Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584900 | GAU28582.1 | 73.636 | 110 | 4 | 1 | 1 | 85 | 1 | 110 | 8.73e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584900 | sp|Q38859|NRPBB_ARATH | 67.925 | 106 | 9 | 1 | 1 | 81 | 1 | 106 | 3.00e-43 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0584720 | Msa0584900 | 0.948929 | 3.545890e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584900 | MtrunA17_Chr4g0019391 | 72.727 | 110 | 5 | 1 | 1 | 85 | 1 | 110 | 1.99e-49 | 154 |
| Msa0584900 | MtrunA17_Chr6g0449301 | 71.818 | 110 | 6 | 1 | 1 | 85 | 1 | 110 | 3.28e-48 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584900 | AT3G52090.1 | 67.925 | 106 | 9 | 1 | 1 | 81 | 1 | 106 | 3.05e-44 | 141 |
| Msa0584900 | AT3G52090.2 | 88.235 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 4.51e-28 | 101 |
Find 50 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTATCAAGATCATTAA+TGG | 0.184342 | 4_2:-5116880 | None:intergenic |
| TATCAACGAAAATGTTTAAA+AGG | 0.207083 | 4_2:+5118186 | Msa0584900:three_prime_UTR |
| CATTACTAGTAGCCTGTCTT+TGG | 0.279210 | 4_2:-5118365 | None:intergenic |
| AAACGTTGTTTACATGCATT+TGG | 0.294875 | 4_2:+5117196 | Msa0584900:CDS |
| CTATTTAAATTCCATCTAAC+TGG | 0.298156 | 4_2:-5118137 | None:intergenic |
| GACACAACTAAACCAGTATT+TGG | 0.333141 | 4_2:-5118234 | None:intergenic |
| AGAACATCAAATTGATAGTC+TGG | 0.359910 | 4_2:+5117246 | Msa0584900:CDS |
| GTATTGAAACTACCAAATAC+TGG | 0.372719 | 4_2:+5118222 | Msa0584900:three_prime_UTR |
| TAGTCTGGATTGGATGTGTT+TGG | 0.388311 | 4_2:+5117261 | Msa0584900:CDS |
| AGCAGATCACTCCAGTTAGA+TGG | 0.397966 | 4_2:+5118126 | Msa0584900:exon |
| CTAGTAGCCTGTCTTTGGTT+CGG | 0.405339 | 4_2:-5118360 | None:intergenic |
| GTTTGGATGATTTGAATAGA+AGG | 0.411702 | 4_2:+5117278 | Msa0584900:CDS |
| TAAACAAACACATGCATAAC+CGG | 0.419483 | 4_2:-5118324 | None:intergenic |
| AACGTTGTTTACATGCATTT+GGG | 0.423789 | 4_2:+5117197 | Msa0584900:CDS |
| TTAACTCTGCCAAGAGCATC+TGG | 0.426290 | 4_2:+5118291 | Msa0584900:three_prime_UTR |
| ATGCATTTGGGAATAGTTTG+TGG | 0.428928 | 4_2:+5117209 | Msa0584900:CDS |
| TACCTCAAAACCGCTCTTCA+AGG | 0.435176 | 4_2:-5116910 | None:intergenic |
| TGTGTGATCTTCTCTTTCAA+TGG | 0.448451 | 4_2:-5115805 | None:intergenic |
| AGCATCTGGTGGTATGTAAC+CGG | 0.466653 | 4_2:+5118305 | Msa0584900:three_prime_UTR |
| ATCAACGAAAATGTTTAAAA+GGG | 0.480523 | 4_2:+5118187 | Msa0584900:three_prime_UTR |
| GTCCATTAATGATCTTGATA+AGG | 0.483700 | 4_2:+5116878 | Msa0584900:CDS |
| ATCAAATTGATAGTCTGGAT+TGG | 0.484595 | 4_2:+5117251 | Msa0584900:CDS |
| ATATCCACCTTGACGGTTGA+AGG | 0.486636 | 4_2:-5118092 | None:intergenic |
| TATCAAGATCATTAATGGAC+TGG | 0.497738 | 4_2:-5116875 | None:intergenic |
| TAGCCAGTCTTCACCAATGC+AGG | 0.510252 | 4_2:+5116845 | Msa0584900:CDS |
| TGGGAATAGTTTGTGGAGGA+CGG | 0.516604 | 4_2:+5117216 | Msa0584900:CDS |
| AACGAAAATGTTTAAAAGGG+AGG | 0.517589 | 4_2:+5118190 | Msa0584900:three_prime_UTR |
| GGGAATAGTTTGTGGAGGAC+GGG | 0.517826 | 4_2:+5117217 | Msa0584900:CDS |
| GACGAAACGCTCGTAACGAT+CGG | 0.522382 | 4_2:-5115627 | None:intergenic |
| TTTAAAGGGTTTCGTACGAG+AGG | 0.523969 | 4_2:+5115751 | Msa0584900:intron |
| GAAAGAGAAGATCACACAAT+CGG | 0.526016 | 4_2:+5115810 | Msa0584900:CDS |
| ACTCACAATATCCACCTTGA+CGG | 0.529058 | 4_2:-5118099 | None:intergenic |
| ACGAAACGCTCGTAACGATC+GGG | 0.531962 | 4_2:-5115626 | None:intergenic |
| TGCTCTTGGCAGAGTTAACA+TGG | 0.541755 | 4_2:-5118286 | None:intergenic |
| TAGAAAACAGAGAGAGCAAA+GGG | 0.555899 | 4_2:+5115580 | Msa0584900:five_prime_UTR |
| GAGCGTTTCGTCGTTCCCGA+AGG | 0.559225 | 4_2:+5115638 | Msa0584900:CDS |
| TACATACCACCAGATGCTCT+TGG | 0.561678 | 4_2:-5118300 | None:intergenic |
| ACTGGTTTAGTTGTGTCACA+TGG | 0.563312 | 4_2:+5118240 | Msa0584900:three_prime_UTR |
| ATGCCTGCATTGGTGAAGAC+TGG | 0.568041 | 4_2:-5116848 | None:intergenic |
| TTAAAGGGTTTCGTACGAGA+GGG | 0.578031 | 4_2:+5115752 | Msa0584900:intron |
| CATTTGGGAATAGTTTGTGG+AGG | 0.618905 | 4_2:+5117212 | Msa0584900:CDS |
| GACTGGTTATATGCCTGCAT+TGG | 0.619640 | 4_2:-5116858 | None:intergenic |
| GTAGAAAACAGAGAGAGCAA+AGG | 0.625950 | 4_2:+5115579 | Msa0584900:five_prime_UTR |
| CTATTGACCTTCAACCGTCA+AGG | 0.626682 | 4_2:+5118085 | Msa0584900:CDS |
| GAACTTGATACCTTGAAGAG+CGG | 0.632528 | 4_2:+5116900 | Msa0584900:CDS |
| CTCTCAGACTGTGAGAAGAG+TGG | 0.644057 | 4_2:+5115557 | None:intergenic |
| CATTGGTGAAGACTGGCTAG+TGG | 0.648304 | 4_2:-5116841 | None:intergenic |
| TGGGTAGTACATACATGCGA+AGG | 0.665982 | 4_2:-5115839 | None:intergenic |
| TTGACCTTCAACCGTCAAGG+TGG | 0.682456 | 4_2:+5118088 | Msa0584900:CDS |
| ACTCTGCCAAGAGCATCTGG+TGG | 0.724915 | 4_2:+5118294 | Msa0584900:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTAATTTTTAA+AGG | + | chr4_2:5115736-5115755 | Msa0584900:intron | 0.0% |
| !!! | ATTTTTTTTTAATTTTTAAA+GGG | + | chr4_2:5115737-5115756 | Msa0584900:intron | 0.0% |
| !!! | TTTTTGATTTTTTTTTTTGT+TGG | + | chr4_2:5115903-5115922 | Msa0584900:intron | 10.0% |
| !! | AAAAAAAATACAACATAAAT+AGG | - | chr4_2:5116719-5116738 | None:intergenic | 10.0% |
| !! | ATATATAATACGAAAATAGT+TGG | - | chr4_2:5116164-5116183 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTTGTTAGTAA+TGG | - | chr4_2:5118029-5118048 | None:intergenic | 15.0% |
| !! | TTGAGAAAAAAAAGAGAATA+GGG | - | chr4_2:5115718-5115737 | None:intergenic | 20.0% |
| !! | ATTGAGAAAAAAAAGAGAAT+AGG | - | chr4_2:5115719-5115738 | None:intergenic | 20.0% |
| !!! | GTTTTGATTAAAATGAAAGT+GGG | - | chr4_2:5115861-5115880 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGGTTTGTATTT+TGG | + | chr4_2:5115915-5115934 | Msa0584900:intron | 20.0% |
| !! | TTCAGTACAAAATTATCATT+AGG | + | chr4_2:5116003-5116022 | Msa0584900:intron | 20.0% |
| !! | TCAGTACAAAATTATCATTA+GGG | + | chr4_2:5116004-5116023 | Msa0584900:intron | 20.0% |
| !!! | AAAGAGGTTATAAACTATTT+TGG | + | chr4_2:5116243-5116262 | Msa0584900:intron | 20.0% |
| !! | ATAGATTTATTTGGAGAAAA+TGG | + | chr4_2:5116341-5116360 | Msa0584900:intron | 20.0% |
| !!! | TAAATTAACTGAATTGGTTT+CGG | + | chr4_2:5116411-5116430 | Msa0584900:intron | 20.0% |
| !! | GGTTATGTTAAAACAAAAAA+AGG | - | chr4_2:5116448-5116467 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTTTCTTAAAGT+AGG | + | chr4_2:5116733-5116752 | Msa0584900:intron | 20.0% |
| !!! | ATTTTTATCTGTATGTGAAT+TGG | + | chr4_2:5116774-5116793 | Msa0584900:intron | 20.0% |
| !!! | TTTTTATCTGTATGTGAATT+GGG | + | chr4_2:5116775-5116794 | Msa0584900:intron | 20.0% |
| !!! | AGAGTACTATCAATAAAAAA+GGG | - | chr4_2:5117804-5117823 | None:intergenic | 20.0% |
| !!! | AAGAGTACTATCAATAAAAA+AGG | - | chr4_2:5117805-5117824 | None:intergenic | 20.0% |
| !!! | CGCTTTTTATTATTTTGAAA+TGG | - | chr4_2:5117830-5117849 | None:intergenic | 20.0% |
| !! | AAATTAAAAACTTCAATTGC+AGG | + | chr4_2:5118037-5118056 | Msa0584900:intron | 20.0% |
| !! | TATCAACGAAAATGTTTAAA+AGG | + | chr4_2:5118186-5118205 | Msa0584900:three_prime_UTR | 20.0% |
| !! | ATCAACGAAAATGTTTAAAA+GGG | + | chr4_2:5118187-5118206 | Msa0584900:three_prime_UTR | 20.0% |
| !! | AAGAATAGAGAGATACTTTT+TGG | - | chr4_2:5115666-5115685 | None:intergenic | 25.0% |
| !!! | GGTTTTGATTAAAATGAAAG+TGG | - | chr4_2:5115862-5115881 | None:intergenic | 25.0% |
| !!! | GTTTGTATTTTGGTTTTTTC+AGG | + | chr4_2:5115925-5115944 | Msa0584900:intron | 25.0% |
| ! | ATCCAGCAAATAAAACATTA+GGG | - | chr4_2:5115965-5115984 | None:intergenic | 25.0% |
| ! | TATCCAGCAAATAAAACATT+AGG | - | chr4_2:5115966-5115985 | None:intergenic | 25.0% |
| !! | ATGATAATTTTGTACTGAAG+AGG | - | chr4_2:5116002-5116021 | None:intergenic | 25.0% |
| ! | TCGAAAATAGCTTATGATAA+TGG | - | chr4_2:5116190-5116209 | None:intergenic | 25.0% |
| ! | AAATAAATCTATAGCCTGTT+TGG | - | chr4_2:5116333-5116352 | None:intergenic | 25.0% |
| ! | AAACAGGCTATAGATTTATT+TGG | + | chr4_2:5116332-5116351 | Msa0584900:intron | 25.0% |
| ! | CATGTGTAAATTAACTGAAT+TGG | + | chr4_2:5116405-5116424 | Msa0584900:intron | 25.0% |
| !! | TTAACTCCTACTTTAAGAAA+AGG | - | chr4_2:5116742-5116761 | None:intergenic | 25.0% |
| ! | TTCCTTATCAAGATCATTAA+TGG | - | chr4_2:5116883-5116902 | None:intergenic | 25.0% |
| ! | GAAAGGAGAGTAAATAAATA+TGG | - | chr4_2:5116955-5116974 | None:intergenic | 25.0% |
| ! | TGTATAAGAATTGCTAAGAA+AGG | - | chr4_2:5116972-5116991 | None:intergenic | 25.0% |
| ! | GCAAGTAAAGATATTCAAAA+GGG | - | chr4_2:5117055-5117074 | None:intergenic | 25.0% |
| ! | TGCAAGTAAAGATATTCAAA+AGG | - | chr4_2:5117056-5117075 | None:intergenic | 25.0% |
| !!! | AAGTAAGAAGTTGATATTTG+TGG | + | chr4_2:5117309-5117328 | Msa0584900:intron | 25.0% |
| ! | TTGGTTGAATGTAAAATCAA+AGG | + | chr4_2:5117337-5117356 | Msa0584900:intron | 25.0% |
| ! | TGGTTGAATGTAAAATCAAA+GGG | + | chr4_2:5117338-5117357 | Msa0584900:intron | 25.0% |
| ! | TAATTACGATCTAATCATGA+CGG | + | chr4_2:5117733-5117752 | Msa0584900:intron | 25.0% |
| ! | GAAGAACATATGAAAACAAA+AGG | - | chr4_2:5117860-5117879 | None:intergenic | 25.0% |
| !! | TTTGAAATGTACATACATAC+TGG | + | chr4_2:5117930-5117949 | Msa0584900:intron | 25.0% |
| ! | ATACTAATTAGAATCCATGA+AGG | - | chr4_2:5117986-5118005 | None:intergenic | 25.0% |
| ! | CTATTTAAATTCCATCTAAC+TGG | - | chr4_2:5118140-5118159 | None:intergenic | 25.0% |
| AAAAAGAGAATAGGGAAAGA+AGG | - | chr4_2:5115710-5115729 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr4_2:5116316-5116335 | Msa0584900:intron | 30.0% | |
| ATGTTGAGCTTATTAATCGT+TGG | + | chr4_2:5116367-5116386 | Msa0584900:intron | 30.0% | |
| ACTTTATCATAGCAATGGAT+TGG | + | chr4_2:5116470-5116489 | Msa0584900:intron | 30.0% | |
| ! | TATCAAGATCATTAATGGAC+TGG | - | chr4_2:5116878-5116897 | None:intergenic | 30.0% |
| GTCCATTAATGATCTTGATA+AGG | + | chr4_2:5116878-5116897 | Msa0584900:CDS | 30.0% | |
| ATGGACAATGTAAATAGAAG+CGG | - | chr4_2:5116936-5116955 | None:intergenic | 30.0% | |
| ! | ATTAGATTTGTCATTTGACC+CGG | + | chr4_2:5117111-5117130 | Msa0584900:intron | 30.0% |
| AAACGTTGTTTACATGCATT+TGG | + | chr4_2:5117196-5117215 | Msa0584900:CDS | 30.0% | |
| AACGTTGTTTACATGCATTT+GGG | + | chr4_2:5117197-5117216 | Msa0584900:CDS | 30.0% | |
| ! | AGAACATCAAATTGATAGTC+TGG | + | chr4_2:5117246-5117265 | Msa0584900:CDS | 30.0% |
| ! | ATCAAATTGATAGTCTGGAT+TGG | + | chr4_2:5117251-5117270 | Msa0584900:CDS | 30.0% |
| GTTTGGATGATTTGAATAGA+AGG | + | chr4_2:5117278-5117297 | Msa0584900:CDS | 30.0% | |
| !! | TAAGAAGTTGATATTTGTGG+AGG | + | chr4_2:5117312-5117331 | Msa0584900:intron | 30.0% |
| TTTAATCTGATACTGCACAT+TGG | + | chr4_2:5117612-5117631 | Msa0584900:intron | 30.0% | |
| TTCTTCTGTACCATTTGTAT+GGG | + | chr4_2:5117703-5117722 | Msa0584900:intron | 30.0% | |
| AATTACGATCTAATCATGAC+GGG | + | chr4_2:5117734-5117753 | Msa0584900:intron | 30.0% | |
| !! | CTATGACTGTATTTTTGTGT+TGG | + | chr4_2:5117879-5117898 | Msa0584900:intron | 30.0% |
| ! | CATACTGGTTATTTATCGAT+TGG | + | chr4_2:5117945-5117964 | Msa0584900:intron | 30.0% |
| TTAAAAACTTCAATTGCAGG+CGG | + | chr4_2:5118040-5118059 | Msa0584900:intron | 30.0% | |
| AACGAAAATGTTTAAAAGGG+AGG | + | chr4_2:5118190-5118209 | Msa0584900:three_prime_UTR | 30.0% | |
| GTATTGAAACTACCAAATAC+TGG | + | chr4_2:5118222-5118241 | Msa0584900:three_prime_UTR | 30.0% | |
| TAAACAAACACATGCATAAC+CGG | - | chr4_2:5118327-5118346 | None:intergenic | 30.0% | |
| TAGAAAACAGAGAGAGCAAA+GGG | + | chr4_2:5115580-5115599 | Msa0584900:five_prime_UTR | 35.0% | |
| TGTGTGATCTTCTCTTTCAA+TGG | - | chr4_2:5115808-5115827 | None:intergenic | 35.0% | |
| GAAAGAGAAGATCACACAAT+CGG | + | chr4_2:5115810-5115829 | Msa0584900:CDS | 35.0% | |
| !!! | GACCCTAATGTTTTATTTGC+TGG | + | chr4_2:5115960-5115979 | Msa0584900:intron | 35.0% |
| ! | ATTTTGTACTGAAGAGGATG+AGG | - | chr4_2:5115996-5116015 | None:intergenic | 35.0% |
| !! | AGCTATTTTCGAGAGCTTTA+TGG | + | chr4_2:5116198-5116217 | Msa0584900:intron | 35.0% |
| ! | TGAATTGGTTTCGGTTCAAA+TGG | + | chr4_2:5116420-5116439 | Msa0584900:intron | 35.0% |
| ACCACACTTTATCATAGCAA+TGG | + | chr4_2:5116465-5116484 | Msa0584900:intron | 35.0% | |
| TCCATTGCTATGATAAAGTG+TGG | - | chr4_2:5116469-5116488 | None:intergenic | 35.0% | |
| ATGCATTTGGGAATAGTTTG+TGG | + | chr4_2:5117209-5117228 | Msa0584900:CDS | 35.0% | |
| GTTGATATTTGTGGAGGAAT+TGG | + | chr4_2:5117318-5117337 | Msa0584900:intron | 35.0% | |
| ! | ATGAATCCATTGGCATGTTT+TGG | + | chr4_2:5117387-5117406 | Msa0584900:intron | 35.0% |
| ! | TTGAGAACTTGAGCTTTGAT+AGG | + | chr4_2:5117475-5117494 | Msa0584900:intron | 35.0% |
| ! | TTTAAGGTGGAAGTGAAATG+TGG | + | chr4_2:5117517-5117536 | Msa0584900:intron | 35.0% |
| TGTGATAGTATGTGAGAAGT+AGG | + | chr4_2:5117548-5117567 | Msa0584900:intron | 35.0% | |
| ACGCACATCAATAACAATGT+TGG | + | chr4_2:5117652-5117671 | Msa0584900:intron | 35.0% | |
| GTTCTTCTGTACCATTTGTA+TGG | + | chr4_2:5117702-5117721 | Msa0584900:intron | 35.0% | |
| ! | ACTGGTTATTTATCGATTGG+TGG | + | chr4_2:5117948-5117967 | Msa0584900:intron | 35.0% |
| ! | CTGGTTATTTATCGATTGGT+GGG | + | chr4_2:5117949-5117968 | Msa0584900:intron | 35.0% |
| ! | TTATTTATCGATTGGTGGGA+GGG | + | chr4_2:5117953-5117972 | Msa0584900:intron | 35.0% |
| ! | GGAGTTGTTGAAGTTTTCAA+AGG | + | chr4_2:5118061-5118080 | Msa0584900:CDS | 35.0% |
| GACACAACTAAACCAGTATT+TGG | - | chr4_2:5118237-5118256 | None:intergenic | 35.0% | |
| !!! | TTTGGTTCGGCTTTTTTAAC+GGG | - | chr4_2:5118350-5118369 | None:intergenic | 35.0% |
| !!! | CTTTGGTTCGGCTTTTTTAA+CGG | - | chr4_2:5118351-5118370 | None:intergenic | 35.0% |
| GTAGAAAACAGAGAGAGCAA+AGG | + | chr4_2:5115579-5115598 | Msa0584900:five_prime_UTR | 40.0% | |
| !!! | AGATACTTTTTGGTGCCTTC+GGG | - | chr4_2:5115656-5115675 | None:intergenic | 40.0% |
| !!! | GAGATACTTTTTGGTGCCTT+CGG | - | chr4_2:5115657-5115676 | None:intergenic | 40.0% |
| TTTAAAGGGTTTCGTACGAG+AGG | + | chr4_2:5115751-5115770 | Msa0584900:intron | 40.0% | |
| TTAAAGGGTTTCGTACGAGA+GGG | + | chr4_2:5115752-5115771 | Msa0584900:intron | 40.0% | |
| ! | GTTACTTCCCATTTGAAGCA+CGG | + | chr4_2:5116034-5116053 | Msa0584900:intron | 40.0% |
| GCTGAAAACAGCTTAGAAAG+AGG | + | chr4_2:5116227-5116246 | Msa0584900:intron | 40.0% | |
| CACTTGTGACAACACTGTTT+GGG | - | chr4_2:5116277-5116296 | None:intergenic | 40.0% | |
| GTTGTATGCATAAGCTACTC+TGG | - | chr4_2:5116581-5116600 | None:intergenic | 40.0% | |
| GAACTTGATACCTTGAAGAG+CGG | + | chr4_2:5116900-5116919 | Msa0584900:CDS | 40.0% | |
| ! | CAAATTTTTCCATGACCACC+GGG | - | chr4_2:5117132-5117151 | None:intergenic | 40.0% |
| ! | CCAAATTTTTCCATGACCAC+CGG | - | chr4_2:5117133-5117152 | None:intergenic | 40.0% |
| !! | GAAAAATTTGGTGTTGACCG+AGG | + | chr4_2:5117142-5117161 | Msa0584900:intron | 40.0% |
| GAGTTATATACGCTGAACCT+CGG | - | chr4_2:5117162-5117181 | None:intergenic | 40.0% | |
| ! | CATTTGGGAATAGTTTGTGG+AGG | + | chr4_2:5117212-5117231 | Msa0584900:CDS | 40.0% |
| ! | TAGTCTGGATTGGATGTGTT+TGG | + | chr4_2:5117261-5117280 | Msa0584900:CDS | 40.0% |
| GTTAAGCCAAAACATGCCAA+TGG | - | chr4_2:5117396-5117415 | None:intergenic | 40.0% | |
| TTAACGCATCAAGTCGTTCT+GGG | + | chr4_2:5117411-5117430 | Msa0584900:intron | 40.0% | |
| ! | CTTGAGCTTTGATAGGAAAG+AGG | + | chr4_2:5117482-5117501 | Msa0584900:intron | 40.0% |
| !!! | GAGGTGAGCGAGTTTTTTTA+AGG | + | chr4_2:5117501-5117520 | Msa0584900:intron | 40.0% |
| !!! | GTGAGCGAGTTTTTTTAAGG+TGG | + | chr4_2:5117504-5117523 | Msa0584900:intron | 40.0% |
| TCTGTGAGTTGTGTTCTCTT+TGG | + | chr4_2:5117586-5117605 | Msa0584900:intron | 40.0% | |
| TTCTGTACCATTTGTATGGG+TGG | + | chr4_2:5117706-5117725 | Msa0584900:intron | 40.0% | |
| TCTGTACCATTTGTATGGGT+GGG | + | chr4_2:5117707-5117726 | Msa0584900:intron | 40.0% | |
| TTAACACCCACCCATACAAA+TGG | - | chr4_2:5117716-5117735 | None:intergenic | 40.0% | |
| TAGTCTCTCAACTAGTGCTT+TGG | + | chr4_2:5117777-5117796 | Msa0584900:intron | 40.0% | |
| ! | GTTATTTATCGATTGGTGGG+AGG | + | chr4_2:5117952-5117971 | Msa0584900:intron | 40.0% |
| ! | TATTTATCGATTGGTGGGAG+GGG | + | chr4_2:5117954-5117973 | Msa0584900:intron | 40.0% |
| ACTCACAATATCCACCTTGA+CGG | - | chr4_2:5118102-5118121 | None:intergenic | 40.0% | |
| ! | ACTGGTTTAGTTGTGTCACA+TGG | + | chr4_2:5118240-5118259 | Msa0584900:three_prime_UTR | 40.0% |
| AAAAAAGCCGAACCAAAGAC+AGG | + | chr4_2:5118353-5118372 | Msa0584900:three_prime_UTR | 40.0% | |
| CATTACTAGTAGCCTGTCTT+TGG | - | chr4_2:5118368-5118387 | None:intergenic | 40.0% | |
| TGGGTAGTACATACATGCGA+AGG | - | chr4_2:5115842-5115861 | None:intergenic | 45.0% | |
| TCTGTGTCCGTGCTTCAAAT+GGG | - | chr4_2:5116044-5116063 | None:intergenic | 45.0% | |
| CCACTTGTGACAACACTGTT+TGG | - | chr4_2:5116278-5116297 | None:intergenic | 45.0% | |
| CCAAACAGTGTTGTCACAAG+TGG | + | chr4_2:5116275-5116294 | Msa0584900:intron | 45.0% | |
| ! | CTGGAGAGCGTGAAAACTTA+TGG | - | chr4_2:5116562-5116581 | None:intergenic | 45.0% |
| ! | GACTGGTTATATGCCTGCAT+TGG | - | chr4_2:5116861-5116880 | None:intergenic | 45.0% |
| ! | TACCTTGAAGAGCGGTTTTG+AGG | + | chr4_2:5116908-5116927 | Msa0584900:CDS | 45.0% |
| TACCTCAAAACCGCTCTTCA+AGG | - | chr4_2:5116913-5116932 | None:intergenic | 45.0% | |
| ! | AGATTTGTCATTTGACCCGG+TGG | + | chr4_2:5117114-5117133 | Msa0584900:intron | 45.0% |
| CCGGTGGTCATGGAAAAATT+TGG | + | chr4_2:5117130-5117149 | Msa0584900:intron | 45.0% | |
| ! | TGGGAATAGTTTGTGGAGGA+CGG | + | chr4_2:5117216-5117235 | Msa0584900:CDS | 45.0% |
| GGATTCATGCTCGTGTGAAA+TGG | - | chr4_2:5117375-5117394 | None:intergenic | 45.0% | |
| TCACACGAGCATGAATCCAT+TGG | + | chr4_2:5117377-5117396 | Msa0584900:intron | 45.0% | |
| CTTAACGCATCAAGTCGTTC+TGG | + | chr4_2:5117410-5117429 | Msa0584900:intron | 45.0% | |
| ATGTGCGTCAACTTACTACC+AGG | - | chr4_2:5117640-5117659 | None:intergenic | 45.0% | |
| CTATTGACCTTCAACCGTCA+AGG | + | chr4_2:5118085-5118104 | Msa0584900:CDS | 45.0% | |
| ATATCCACCTTGACGGTTGA+AGG | - | chr4_2:5118095-5118114 | None:intergenic | 45.0% | |
| AGCAGATCACTCCAGTTAGA+TGG | + | chr4_2:5118126-5118145 | Msa0584900:exon | 45.0% | |
| TGCTCTTGGCAGAGTTAACA+TGG | - | chr4_2:5118289-5118308 | None:intergenic | 45.0% | |
| !! | TTAACTCTGCCAAGAGCATC+TGG | + | chr4_2:5118291-5118310 | Msa0584900:three_prime_UTR | 45.0% |
| TACATACCACCAGATGCTCT+TGG | - | chr4_2:5118303-5118322 | None:intergenic | 45.0% | |
| AGCATCTGGTGGTATGTAAC+CGG | + | chr4_2:5118305-5118324 | Msa0584900:three_prime_UTR | 45.0% | |
| CTAGTAGCCTGTCTTTGGTT+CGG | - | chr4_2:5118363-5118382 | None:intergenic | 45.0% | |
| !! | TTATATAAAAAAAAAAGTTA+GGG | - | chr4_2:5115883-5115902 | None:intergenic | 5.0% |
| !! | ATTATATAAAAAAAAAAGTT+AGG | - | chr4_2:5115884-5115903 | None:intergenic | 5.0% |
| ACGAAACGCTCGTAACGATC+GGG | - | chr4_2:5115629-5115648 | None:intergenic | 50.0% | |
| GACGAAACGCTCGTAACGAT+CGG | - | chr4_2:5115630-5115649 | None:intergenic | 50.0% | |
| GTCTGTGTCCGTGCTTCAAA+TGG | - | chr4_2:5116045-5116064 | None:intergenic | 50.0% | |
| CACAGACACTGACACTGACA+CGG | + | chr4_2:5116058-5116077 | Msa0584900:intron | 50.0% | |
| ! | CATTGGTGAAGACTGGCTAG+TGG | - | chr4_2:5116844-5116863 | None:intergenic | 50.0% |
| TAGCCAGTCTTCACCAATGC+AGG | + | chr4_2:5116845-5116864 | Msa0584900:CDS | 50.0% | |
| ! | ATGCCTGCATTGGTGAAGAC+TGG | - | chr4_2:5116851-5116870 | None:intergenic | 50.0% |
| GTATTAGCGCCATTACTGCC+AGG | + | chr4_2:5117003-5117022 | Msa0584900:intron | 50.0% | |
| ! | GGGAATAGTTTGTGGAGGAC+GGG | + | chr4_2:5117217-5117236 | Msa0584900:CDS | 50.0% |
| TGATACTGCACATTGGAGCC+TGG | + | chr4_2:5117619-5117638 | Msa0584900:intron | 50.0% | |
| ACGGGCATATATGCTCAGTC+TGG | + | chr4_2:5117752-5117771 | Msa0584900:intron | 50.0% | |
| CGGGCATATATGCTCAGTCT+GGG | + | chr4_2:5117753-5117772 | Msa0584900:intron | 50.0% | |
| TTGACCTTCAACCGTCAAGG+TGG | + | chr4_2:5118088-5118107 | Msa0584900:CDS | 50.0% | |
| TGACACTGACACGGCGACAT+TGG | + | chr4_2:5116067-5116086 | Msa0584900:intron | 55.0% | |
| GTCATTTGACCCGGTGGTCA+TGG | + | chr4_2:5117120-5117139 | Msa0584900:intron | 55.0% | |
| GGGAGGGGATAGATCCTTCA+TGG | + | chr4_2:5117969-5117988 | Msa0584900:intron | 55.0% | |
| !! | ACTCTGCCAAGAGCATCTGG+TGG | + | chr4_2:5118294-5118313 | Msa0584900:three_prime_UTR | 55.0% |
| GAGCGTTTCGTCGTTCCCGA+AGG | + | chr4_2:5115638-5115657 | Msa0584900:CDS | 60.0% | |
| AGCGCCATTACTGCCAGGCT+AGG | + | chr4_2:5117008-5117027 | Msa0584900:intron | 60.0% | |
| CGAGCCTAGCCTGGCAGTAA+TGG | - | chr4_2:5117015-5117034 | None:intergenic | 60.0% | |
| AACGACTAGCGAGCCTAGCC+TGG | - | chr4_2:5117024-5117043 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 5115568 | 5118473 | 5115568 | ID=Msa0584900;Name=Msa0584900 |
| chr4_2 | mRNA | 5115568 | 5118473 | 5115568 | ID=Msa0584900-mRNA-1;Parent=Msa0584900;Name=Msa0584900-mRNA-1;_AED=0.18;_eAED=0.19;_QI=49|0.25|0.6|0.8|0.5|0.6|5|329|147 |
| chr4_2 | exon | 5115568 | 5115669 | 5115568 | ID=Msa0584900-mRNA-1:exon:1263;Parent=Msa0584900-mRNA-1 |
| chr4_2 | exon | 5115758 | 5115851 | 5115758 | ID=Msa0584900-mRNA-1:exon:1264;Parent=Msa0584900-mRNA-1 |
| chr4_2 | exon | 5116834 | 5116929 | 5116834 | ID=Msa0584900-mRNA-1:exon:1265;Parent=Msa0584900-mRNA-1 |
| chr4_2 | exon | 5117196 | 5117310 | 5117196 | ID=Msa0584900-mRNA-1:exon:1266;Parent=Msa0584900-mRNA-1 |
| chr4_2 | exon | 5118059 | 5118473 | 5118059 | ID=Msa0584900-mRNA-1:exon:1267;Parent=Msa0584900-mRNA-1 |
| chr4_2 | five_prime_UTR | 5115568 | 5115616 | 5115568 | ID=Msa0584900-mRNA-1:five_prime_utr;Parent=Msa0584900-mRNA-1 |
| chr4_2 | CDS | 5115617 | 5115669 | 5115617 | ID=Msa0584900-mRNA-1:cds;Parent=Msa0584900-mRNA-1 |
| chr4_2 | CDS | 5115758 | 5115851 | 5115758 | ID=Msa0584900-mRNA-1:cds;Parent=Msa0584900-mRNA-1 |
| chr4_2 | CDS | 5116834 | 5116929 | 5116834 | ID=Msa0584900-mRNA-1:cds;Parent=Msa0584900-mRNA-1 |
| chr4_2 | CDS | 5117196 | 5117310 | 5117196 | ID=Msa0584900-mRNA-1:cds;Parent=Msa0584900-mRNA-1 |
| chr4_2 | CDS | 5118059 | 5118144 | 5118059 | ID=Msa0584900-mRNA-1:cds;Parent=Msa0584900-mRNA-1 |
| chr4_2 | three_prime_UTR | 5118145 | 5118473 | 5118145 | ID=Msa0584900-mRNA-1:three_prime_utr;Parent=Msa0584900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
