Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584720 | GAU28582.1 | 75.000 | 108 | 2 | 1 | 1 | 83 | 1 | 108 | 4.51e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584720 | sp|Q38859|NRPBB_ARATH | 67.593 | 108 | 10 | 1 | 1 | 83 | 1 | 108 | 4.65e-44 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584720 | A0A2Z6MUC9 | 75.000 | 108 | 2 | 1 | 1 | 83 | 1 | 108 | 2.15e-46 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0562950 | Msa0584720 | 0.808933 | 2.428130e-50 | -8.615850e-47 |
| Msa0584720 | Msa0584900 | 0.948929 | 3.545890e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584720 | MtrunA17_Chr4g0019391 | 74.074 | 108 | 3 | 1 | 1 | 83 | 1 | 108 | 1.07e-49 | 154 |
| Msa0584720 | MtrunA17_Chr6g0449301 | 73.148 | 108 | 4 | 1 | 1 | 83 | 1 | 108 | 9.20e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584720 | AT3G52090.1 | 67.593 | 108 | 10 | 1 | 1 | 83 | 1 | 108 | 4.73e-45 | 143 |
| Msa0584720 | AT3G52090.2 | 88.235 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 1.75e-28 | 102 |
Find 45 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTATCAAGATCATTAA+TGG | 0.184342 | 4_2:-4648992 | None:intergenic |
| TATCAACGAAAATGTTTAAA+AGG | 0.207083 | 4_2:+4650308 | Msa0584720:three_prime_UTR |
| CATTACTAGTAGCCTGTCTT+TGG | 0.279210 | 4_2:-4650487 | None:intergenic |
| CTATTTAAATTCCATCTAAC+TGG | 0.298156 | 4_2:-4650259 | None:intergenic |
| GACACAACTAAACCAGTATT+TGG | 0.333141 | 4_2:-4650356 | None:intergenic |
| GTATTGAAACTACCAAATAC+TGG | 0.372719 | 4_2:+4650344 | Msa0584720:three_prime_UTR |
| GTTGATATTTGTGGAGGAAT+TGG | 0.397693 | 4_2:+4649440 | Msa0584720:CDS |
| AGCAGATCACTCCAGTTAGA+TGG | 0.397966 | 4_2:+4650248 | Msa0584720:exon |
| CTAGTAGCCTGTCTTTGGTT+CGG | 0.405339 | 4_2:-4650482 | None:intergenic |
| TTTAGAAGGAGAGGAATAGA+AGG | 0.408577 | 4_2:+4649400 | Msa0584720:intron |
| TAAACAAACACATGCATAAC+CGG | 0.419483 | 4_2:-4650446 | None:intergenic |
| TTAACTCTGCCAAGAGCATC+TGG | 0.426290 | 4_2:+4650413 | Msa0584720:three_prime_UTR |
| TACCTCAAAACCGCTCTTCA+AGG | 0.435176 | 4_2:-4649022 | None:intergenic |
| AAGTAAGAAGTTGATATTTG+TGG | 0.440987 | 4_2:+4649431 | Msa0584720:CDS |
| TGTGTGATCTTCTCTTTCAA+TGG | 0.448451 | 4_2:-4647924 | None:intergenic |
| AGCATCTGGTGGTATGTAAC+CGG | 0.466653 | 4_2:+4650427 | Msa0584720:three_prime_UTR |
| ATCAACGAAAATGTTTAAAA+GGG | 0.480523 | 4_2:+4650309 | Msa0584720:three_prime_UTR |
| GTCCATTAATGATCTTGATA+AGG | 0.483700 | 4_2:+4648990 | Msa0584720:CDS |
| ATATCCACCTTGACGGTTGA+AGG | 0.486636 | 4_2:-4650214 | None:intergenic |
| TATCAAGATCATTAATGGAC+TGG | 0.497738 | 4_2:-4648987 | None:intergenic |
| TAGCCAGTCTTCACCAATGC+AGG | 0.510252 | 4_2:+4648957 | Msa0584720:CDS |
| AACGAAAATGTTTAAAAGGG+AGG | 0.517589 | 4_2:+4650312 | Msa0584720:three_prime_UTR |
| GACGAAACGCTCGTAACGAT+CGG | 0.522382 | 4_2:-4647756 | None:intergenic |
| TTTAAAGGGTTTCGTACGAG+AGG | 0.523969 | 4_2:+4647870 | Msa0584720:intron |
| GAAAGAGAAGATCACACAAT+CGG | 0.526016 | 4_2:+4647929 | Msa0584720:CDS |
| ACTCACAATATCCACCTTGA+CGG | 0.529058 | 4_2:-4650221 | None:intergenic |
| ACGAAACGCTCGTAACGATC+GGG | 0.531962 | 4_2:-4647755 | None:intergenic |
| TGCTCTTGGCAGAGTTAACA+TGG | 0.541755 | 4_2:-4650408 | None:intergenic |
| TTTGGATGATTTAGAAGGAG+AGG | 0.542114 | 4_2:+4649391 | Msa0584720:intron |
| TAGAAAACAGAGAGAGCAAA+GGG | 0.555899 | 4_2:+4647709 | Msa0584720:five_prime_UTR |
| GAGCGTTTCGTCGTTCCCGA+AGG | 0.559225 | 4_2:+4647767 | Msa0584720:CDS |
| TACATACCACCAGATGCTCT+TGG | 0.561678 | 4_2:-4650422 | None:intergenic |
| ACTGGTTTAGTTGTGTCACA+TGG | 0.563312 | 4_2:+4650362 | Msa0584720:three_prime_UTR |
| ATGCCTGCATTGGTGAAGAC+TGG | 0.568041 | 4_2:-4648960 | None:intergenic |
| TAAGAAGTTGATATTTGTGG+AGG | 0.572145 | 4_2:+4649434 | Msa0584720:CDS |
| TTAAAGGGTTTCGTACGAGA+GGG | 0.578031 | 4_2:+4647871 | Msa0584720:intron |
| GACTGGTTATATGCCTGCAT+TGG | 0.619640 | 4_2:-4648970 | None:intergenic |
| GTAGAAAACAGAGAGAGCAA+AGG | 0.625950 | 4_2:+4647708 | Msa0584720:five_prime_UTR |
| CTATTGACCTTCAACCGTCA+AGG | 0.626682 | 4_2:+4650207 | Msa0584720:CDS |
| GAACTTGATACCTTGAAGAG+CGG | 0.632528 | 4_2:+4649012 | Msa0584720:CDS |
| CTCTCAGACTGTGAGAAGAG+TGG | 0.644057 | 4_2:+4647686 | None:intergenic |
| CATTGGTGAAGACTGGCTAG+TGG | 0.648304 | 4_2:-4648953 | None:intergenic |
| TGGGTAGTACATACATGCGA+AGG | 0.665982 | 4_2:-4647958 | None:intergenic |
| TTGACCTTCAACCGTCAAGG+TGG | 0.682456 | 4_2:+4650210 | Msa0584720:CDS |
| ACTCTGCCAAGAGCATCTGG+TGG | 0.724915 | 4_2:+4650416 | Msa0584720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTAATTTTTAA+AGG | + | chr4_2:4647855-4647874 | Msa0584720:intron | 0.0% |
| !!! | ATTTTTTTTTAATTTTTAAA+GGG | + | chr4_2:4647856-4647875 | Msa0584720:intron | 0.0% |
| !!! | ATTTTTGATTTTTTTTTTGT+TGG | + | chr4_2:4648021-4648040 | Msa0584720:intron | 10.0% |
| !! | AAAAAAAATACAACATAAAT+AGG | - | chr4_2:4648831-4648850 | None:intergenic | 10.0% |
| !! | ATATATAATACGAAAATAGT+TGG | - | chr4_2:4648276-4648295 | None:intergenic | 15.0% |
| !!! | AGTTTTTAATTTGTTAGTAA+TGG | - | chr4_2:4650151-4650170 | None:intergenic | 15.0% |
| !! | TTGAGAAAAAAAAGAGAATA+GGG | - | chr4_2:4647837-4647856 | None:intergenic | 20.0% |
| !! | ATTGAGAAAAAAAAGAGAAT+AGG | - | chr4_2:4647838-4647857 | None:intergenic | 20.0% |
| !!! | GTTTTGATTAAAATGAAAGT+GGG | - | chr4_2:4647980-4647999 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGGTTTGTATTT+TGG | + | chr4_2:4648033-4648052 | Msa0584720:intron | 20.0% |
| !! | TTCAGTACAAAATTATCATT+AGG | + | chr4_2:4648121-4648140 | Msa0584720:intron | 20.0% |
| !! | TCAGTACAAAATTATCATTA+GGG | + | chr4_2:4648122-4648141 | Msa0584720:intron | 20.0% |
| !!! | AAAGAGGTTATAAACTATTT+TGG | + | chr4_2:4648355-4648374 | Msa0584720:intron | 20.0% |
| !! | ATAGATTTATTTGGAGAAAA+TGG | + | chr4_2:4648453-4648472 | Msa0584720:intron | 20.0% |
| !!! | TAAATTAACTGAATTGGTTT+CGG | + | chr4_2:4648523-4648542 | Msa0584720:intron | 20.0% |
| !! | GGTTATGTTAAAACAAAAAA+AGG | - | chr4_2:4648560-4648579 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTTTCTTAAAGT+AGG | + | chr4_2:4648845-4648864 | Msa0584720:intron | 20.0% |
| !!! | ATTTTTATCTGTATGTGAAT+TGG | + | chr4_2:4648886-4648905 | Msa0584720:intron | 20.0% |
| !!! | TTTTTATCTGTATGTGAATT+GGG | + | chr4_2:4648887-4648906 | Msa0584720:intron | 20.0% |
| !!! | AGAGTACTATCAATAAAAAA+GGG | - | chr4_2:4649926-4649945 | None:intergenic | 20.0% |
| !!! | AAGAGTACTATCAATAAAAA+AGG | - | chr4_2:4649927-4649946 | None:intergenic | 20.0% |
| !!! | CGCTTTTTATTATTTTGAAA+TGG | - | chr4_2:4649952-4649971 | None:intergenic | 20.0% |
| !! | AAATTAAAAACTTCAATTGC+AGG | + | chr4_2:4650159-4650178 | Msa0584720:intron | 20.0% |
| !! | TATCAACGAAAATGTTTAAA+AGG | + | chr4_2:4650308-4650327 | Msa0584720:three_prime_UTR | 20.0% |
| !! | ATCAACGAAAATGTTTAAAA+GGG | + | chr4_2:4650309-4650328 | Msa0584720:three_prime_UTR | 20.0% |
| !! | AAGAATAGAGAGATACTTTT+TGG | - | chr4_2:4647795-4647814 | None:intergenic | 25.0% |
| !!! | GGTTTTGATTAAAATGAAAG+TGG | - | chr4_2:4647981-4648000 | None:intergenic | 25.0% |
| !!! | GTTTGTATTTTGGTTTTTTC+AGG | + | chr4_2:4648043-4648062 | Msa0584720:intron | 25.0% |
| ! | ATCCAGCAAATAAAACATTA+GGG | - | chr4_2:4648083-4648102 | None:intergenic | 25.0% |
| ! | TATCCAGCAAATAAAACATT+AGG | - | chr4_2:4648084-4648103 | None:intergenic | 25.0% |
| !! | ATGATAATTTTGTACTGAAG+AGG | - | chr4_2:4648120-4648139 | None:intergenic | 25.0% |
| ! | TCGAAAATAGCTTATGATAA+TGG | - | chr4_2:4648302-4648321 | None:intergenic | 25.0% |
| ! | AAATAAATCTATAGCCTGTT+TGG | - | chr4_2:4648445-4648464 | None:intergenic | 25.0% |
| ! | AAACAGGCTATAGATTTATT+TGG | + | chr4_2:4648444-4648463 | Msa0584720:intron | 25.0% |
| ! | CATGTGTAAATTAACTGAAT+TGG | + | chr4_2:4648517-4648536 | Msa0584720:intron | 25.0% |
| !! | TTAACTCCTACTTTAAGAAA+AGG | - | chr4_2:4648854-4648873 | None:intergenic | 25.0% |
| ! | TTCCTTATCAAGATCATTAA+TGG | - | chr4_2:4648995-4649014 | None:intergenic | 25.0% |
| ! | GAAAGGAGAGTAAATAAATA+TGG | - | chr4_2:4649067-4649086 | None:intergenic | 25.0% |
| ! | TGTATAAGAATTGCTAAGAA+AGG | - | chr4_2:4649084-4649103 | None:intergenic | 25.0% |
| ! | GCAAGTAAAGATATTCAAAA+GGG | - | chr4_2:4649167-4649186 | None:intergenic | 25.0% |
| ! | TGCAAGTAAAGATATTCAAA+AGG | - | chr4_2:4649168-4649187 | None:intergenic | 25.0% |
| !!! | AAGTAAGAAGTTGATATTTG+TGG | + | chr4_2:4649431-4649450 | Msa0584720:CDS | 25.0% |
| ! | TTGGTTGAATGTAAAATCAA+AGG | + | chr4_2:4649459-4649478 | Msa0584720:intron | 25.0% |
| ! | TGGTTGAATGTAAAATCAAA+GGG | + | chr4_2:4649460-4649479 | Msa0584720:intron | 25.0% |
| ! | TAATTACGATCTAATCATGA+CGG | + | chr4_2:4649855-4649874 | Msa0584720:intron | 25.0% |
| ! | GAAGAACATATGAAAACAAA+AGG | - | chr4_2:4649982-4650001 | None:intergenic | 25.0% |
| !! | TTTGAAATGTACATACATAC+TGG | + | chr4_2:4650052-4650071 | Msa0584720:intron | 25.0% |
| ! | ATACTAATTAGAATCCATGA+AGG | - | chr4_2:4650108-4650127 | None:intergenic | 25.0% |
| ! | CTATTTAAATTCCATCTAAC+TGG | - | chr4_2:4650262-4650281 | None:intergenic | 25.0% |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr4_2:4648428-4648447 | Msa0584720:intron | 30.0% | |
| ATGTTGAGCTTATTAATCGT+TGG | + | chr4_2:4648479-4648498 | Msa0584720:intron | 30.0% | |
| ACTTTATCATAGCAATGGAT+TGG | + | chr4_2:4648582-4648601 | Msa0584720:intron | 30.0% | |
| ! | TATCAAGATCATTAATGGAC+TGG | - | chr4_2:4648990-4649009 | None:intergenic | 30.0% |
| GTCCATTAATGATCTTGATA+AGG | + | chr4_2:4648990-4649009 | Msa0584720:CDS | 30.0% | |
| ATGGACAATGTAAATAGAAG+CGG | - | chr4_2:4649048-4649067 | None:intergenic | 30.0% | |
| ! | ATTAGATTTGTCATTTGACC+CGG | + | chr4_2:4649223-4649242 | Msa0584720:intron | 30.0% |
| AAACGTTGTTTACATGCATT+TGG | + | chr4_2:4649308-4649327 | Msa0584720:intron | 30.0% | |
| AACGTTGTTTACATGCATTT+GGG | + | chr4_2:4649309-4649328 | Msa0584720:intron | 30.0% | |
| ! | AGAACATCAAATTGATAGTC+TGG | + | chr4_2:4649358-4649377 | Msa0584720:intron | 30.0% |
| ! | ATCAAATTGATAGTCTGGAT+TGG | + | chr4_2:4649363-4649382 | Msa0584720:intron | 30.0% |
| ATGTGTTTGGATGATTTAGA+AGG | + | chr4_2:4649386-4649405 | Msa0584720:intron | 30.0% | |
| !! | TAAGAAGTTGATATTTGTGG+AGG | + | chr4_2:4649434-4649453 | Msa0584720:CDS | 30.0% |
| TTTAATCTGATACTGCACAT+TGG | + | chr4_2:4649734-4649753 | Msa0584720:intron | 30.0% | |
| TTCTTCTGTACCATTTGTAT+GGG | + | chr4_2:4649825-4649844 | Msa0584720:intron | 30.0% | |
| AATTACGATCTAATCATGAC+GGG | + | chr4_2:4649856-4649875 | Msa0584720:intron | 30.0% | |
| !! | CTATGACTGTATTTTTGTGT+TGG | + | chr4_2:4650001-4650020 | Msa0584720:intron | 30.0% |
| ! | CATACTGGTTATTTATCGAT+TGG | + | chr4_2:4650067-4650086 | Msa0584720:intron | 30.0% |
| TTAAAAACTTCAATTGCAGG+CGG | + | chr4_2:4650162-4650181 | Msa0584720:intron | 30.0% | |
| AACGAAAATGTTTAAAAGGG+AGG | + | chr4_2:4650312-4650331 | Msa0584720:three_prime_UTR | 30.0% | |
| GTATTGAAACTACCAAATAC+TGG | + | chr4_2:4650344-4650363 | Msa0584720:three_prime_UTR | 30.0% | |
| TAAACAAACACATGCATAAC+CGG | - | chr4_2:4650449-4650468 | None:intergenic | 30.0% | |
| !!! | TTTGGTTCGGCTTTTTTAAT+GGG | - | chr4_2:4650472-4650491 | None:intergenic | 30.0% |
| TAGAAAACAGAGAGAGCAAA+GGG | + | chr4_2:4647709-4647728 | Msa0584720:five_prime_UTR | 35.0% | |
| TGTGTGATCTTCTCTTTCAA+TGG | - | chr4_2:4647927-4647946 | None:intergenic | 35.0% | |
| GAAAGAGAAGATCACACAAT+CGG | + | chr4_2:4647929-4647948 | Msa0584720:CDS | 35.0% | |
| !!! | GACCCTAATGTTTTATTTGC+TGG | + | chr4_2:4648078-4648097 | Msa0584720:intron | 35.0% |
| ! | ATTTTGTACTGAAGAGGATG+AGG | - | chr4_2:4648114-4648133 | None:intergenic | 35.0% |
| !! | AGCTATTTTCGAGAGCTTTA+TGG | + | chr4_2:4648310-4648329 | Msa0584720:intron | 35.0% |
| ! | TGAATTGGTTTCGGTTCAAA+TGG | + | chr4_2:4648532-4648551 | Msa0584720:intron | 35.0% |
| ACCACACTTTATCATAGCAA+TGG | + | chr4_2:4648577-4648596 | Msa0584720:intron | 35.0% | |
| TCCATTGCTATGATAAAGTG+TGG | - | chr4_2:4648581-4648600 | None:intergenic | 35.0% | |
| ATGCATTTGGGAATAGTTTG+TGG | + | chr4_2:4649321-4649340 | Msa0584720:intron | 35.0% | |
| TTTGGATGATTTAGAAGGAG+AGG | + | chr4_2:4649391-4649410 | Msa0584720:intron | 35.0% | |
| TTTAGAAGGAGAGGAATAGA+AGG | + | chr4_2:4649400-4649419 | Msa0584720:intron | 35.0% | |
| GTTGATATTTGTGGAGGAAT+TGG | + | chr4_2:4649440-4649459 | Msa0584720:CDS | 35.0% | |
| ! | ATGAATCCATTGGCATGTTT+TGG | + | chr4_2:4649509-4649528 | Msa0584720:intron | 35.0% |
| ! | TTGAGAACTTGAGCTTTGAT+AGG | + | chr4_2:4649597-4649616 | Msa0584720:intron | 35.0% |
| ! | TTTAAGGTGGAAGTGAAATG+TGG | + | chr4_2:4649639-4649658 | Msa0584720:intron | 35.0% |
| ACGCACATCAATAACAATGT+TGG | + | chr4_2:4649774-4649793 | Msa0584720:intron | 35.0% | |
| GTTCTTCTGTACCATTTGTA+TGG | + | chr4_2:4649824-4649843 | Msa0584720:intron | 35.0% | |
| ! | ACTGGTTATTTATCGATTGG+TGG | + | chr4_2:4650070-4650089 | Msa0584720:intron | 35.0% |
| ! | CTGGTTATTTATCGATTGGT+GGG | + | chr4_2:4650071-4650090 | Msa0584720:intron | 35.0% |
| ! | TTATTTATCGATTGGTGGGA+GGG | + | chr4_2:4650075-4650094 | Msa0584720:intron | 35.0% |
| ! | GGAGTTGTTGAAGTTTTCAA+AGG | + | chr4_2:4650183-4650202 | Msa0584720:CDS | 35.0% |
| GACACAACTAAACCAGTATT+TGG | - | chr4_2:4650359-4650378 | None:intergenic | 35.0% | |
| !!! | CTTTGGTTCGGCTTTTTTAA+TGG | - | chr4_2:4650473-4650492 | None:intergenic | 35.0% |
| GTAGAAAACAGAGAGAGCAA+AGG | + | chr4_2:4647708-4647727 | Msa0584720:five_prime_UTR | 40.0% | |
| !!! | AGATACTTTTTGGTGCCTTC+GGG | - | chr4_2:4647785-4647804 | None:intergenic | 40.0% |
| !!! | GAGATACTTTTTGGTGCCTT+CGG | - | chr4_2:4647786-4647805 | None:intergenic | 40.0% |
| TTTAAAGGGTTTCGTACGAG+AGG | + | chr4_2:4647870-4647889 | Msa0584720:intron | 40.0% | |
| TTAAAGGGTTTCGTACGAGA+GGG | + | chr4_2:4647871-4647890 | Msa0584720:intron | 40.0% | |
| ! | GTTACTTCCCATTTGAAGCA+CGG | + | chr4_2:4648152-4648171 | Msa0584720:intron | 40.0% |
| GCTGAAAACAGCTTAGAAAG+AGG | + | chr4_2:4648339-4648358 | Msa0584720:intron | 40.0% | |
| CACTTGTGACAACACTGTTT+GGG | - | chr4_2:4648389-4648408 | None:intergenic | 40.0% | |
| GTTGTATGCATAAGCTACTC+TGG | - | chr4_2:4648693-4648712 | None:intergenic | 40.0% | |
| GAACTTGATACCTTGAAGAG+CGG | + | chr4_2:4649012-4649031 | Msa0584720:CDS | 40.0% | |
| ! | CAAATTTTTCCATGACCACC+GGG | - | chr4_2:4649244-4649263 | None:intergenic | 40.0% |
| ! | CCAAATTTTTCCATGACCAC+CGG | - | chr4_2:4649245-4649264 | None:intergenic | 40.0% |
| !! | GAAAAATTTGGTGTTGACCG+AGG | + | chr4_2:4649254-4649273 | Msa0584720:intron | 40.0% |
| GAGTTATATACGCTGAACCT+CGG | - | chr4_2:4649274-4649293 | None:intergenic | 40.0% | |
| ! | CATTTGGGAATAGTTTGTGG+AGG | + | chr4_2:4649324-4649343 | Msa0584720:intron | 40.0% |
| ! | TAGTCTGGATTGGATGTGTT+TGG | + | chr4_2:4649373-4649392 | Msa0584720:intron | 40.0% |
| GGATTCATGTTCGTGTGAAA+TGG | - | chr4_2:4649497-4649516 | None:intergenic | 40.0% | |
| TCACACGAACATGAATCCAT+TGG | + | chr4_2:4649499-4649518 | Msa0584720:intron | 40.0% | |
| GTTAAGCCAAAACATGCCAA+TGG | - | chr4_2:4649518-4649537 | None:intergenic | 40.0% | |
| TTAACGCATCAAGTCGTTCT+GGG | + | chr4_2:4649533-4649552 | Msa0584720:intron | 40.0% | |
| ! | CTTGAGCTTTGATAGGAAAG+AGG | + | chr4_2:4649604-4649623 | Msa0584720:intron | 40.0% |
| !!! | GAGGTGAGCGAGTTTTTTTA+AGG | + | chr4_2:4649623-4649642 | Msa0584720:intron | 40.0% |
| !!! | GTGAGCGAGTTTTTTTAAGG+TGG | + | chr4_2:4649626-4649645 | Msa0584720:intron | 40.0% |
| TGTGATAGTATGCGAGAAGT+AGG | + | chr4_2:4649670-4649689 | Msa0584720:intron | 40.0% | |
| TCTGTGAGTTGTGTTCTCTT+TGG | + | chr4_2:4649708-4649727 | Msa0584720:intron | 40.0% | |
| TTCTGTACCATTTGTATGGG+TGG | + | chr4_2:4649828-4649847 | Msa0584720:intron | 40.0% | |
| TCTGTACCATTTGTATGGGT+GGG | + | chr4_2:4649829-4649848 | Msa0584720:intron | 40.0% | |
| TTAACACCCACCCATACAAA+TGG | - | chr4_2:4649838-4649857 | None:intergenic | 40.0% | |
| TAGTCTCTCAACTAGTGCTT+TGG | + | chr4_2:4649899-4649918 | Msa0584720:intron | 40.0% | |
| ! | GTTATTTATCGATTGGTGGG+AGG | + | chr4_2:4650074-4650093 | Msa0584720:intron | 40.0% |
| ! | TATTTATCGATTGGTGGGAG+GGG | + | chr4_2:4650076-4650095 | Msa0584720:intron | 40.0% |
| ACTCACAATATCCACCTTGA+CGG | - | chr4_2:4650224-4650243 | None:intergenic | 40.0% | |
| ! | ACTGGTTTAGTTGTGTCACA+TGG | + | chr4_2:4650362-4650381 | Msa0584720:three_prime_UTR | 40.0% |
| AAAAAAGCCGAACCAAAGAC+AGG | + | chr4_2:4650475-4650494 | Msa0584720:three_prime_UTR | 40.0% | |
| CATTACTAGTAGCCTGTCTT+TGG | - | chr4_2:4650490-4650509 | None:intergenic | 40.0% | |
| TGGGTAGTACATACATGCGA+AGG | - | chr4_2:4647961-4647980 | None:intergenic | 45.0% | |
| TCTGTGTCCGTGCTTCAAAT+GGG | - | chr4_2:4648162-4648181 | None:intergenic | 45.0% | |
| CCACTTGTGACAACACTGTT+TGG | - | chr4_2:4648390-4648409 | None:intergenic | 45.0% | |
| CCAAACAGTGTTGTCACAAG+TGG | + | chr4_2:4648387-4648406 | Msa0584720:intron | 45.0% | |
| ! | CTGGAGAGCGTGAAAACTTA+TGG | - | chr4_2:4648674-4648693 | None:intergenic | 45.0% |
| ! | GACTGGTTATATGCCTGCAT+TGG | - | chr4_2:4648973-4648992 | None:intergenic | 45.0% |
| ! | TACCTTGAAGAGCGGTTTTG+AGG | + | chr4_2:4649020-4649039 | Msa0584720:CDS | 45.0% |
| TACCTCAAAACCGCTCTTCA+AGG | - | chr4_2:4649025-4649044 | None:intergenic | 45.0% | |
| ! | AGATTTGTCATTTGACCCGG+TGG | + | chr4_2:4649226-4649245 | Msa0584720:intron | 45.0% |
| CCGGTGGTCATGGAAAAATT+TGG | + | chr4_2:4649242-4649261 | Msa0584720:intron | 45.0% | |
| ! | TGGGAATAGTTTGTGGAGGA+CGG | + | chr4_2:4649328-4649347 | Msa0584720:intron | 45.0% |
| CTTAACGCATCAAGTCGTTC+TGG | + | chr4_2:4649532-4649551 | Msa0584720:intron | 45.0% | |
| TGATACTGCACATTGGAGCT+TGG | + | chr4_2:4649741-4649760 | Msa0584720:intron | 45.0% | |
| CTATTGACCTTCAACCGTCA+AGG | + | chr4_2:4650207-4650226 | Msa0584720:CDS | 45.0% | |
| ATATCCACCTTGACGGTTGA+AGG | - | chr4_2:4650217-4650236 | None:intergenic | 45.0% | |
| AGCAGATCACTCCAGTTAGA+TGG | + | chr4_2:4650248-4650267 | Msa0584720:exon | 45.0% | |
| TGCTCTTGGCAGAGTTAACA+TGG | - | chr4_2:4650411-4650430 | None:intergenic | 45.0% | |
| !! | TTAACTCTGCCAAGAGCATC+TGG | + | chr4_2:4650413-4650432 | Msa0584720:three_prime_UTR | 45.0% |
| TACATACCACCAGATGCTCT+TGG | - | chr4_2:4650425-4650444 | None:intergenic | 45.0% | |
| AGCATCTGGTGGTATGTAAC+CGG | + | chr4_2:4650427-4650446 | Msa0584720:three_prime_UTR | 45.0% | |
| CTAGTAGCCTGTCTTTGGTT+CGG | - | chr4_2:4650485-4650504 | None:intergenic | 45.0% | |
| !! | TTATATAAAAAAAAAAGTTA+GGG | - | chr4_2:4648002-4648021 | None:intergenic | 5.0% |
| !! | ATTATATAAAAAAAAAAGTT+AGG | - | chr4_2:4648003-4648022 | None:intergenic | 5.0% |
| ACGAAACGCTCGTAACGATC+GGG | - | chr4_2:4647758-4647777 | None:intergenic | 50.0% | |
| GACGAAACGCTCGTAACGAT+CGG | - | chr4_2:4647759-4647778 | None:intergenic | 50.0% | |
| GTCTGTGTCCGTGCTTCAAA+TGG | - | chr4_2:4648163-4648182 | None:intergenic | 50.0% | |
| ! | CATTGGTGAAGACTGGCTAG+TGG | - | chr4_2:4648956-4648975 | None:intergenic | 50.0% |
| TAGCCAGTCTTCACCAATGC+AGG | + | chr4_2:4648957-4648976 | Msa0584720:CDS | 50.0% | |
| ! | ATGCCTGCATTGGTGAAGAC+TGG | - | chr4_2:4648963-4648982 | None:intergenic | 50.0% |
| GTATTAGCGCCATTACTGCC+AGG | + | chr4_2:4649115-4649134 | Msa0584720:intron | 50.0% | |
| ! | GGGAATAGTTTGTGGAGGAC+GGG | + | chr4_2:4649329-4649348 | Msa0584720:intron | 50.0% |
| ACGGGCATATATGCTCAGTC+TGG | + | chr4_2:4649874-4649893 | Msa0584720:intron | 50.0% | |
| CGGGCATATATGCTCAGTCT+GGG | + | chr4_2:4649875-4649894 | Msa0584720:intron | 50.0% | |
| TTGACCTTCAACCGTCAAGG+TGG | + | chr4_2:4650210-4650229 | Msa0584720:CDS | 50.0% | |
| CACGGACACAGACACTGACA+CGG | + | chr4_2:4648170-4648189 | Msa0584720:intron | 55.0% | |
| AGACACTGACACGGCGACAT+TGG | + | chr4_2:4648179-4648198 | Msa0584720:intron | 55.0% | |
| CAAGCCTAGCCTGGCAGTAA+TGG | - | chr4_2:4649127-4649146 | None:intergenic | 55.0% | |
| AACGACTAGCAAGCCTAGCC+TGG | - | chr4_2:4649136-4649155 | None:intergenic | 55.0% | |
| GTCATTTGACCCGGTGGTCA+TGG | + | chr4_2:4649232-4649251 | Msa0584720:intron | 55.0% | |
| GGGAGGGGATAGATCCTTCA+TGG | + | chr4_2:4650091-4650110 | Msa0584720:intron | 55.0% | |
| !! | ACTCTGCCAAGAGCATCTGG+TGG | + | chr4_2:4650416-4650435 | Msa0584720:three_prime_UTR | 55.0% |
| GAGCGTTTCGTCGTTCCCGA+AGG | + | chr4_2:4647767-4647786 | Msa0584720:CDS | 60.0% | |
| AGCGCCATTACTGCCAGGCT+AGG | + | chr4_2:4649120-4649139 | Msa0584720:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 4647697 | 4650595 | 4647697 | ID=Msa0584720;Name=Msa0584720 |
| chr4_2 | mRNA | 4647697 | 4650595 | 4647697 | ID=Msa0584720-mRNA-1;Parent=Msa0584720;Name=Msa0584720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=49|0.25|0.6|0.8|0.75|0.8|5|329|130 |
| chr4_2 | exon | 4647697 | 4647798 | 4647697 | ID=Msa0584720-mRNA-1:exon:1186;Parent=Msa0584720-mRNA-1 |
| chr4_2 | exon | 4647877 | 4647970 | 4647877 | ID=Msa0584720-mRNA-1:exon:1187;Parent=Msa0584720-mRNA-1 |
| chr4_2 | exon | 4648946 | 4649041 | 4648946 | ID=Msa0584720-mRNA-1:exon:1188;Parent=Msa0584720-mRNA-1 |
| chr4_2 | exon | 4649405 | 4649468 | 4649405 | ID=Msa0584720-mRNA-1:exon:1189;Parent=Msa0584720-mRNA-1 |
| chr4_2 | exon | 4650181 | 4650595 | 4650181 | ID=Msa0584720-mRNA-1:exon:1190;Parent=Msa0584720-mRNA-1 |
| chr4_2 | five_prime_UTR | 4647697 | 4647745 | 4647697 | ID=Msa0584720-mRNA-1:five_prime_utr;Parent=Msa0584720-mRNA-1 |
| chr4_2 | CDS | 4647746 | 4647798 | 4647746 | ID=Msa0584720-mRNA-1:cds;Parent=Msa0584720-mRNA-1 |
| chr4_2 | CDS | 4647877 | 4647970 | 4647877 | ID=Msa0584720-mRNA-1:cds;Parent=Msa0584720-mRNA-1 |
| chr4_2 | CDS | 4648946 | 4649041 | 4648946 | ID=Msa0584720-mRNA-1:cds;Parent=Msa0584720-mRNA-1 |
| chr4_2 | CDS | 4649405 | 4649468 | 4649405 | ID=Msa0584720-mRNA-1:cds;Parent=Msa0584720-mRNA-1 |
| chr4_2 | CDS | 4650181 | 4650266 | 4650181 | ID=Msa0584720-mRNA-1:cds;Parent=Msa0584720-mRNA-1 |
| chr4_2 | three_prime_UTR | 4650267 | 4650595 | 4650267 | ID=Msa0584720-mRNA-1:three_prime_utr;Parent=Msa0584720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
