msa0583470 MtrunA17_Chr5g0394111 40.986 710 330 14 74 774 17 646 7.71e-169 501
Msa0583470 MtrunA17_Chr7g0224451 41.935 496 216 10 85 572 10 441 1.42e-122 375
Msa0583470 MtrunA17_Chr2g0292731 37.037 486 293 8 295 774 70 548 8.62e-98 314
Msa0583470 MtrunA17_Chr2g0292741 36.157 484 295 8 295 774 62 535 9.87e-94 303
Msa0583470 MtrunA17_Chr7g0224481 41.085 387 165 7 85 465 10 339 7.51e-87 278
Msa0583470 MtrunA17_Chr7g0224491 44.860 321 139 10 468 776 1 295 2.18e-76 249
Msa0583470 MtrunA17_Chr2g0292761 30.732 615 341 22 170 774 1 540 8.09e-73 247
Msa0583470 MtrunA17_Chr5g0419821 54.098 122 55 1 91 211 33 154 3.03e-39 143
Msa0583470 MtrunA17_Chr2g0319671 30.605 281 148 5 290 538 19 284 4.80e-36 138
Msa0583470 MtrunA17_Chr2g0319701 37.179 234 136 6 549 778 1 227 3.45e-35 134
Msa0583470 MtrunA17_Chr2g0319681 34.335 233 146 4 549 778 1 229 4.21e-32 125
Msa0583470 MtrunA17_Chr2g0319691 40.945 127 68 2 403 528 1 121 1.88e-26 105
Msa0583470 MtrunA17_Chr1g0205981 33.816 207 101 6 146 339 1 184 2.62e-25 104
Msa0583470 MtrunA17_Chr7g0224461 47.967 123 47 4 664 776 1 116 1.59e-23 96.3
Msa0583470 MtrunA17_Chr2g0304191 36.029 136 77 2 297 427 1 131 5.38e-22 92.8
Msa0583470 MtrunA17_Chr7g0224431 34.146 164 64 2 312 475 1 120 2.40e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583470 AT4G00730.1 69.728 773 209 8 11 778 50 802 0.0 1063
Msa0583470 AT3G61150.1 64.963 802 229 13 1 778 34 807 0.0 1020
Msa0583470 AT4G04890.2 54.424 746 292 13 52 777 21 738 0.0 793
Msa0583470 AT4G04890.1 54.424 746 292 13 52 777 21 738 0.0 793
Msa0583470 AT4G21750.2 55.418 729 267 12 84 777 55 760 0.0 773
Msa0583470 AT4G21750.1 55.418 729 267 12 84 777 55 760 0.0 773
Msa0583470 AT4G21750.3 55.418 729 267 12 84 777 55 760 0.0 773
Msa0583470 AT4G21750.4 55.418 729 267 12 84 777 55 760 0.0 773
Msa0583470 AT1G05230.8 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.4 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.9 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.10 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.7 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.11 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.2 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.6 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.5 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.1 53.279 732 305 14 50 778 23 720 0.0 764
Msa0583470 AT1G05230.3 53.279 732 303 15 50 778 23 718 0.0 760
Msa0583470 AT5G52170.3 53.121 721 267 12 61 775 24 679 0.0 743
Msa0583470 AT5G52170.1 53.121 721 267 12 61 775 24 679 0.0 743
Msa0583470 AT5G52170.2 52.755 726 267 13 61 775 24 684 0.0 737
Msa0583470 AT4G00730.2 66.034 527 156 7 11 532 50 558 0.0 687
Msa0583470 AT1G73360.1 47.926 699 332 10 91 774 32 713 0.0 629
Msa0583470 AT1G17920.2 46.286 700 323 14 94 778 24 685 0.0 614
Msa0583470 AT1G17920.1 46.286 700 323 14 94 778 24 685 0.0 614
Msa0583470 AT1G05230.12 51.560 609 264 13 50 655 23 603 0.0 611
Msa0583470 AT2G32370.1 44.109 696 342 11 91 778 68 724 0.0 577
Msa0583470 AT1G79840.1 41.917 699 346 12 88 777 98 745 0.0 561
Msa0583470 AT1G79840.3 41.917 699 346 12 88 777 40 687 0.0 560
Msa0583470 AT1G79840.6 41.917 699 346 12 88 777 40 687 0.0 560
Msa0583470 AT1G79840.2 41.917 699 346 12 88 777 127 774 0.0 559
Msa0583470 AT5G46880.3 41.806 720 373 17 84 774 104 806 2.71e-176 527
Msa0583470 AT5G46880.1 41.806 720 373 17 84 774 104 806 2.71e-176 527
Msa0583470 AT5G46880.2 41.806 720 373 17 84 774 104 806 2.71e-176 527
Msa0583470 AT4G25530.1 39.636 714 368 16 80 778 21 686 1.56e-162 487
Msa0583470 AT1G79840.4 41.549 568 283 9 88 651 98 620 1.14e-154 465
Msa0583470 AT4G17710.1 40.115 698 328 18 89 774 84 703 3.46e-150 456
Msa0583470 AT3G03260.1 36.886 713 382 18 92 776 24 696 2.40e-143 438
Msa0583470 AT5G17320.1 35.223 741 415 21 73 777 7 718 8.84e-129 400
Msa0583470 AT1G34650.1 34.318 711 411 19 98 777 23 708 3.31e-117 370
Msa0583470 AT1G79840.5 40.583 446 218 7 88 530 98 499 5.89e-109 342
Msa0583470 AT3G03260.2 35.677 569 315 15 73 623 3 538 1.19e-105 335
Msa0583470 AT5G07260.1 27.321 560 325 16 157 712 10 491 2.80e-54 196
Msa0583470 AT5G07260.2 27.419 558 322 16 157 712 10 486 7.91e-54 195
Msa0583470 AT4G26920.1 28.829 222 145 9 528 746 231 442 4.46e-14 75.9
Msa0583470 AT1G30490.1 40.000 100 53 3 79 174 6 102 1.03e-12 72.4

Find 195 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTGTGTTCTTCTATTT+TGG 0.092193 4_2:-2025581 None:intergenic
GGCTCTTGTTGAAACTTTAA+TGG 0.179447 4_2:+2026487 Msa0583470:CDS
CAGTTGTAGAGCACCATTTC+TGG 0.218972 4_2:-2027055 None:intergenic
ATGCCTTTAGGTCAAGATTT+TGG 0.233318 4_2:+2026155 Msa0583470:CDS
CTAAGCTTAGGCATGGGTTT+TGG 0.241414 4_2:+2029527 Msa0583470:CDS
TCAAACCATTATTTGTTTGA+TGG 0.255996 4_2:-2025218 None:intergenic
GAGTTTGGTAACGACGTAAT+TGG 0.264874 4_2:-2026083 None:intergenic
ATTTCTACTTTGATGAGTTT+TGG 0.265456 4_2:+2024929 Msa0583470:five_prime_UTR
GTGATATCTAGTGGAATAAA+TGG 0.274598 4_2:+2027030 Msa0583470:CDS
CACAAACTAATGAGCCTCTT+TGG 0.274681 4_2:+2026321 Msa0583470:CDS
GATAACATGGATGGTATTTC+TGG 0.280364 4_2:+2025288 Msa0583470:CDS
AATTTCCATCAAACAAATAA+TGG 0.293878 4_2:+2025213 Msa0583470:CDS
AGCTTCTCTGATGGTATCTA+TGG 0.310496 4_2:-2027329 None:intergenic
ACACTTGCCGGCAAGTTTCT+AGG 0.314978 4_2:+2026056 Msa0583470:CDS
ACCACCATTATCACGACTTC+TGG 0.320606 4_2:+2031882 Msa0583470:three_prime_UTR
CCAATTTCTAAACTCGAGTT+TGG 0.322467 4_2:-2026098 None:intergenic
CCAAACTCGAGTTTAGAAAT+TGG 0.322627 4_2:+2026098 Msa0583470:CDS
AAACAAGACAAGTCAAGTTT+TGG 0.322654 4_2:+2025556 Msa0583470:CDS
CCCTTTAGTTTGGAAATTCT+AGG 0.328490 4_2:+2024788 None:intergenic
GGAATGTGGGCGAGGACGTT+AGG 0.329094 4_2:+2029888 Msa0583470:CDS
ACTTAGCAAAAGGCTTTGTT+TGG 0.341498 4_2:+2025533 Msa0583470:CDS
TATGTTTCTTGAACTTGCTT+TGG 0.349553 4_2:+2026271 Msa0583470:CDS
AACTGTAGGAGGCTTCCTTC+TGG 0.355417 4_2:+2027376 Msa0583470:CDS
TTGCCTTCAACAATGCCTTT+AGG 0.357400 4_2:+2026143 Msa0583470:CDS
GACCGAGTTTGTACACTTGC+CGG 0.358469 4_2:+2026044 Msa0583470:CDS
TTCATTACTACATGCATTGC+GGG 0.358765 4_2:-2031476 None:intergenic
GGTGCACAAATGGAACAAAT+TGG 0.362490 4_2:+2029859 Msa0583470:CDS
CACAAAAGTTGTTTGTCATT+CGG 0.369193 4_2:-2029817 None:intergenic
TGAACTTGCTTTGGCTGCAA+TGG 0.370269 4_2:+2026280 Msa0583470:CDS
AAATCCATGTTCAACTCATC+TGG 0.372663 4_2:+2025020 Msa0583470:CDS
TCGTTTATCAACTCCTACTT+TGG 0.381588 4_2:+2024995 Msa0583470:CDS
ATTATTAGTACTCCTTGTAT+TGG 0.382879 4_2:+2026398 Msa0583470:CDS
GAAATTTCACTAATAATTGC+TGG 0.383011 4_2:-2025969 None:intergenic
GCCTCAGAAACAAAACCATT+TGG 0.385246 4_2:-2026428 None:intergenic
TGGTGATATGAAGAGATTAA+TGG 0.385985 4_2:+2025185 Msa0583470:CDS
GTCTATAGAGCTGGTGAACT+TGG 0.390142 4_2:-2029499 None:intergenic
TTCTGGAAAATGTTGATTGT+AGG 0.390922 4_2:+2031899 Msa0583470:three_prime_UTR
GTGCATCGACGGTGCACAAA+TGG 0.392526 4_2:+2029849 Msa0583470:CDS
AAGGTTCTTCATACATAAGT+AGG 0.394586 4_2:-2024880 None:intergenic
TTTGTTCCTCTTGTAATTGA+AGG 0.396389 4_2:-2026197 None:intergenic
TATGCCAAATGGTTACTCTA+AGG 0.401101 4_2:+2027414 Msa0583470:CDS
AGCAGCATGCAGAAGGGGTA+TGG 0.402136 4_2:+2027290 Msa0583470:CDS
GAAGGCTATTCACAAGTATC+TGG 0.404248 4_2:-2031634 None:intergenic
TTGATAATATCAGACTCAAT+TGG 0.408893 4_2:+2025839 Msa0583470:intron
GTTGCCATGGTCATGTCCTT+TGG 0.409163 4_2:-2030095 None:intergenic
AATTACAAGAGGAACAAATA+TGG 0.409950 4_2:+2026202 Msa0583470:CDS
GGAATAAATGGAACCAGAAA+TGG 0.422357 4_2:+2027042 Msa0583470:CDS
ATTACCTTAGAGTAACCATT+TGG 0.422663 4_2:-2027418 None:intergenic
AATTTAGTTTCGTAGTTATG+AGG 0.423611 4_2:+2031923 Msa0583470:three_prime_UTR
CTCCCGTCGCTATGTCCATC+TGG 0.423743 4_2:-2031551 None:intergenic
TGGACGGCCTAGAAACTTGC+CGG 0.428194 4_2:-2026063 None:intergenic
GAACATGAAAGCTGCAGATC+TGG 0.433822 4_2:+2025261 Msa0583470:CDS
AAGGAAGAGTGTGGATGATC+CGG 0.443006 4_2:+2029919 Msa0583470:CDS
TGTATTGGTTTAAAACCAAA+TGG 0.443568 4_2:+2026413 Msa0583470:CDS
CTCTTGCATTGGACCACCAT+TGG 0.446395 4_2:-2030059 None:intergenic
TGACCTAAAGGCATTGTTGA+AGG 0.455945 4_2:-2026146 None:intergenic
GGATGATCCGGGTGAGCCAC+CGG 0.456267 4_2:+2029931 Msa0583470:CDS
CAGAAATGGTGCTCTACAAC+TGG 0.456843 4_2:+2027056 Msa0583470:CDS
GGTTGTGAGATTGCACTAGA+AGG 0.460615 4_2:-2024972 None:intergenic
GAAACAAGCACAGACGCATC+GGG 0.460821 4_2:+2031422 Msa0583470:CDS
GACATTCACATTGGCGTTGG+AGG 0.461547 4_2:-2029571 None:intergenic
AGAAAACTCACCTCACGAAC+AGG 0.469601 4_2:-2027256 None:intergenic
GAATGTGGGCGAGGACGTTA+GGG 0.470341 4_2:+2029889 Msa0583470:CDS
ACAATCCCCGGTGGCTCACC+CGG 0.478000 4_2:-2029938 None:intergenic
TTATGTTGCGCTTCTTCCGT+CGG 0.480355 4_2:+2031514 Msa0583470:CDS
AAAGACTTGAACTTAGCAAA+AGG 0.481146 4_2:+2025523 Msa0583470:CDS
TCTGGAAAATGTTGATTGTA+GGG 0.481976 4_2:+2031900 Msa0583470:three_prime_UTR
TTAGTGCAGCAACCTCAGTT+TGG 0.483693 4_2:+2029963 Msa0583470:CDS
ACGAGAAGCTTAGAAGTGAA+TGG 0.489778 4_2:+2030026 Msa0583470:CDS
TATGTTGCGCTTCTTCCGTC+GGG 0.492269 4_2:+2031515 Msa0583470:CDS
CAAATTGGATGCAGGGAATG+TGG 0.492429 4_2:+2029874 Msa0583470:CDS
TGGATTAGAAGTGTTGAAAG+TGG 0.496742 4_2:+2026341 Msa0583470:CDS
GATGATCCGGGTGAGCCACC+GGG 0.500082 4_2:+2029932 Msa0583470:CDS
AAATGGAACAAATTGGATGC+AGG 0.503062 4_2:+2029866 Msa0583470:CDS
ATACCTGAGTGTTCTCTAGC+GGG 0.506667 4_2:-2029620 None:intergenic
CTAGACATTCACATTGGCGT+TGG 0.506942 4_2:-2029574 None:intergenic
CACGGTGGAATCAGTGGAAA+CGG 0.508426 4_2:+2031670 Msa0583470:CDS
ATGCCAAAATCTTGACCTAA+AGG 0.510136 4_2:-2026158 None:intergenic
CCTCCTACAGTTAAGAAAAG+TGG 0.511269 4_2:-2027365 None:intergenic
TGCAGAAGGGGTATGGGCAG+TGG 0.512805 4_2:+2027297 Msa0583470:CDS
ACTTCAAGTACTTTCTCCAT+TGG 0.513136 4_2:+2027231 Msa0583470:CDS
CGAGAAGCTTAGAAGTGAAT+GGG 0.514863 4_2:+2030027 Msa0583470:CDS
GGTGGAGCATGCAGAATATG+AGG 0.519622 4_2:+2029472 Msa0583470:CDS
CCTCCACAATTTGAACACAT+TGG 0.521367 4_2:-2025945 None:intergenic
AATCCAATGTGTTCAAATTG+TGG 0.530145 4_2:+2025942 Msa0583470:CDS
CGTGATTGTTAGAGCAAGAT+CGG 0.530561 4_2:+2031856 Msa0583470:three_prime_UTR
ACTAGATATCACTTCAGTTG+TGG 0.533585 4_2:-2027019 None:intergenic
GAGGCTTCCTTCTGGTTGTG+TGG 0.534040 4_2:+2027384 Msa0583470:CDS
TTCTAAGCTTCTCGTTGCGA+AGG 0.534552 4_2:-2030018 None:intergenic
ACCCTTGCTAAGCTTAGGCA+TGG 0.536023 4_2:+2029520 Msa0583470:CDS
CACCGTCGATGCACAAACTC+CGG 0.536497 4_2:-2029840 None:intergenic
CCGTGAGCTTTGCCGTCGGA+AGG 0.537799 4_2:-2031652 None:intergenic
CTCCTACAGTTAAGAAAAGT+GGG 0.539174 4_2:-2027364 None:intergenic
AGGAAGAGTGTGGATGATCC+GGG 0.542002 4_2:+2029920 Msa0583470:CDS
TCTGAGGCTTCTAGAGAAAG+TGG 0.543217 4_2:+2026443 Msa0583470:CDS
TCAAGTTCTTGAATTTGTTG+AGG 0.544285 4_2:-2025369 None:intergenic
AACATGGATTTAACCAAAGT+AGG 0.544723 4_2:-2025008 None:intergenic
AAATAGAAGAACACAAATGA+AGG 0.546022 4_2:+2025584 Msa0583470:CDS
AAAATACAAACAACTCAAAG+TGG 0.547654 4_2:-2031786 None:intergenic
GCAGCATGCAGAAGGGGTAT+GGG 0.548640 4_2:+2027291 Msa0583470:CDS
CAGATCTGGTAGTGATAACA+TGG 0.549386 4_2:+2025275 Msa0583470:CDS
TGCCGGAGTTTGTGCATCGA+CGG 0.549484 4_2:+2029838 Msa0583470:CDS
CCCTTGCTAAGCTTAGGCAT+GGG 0.551648 4_2:+2029521 Msa0583470:CDS
TCCATTGGTTCCTGTTCGTG+AGG 0.554096 4_2:+2027246 Msa0583470:CDS
GGTAATGACAAGGAAGAGTG+TGG 0.554273 4_2:+2029910 Msa0583470:CDS
TAGCAATAAATGCGGGAGGA+AGG 0.555245 4_2:+2029771 Msa0583470:intron
ATGTGAGCCATCTCTTGCAT+TGG 0.555705 4_2:-2030070 None:intergenic
TGCATACACTAGCTCGTAGG+AGG 0.558654 4_2:-2030126 None:intergenic
AGAAACAAGCACAGACGCAT+CGG 0.558699 4_2:+2031421 Msa0583470:CDS
ACATTCACATTGGCGTTGGA+GGG 0.559350 4_2:-2029570 None:intergenic
TCAACACTTCTAATCCAAAG+AGG 0.561610 4_2:-2026335 None:intergenic
GGGTCGCAGCGGAGAGCGAG+TGG 0.562161 4_2:+2031590 Msa0583470:CDS
AAATTGGATGCAGGGAATGT+GGG 0.562535 4_2:+2029875 Msa0583470:CDS
AACATATGATGCAGGTGACA+TGG 0.564953 4_2:+2029450 Msa0583470:intron
TTAGCAAGGGTCTATAGAGC+TGG 0.566123 4_2:-2029508 None:intergenic
TGTTGTTATCATAAACAGCT+TGG 0.566826 4_2:+2026466 Msa0583470:CDS
ACCCATGCCTAAGCTTAGCA+AGG 0.568460 4_2:-2029522 None:intergenic
AGGTTCTTCATACATAAGTA+GGG 0.570039 4_2:-2024879 None:intergenic
ACCTCACGAACAGGAACCAA+TGG 0.570995 4_2:-2027247 None:intergenic
ACCATCAGAGAAGCTTCAGC+TGG 0.571588 4_2:+2027337 Msa0583470:CDS
GTAACAAATACTAATAGTAA+TGG 0.574242 4_2:+2026224 Msa0583470:CDS
CTGTTGTATAACAGAATCGA+TGG 0.574417 4_2:+2026962 Msa0583470:intron
GAGCTTCTTGCAATCACACA+AGG 0.574571 4_2:-2026997 None:intergenic
GTCGCTTGTTGTGTACGCGC+CGG 0.575675 4_2:+2031445 Msa0583470:CDS
GGTTTCGCCGTGTTACCAGA+TGG 0.577544 4_2:+2031536 Msa0583470:CDS
GGATGCAGGGAATGTGGGCG+AGG 0.578994 4_2:+2029880 Msa0583470:CDS
AATGGAACAAATTGGATGCA+GGG 0.583192 4_2:+2029867 Msa0583470:CDS
AATGGATGAGTTAGTGAAGA+TGG 0.583650 4_2:+2026298 Msa0583470:CDS
TGCATTGCGGGAATATCTAC+CGG 0.586205 4_2:-2031464 None:intergenic
GGAGTGGTAATCACGATGAC+GGG 0.588681 4_2:+2031570 Msa0583470:CDS
GAGTGATGATGACATTAAGA+TGG 0.589154 4_2:-2029597 None:intergenic
CCTTCCGACGGCAAAGCTCA+CGG 0.589815 4_2:+2031652 Msa0583470:CDS
TACCAGATGGACATAGCGAC+GGG 0.591264 4_2:+2031549 Msa0583470:CDS
AGAAACATAGACCTCTCCAT+TGG 0.591789 4_2:-2026257 None:intergenic
GCTGCACTAAGCACAATCCC+CGG 0.592750 4_2:-2029950 None:intergenic
AAACAAATAATGGTTTGAGA+AGG 0.592932 4_2:+2025223 Msa0583470:CDS
ACAACTGAAGTGATATCTAG+TGG 0.593868 4_2:+2027021 Msa0583470:CDS
TGGTGGTCCAATGCAAGAGA+TGG 0.598545 4_2:+2030063 Msa0583470:CDS
TTGCAAGCAGCATGCAGAAG+GGG 0.600217 4_2:+2027285 Msa0583470:CDS
ACCAGCTGAAGCTTCTCTGA+TGG 0.600752 4_2:-2027338 None:intergenic
GTGGTTCAAGATATGCCAAA+TGG 0.603358 4_2:+2027403 Msa0583470:CDS
TTAATCATGAGGAATATACA+AGG 0.603991 4_2:+2026375 Msa0583470:CDS
GATGGACATAGCGACGGGAG+TGG 0.607388 4_2:+2031554 Msa0583470:CDS
GTTCCTCTTGTAATTGAAGG+TGG 0.608032 4_2:-2026194 None:intergenic
CTATGTGTAGCAATAAATGC+GGG 0.610261 4_2:+2029764 Msa0583470:intron
TCACCACCTTCAATTACAAG+AGG 0.610841 4_2:+2026191 Msa0583470:CDS
GGAGGGAGACACAGTTGCCA+TGG 0.612613 4_2:-2030108 None:intergenic
CCCATGCCTAAGCTTAGCAA+GGG 0.614032 4_2:-2029521 None:intergenic
GAATTTGTTGAGGAGTGTGT+CGG 0.614112 4_2:-2025359 None:intergenic
AAAGCTCACGGTGGAATCAG+TGG 0.620306 4_2:+2031664 Msa0583470:CDS
TCCACCGTGAGCTTTGCCGT+CGG 0.623528 4_2:-2031656 None:intergenic
GTCACGAGAATTCACTACTT+AGG 0.625972 4_2:+2025865 Msa0583470:CDS
TCCAGAAGTCGTGATAATGG+TGG 0.628520 4_2:-2031883 None:intergenic
TCTGGTAGTGATAACATGGA+TGG 0.630519 4_2:+2025279 Msa0583470:CDS
GAATGGGACATACTCTCCAA+TGG 0.631124 4_2:+2030043 Msa0583470:CDS
GGGAGTGGTAATCACGATGA+CGG 0.631663 4_2:+2031569 Msa0583470:CDS
TGCCGGCAAGTGTACAAACT+CGG 0.632620 4_2:-2026046 None:intergenic
TTTGCAAGCAGCATGCAGAA+GGG 0.633056 4_2:+2027284 Msa0583470:CDS
TAAACCAGATGAGTTGAACA+TGG 0.634149 4_2:-2025024 None:intergenic
TCTTGAACCACACAACCAGA+AGG 0.644378 4_2:-2027391 None:intergenic
CCTATGTGTAGCAATAAATG+CGG 0.644689 4_2:+2029763 Msa0583470:intron
GTTCATTACTACATGCATTG+CGG 0.652040 4_2:-2031477 None:intergenic
TTGGTAACGACGTAATTGGA+CGG 0.652910 4_2:-2026079 None:intergenic
ATATGCATACACTAGCTCGT+AGG 0.653193 4_2:-2030129 None:intergenic
TATAGACCCTTGCTAAGCTT+AGG 0.654709 4_2:+2029515 Msa0583470:CDS
ACATATGATGCAGGTGACAT+GGG 0.655326 4_2:+2029451 Msa0583470:intron
GCATACACTAGCTCGTAGGA+GGG 0.655354 4_2:-2030125 None:intergenic
GAGATGGCTCACATTGCCAA+AGG 0.656074 4_2:+2030079 Msa0583470:CDS
ATCACGATGACGGGTCGCAG+CGG 0.657275 4_2:+2031579 Msa0583470:CDS
GGTAACACGGCGAAACCCGA+CGG 0.657528 4_2:-2031530 None:intergenic
AGATGGCTAGACATTCACAT+TGG 0.658957 4_2:-2029580 None:intergenic
GCAATGCATGTAGTAATGAA+CGG 0.659870 4_2:+2031479 Msa0583470:CDS
TTACCAGATGGACATAGCGA+CGG 0.660884 4_2:+2031548 Msa0583470:CDS
TATACCTGAGTGTTCTCTAG+CGG 0.665145 4_2:-2029621 None:intergenic
TGTCAATAAGAGAAGCAATG+AGG 0.665809 4_2:+2025919 Msa0583470:CDS
CCAATGTGTTCAAATTGTGG+AGG 0.666399 4_2:+2025945 Msa0583470:CDS
GCTATGTCCATCTGGTAACA+CGG 0.669438 4_2:-2031543 None:intergenic
ACTTGTGAATAGCCTTCCGA+CGG 0.670143 4_2:+2031640 Msa0583470:CDS
ATGATCCGGGTGAGCCACCG+GGG 0.670578 4_2:+2029933 Msa0583470:CDS
TACCTGAGTGTTCTCTAGCG+GGG 0.673914 4_2:-2029619 None:intergenic
TGGGACATACTCTCCAATGG+TGG 0.679385 4_2:+2030046 Msa0583470:CDS
TATGATGCAGGTGACATGGG+TGG 0.686232 4_2:+2029454 Msa0583470:intron
CAAACAAATATAGAAGCACA+AGG 0.687269 4_2:+2025162 Msa0583470:CDS
TGTGTAGCAATAAATGCGGG+AGG 0.696223 4_2:+2029767 Msa0583470:intron
ATTGCCAAAGGACATGACCA+TGG 0.701545 4_2:+2030091 Msa0583470:CDS
GCACTAAGCACAATCCCCGG+TGG 0.713315 4_2:-2029947 None:intergenic
AGCTTCTTGCAATCACACAA+GGG 0.721070 4_2:-2026996 None:intergenic
AAACAAGCACAGACGCATCG+GGG 0.726013 4_2:+2031423 Msa0583470:CDS
AGGACGTTAGGGTAATGACA+AGG 0.727528 4_2:+2029900 Msa0583470:CDS
TGAAGCGGGTAGCCAAACTG+AGG 0.731803 4_2:-2029975 None:intergenic
CTCCCCGCTAGAGAACACTC+AGG 0.744703 4_2:+2029617 Msa0583470:CDS
TCCGACGGCAAAGCTCACGG+TGG 0.748267 4_2:+2031655 Msa0583470:CDS
ACAAATATAGAAGCACAAGG+TGG 0.748500 4_2:+2025165 Msa0583470:CDS
AAAGTAGGAGTTGATAAACG+AGG 0.750797 4_2:-2024993 None:intergenic
ATGCATGTAGTAATGAACGG+CGG 0.775511 4_2:+2031482 Msa0583470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATAAAAAATAATTGTT+TGG + chr4_2:2025442-2025461 Msa0583470:intron 10.0%
!! ATAAATTTAGAAACAAAAAA+TGG + chr4_2:2025726-2025745 Msa0583470:intron 10.0%
!!! TTTATTTTTTTCATTTTACT+TGG + chr4_2:2026598-2026617 Msa0583470:intron 10.0%
!!! AATTTTTTATATACATCTAT+TGG - chr4_2:2027501-2027520 None:intergenic 10.0%
!! CATATATTACAAAAATTATT+AGG - chr4_2:2027809-2027828 None:intergenic 10.0%
!!! AATTTTTGTAATATATGTAA+AGG + chr4_2:2027812-2027831 Msa0583470:intron 10.0%
!!! TTTATTTATTTATTTCAAGT+TGG + chr4_2:2027891-2027910 Msa0583470:intron 10.0%
!! CATTATAAAATTAATAACAT+GGG - chr4_2:2028104-2028123 None:intergenic 10.0%
!!! CATGTTATTAATTTTATAAT+GGG + chr4_2:2028103-2028122 Msa0583470:intron 10.0%
!! CAACAAATTAATTATTTAAA+AGG - chr4_2:2028470-2028489 None:intergenic 10.0%
!! TAATAAAAAACACTTAATTA+TGG - chr4_2:2030261-2030280 None:intergenic 10.0%
!!! TTTTGTCTTTTATATTTTGT+AGG + chr4_2:2025466-2025485 Msa0583470:intron 15.0%
!! AAAAAAATAAAATTAGAGAC+CGG - chr4_2:2025758-2025777 None:intergenic 15.0%
!!! AAAAGAAATTTTTAATCATG+AGG + chr4_2:2026364-2026383 Msa0583470:CDS 15.0%
!!! TTGCAAATATAATTTTTTAG+TGG + chr4_2:2026884-2026903 Msa0583470:intron 15.0%
!! CTAAAACATTATAGTATTAA+TGG - chr4_2:2027124-2027143 None:intergenic 15.0%
!!! TTTAAAGTGATGAAAATAAA+AGG - chr4_2:2027150-2027169 None:intergenic 15.0%
!!! TTTATTACTTTTTGGAATTT+GGG - chr4_2:2027759-2027778 None:intergenic 15.0%
!! CCATTATAAAATTAATAACA+TGG - chr4_2:2028105-2028124 None:intergenic 15.0%
!!! CCATGTTATTAATTTTATAA+TGG + chr4_2:2028102-2028121 Msa0583470:intron 15.0%
!! GTTATATAATATATTCAATG+TGG + chr4_2:2028636-2028655 Msa0583470:intron 15.0%
!!! TAATCAAGTGTTTTAAAAAA+TGG + chr4_2:2030284-2030303 Msa0583470:intron 15.0%
!! AATTTGAGCTATTTATTTAT+GGG + chr4_2:2030501-2030520 Msa0583470:intron 15.0%
!! TTTGATCATATATAAACAAA+GGG - chr4_2:2030705-2030724 None:intergenic 15.0%
!! AATTGAAATTTAGAAATGAA+TGG + chr4_2:2030763-2030782 Msa0583470:intron 15.0%
!!! TTTTCTAAACATCAAAATTT+AGG - chr4_2:2031065-2031084 None:intergenic 15.0%
!!! TTTTTTATGTTCTTCTTGTT+TGG + chr4_2:2025117-2025136 Msa0583470:intron 20.0%
!!! TTTTTATGTTCTTCTTGTTT+GGG + chr4_2:2025118-2025137 Msa0583470:intron 20.0%
!! AATTTCCATCAAACAAATAA+TGG + chr4_2:2025213-2025232 Msa0583470:CDS 20.0%
!!! AAAGATGAACTTTTTTTTGA+AGG - chr4_2:2025414-2025433 None:intergenic 20.0%
!!! AACTTTTTTTTTCTTCTTCT+AGG - chr4_2:2025695-2025714 None:intergenic 20.0%
!! AAACAAAAAATGGTAAAAAC+CGG + chr4_2:2025736-2025755 Msa0583470:intron 20.0%
!!! AGTTTAGAAATTGGTTTTAA+TGG + chr4_2:2026107-2026126 Msa0583470:CDS 20.0%
!! GTAACAAATACTAATAGTAA+TGG + chr4_2:2026224-2026243 Msa0583470:CDS 20.0%
!! CATGAGATAATTGTAAATAT+TGG - chr4_2:2026714-2026733 None:intergenic 20.0%
!!! GCATCATGTATTTTATAAAA+GGG - chr4_2:2027474-2027493 None:intergenic 20.0%
!! AGAGATGAAAAATACAAAAT+TGG - chr4_2:2027657-2027676 None:intergenic 20.0%
!!! CTTTATTACTTTTTGGAATT+TGG - chr4_2:2027760-2027779 None:intergenic 20.0%
!! CAAATTCCAAAAAGTAATAA+AGG + chr4_2:2027758-2027777 Msa0583470:intron 20.0%
!!! ATTGAGCAATATTTTAAAGT+TGG + chr4_2:2027943-2027962 Msa0583470:intron 20.0%
!!! TTGAGCAATATTTTAAAGTT+GGG + chr4_2:2027944-2027963 Msa0583470:intron 20.0%
!! TATAAAAGAGTAATGTTAAC+CGG - chr4_2:2028270-2028289 None:intergenic 20.0%
!! TGAATCCATTAATTTAATCA+TGG + chr4_2:2028393-2028412 Msa0583470:intron 20.0%
!! CAAGTACATACATAAAATAA+TGG - chr4_2:2028822-2028841 None:intergenic 20.0%
!! TTGCCAAATTATAGTATATA+TGG + chr4_2:2029052-2029071 Msa0583470:intron 20.0%
!! TGCCAAATTATAGTATATAT+GGG + chr4_2:2029053-2029072 Msa0583470:intron 20.0%
!! CAAATATAACTACTAATTTC+AGG + chr4_2:2029127-2029146 Msa0583470:intron 20.0%
!! TAATAACTCGATTATTTAGA+AGG + chr4_2:2029156-2029175 Msa0583470:intron 20.0%
!! TTAGACTATGAAATTTGTAA+CGG + chr4_2:2029202-2029221 Msa0583470:intron 20.0%
!! TAATGGTATAACTAATAACA+TGG + chr4_2:2029415-2029434 Msa0583470:intron 20.0%
!! TAAGAAAATGATATTGAAGA+TGG - chr4_2:2030159-2030178 None:intergenic 20.0%
!! ACTTAATTATGGTATTAGTT+TGG - chr4_2:2030250-2030269 None:intergenic 20.0%
!! AATTGAATCATATTTCACTA+TGG - chr4_2:2030485-2030504 None:intergenic 20.0%
!! CAATTTGAGCTATTTATTTA+TGG + chr4_2:2030500-2030519 Msa0583470:intron 20.0%
!! TCAATGTAAATATACTACTT+TGG - chr4_2:2030566-2030585 None:intergenic 20.0%
!! TAAAAATAGAAACATTGCAT+TGG - chr4_2:2030643-2030662 None:intergenic 20.0%
!! GTTTGATCATATATAAACAA+AGG - chr4_2:2030706-2030725 None:intergenic 20.0%
!!! AAATTTAGGTTAAAAGAATG+AGG - chr4_2:2031051-2031070 None:intergenic 20.0%
!! GAAAAAGAAAACAAAAAATG+TGG + chr4_2:2031080-2031099 Msa0583470:intron 20.0%
!!! CTTATATCATGAAATTTTGT+TGG + chr4_2:2031195-2031214 Msa0583470:intron 20.0%
!!! TTTGATTTTTAGAGTTTTGT+TGG - chr4_2:2031322-2031341 None:intergenic 20.0%
!! TATGTATGAAGAACCTTTTA+TGG + chr4_2:2024886-2024905 Msa0583470:five_prime_UTR 25.0%
!! TTTTAATCAAGCACCATAAA+AGG - chr4_2:2024902-2024921 None:intergenic 25.0%
!! ATTTCTACTTTGATGAGTTT+TGG + chr4_2:2024929-2024948 Msa0583470:five_prime_UTR 25.0%
! TCAAACCATTATTTGTTTGA+TGG - chr4_2:2025221-2025240 None:intergenic 25.0%
! AAACAAATAATGGTTTGAGA+AGG + chr4_2:2025223-2025242 Msa0583470:CDS 25.0%
!! TCATTTGTGTTCTTCTATTT+TGG - chr4_2:2025584-2025603 None:intergenic 25.0%
! AAATAGAAGAACACAAATGA+AGG + chr4_2:2025584-2025603 Msa0583470:CDS 25.0%
!!! ACTTTTGGAAAGTGTTTTTT+TGG - chr4_2:2025613-2025632 None:intergenic 25.0%
!! GGAATAGTATCTTTTTCTTT+TGG + chr4_2:2025647-2025666 Msa0583470:intron 25.0%
!! TGGAGTTCAATATTTTCATA+CGG + chr4_2:2025667-2025686 Msa0583470:intron 25.0%
!! TTGATAATATCAGACTCAAT+TGG + chr4_2:2025839-2025858 Msa0583470:intron 25.0%
! GAAATTTCACTAATAATTGC+TGG - chr4_2:2025972-2025991 None:intergenic 25.0%
! AATTACAAGAGGAACAAATA+TGG + chr4_2:2026202-2026221 Msa0583470:CDS 25.0%
! TTAATCATGAGGAATATACA+AGG + chr4_2:2026375-2026394 Msa0583470:CDS 25.0%
! ATTATTAGTACTCCTTGTAT+TGG + chr4_2:2026398-2026417 Msa0583470:CDS 25.0%
!!! TTTGGTTTTAAACCAATACA+AGG - chr4_2:2026413-2026432 None:intergenic 25.0%
!!! TGTATTGGTTTAAAACCAAA+TGG + chr4_2:2026413-2026432 Msa0583470:CDS 25.0%
! TTGAATGAAGTAGTTGAAAA+AGG - chr4_2:2026523-2026542 None:intergenic 25.0%
!!! GTTTAATTTGAACTATGTCA+TGG + chr4_2:2026733-2026752 Msa0583470:intron 25.0%
!! CGCATCATGTATTTTATAAA+AGG - chr4_2:2027475-2027494 None:intergenic 25.0%
!!! TAACATTGGTTTACATGTTA+GGG + chr4_2:2027615-2027634 Msa0583470:intron 25.0%
!!! GTGAATCCTTTATTACTTTT+TGG - chr4_2:2027767-2027786 None:intergenic 25.0%
!!! TGAGCAATATTTTAAAGTTG+GGG + chr4_2:2027945-2027964 Msa0583470:intron 25.0%
! TGATTTCTTAATCAATGATC+CGG + chr4_2:2028239-2028258 Msa0583470:intron 25.0%
! GACTTCCATGATTAAATTAA+TGG - chr4_2:2028401-2028420 None:intergenic 25.0%
! TGAACCCTATAAAAACATAT+AGG + chr4_2:2028610-2028629 Msa0583470:intron 25.0%
!!! CTGACCTATATGTTTTTATA+GGG - chr4_2:2028617-2028636 None:intergenic 25.0%
!!! ACTGACCTATATGTTTTTAT+AGG - chr4_2:2028618-2028637 None:intergenic 25.0%
! GTCTATTATCTTGATTCAAA+GGG - chr4_2:2028663-2028682 None:intergenic 25.0%
! AGTCTATTATCTTGATTCAA+AGG - chr4_2:2028664-2028683 None:intergenic 25.0%
!!! TCTTTTTGCTATAAGTGTTT+GGG + chr4_2:2028694-2028713 Msa0583470:intron 25.0%
! GCTACATGCAATATAAAATT+AGG - chr4_2:2028761-2028780 None:intergenic 25.0%
! TTGATTATGATCATGATTCA+TGG - chr4_2:2028938-2028957 None:intergenic 25.0%
! AGCCCATATATACTATAATT+TGG - chr4_2:2029058-2029077 None:intergenic 25.0%
!! CATAGTCTAAGCTTTAATAA+TGG - chr4_2:2029192-2029211 None:intergenic 25.0%
! AATAGCTAACAATTATGTTG+TGG + chr4_2:2029303-2029322 Msa0583470:intron 25.0%
!! TATTTCACTATGGTAATGTT+CGG - chr4_2:2030475-2030494 None:intergenic 25.0%
! AAGACAATTTGTAACAGAAA+AGG + chr4_2:2030937-2030956 Msa0583470:intron 25.0%
! AGACAATTTGTAACAGAAAA+GGG + chr4_2:2030938-2030957 Msa0583470:intron 25.0%
!!! AGTTTCAGATTTTGACTTTT+TGG - chr4_2:2030988-2031007 None:intergenic 25.0%
! CTCAAAAGTTAGAAAAATGT+AGG - chr4_2:2031022-2031041 None:intergenic 25.0%
!!! GTCTTTTTCGTTAAGTTTTA+GGG - chr4_2:2031138-2031157 None:intergenic 25.0%
!!! TGTCTTTTTCGTTAAGTTTT+AGG - chr4_2:2031139-2031158 None:intergenic 25.0%
! AAAATACAAACAACTCAAAG+TGG - chr4_2:2031789-2031808 None:intergenic 25.0%
!! AATTTAGTTTCGTAGTTATG+AGG + chr4_2:2031923-2031942 Msa0583470:three_prime_UTR 25.0%
AGGTTCTTCATACATAAGTA+GGG - chr4_2:2024882-2024901 None:intergenic 30.0%
AAGGTTCTTCATACATAAGT+AGG - chr4_2:2024883-2024902 None:intergenic 30.0%
AACATGGATTTAACCAAAGT+AGG - chr4_2:2025011-2025030 None:intergenic 30.0%
! CAAACAAATATAGAAGCACA+AGG + chr4_2:2025162-2025181 Msa0583470:CDS 30.0%
TGGTGATATGAAGAGATTAA+TGG + chr4_2:2025185-2025204 Msa0583470:CDS 30.0%
!!! TGATAACGTTTTTTTCTTGG+CGG - chr4_2:2025339-2025358 None:intergenic 30.0%
!! TCAAGTTCTTGAATTTGTTG+AGG - chr4_2:2025372-2025391 None:intergenic 30.0%
!!! CAAGTCTTTGTTTTTCATCA+GGG - chr4_2:2025512-2025531 None:intergenic 30.0%
!!! TCAAGTCTTTGTTTTTCATC+AGG - chr4_2:2025513-2025532 None:intergenic 30.0%
AAAGACTTGAACTTAGCAAA+AGG + chr4_2:2025523-2025542 Msa0583470:CDS 30.0%
! AAACAAGACAAGTCAAGTTT+TGG + chr4_2:2025556-2025575 Msa0583470:CDS 30.0%
! CATGTGAATACAAAGACTTT+TGG - chr4_2:2025628-2025647 None:intergenic 30.0%
CAAAAGTCTTTGTATTCACA+TGG + chr4_2:2025626-2025645 Msa0583470:intron 30.0%
AATCCAATGTGTTCAAATTG+TGG + chr4_2:2025942-2025961 Msa0583470:CDS 30.0%
TTTGTTCCTCTTGTAATTGA+AGG - chr4_2:2026200-2026219 None:intergenic 30.0%
!!! TAATGGTTTTGATAGACCAA+TGG + chr4_2:2026241-2026260 Msa0583470:CDS 30.0%
! TATGTTTCTTGAACTTGCTT+TGG + chr4_2:2026271-2026290 Msa0583470:CDS 30.0%
TGTTGTTATCATAAACAGCT+TGG + chr4_2:2026466-2026485 Msa0583470:CDS 30.0%
TAATTTGAACTATGTCATGG+AGG + chr4_2:2026736-2026755 Msa0583470:intron 30.0%
GTGATATCTAGTGGAATAAA+TGG + chr4_2:2027030-2027049 Msa0583470:CDS 30.0%
ATTACCTTAGAGTAACCATT+TGG - chr4_2:2027421-2027440 None:intergenic 30.0%
! GCAAAATTAGCTTCTAACAT+TGG + chr4_2:2027601-2027620 Msa0583470:intron 30.0%
!! CTAACATTGGTTTACATGTT+AGG + chr4_2:2027614-2027633 Msa0583470:intron 30.0%
!!! TTACTTTTTGGAATTTGGGA+AGG - chr4_2:2027755-2027774 None:intergenic 30.0%
AAACAGTTGAGATAGTAGTA+CGG - chr4_2:2027854-2027873 None:intergenic 30.0%
GTGTACAAGTAATTGAAACA+TGG + chr4_2:2027913-2027932 Msa0583470:intron 30.0%
!!! CAATATTTTAAAGTTGGGGA+GGG + chr4_2:2027949-2027968 Msa0583470:intron 30.0%
!!! AATATTTTAAAGTTGGGGAG+GGG + chr4_2:2027950-2027969 Msa0583470:intron 30.0%
! TTTTCTTAGTTTCCTTACAC+TGG - chr4_2:2028138-2028157 None:intergenic 30.0%
AGTGTAAGGAAACTAAGAAA+AGG + chr4_2:2028137-2028156 Msa0583470:intron 30.0%
GATTTCTTAATCAATGATCC+GGG + chr4_2:2028240-2028259 Msa0583470:intron 30.0%
! AGTCTCCATCACTTAAATTT+TGG + chr4_2:2028417-2028436 Msa0583470:intron 30.0%
AGCTACCAAAATTTAAGTGA+TGG - chr4_2:2028425-2028444 None:intergenic 30.0%
! TTTTTATAGGGTTCAAAACC+AGG - chr4_2:2028605-2028624 None:intergenic 30.0%
!! GTCTTTTTGCTATAAGTGTT+TGG + chr4_2:2028693-2028712 Msa0583470:intron 30.0%
!!! ATTTGCTATATTTTGCAGTG+TGG - chr4_2:2028729-2028748 None:intergenic 30.0%
TACTAGATAAAGTCATCATC+CGG - chr4_2:2028796-2028815 None:intergenic 30.0%
CAAGTATGAACAGAAAATCT+TGG - chr4_2:2028904-2028923 None:intergenic 30.0%
!! TATGAAATTTGTAACGGACT+TGG + chr4_2:2029208-2029227 Msa0583470:intron 30.0%
TACAATAAACTTCGCAAAGT+TGG + chr4_2:2029359-2029378 Msa0583470:intron 30.0%
ACAATAAACTTCGCAAAGTT+GGG + chr4_2:2029360-2029379 Msa0583470:intron 30.0%
AAGTTGGGATTTCATGAATA+TGG + chr4_2:2029375-2029394 Msa0583470:intron 30.0%
TTTACATGAACATATGATGC+AGG + chr4_2:2029442-2029461 Msa0583470:intron 30.0%
TTGTTAAATGTGTGTGTGTA+TGG - chr4_2:2029707-2029726 None:intergenic 30.0%
CACAAAAGTTGTTTGTCATT+CGG - chr4_2:2029820-2029839 None:intergenic 30.0%
! AGGAAATCAAAGACTTTTTG+TGG - chr4_2:2030001-2030020 None:intergenic 30.0%
AGAAACATTGCATTGGAAAA+TGG - chr4_2:2030636-2030655 None:intergenic 30.0%
AAATGCTAAATAGTGTCCTT+GGG - chr4_2:2030682-2030701 None:intergenic 30.0%
ATGAAAAGGTGAAATTGAGA+AGG + chr4_2:2030883-2030902 Msa0583470:intron 30.0%
AAACAAAAAATGTGGTACCA+AGG + chr4_2:2031088-2031107 Msa0583470:intron 30.0%
!!! TTTTCGTTAAGTTTTAGGGT+TGG - chr4_2:2031134-2031153 None:intergenic 30.0%
! TTCTGGAAAATGTTGATTGT+AGG + chr4_2:2031899-2031918 Msa0583470:three_prime_UTR 30.0%
! TCTGGAAAATGTTGATTGTA+GGG + chr4_2:2031900-2031919 Msa0583470:three_prime_UTR 30.0%
!! AAAGTAGGAGTTGATAAACG+AGG - chr4_2:2024996-2025015 None:intergenic 35.0%
TCGTTTATCAACTCCTACTT+TGG + chr4_2:2024995-2025014 Msa0583470:CDS 35.0%
AAATCCATGTTCAACTCATC+TGG + chr4_2:2025020-2025039 Msa0583470:CDS 35.0%
! TAAACCAGATGAGTTGAACA+TGG - chr4_2:2025027-2025046 None:intergenic 35.0%
! ACAAATATAGAAGCACAAGG+TGG + chr4_2:2025165-2025184 Msa0583470:CDS 35.0%
GATAACATGGATGGTATTTC+TGG + chr4_2:2025288-2025307 Msa0583470:CDS 35.0%
!!! TTTTTTTCTTGGCGGATTGT+CGG - chr4_2:2025331-2025350 None:intergenic 35.0%
!!! CGGTGATAACGTTTTTTTCT+TGG - chr4_2:2025342-2025361 None:intergenic 35.0%
!! ACTTAGCAAAAGGCTTTGTT+TGG + chr4_2:2025533-2025552 Msa0583470:CDS 35.0%
TGTCAATAAGAGAAGCAATG+AGG + chr4_2:2025919-2025938 Msa0583470:CDS 35.0%
CCAATTTCTAAACTCGAGTT+TGG - chr4_2:2026101-2026120 None:intergenic 35.0%
CCAAACTCGAGTTTAGAAAT+TGG + chr4_2:2026098-2026117 Msa0583470:CDS 35.0%
! ATGCCTTTAGGTCAAGATTT+TGG + chr4_2:2026155-2026174 Msa0583470:CDS 35.0%
ATGCCAAAATCTTGACCTAA+AGG - chr4_2:2026161-2026180 None:intergenic 35.0%
!! TTTAGGTCAAGATTTTGGCA+TGG + chr4_2:2026160-2026179 Msa0583470:CDS 35.0%
AATGGATGAGTTAGTGAAGA+TGG + chr4_2:2026298-2026317 Msa0583470:CDS 35.0%
TCAACACTTCTAATCCAAAG+AGG - chr4_2:2026338-2026357 None:intergenic 35.0%
!! TGGATTAGAAGTGTTGAAAG+TGG + chr4_2:2026341-2026360 Msa0583470:CDS 35.0%
!!! ACCAAATGGTTTTGTTTCTG+AGG + chr4_2:2026427-2026446 Msa0583470:CDS 35.0%
GGCTCTTGTTGAAACTTTAA+TGG + chr4_2:2026487-2026506 Msa0583470:CDS 35.0%
! CTTAGCCTTTCAATCATTCT+TGG + chr4_2:2026561-2026580 Msa0583470:intron 35.0%
CTAAGCCAAGAATGATTGAA+AGG - chr4_2:2026569-2026588 None:intergenic 35.0%
CTTTCAATCATTCTTGGCTT+AGG + chr4_2:2026567-2026586 Msa0583470:intron 35.0%
CTGTTGTATAACAGAATCGA+TGG + chr4_2:2026962-2026981 Msa0583470:intron 35.0%
ACTAGATATCACTTCAGTTG+TGG - chr4_2:2027022-2027041 None:intergenic 35.0%
ACAACTGAAGTGATATCTAG+TGG + chr4_2:2027021-2027040 Msa0583470:CDS 35.0%
GGAATAAATGGAACCAGAAA+TGG + chr4_2:2027042-2027061 Msa0583470:CDS 35.0%
ACTTCAAGTACTTTCTCCAT+TGG + chr4_2:2027231-2027250 Msa0583470:CDS 35.0%
CTCCTACAGTTAAGAAAAGT+GGG - chr4_2:2027367-2027386 None:intergenic 35.0%
TATGCCAAATGGTTACTCTA+AGG + chr4_2:2027414-2027433 Msa0583470:CDS 35.0%
!!! GCAATATTTTAAAGTTGGGG+AGG + chr4_2:2027948-2027967 Msa0583470:intron 35.0%
!!! ATATTTTAAAGTTGGGGAGG+GGG + chr4_2:2027951-2027970 Msa0583470:intron 35.0%
AACACAAAGCTAAGGAATCA+TGG + chr4_2:2027976-2027995 Msa0583470:intron 35.0%
ATGAGCTTTCTAAGTTGCTT+GGG - chr4_2:2028014-2028033 None:intergenic 35.0%
! TTTTGTGATAGACACAAGAG+AGG - chr4_2:2028331-2028350 None:intergenic 35.0%
AGTGATGAACACATCAATGT+AGG + chr4_2:2028359-2028378 Msa0583470:intron 35.0%
CATCAATGTAGGTGAAATCT+AGG + chr4_2:2028370-2028389 Msa0583470:intron 35.0%
ATTCATGAAATTGTGTGACC+TGG + chr4_2:2028584-2028603 Msa0583470:intron 35.0%
!! ATGTAGCTTCTCTAAAATCC+CGG + chr4_2:2028774-2028793 Msa0583470:intron 35.0%
ACTAGATAAAGTCATCATCC+GGG - chr4_2:2028795-2028814 None:intergenic 35.0%
TCTCCATAAGATAGATACCT+TGG + chr4_2:2028847-2028866 Msa0583470:intron 35.0%
! AGACCAAGGTATCTATCTTA+TGG - chr4_2:2028853-2028872 None:intergenic 35.0%
CTGTTCATACTTGTACATCA+TGG + chr4_2:2028911-2028930 Msa0583470:intron 35.0%
ATCATTCACACATGTTGAAC+AGG - chr4_2:2028979-2028998 None:intergenic 35.0%
TTCACAAGATTACAGTGACA+TGG - chr4_2:2029093-2029112 None:intergenic 35.0%
GATTATTTAGAAGGATGCGT+CGG + chr4_2:2029165-2029184 Msa0583470:intron 35.0%
TGGGATTTCATGAATATGGT+AGG + chr4_2:2029379-2029398 Msa0583470:intron 35.0%
ATATGGTAGGAAAATGAGCA+TGG + chr4_2:2029392-2029411 Msa0583470:intron 35.0%
TAGGAAAATGAGCATGGTAA+TGG + chr4_2:2029398-2029417 Msa0583470:intron 35.0%
! GAGTGATGATGACATTAAGA+TGG - chr4_2:2029600-2029619 None:intergenic 35.0%
TATTTGTCCACAATAACCCA+CGG + chr4_2:2029731-2029750 Msa0583470:intron 35.0%
CCTATGTGTAGCAATAAATG+CGG + chr4_2:2029763-2029782 Msa0583470:intron 35.0%
CTATGTGTAGCAATAAATGC+GGG + chr4_2:2029764-2029783 Msa0583470:intron 35.0%
! ATGACAAACAACTTTTGTGC+CGG + chr4_2:2029821-2029840 Msa0583470:CDS 35.0%
AAATGGAACAAATTGGATGC+AGG + chr4_2:2029866-2029885 Msa0583470:CDS 35.0%
AATGGAACAAATTGGATGCA+GGG + chr4_2:2029867-2029886 Msa0583470:CDS 35.0%
! AAAGACTTTTTGTGGTGAAG+CGG - chr4_2:2029993-2030012 None:intergenic 35.0%
GGTAATGTTCGGCAATAATA+TGG - chr4_2:2030464-2030483 None:intergenic 35.0%
CATTGGAAAATGGTGAAAAG+TGG - chr4_2:2030626-2030645 None:intergenic 35.0%
AATGCTAAATAGTGTCCTTG+GGG - chr4_2:2030681-2030700 None:intergenic 35.0%
GAAATGCTAAATAGTGTCCT+TGG - chr4_2:2030683-2030702 None:intergenic 35.0%
AGGACAGGGTTGAAAATATT+TGG + chr4_2:2030903-2030922 Msa0583470:intron 35.0%
GTAGTCAATAAGTCAAACCT+TGG - chr4_2:2031108-2031127 None:intergenic 35.0%
!!! CGTTGTTTTTTTCTCTTTGC+AGG + chr4_2:2031361-2031380 Msa0583470:intron 35.0%
TTCATTACTACATGCATTGC+GGG - chr4_2:2031479-2031498 None:intergenic 35.0%
GTTCATTACTACATGCATTG+CGG - chr4_2:2031480-2031499 None:intergenic 35.0%
GCAATGCATGTAGTAATGAA+CGG + chr4_2:2031479-2031498 Msa0583470:CDS 35.0%
! TTTTCCAGAAGTCGTGATAA+TGG - chr4_2:2031889-2031908 None:intergenic 35.0%
! CAGATCTGGTAGTGATAACA+TGG + chr4_2:2025275-2025294 Msa0583470:CDS 40.0%
! TCTGGTAGTGATAACATGGA+TGG + chr4_2:2025279-2025298 Msa0583470:CDS 40.0%
!! GAATTTGTTGAGGAGTGTGT+CGG - chr4_2:2025362-2025381 None:intergenic 40.0%
!!! CTTTGTTTTTCATCAGGGTG+AGG - chr4_2:2025507-2025526 None:intergenic 40.0%
GTCACGAGAATTCACTACTT+AGG + chr4_2:2025865-2025884 Msa0583470:CDS 40.0%
CCTCCACAATTTGAACACAT+TGG - chr4_2:2025948-2025967 None:intergenic 40.0%
CCAATGTGTTCAAATTGTGG+AGG + chr4_2:2025945-2025964 Msa0583470:CDS 40.0%
!! TTGGTAACGACGTAATTGGA+CGG - chr4_2:2026082-2026101 None:intergenic 40.0%
!! GAGTTTGGTAACGACGTAAT+TGG - chr4_2:2026086-2026105 None:intergenic 40.0%
TTGCCTTCAACAATGCCTTT+AGG + chr4_2:2026143-2026162 Msa0583470:CDS 40.0%
!! TGACCTAAAGGCATTGTTGA+AGG - chr4_2:2026149-2026168 None:intergenic 40.0%
TCACCACCTTCAATTACAAG+AGG + chr4_2:2026191-2026210 Msa0583470:CDS 40.0%
GTTCCTCTTGTAATTGAAGG+TGG - chr4_2:2026197-2026216 None:intergenic 40.0%
!! GTTTTGATAGACCAATGGAG+AGG + chr4_2:2026246-2026265 Msa0583470:CDS 40.0%
AGAAACATAGACCTCTCCAT+TGG - chr4_2:2026260-2026279 None:intergenic 40.0%
CACAAACTAATGAGCCTCTT+TGG + chr4_2:2026321-2026340 Msa0583470:CDS 40.0%
GCCTCAGAAACAAAACCATT+TGG - chr4_2:2026431-2026450 None:intergenic 40.0%
GAAAGGCTAAGAAGAGAAGT+TGG - chr4_2:2026552-2026571 None:intergenic 40.0%
GGAGTAGTCATTAGTGTTAC+AGG - chr4_2:2026693-2026712 None:intergenic 40.0%
AGCTTCTTGCAATCACACAA+GGG - chr4_2:2026999-2027018 None:intergenic 40.0%
! TTCGTGAGGTGAGTTTTCTA+AGG + chr4_2:2027260-2027279 Msa0583470:CDS 40.0%
AGCTTCTCTGATGGTATCTA+TGG - chr4_2:2027332-2027351 None:intergenic 40.0%
!! CACCCACTTTTCTTAACTGT+AGG + chr4_2:2027362-2027381 Msa0583470:CDS 40.0%
CCTCCTACAGTTAAGAAAAG+TGG - chr4_2:2027368-2027387 None:intergenic 40.0%
!! CCACTTTTCTTAACTGTAGG+AGG + chr4_2:2027365-2027384 Msa0583470:CDS 40.0%
GTGGTTCAAGATATGCCAAA+TGG + chr4_2:2027403-2027422 Msa0583470:CDS 40.0%
CATGAGCTTTCTAAGTTGCT+TGG - chr4_2:2028015-2028034 None:intergenic 40.0%
CAAGCAACTTAGAAAGCTCA+TGG + chr4_2:2028013-2028032 Msa0583470:intron 40.0%
ATAACATGGGAACCATCACT+GGG - chr4_2:2028091-2028110 None:intergenic 40.0%
AATAACATGGGAACCATCAC+TGG - chr4_2:2028092-2028111 None:intergenic 40.0%
AGTCTCTCAAATATGCAACC+TGG + chr4_2:2028293-2028312 Msa0583470:intron 40.0%
GTCTCTCAAATATGCAACCT+GGG + chr4_2:2028294-2028313 Msa0583470:intron 40.0%
TCTATTCCAATCTCTCATGC+AGG + chr4_2:2028535-2028554 Msa0583470:intron 40.0%
AGAAAATCTTGGAGAAAGCC+TGG - chr4_2:2028893-2028912 None:intergenic 40.0%
CACATGTTGAACAGGAATGA+AGG - chr4_2:2028971-2028990 None:intergenic 40.0%
AACATATGATGCAGGTGACA+TGG + chr4_2:2029450-2029469 Msa0583470:intron 40.0%
ACATATGATGCAGGTGACAT+GGG + chr4_2:2029451-2029470 Msa0583470:intron 40.0%
TATAGACCCTTGCTAAGCTT+AGG + chr4_2:2029515-2029534 Msa0583470:CDS 40.0%
AGATGGCTAGACATTCACAT+TGG - chr4_2:2029583-2029602 None:intergenic 40.0%
TATACCTGAGTGTTCTCTAG+CGG - chr4_2:2029624-2029643 None:intergenic 40.0%
! TGTAAGTTGAGGATCCACAT+TGG - chr4_2:2029667-2029686 None:intergenic 40.0%
AATCCTCTAGCTGTAAGTTG+AGG - chr4_2:2029678-2029697 None:intergenic 40.0%
ACATAGGAACATAACACCGT+GGG - chr4_2:2029750-2029769 None:intergenic 40.0%
CCGCATTTATTGCTACACAT+AGG - chr4_2:2029766-2029785 None:intergenic 40.0%
GGTGCACAAATGGAACAAAT+TGG + chr4_2:2029859-2029878 Msa0583470:CDS 40.0%
AAATTGGATGCAGGGAATGT+GGG + chr4_2:2029875-2029894 Msa0583470:CDS 40.0%
! AAGACTTTTTGTGGTGAAGC+GGG - chr4_2:2029992-2030011 None:intergenic 40.0%
ACGAGAAGCTTAGAAGTGAA+TGG + chr4_2:2030026-2030045 Msa0583470:CDS 40.0%
CGAGAAGCTTAGAAGTGAAT+GGG + chr4_2:2030027-2030046 Msa0583470:CDS 40.0%
ATATGCATACACTAGCTCGT+AGG - chr4_2:2030132-2030151 None:intergenic 40.0%
TTCCTTAACCATTGTCCTGA+AGG - chr4_2:2030542-2030561 None:intergenic 40.0%
TCATCTTAACCAATACCCCA+AGG + chr4_2:2030663-2030682 Msa0583470:intron 40.0%
AAATAGTGTCCTTGGGGTAT+TGG - chr4_2:2030675-2030694 None:intergenic 40.0%
!! TTGTTTTGTCGCGTAGTCAT+TGG + chr4_2:2030860-2030879 Msa0583470:intron 40.0%
AAGGTGAAATTGAGAAGGAC+AGG + chr4_2:2030888-2030907 Msa0583470:intron 40.0%
AGGTGAAATTGAGAAGGACA+GGG + chr4_2:2030889-2030908 Msa0583470:intron 40.0%
ATGCATGTAGTAATGAACGG+CGG + chr4_2:2031482-2031501 Msa0583470:CDS 40.0%
GAAGGCTATTCACAAGTATC+TGG - chr4_2:2031637-2031656 None:intergenic 40.0%
CGTGATTGTTAGAGCAAGAT+CGG + chr4_2:2031856-2031875 Msa0583470:three_prime_UTR 40.0%
GGTTGTGAGATTGCACTAGA+AGG - chr4_2:2024975-2024994 None:intergenic 45.0%
GAACATGAAAGCTGCAGATC+TGG + chr4_2:2025261-2025280 Msa0583470:CDS 45.0%
! TGAACTTGCTTTGGCTGCAA+TGG + chr4_2:2026280-2026299 Msa0583470:CDS 45.0%
! TCTGAGGCTTCTAGAGAAAG+TGG + chr4_2:2026443-2026462 Msa0583470:CDS 45.0%
GAGCTTCTTGCAATCACACA+AGG - chr4_2:2027000-2027019 None:intergenic 45.0%
! CAGTTGTAGAGCACCATTTC+TGG - chr4_2:2027058-2027077 None:intergenic 45.0%
CAGAAATGGTGCTCTACAAC+TGG + chr4_2:2027056-2027075 Msa0583470:CDS 45.0%
AGAAAACTCACCTCACGAAC+AGG - chr4_2:2027259-2027278 None:intergenic 45.0%
! TTTTGCAAGCAGCATGCAGA+AGG + chr4_2:2027283-2027302 Msa0583470:CDS 45.0%
TTTGCAAGCAGCATGCAGAA+GGG + chr4_2:2027284-2027303 Msa0583470:CDS 45.0%
TCTTGAACCACACAACCAGA+AGG - chr4_2:2027394-2027413 None:intergenic 45.0%
AGGGGGAAAACACAAAGCTA+AGG + chr4_2:2027968-2027987 Msa0583470:intron 45.0%
GGGTCATGTTAACCAGTGTA+AGG + chr4_2:2028123-2028142 Msa0583470:intron 45.0%
TCAAATATGCAACCTGGGCT+AGG + chr4_2:2028299-2028318 Msa0583470:intron 45.0%
GAACAACCTGCATGAGAGAT+TGG - chr4_2:2028544-2028563 None:intergenic 45.0%
GGCAAAATCACGAGTATTCG+CGG - chr4_2:2029037-2029056 None:intergenic 45.0%
GTCTATAGAGCTGGTGAACT+TGG - chr4_2:2029502-2029521 None:intergenic 45.0%
TTAGCAAGGGTCTATAGAGC+TGG - chr4_2:2029511-2029530 None:intergenic 45.0%
! CTAAGCTTAGGCATGGGTTT+TGG + chr4_2:2029527-2029546 Msa0583470:CDS 45.0%
! ACATTCACATTGGCGTTGGA+GGG - chr4_2:2029573-2029592 None:intergenic 45.0%
CTAGACATTCACATTGGCGT+TGG - chr4_2:2029577-2029596 None:intergenic 45.0%
ATACCTGAGTGTTCTCTAGC+GGG - chr4_2:2029623-2029642 None:intergenic 45.0%
! CATTGGTACGTGTGGATTGA+TGG - chr4_2:2029650-2029669 None:intergenic 45.0%
TCAATCCACACGTACCAATG+TGG + chr4_2:2029650-2029669 Msa0583470:intron 45.0%
GATCCTCAACTTACAGCTAG+AGG + chr4_2:2029672-2029691 Msa0583470:intron 45.0%
! CATAACACCGTGGGTTATTG+TGG - chr4_2:2029741-2029760 None:intergenic 45.0%
CACATAGGAACATAACACCG+TGG - chr4_2:2029751-2029770 None:intergenic 45.0%
TGTGTAGCAATAAATGCGGG+AGG + chr4_2:2029767-2029786 Msa0583470:intron 45.0%
TAGCAATAAATGCGGGAGGA+AGG + chr4_2:2029771-2029790 Msa0583470:intron 45.0%
CAAATTGGATGCAGGGAATG+TGG + chr4_2:2029874-2029893 Msa0583470:CDS 45.0%
AGGACGTTAGGGTAATGACA+AGG + chr4_2:2029900-2029919 Msa0583470:CDS 45.0%
GGTAATGACAAGGAAGAGTG+TGG + chr4_2:2029910-2029929 Msa0583470:CDS 45.0%
! AAGGAAGAGTGTGGATGATC+CGG + chr4_2:2029919-2029938 Msa0583470:CDS 45.0%
TTAGTGCAGCAACCTCAGTT+TGG + chr4_2:2029963-2029982 Msa0583470:CDS 45.0%
TTCTAAGCTTCTCGTTGCGA+AGG - chr4_2:2030021-2030040 None:intergenic 45.0%
GAATGGGACATACTCTCCAA+TGG + chr4_2:2030043-2030062 Msa0583470:CDS 45.0%
ATGTGAGCCATCTCTTGCAT+TGG - chr4_2:2030073-2030092 None:intergenic 45.0%
ATTGCCAAAGGACATGACCA+TGG + chr4_2:2030091-2030110 Msa0583470:CDS 45.0%
TCTTGCTAACTAGTGCCTTC+AGG + chr4_2:2030524-2030543 Msa0583470:intron 45.0%
AACTAGTGCCTTCAGGACAA+TGG + chr4_2:2030531-2030550 Msa0583470:intron 45.0%
TGCCTTCAGGACAATGGTTA+AGG + chr4_2:2030537-2030556 Msa0583470:intron 45.0%
CGCGTAGTCATTGGATGAAA+AGG + chr4_2:2030869-2030888 Msa0583470:intron 45.0%
AGAAACAAGCACAGACGCAT+CGG + chr4_2:2031421-2031440 Msa0583470:CDS 45.0%
TGCATTGCGGGAATATCTAC+CGG - chr4_2:2031467-2031486 None:intergenic 45.0%
TTATGTTGCGCTTCTTCCGT+CGG + chr4_2:2031514-2031533 Msa0583470:CDS 45.0%
GCTATGTCCATCTGGTAACA+CGG - chr4_2:2031546-2031565 None:intergenic 45.0%
TTACCAGATGGACATAGCGA+CGG + chr4_2:2031548-2031567 Msa0583470:CDS 45.0%
!! AGCGAGTGGATCACTTTTGA+CGG + chr4_2:2031604-2031623 Msa0583470:CDS 45.0%
ACTTGTGAATAGCCTTCCGA+CGG + chr4_2:2031640-2031659 Msa0583470:CDS 45.0%
ACCACCATTATCACGACTTC+TGG + chr4_2:2031882-2031901 Msa0583470:three_prime_UTR 45.0%
!! TCCAGAAGTCGTGATAATGG+TGG - chr4_2:2031886-2031905 None:intergenic 45.0%
!! ATTAAAATAATATTCTTATA+GGG - chr4_2:2028566-2028585 None:intergenic 5.0%
!! AATTAAAATAATATTCTTAT+AGG - chr4_2:2028567-2028586 None:intergenic 5.0%
GACCGAGTTTGTACACTTGC+CGG + chr4_2:2026044-2026063 Msa0583470:CDS 50.0%
TGCCGGCAAGTGTACAAACT+CGG - chr4_2:2026049-2026068 None:intergenic 50.0%
ACACTTGCCGGCAAGTTTCT+AGG + chr4_2:2026056-2026075 Msa0583470:CDS 50.0%
!! TCCATTGGTTCCTGTTCGTG+AGG + chr4_2:2027246-2027265 Msa0583470:CDS 50.0%
ACCTCACGAACAGGAACCAA+TGG - chr4_2:2027250-2027269 None:intergenic 50.0%
TTGCAAGCAGCATGCAGAAG+GGG + chr4_2:2027285-2027304 Msa0583470:CDS 50.0%
ACCATCAGAGAAGCTTCAGC+TGG + chr4_2:2027337-2027356 Msa0583470:CDS 50.0%
ACCAGCTGAAGCTTCTCTGA+TGG - chr4_2:2027341-2027360 None:intergenic 50.0%
AACTGTAGGAGGCTTCCTTC+TGG + chr4_2:2027376-2027395 Msa0583470:CDS 50.0%
TAGAACCACTCTCCCAGTGA+TGG + chr4_2:2028076-2028095 Msa0583470:intron 50.0%
! AATCAATGATCCGGGAGCAC+CGG + chr4_2:2028248-2028267 Msa0583470:intron 50.0%
GTAATGTTAACCGGTGCTCC+CGG - chr4_2:2028261-2028280 None:intergenic 50.0%
! GTTGACTCAACGACAGACCA+AGG - chr4_2:2028867-2028886 None:intergenic 50.0%
TGTCGTTGAGTCAACTTGCC+AGG + chr4_2:2028872-2028891 Msa0583470:intron 50.0%
TATGATGCAGGTGACATGGG+TGG + chr4_2:2029454-2029473 Msa0583470:intron 50.0%
GGTGGAGCATGCAGAATATG+AGG + chr4_2:2029472-2029491 Msa0583470:CDS 50.0%
ACCCTTGCTAAGCTTAGGCA+TGG + chr4_2:2029520-2029539 Msa0583470:CDS 50.0%
CCCATGCCTAAGCTTAGCAA+GGG - chr4_2:2029524-2029543 None:intergenic 50.0%
CCCTTGCTAAGCTTAGGCAT+GGG + chr4_2:2029521-2029540 Msa0583470:CDS 50.0%
ACCCATGCCTAAGCTTAGCA+AGG - chr4_2:2029525-2029544 None:intergenic 50.0%
! GACATTCACATTGGCGTTGG+AGG - chr4_2:2029574-2029593 None:intergenic 50.0%
TACCTGAGTGTTCTCTAGCG+GGG - chr4_2:2029622-2029641 None:intergenic 50.0%
AGGATCCACATTGGTACGTG+TGG - chr4_2:2029658-2029677 None:intergenic 50.0%
! AGGAAGAGTGTGGATGATCC+GGG + chr4_2:2029920-2029939 Msa0583470:CDS 50.0%
TGGGACATACTCTCCAATGG+TGG + chr4_2:2030046-2030065 Msa0583470:CDS 50.0%
CTCTTGCATTGGACCACCAT+TGG - chr4_2:2030062-2030081 None:intergenic 50.0%
TGGTGGTCCAATGCAAGAGA+TGG + chr4_2:2030063-2030082 Msa0583470:CDS 50.0%
GAGATGGCTCACATTGCCAA+AGG + chr4_2:2030079-2030098 Msa0583470:CDS 50.0%
GTTGCCATGGTCATGTCCTT+TGG - chr4_2:2030098-2030117 None:intergenic 50.0%
GCATACACTAGCTCGTAGGA+GGG - chr4_2:2030128-2030147 None:intergenic 50.0%
TGCATACACTAGCTCGTAGG+AGG - chr4_2:2030129-2030148 None:intergenic 50.0%
GAAACAAGCACAGACGCATC+GGG + chr4_2:2031422-2031441 Msa0583470:CDS 50.0%
AAACAAGCACAGACGCATCG+GGG + chr4_2:2031423-2031442 Msa0583470:CDS 50.0%
TATGTTGCGCTTCTTCCGTC+GGG + chr4_2:2031515-2031534 Msa0583470:CDS 50.0%
TACCAGATGGACATAGCGAC+GGG + chr4_2:2031549-2031568 Msa0583470:CDS 50.0%
GGGAGTGGTAATCACGATGA+CGG + chr4_2:2031569-2031588 Msa0583470:CDS 50.0%
GGAGTGGTAATCACGATGAC+GGG + chr4_2:2031570-2031589 Msa0583470:CDS 50.0%
AAAGCTCACGGTGGAATCAG+TGG + chr4_2:2031664-2031683 Msa0583470:CDS 50.0%
CACGGTGGAATCAGTGGAAA+CGG + chr4_2:2031670-2031689 Msa0583470:CDS 50.0%
TGGACGGCCTAGAAACTTGC+CGG - chr4_2:2026066-2026085 None:intergenic 55.0%
AGCAGCATGCAGAAGGGGTA+TGG + chr4_2:2027290-2027309 Msa0583470:CDS 55.0%
! GCAGCATGCAGAAGGGGTAT+GGG + chr4_2:2027291-2027310 Msa0583470:CDS 55.0%
! GAGGCTTCCTTCTGGTTGTG+TGG + chr4_2:2027384-2027403 Msa0583470:CDS 55.0%
!! TGGGTTTTGGCGCACAACGT+TGG + chr4_2:2029540-2029559 Msa0583470:CDS 55.0%
!! GGGTTTTGGCGCACAACGTT+GGG + chr4_2:2029541-2029560 Msa0583470:CDS 55.0%
TGCCGGAGTTTGTGCATCGA+CGG + chr4_2:2029838-2029857 Msa0583470:CDS 55.0%
CACCGTCGATGCACAAACTC+CGG - chr4_2:2029843-2029862 None:intergenic 55.0%
! GTGCATCGACGGTGCACAAA+TGG + chr4_2:2029849-2029868 Msa0583470:CDS 55.0%
GAATGTGGGCGAGGACGTTA+GGG + chr4_2:2029889-2029908 Msa0583470:CDS 55.0%
GCTGCACTAAGCACAATCCC+CGG - chr4_2:2029953-2029972 None:intergenic 55.0%
TGAAGCGGGTAGCCAAACTG+AGG - chr4_2:2029978-2029997 None:intergenic 55.0%
GGTTTCGCCGTGTTACCAGA+TGG + chr4_2:2031536-2031555 Msa0583470:CDS 55.0%
! TGCAGAAGGGGTATGGGCAG+TGG + chr4_2:2027297-2027316 Msa0583470:CDS 60.0%
GGGAACCATCACTGGGAGAG+TGG - chr4_2:2028084-2028103 None:intergenic 60.0%
!! GAGAGGAAGCATCCTAGCCC+AGG - chr4_2:2028314-2028333 None:intergenic 60.0%
CTCCCCGCTAGAGAACACTC+AGG + chr4_2:2029617-2029636 Msa0583470:CDS 60.0%
GGAATGTGGGCGAGGACGTT+AGG + chr4_2:2029888-2029907 Msa0583470:CDS 60.0%
GCACTAAGCACAATCCCCGG+TGG - chr4_2:2029950-2029969 None:intergenic 60.0%
GGAGGGAGACACAGTTGCCA+TGG - chr4_2:2030111-2030130 None:intergenic 60.0%
!! GTCGCTTGTTGTGTACGCGC+CGG + chr4_2:2031445-2031464 Msa0583470:CDS 60.0%
GGTAACACGGCGAAACCCGA+CGG - chr4_2:2031533-2031552 None:intergenic 60.0%
CTCCCGTCGCTATGTCCATC+TGG - chr4_2:2031554-2031573 None:intergenic 60.0%
GATGGACATAGCGACGGGAG+TGG + chr4_2:2031554-2031573 Msa0583470:CDS 60.0%
!! ATCACGATGACGGGTCGCAG+CGG + chr4_2:2031579-2031598 Msa0583470:CDS 60.0%
CCTTCCGACGGCAAAGCTCA+CGG + chr4_2:2031652-2031671 Msa0583470:CDS 60.0%
TCCACCGTGAGCTTTGCCGT+CGG - chr4_2:2031659-2031678 None:intergenic 60.0%
GGATGCAGGGAATGTGGGCG+AGG + chr4_2:2029880-2029899 Msa0583470:CDS 65.0%
GGATGATCCGGGTGAGCCAC+CGG + chr4_2:2029931-2029950 Msa0583470:CDS 65.0%
GATGATCCGGGTGAGCCACC+GGG + chr4_2:2029932-2029951 Msa0583470:CDS 65.0%
ATGATCCGGGTGAGCCACCG+GGG + chr4_2:2029933-2029952 Msa0583470:CDS 65.0%
ACAATCCCCGGTGGCTCACC+CGG - chr4_2:2029941-2029960 None:intergenic 65.0%
CCGTGAGCTTTGCCGTCGGA+AGG - chr4_2:2031655-2031674 None:intergenic 65.0%
TCCGACGGCAAAGCTCACGG+TGG + chr4_2:2031655-2031674 Msa0583470:CDS 65.0%
GGGTCGCAGCGGAGAGCGAG+TGG + chr4_2:2031590-2031609 Msa0583470:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 2024795 2031948 2024795 ID=Msa0583470;Name=Msa0583470
chr4_2 mRNA 2024795 2031948 2024795 ID=Msa0583470-mRNA-1;Parent=Msa0583470;Name=Msa0583470-mRNA-1;_AED=0.13;_eAED=0.13;_QI=174|1|1|1|1|1|9|194|778
chr4_2 exon 2024795 2025058 2024795 ID=Msa0583470-mRNA-1:exon:555;Parent=Msa0583470-mRNA-1
chr4_2 exon 2025162 2025394 2025162 ID=Msa0583470-mRNA-1:exon:556;Parent=Msa0583470-mRNA-1
chr4_2 exon 2025488 2025605 2025488 ID=Msa0583470-mRNA-1:exon:557;Parent=Msa0583470-mRNA-1
chr4_2 exon 2025852 2026514 2025852 ID=Msa0583470-mRNA-1:exon:558;Parent=Msa0583470-mRNA-1
chr4_2 exon 2026976 2027077 2026976 ID=Msa0583470-mRNA-1:exon:559;Parent=Msa0583470-mRNA-1
chr4_2 exon 2027220 2027435 2027220 ID=Msa0583470-mRNA-1:exon:560;Parent=Msa0583470-mRNA-1
chr4_2 exon 2029464 2029638 2029464 ID=Msa0583470-mRNA-1:exon:561;Parent=Msa0583470-mRNA-1
chr4_2 exon 2029774 2030141 2029774 ID=Msa0583470-mRNA-1:exon:562;Parent=Msa0583470-mRNA-1
chr4_2 exon 2031383 2031948 2031383 ID=Msa0583470-mRNA-1:exon:563;Parent=Msa0583470-mRNA-1
chr4_2 five_prime_UTR 2024795 2024968 2024795 ID=Msa0583470-mRNA-1:five_prime_utr;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2024969 2025058 2024969 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2025162 2025394 2025162 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2025488 2025605 2025488 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2025852 2026514 2025852 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2026976 2027077 2026976 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2027220 2027435 2027220 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2029464 2029638 2029464 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2029774 2030141 2029774 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 CDS 2031383 2031754 2031383 ID=Msa0583470-mRNA-1:cds;Parent=Msa0583470-mRNA-1
chr4_2 three_prime_UTR 2031755 2031948 2031755 ID=Msa0583470-mRNA-1:three_prime_utr;Parent=Msa0583470-mRNA-1
Gene Sequence

>Msa0583470

ATGCCTTCTAGTGCAATCTCACAACCTCGTTTATCAACTCCTACTTTGGTTAAATCCATGTTCAACTCATCTGGTTTATCTTTAGCACTTCAAACAAATATAGAAGCACAAGGTGGTGATATGAAGAGATTAATGGCAGAAAATTTCCATCAAACAAATAATGGTTTGAGAAGGAATAGAGAAGAAGAAGAACATGAAAGCTGCAGATCTGGTAGTGATAACATGGATGGTATTTCTGGTGATGATATTGATGCTGCCGACAATCCGCCAAGAAAAAAACGTTATCACCGACACACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCACCCTGATGAAAAACAAAGACTTGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTCAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAACGTCACGAGAATTCACTACTTAGGCAAGCAAATGATAAATTAAGAGCTGAGAACATGTCAATAAGAGAAGCAATGAGGAATCCAATGTGTTCAAATTGTGGAGGACCAGCAATTATTAGTGAAATTTCACTTGAAGAACAACATCTAAGAATTGAGAATGCAAGATTAAAAGATGAATTAGACCGAGTTTGTACACTTGCCGGCAAGTTTCTAGGCCGTCCAATTACGTCGTTACCAAACTCGAGTTTAGAAATTGGTTTTAATGGTTTGAACAATACTTTGCCTTCAACAATGCCTTTAGGTCAAGATTTTGGCATGGTGTCAATGTCACCACCTTCAATTACAAGAGGAACAAATATGGTAACAAATACTAATAGTAATGGTTTTGATAGACCAATGGAGAGGTCTATGTTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTAGTGAAGATGGCACAAACTAATGAGCCTCTTTGGATTAGAAGTGTTGAAAGTGGAAAAGAAATTTTTAATCATGAGGAATATACAAGGATTATTAGTACTCCTTGTATTGGTTTAAAACCAAATGGTTTTGTTTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGATTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAGAAGCTCCACAACTGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGTGCTCTACAACTGATGCAAGCTGAACTTCAAGTACTTTCTCCATTGGTTCCTGTTCGTGAGGTGAGTTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCCATAGATACCATCAGAGAAGCTTCAGCTGGTGCACCCACTTTTCTTAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTTCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGAGGAAAGCCAAGTTCACCAGCTCTATAGACCCTTGCTAAGCTTAGGCATGGGTTTTGGCGCACAACGTTGGGTTGCAACCCTCCAACGCCAATGTGAATGTCTAGCCATCTTAATGTCATCATCACTCCCCGCTAGAGAACACTCAGCAATAAATGCGGGAGGAAGGCGTAGCATGCTAAAGCTAGCGCACCGAATGACAAACAACTTTTGTGCCGGAGTTTGTGCATCGACGGTGCACAAATGGAACAAATTGGATGCAGGGAATGTGGGCGAGGACGTTAGGGTAATGACAAGGAAGAGTGTGGATGATCCGGGTGAGCCACCGGGGATTGTGCTTAGTGCAGCAACCTCAGTTTGGCTACCCGCTTCACCACAAAAAGTCTTTGATTTCCTTCGCAACGAGAAGCTTAGAAGTGAATGGGACATACTCTCCAATGGTGGTCCAATGCAAGAGATGGCTCACATTGCCAAAGGACATGACCATGGCAACTGTGTCTCCCTCCTACGAGCTAGTGCTATTAATTCAAGTCAAAGTAGCATGTTGATTCTACAAGAAACAAGCACAGACGCATCGGGGTCGCTTGTTGTGTACGCGCCGGTAGATATTCCCGCAATGCATGTAGTAATGAACGGCGGCGATTCAGCTTATGTTGCGCTTCTTCCGTCGGGTTTCGCCGTGTTACCAGATGGACATAGCGACGGGAGTGGTAATCACGATGACGGGTCGCAGCGGAGAGCGAGTGGATCACTTTTGACGGTAGCATTCCAGATACTTGTGAATAGCCTTCCGACGGCAAAGCTCACGGTGGAATCAGTGGAAACGGTGAACAATCTCATTTCATGTACTATTCAAAAGATAAAAGTAGCACTTCAATGTGAGAGTTAA
Protein sequence

>Msa0583470

MPSSAISQPRLSTPTLVKSMFNSSGLSLALQTNIEAQGGDMKRLMAENFHQTNNGLRRNREEEEHESCRSGSDNMDGISGDDIDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQANDKLRAENMSIREAMRNPMCSNCGGPAIISEISLEEQHLRIENARLKDELDRVCTLAGKFLGRPITSLPNSSLEIGFNGLNNTLPSTMPLGQDFGMVSMSPPSITRGTNMVTNTNSNGFDRPMERSMFLELALAAMDELVKMAQTNEPLWIRSVESGKEIFNHEEYTRIISTPCIGLKPNGFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIARSSTTEVISSGINGTRNGALQLMQAELQVLSPLVPVREVSFLRFCKQHAEGVWAVVDVSIDTIREASAGAPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQVHQLYRPLLSLGMGFGAQRWVATLQRQCECLAILMSSSLPAREHSAINAGGRRSMLKLAHRMTNNFCAGVCASTVHKWNKLDAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPASPQKVFDFLRNEKLRSEWDILSNGGPMQEMAHIAKGHDHGNCVSLLRASAINSSQSSMLILQETSTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVLPDGHSDGSGNHDDGSQRRASGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKVALQCES*