Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587610 | XP_013454677.1 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 3.32e-173 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587610 | sp|Q9ZW85|LEUD3_ARATH | 73.059 | 219 | 51 | 3 | 36 | 247 | 31 | 248 | 1.21e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587610 | A0A072UHV5 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 1.58e-173 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0587610 | Msa0844560 | 0.800676 | 1.289151e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587610 | MtrunA17_Chr4g0003691 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 3.05e-177 | 487 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587610 | AT2G43090.1 | 73.059 | 219 | 51 | 3 | 36 | 247 | 31 | 248 | 1.23e-105 | 306 |
| Msa0587610 | AT2G43100.1 | 57.471 | 261 | 90 | 6 | 1 | 247 | 1 | 254 | 1.44e-95 | 281 |
| Msa0587610 | AT3G58990.1 | 60.800 | 250 | 83 | 4 | 3 | 247 | 13 | 252 | 4.64e-94 | 277 |
| Msa0587610 | AT2G43090.2 | 59.817 | 219 | 51 | 4 | 36 | 247 | 31 | 219 | 5.30e-79 | 237 |
Find 91 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGATGTCCAAATGCTTCT+AGG | 0.223781 | 4_2:+9245400 | Msa0587610:three_prime_UTR |
| TAAGGATGAGTTATGTAATT+TGG | 0.237954 | 4_2:+9245206 | Msa0587610:three_prime_UTR |
| TGTTAGAGGGAGTGAAAGTT+AGG | 0.240039 | 4_2:-9239854 | None:intergenic |
| TATTTAATATTAGGTGCTTC+TGG | 0.297737 | 4_2:+9241130 | Msa0587610:intron |
| AGAGAGTGAGAGTTTGTTAG+AGG | 0.307987 | 4_2:-9239868 | None:intergenic |
| ATCATCGGTGGTGCTAATTT+CGG | 0.350557 | 4_2:+9240218 | Msa0587610:CDS |
| CGAATCAGGAAGTCCGATTA+AGG | 0.352628 | 4_2:-9240144 | None:intergenic |
| AAGGAATTGTATTGAGAAAA+GGG | 0.359762 | 4_2:-9239921 | None:intergenic |
| GAAGGAATTGTATTGAGAAA+AGG | 0.365307 | 4_2:-9239922 | None:intergenic |
| GAACACGCTCCTGTCGCATT+AGG | 0.375074 | 4_2:+9240257 | Msa0587610:CDS |
| TTCCGGAACTCTGTGGCAAC+TGG | 0.385951 | 4_2:+9241193 | Msa0587610:CDS |
| TGGCGGCTGCTTATGCGTTC+CGG | 0.389379 | 4_2:-9239732 | None:intergenic |
| ACATGCAGCAGTAGATGCTT+TGG | 0.393799 | 4_2:+9245116 | Msa0587610:intron |
| CACGGCCTCTGCTACGTTGT+CGG | 0.394301 | 4_2:+9240029 | Msa0587610:CDS |
| TGACGGGAGAAGGTGGCGCT+TGG | 0.397446 | 4_2:-9239983 | None:intergenic |
| TCTATGTTCCTAGAAGCATT+TGG | 0.399646 | 4_2:-9245408 | None:intergenic |
| AGTATCAGTTGAAGCCGATT+GGG | 0.403012 | 4_2:+9241329 | Msa0587610:CDS |
| CACCAGTTGCCACAGAGTTC+CGG | 0.404491 | 4_2:-9241195 | None:intergenic |
| TTTAGGAATATATAATGTTA+AGG | 0.419931 | 4_2:+9245248 | Msa0587610:three_prime_UTR |
| GACGGGAGAAGGTGGCGCTT+GGG | 0.433110 | 4_2:-9239982 | None:intergenic |
| TTGTGGAGAGGTGGTGGTGA+TGG | 0.436019 | 4_2:-9239949 | None:intergenic |
| TGAATGGAATCCGTGAAAAC+AGG | 0.437480 | 4_2:-9245159 | None:intergenic |
| CTTGTCATGCAGCTTTGTTA+AGG | 0.443638 | 4_2:+9245188 | Msa0587610:three_prime_UTR |
| GCGGTGGTGGTGACGGGAGA+AGG | 0.443762 | 4_2:-9239993 | None:intergenic |
| CACTGCACTAAGCACATTTG+TGG | 0.445826 | 4_2:+9245463 | Msa0587610:three_prime_UTR |
| AATCGTACAGTGTACGAATC+AGG | 0.446981 | 4_2:-9240158 | None:intergenic |
| CCAAGCTTCTGATATTCATC+AGG | 0.447697 | 4_2:-9240113 | None:intergenic |
| GGAGTGAAAGTTAGGGTTTG+TGG | 0.448935 | 4_2:-9239846 | None:intergenic |
| TATTAAAACATTTGAAACTT+CGG | 0.449748 | 4_2:+9245275 | Msa0587610:three_prime_UTR |
| GACGCAGCGGTGGTGGTGAC+GGG | 0.454212 | 4_2:-9239999 | None:intergenic |
| CTTCTGATATTCATCAGGAT+TGG | 0.460357 | 4_2:-9240108 | None:intergenic |
| TTCTGGTGCTGCTGCTGTTG+TGG | 0.463567 | 4_2:+9241147 | Msa0587610:CDS |
| CGGTTGAGCTTGAGGAGAAT+CGG | 0.466189 | 4_2:+9241281 | Msa0587610:CDS |
| TTGAAGCCGATTGGGGATGC+TGG | 0.468277 | 4_2:+9241337 | Msa0587610:CDS |
| GTTAGAGGGAGTGAAAGTTA+GGG | 0.468951 | 4_2:-9239853 | None:intergenic |
| CATGCAGCAGTAGATGCTTT+GGG | 0.471995 | 4_2:+9245117 | Msa0587610:intron |
| ATCAGGATTGGAAGGGACTA+AGG | 0.475030 | 4_2:-9240096 | None:intergenic |
| ATCCCACCAGCCTCAATCAC+TGG | 0.477421 | 4_2:-9241361 | None:intergenic |
| GGAACATAGAAGTGCATGCT+TGG | 0.481726 | 4_2:+9245421 | Msa0587610:three_prime_UTR |
| ACTAAGGTAAGATGCTCAGC+AGG | 0.482246 | 4_2:-9240080 | None:intergenic |
| TTTGCTTATGCTAGGAAGAC+TGG | 0.483245 | 4_2:+9241385 | Msa0587610:CDS |
| GAGAGTGAGAGTTTGTTAGA+GGG | 0.494890 | 4_2:-9239867 | None:intergenic |
| GAAAGTTAGGGTTTGTGGAA+TGG | 0.502818 | 4_2:-9239841 | None:intergenic |
| GTGGGATCTTTGCTTATGCT+AGG | 0.511998 | 4_2:+9241377 | Msa0587610:CDS |
| CTCAACCGTCACCACATCTC+CGG | 0.514229 | 4_2:-9241266 | None:intergenic |
| TGACGCAGCGGTGGTGGTGA+CGG | 0.516417 | 4_2:-9240000 | None:intergenic |
| GAGTATCAGTTGAAGCCGAT+TGG | 0.521430 | 4_2:+9241328 | Msa0587610:CDS |
| GCTGGTCCAGTGATTGAGGC+TGG | 0.523054 | 4_2:+9241355 | Msa0587610:CDS |
| TGATATTCATCAGGATTGGA+AGG | 0.530168 | 4_2:-9240104 | None:intergenic |
| TGGCCATCCGATTAAAAGAT+CGG | 0.530876 | 4_2:+9245483 | Msa0587610:three_prime_UTR |
| CCTGATGAATATCAGAAGCT+TGG | 0.537422 | 4_2:+9240113 | Msa0587610:CDS |
| TATCAAATACCTAATGCGAC+AGG | 0.538398 | 4_2:-9240266 | None:intergenic |
| CGGTTGATTAATCATACGAC+TGG | 0.545585 | 4_2:+9241301 | Msa0587610:CDS |
| GCATGACAAGAGCATCTGAA+TGG | 0.546015 | 4_2:-9245175 | None:intergenic |
| GGATGCTGGTCCAGTGATTG+AGG | 0.546125 | 4_2:+9241351 | Msa0587610:CDS |
| ACTGTACGATTCGTTGAATC+CGG | 0.547314 | 4_2:+9240170 | Msa0587610:CDS |
| TTGTGTGAGGAGTGTCGTAC+CGG | 0.548705 | 4_2:+9241247 | Msa0587610:CDS |
| GCTTGGGCGCGTGTGATTTG+TGG | 0.551878 | 4_2:-9239966 | None:intergenic |
| GTGGTGGTGACGGGAGAAGG+TGG | 0.552121 | 4_2:-9239990 | None:intergenic |
| AAAAGATGACGCAGCGGTGG+TGG | 0.556369 | 4_2:-9240006 | None:intergenic |
| GTCCAGTGATTGAGGCTGGT+GGG | 0.557956 | 4_2:+9241359 | Msa0587610:CDS |
| ACGAAATACTCTATCATCAT+CGG | 0.558429 | 4_2:+9240203 | Msa0587610:CDS |
| ACTGGACCAGCATCCCCAAT+CGG | 0.559242 | 4_2:-9241343 | None:intergenic |
| AACACAATACCTCATCTAGT+AGG | 0.560121 | 4_2:-9241415 | None:intergenic |
| GGTCCAGTGATTGAGGCTGG+TGG | 0.569487 | 4_2:+9241358 | Msa0587610:CDS |
| TGTGATTTGTGGAGAGGTGG+TGG | 0.574848 | 4_2:-9239955 | None:intergenic |
| GGTGGTGCTAATTTCGGATG+CGG | 0.581372 | 4_2:+9240224 | Msa0587610:CDS |
| TGGTGCTGCTGCTGTTGTGG+CGG | 0.582109 | 4_2:+9241150 | Msa0587610:CDS |
| TGTGGTGACGGTTGAGCTTG+AGG | 0.593034 | 4_2:+9241273 | Msa0587610:CDS |
| GCGTGTGATTTGTGGAGAGG+TGG | 0.595387 | 4_2:-9239958 | None:intergenic |
| GAACTCTGTGGCAACTGGTG+AGG | 0.597013 | 4_2:+9241198 | Msa0587610:CDS |
| GATATTCATCAGGATTGGAA+GGG | 0.607677 | 4_2:-9240103 | None:intergenic |
| GCATGCTTGGATTAGTTGAA+AGG | 0.608826 | 4_2:+9245434 | Msa0587610:three_prime_UTR |
| CTCAGCAGGGATGATTTGAT+CGG | 0.613011 | 4_2:-9240066 | None:intergenic |
| GTCAGAGACGAGGTTGTGTG+AGG | 0.618139 | 4_2:+9241234 | Msa0587610:CDS |
| GTATCAGTTGAAGCCGATTG+GGG | 0.620930 | 4_2:+9241330 | Msa0587610:CDS |
| GGCGCGTGTGATTTGTGGAG+AGG | 0.623922 | 4_2:-9239961 | None:intergenic |
| GTGAAAAGATGACGCAGCGG+TGG | 0.624990 | 4_2:-9240009 | None:intergenic |
| GATTAATCATACGACTGGAA+AGG | 0.629279 | 4_2:+9241306 | Msa0587610:CDS |
| GGCATGATTCCTACTAGATG+AGG | 0.630898 | 4_2:+9241406 | Msa0587610:CDS |
| AACTGGTGAGGTGTATCCAT+TGG | 0.639904 | 4_2:+9241210 | Msa0587610:CDS |
| TTGTGGCGGAATCATATGCA+AGG | 0.644779 | 4_2:+9241164 | Msa0587610:CDS |
| AACCTCGTCTCTGACTCCAA+TGG | 0.652007 | 4_2:-9241226 | None:intergenic |
| GGAGTGTCGTACCGGAGATG+TGG | 0.658292 | 4_2:+9241255 | Msa0587610:CDS |
| AGCAGAACAACTCAAAACGA+TGG | 0.671545 | 4_2:+9239797 | Msa0587610:exon |
| AAATACTCTATCATCATCGG+TGG | 0.672742 | 4_2:+9240206 | Msa0587610:CDS |
| CTAAGGTAAGATGCTCAGCA+GGG | 0.679779 | 4_2:-9240079 | None:intergenic |
| ATCCATTGGAGTCAGAGACG+AGG | 0.688602 | 4_2:+9241224 | Msa0587610:CDS |
| TATCACCGACAACGTAGCAG+AGG | 0.693311 | 4_2:-9240034 | None:intergenic |
| TCGTACCGGAGATGTGGTGA+CGG | 0.731800 | 4_2:+9241261 | Msa0587610:CDS |
| GCCGTGAAAAGATGACGCAG+CGG | 0.738046 | 4_2:-9240012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTACATTCTTTTT+TGG | + | chr4_2:9242038-9242057 | Msa0587610:intron | 10.0% |
| !! | AAAATCTAAATTATTAAGTA+GGG | - | chr4_2:9243077-9243096 | None:intergenic | 10.0% |
| !! | TAAAATCTAAATTATTAAGT+AGG | - | chr4_2:9243078-9243097 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTTTTGGAATAA+AGG | - | chr4_2:9243142-9243161 | None:intergenic | 10.0% |
| !! | TTTATTCCAAAAATAAAAAA+AGG | + | chr4_2:9243141-9243160 | Msa0587610:intron | 10.0% |
| !!! | ATTATCACTGTTTTTTTTTT+TGG | - | chr4_2:9239755-9239774 | None:intergenic | 15.0% |
| !! | ACTGTTACATATTTAATATT+AGG | + | chr4_2:9241121-9241140 | Msa0587610:intron | 15.0% |
| !!! | TTTTTAATTGTTTGATACAA+TGG | + | chr4_2:9241462-9241481 | Msa0587610:intron | 15.0% |
| !! | TAATGTCATAAAATTAATTC+TGG | + | chr4_2:9241984-9242003 | Msa0587610:intron | 15.0% |
| !! | TTTATTAATTAAGCGTATAA+AGG | - | chr4_2:9242409-9242428 | None:intergenic | 15.0% |
| !!! | TGTAAATAAAATGAGTTTTT+AGG | + | chr4_2:9242629-9242648 | Msa0587610:intron | 15.0% |
| !!! | GTAAATAAAATGAGTTTTTA+GGG | + | chr4_2:9242630-9242649 | Msa0587610:intron | 15.0% |
| !!! | ATTTTAAACTTCATAAACTA+AGG | + | chr4_2:9243092-9243111 | Msa0587610:intron | 15.0% |
| !! | AAGAAATTAAAAAAAATGCA+CGG | + | chr4_2:9243468-9243487 | Msa0587610:intron | 15.0% |
| !! | ATAATTGTAACTCTTAAAAT+TGG | - | chr4_2:9243687-9243706 | None:intergenic | 15.0% |
| !!! | ACACTTTTTATTTGAAAAAT+AGG | + | chr4_2:9243842-9243861 | Msa0587610:intron | 15.0% |
| !!! | TTTTATACATAAATGCTTAT+AGG | + | chr4_2:9244417-9244436 | Msa0587610:intron | 15.0% |
| !! | TTTAGGAATATATAATGTTA+AGG | + | chr4_2:9245248-9245267 | Msa0587610:three_prime_UTR | 15.0% |
| !!! | TATTAAAACATTTGAAACTT+CGG | + | chr4_2:9245275-9245294 | Msa0587610:three_prime_UTR | 15.0% |
| !! | ACTTCAAATAGAATCAATTA+TGG | - | chr4_2:9240423-9240442 | None:intergenic | 20.0% |
| !!! | TTCTATTTGAAGTTAGAAAT+TGG | + | chr4_2:9240430-9240449 | Msa0587610:intron | 20.0% |
| !! | TTTACAATAATTAGTTACAC+TGG | - | chr4_2:9240988-9241007 | None:intergenic | 20.0% |
| !! | TAACTATTACATTTGATGTT+AGG | + | chr4_2:9241008-9241027 | Msa0587610:intron | 20.0% |
| !! | AATGGACAAAAATAAAAGTT+TGG | - | chr4_2:9242168-9242187 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGTTTTTCTCTAT+GGG | + | chr4_2:9242543-9242562 | Msa0587610:intron | 20.0% |
| !!! | TCAAAGTTTTTGTTTACATT+TGG | - | chr4_2:9242579-9242598 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGGAATAAAGG+AGG | - | chr4_2:9243139-9243158 | None:intergenic | 20.0% |
| !! | TTGTCTAAAAATATTGTTCA+GGG | + | chr4_2:9243203-9243222 | Msa0587610:intron | 20.0% |
| !!! | TACAGATTATTAGTTTTGAT+TGG | - | chr4_2:9243908-9243927 | None:intergenic | 20.0% |
| !!! | TCAATTTGTTTTCTGTTTTA+GGG | - | chr4_2:9243961-9243980 | None:intergenic | 20.0% |
| !! | TTCCATATCATATTTGATTA+TGG | + | chr4_2:9244484-9244503 | Msa0587610:intron | 20.0% |
| !! | ATCCATAATCAAATATGATA+TGG | - | chr4_2:9244489-9244508 | None:intergenic | 20.0% |
| !! | TGAATTGCATAATACTATTA+TGG | + | chr4_2:9244548-9244567 | Msa0587610:intron | 20.0% |
| !!! | TTCATTTTGTGAATCTAAAA+TGG | - | chr4_2:9244577-9244596 | None:intergenic | 20.0% |
| !! | TTAGATTCACAAAATGAATT+AGG | + | chr4_2:9244579-9244598 | Msa0587610:intron | 20.0% |
| !! | TTCTTATAGTTCATTCTATT+AGG | + | chr4_2:9244798-9244817 | Msa0587610:intron | 20.0% |
| !!! | ATCACTGTTTTTTTTTTTGG+CGG | - | chr4_2:9239752-9239771 | None:intergenic | 25.0% |
| ! | AAGGAATTGTATTGAGAAAA+GGG | - | chr4_2:9239924-9239943 | None:intergenic | 25.0% |
| ! | AGTTAGATTTAGTGTATGTT+TGG | + | chr4_2:9240307-9240326 | Msa0587610:intron | 25.0% |
| !!! | TGTTTGGTTTGATTTCTATA+CGG | + | chr4_2:9240323-9240342 | Msa0587610:intron | 25.0% |
| ! | TCAAATAGAATCAATTATGG+AGG | - | chr4_2:9240420-9240439 | None:intergenic | 25.0% |
| !!! | ATCAATTTTGGTTTCACTTT+TGG | - | chr4_2:9240757-9240776 | None:intergenic | 25.0% |
| !!! | AGTGAAACCAAAATTGATTT+TGG | + | chr4_2:9240759-9240778 | Msa0587610:intron | 25.0% |
| !! | TTCACTTCCAAAATCAATTT+TGG | - | chr4_2:9240769-9240788 | None:intergenic | 25.0% |
| ! | GTCTAACTTAAGTGTATATT+TGG | - | chr4_2:9240906-9240925 | None:intergenic | 25.0% |
| ! | GTTACAATAATTAGTTACAC+TGG | - | chr4_2:9241099-9241118 | None:intergenic | 25.0% |
| ! | TATTTAATATTAGGTGCTTC+TGG | + | chr4_2:9241130-9241149 | Msa0587610:intron | 25.0% |
| ! | TTAATTGTTTGATACAATGG+TGG | + | chr4_2:9241465-9241484 | Msa0587610:intron | 25.0% |
| !! | AGCAATTTTAGATGAGATTA+AGG | + | chr4_2:9241728-9241747 | Msa0587610:intron | 25.0% |
| !! | GCAATTTTAGATGAGATTAA+GGG | + | chr4_2:9241729-9241748 | Msa0587610:intron | 25.0% |
| ! | TTAAAATTCTGTTACAAGAG+TGG | + | chr4_2:9241826-9241845 | Msa0587610:intron | 25.0% |
| ! | TAAAATTCTGTTACAAGAGT+GGG | + | chr4_2:9241827-9241846 | Msa0587610:intron | 25.0% |
| !!! | ATGTGTAATATTGGTTTACA+CGG | + | chr4_2:9241885-9241904 | Msa0587610:intron | 25.0% |
| ! | AAGGAAGTAACAAATAGTAA+TGG | - | chr4_2:9242186-9242205 | None:intergenic | 25.0% |
| ! | AACACATTTAGCATTGTAAT+AGG | - | chr4_2:9242263-9242282 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTGTTTTTCTCTA+TGG | + | chr4_2:9242542-9242561 | Msa0587610:intron | 25.0% |
| !!! | CTTTTTTGTTTTTCTCTATG+GGG | + | chr4_2:9242544-9242563 | Msa0587610:intron | 25.0% |
| ! | GTAAATTGTGAAGATTCAAA+AGG | - | chr4_2:9242789-9242808 | None:intergenic | 25.0% |
| ! | TTGAATCTTCACAATTTACA+CGG | + | chr4_2:9242790-9242809 | Msa0587610:intron | 25.0% |
| !!! | ATGGAGCCTTTTTTTATTTT+TGG | - | chr4_2:9243150-9243169 | None:intergenic | 25.0% |
| ! | AAATAAAAAAAGGCTCCATT+TGG | + | chr4_2:9243151-9243170 | Msa0587610:intron | 25.0% |
| !! | TTTTCAAAAGCTTAACCAAA+TGG | - | chr4_2:9243169-9243188 | None:intergenic | 25.0% |
| !!! | TTTGGTTAAGCTTTTGAAAA+CGG | + | chr4_2:9243169-9243188 | Msa0587610:intron | 25.0% |
| ! | GTTGTCTAAAAATATTGTTC+AGG | + | chr4_2:9243202-9243221 | Msa0587610:intron | 25.0% |
| ! | ATTGTTCAGGGATATTTATT+AGG | + | chr4_2:9243215-9243234 | Msa0587610:intron | 25.0% |
| !!! | ACCAGAAGTTATTTTTTGTT+TGG | + | chr4_2:9243240-9243259 | Msa0587610:intron | 25.0% |
| ! | ACCAAACAAAAAATAACTTC+TGG | - | chr4_2:9243244-9243263 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTCAAAATT+TGG | - | chr4_2:9243372-9243391 | None:intergenic | 25.0% |
| ! | AAAGTAAACATTTCCATAGA+GGG | - | chr4_2:9243419-9243438 | None:intergenic | 25.0% |
| ! | TAACTCTTAAAATTGGAGTT+GGG | - | chr4_2:9243680-9243699 | None:intergenic | 25.0% |
| !!! | AATAAAAAGTGTTCCTTCTT+TGG | - | chr4_2:9243834-9243853 | None:intergenic | 25.0% |
| ! | ACTAATAATCTGTATAAGAC+AGG | + | chr4_2:9243914-9243933 | Msa0587610:intron | 25.0% |
| ! | CTAATAATCTGTATAAGACA+GGG | + | chr4_2:9243915-9243934 | Msa0587610:intron | 25.0% |
| !!! | GTCAATTTGTTTTCTGTTTT+AGG | - | chr4_2:9243962-9243981 | None:intergenic | 25.0% |
| ! | TACTGTTGAGATATAGATAT+AGG | - | chr4_2:9244052-9244071 | None:intergenic | 25.0% |
| ! | TGACTTATCAACAACTAATT+TGG | + | chr4_2:9244233-9244252 | Msa0587610:intron | 25.0% |
| ! | GACTTATCAACAACTAATTT+GGG | + | chr4_2:9244234-9244253 | Msa0587610:intron | 25.0% |
| ! | TATACATAAATGCTTATAGG+AGG | + | chr4_2:9244420-9244439 | Msa0587610:intron | 25.0% |
| ! | ATTAACCTGTTTACTTAAAC+AGG | + | chr4_2:9244454-9244473 | Msa0587610:intron | 25.0% |
| !! | TTGCAATAAGCAACAAATTT+TGG | - | chr4_2:9244610-9244629 | None:intergenic | 25.0% |
| !!! | AAATTTGTTGCTTATTGCAA+TGG | + | chr4_2:9244610-9244629 | Msa0587610:intron | 25.0% |
| ! | TAAGGATGAGTTATGTAATT+TGG | + | chr4_2:9245206-9245225 | Msa0587610:three_prime_UTR | 25.0% |
| !!! | TTAGAATTGTCGACTATTTT+AGG | + | chr4_2:9245231-9245250 | Msa0587610:three_prime_UTR | 25.0% |
| !! | GCATTTTACATTTGTCTATT+TGG | - | chr4_2:9245366-9245385 | None:intergenic | 25.0% |
| GAAGGAATTGTATTGAGAAA+AGG | - | chr4_2:9239925-9239944 | None:intergenic | 30.0% | |
| !!! | GTATTTCGTTTTAGTTTCAC+CGG | - | chr4_2:9240192-9240211 | None:intergenic | 30.0% |
| ACGAAATACTCTATCATCAT+CGG | + | chr4_2:9240203-9240222 | Msa0587610:CDS | 30.0% | |
| ATACGGATCAAAATTGAGTA+TGG | + | chr4_2:9240340-9240359 | Msa0587610:intron | 30.0% | |
| !! | AGAATTGTTTCTGACATGTT+TGG | + | chr4_2:9240369-9240388 | Msa0587610:intron | 30.0% |
| !!! | ACCATGTATGTTTAGTTTTG+CGG | + | chr4_2:9240487-9240506 | Msa0587610:intron | 30.0% |
| !! | AGTAGAATTGATTTTGTCTC+TGG | - | chr4_2:9240677-9240696 | None:intergenic | 30.0% |
| !! | ATTTTGGAAGTGAACTGATT+TGG | + | chr4_2:9240775-9240794 | Msa0587610:intron | 30.0% |
| ! | TGCGTTGACAAAAATTACTT+TGG | - | chr4_2:9240880-9240899 | None:intergenic | 30.0% |
| GTTAAGCTACTTGTTCTAAT+TGG | - | chr4_2:9240962-9240981 | None:intergenic | 30.0% | |
| !!! | CATATGCAAGGATTTTTTTC+CGG | + | chr4_2:9241176-9241195 | Msa0587610:CDS | 30.0% |
| CATGTGATCACATTATTGAT+AGG | + | chr4_2:9241616-9241635 | Msa0587610:intron | 30.0% | |
| TTATTGATAGGATCCTTTAC+TGG | + | chr4_2:9241628-9241647 | Msa0587610:intron | 30.0% | |
| AGTAATAGATTCTCACTGAA+TGG | - | chr4_2:9241784-9241803 | None:intergenic | 30.0% | |
| TCTCAATAGTGAATTCTCAT+TGG | + | chr4_2:9241858-9241877 | Msa0587610:intron | 30.0% | |
| ATTGGTTGCATGTGTAATAT+TGG | + | chr4_2:9241876-9241895 | Msa0587610:intron | 30.0% | |
| TCGTATTAGATACATGTCTT+TGG | + | chr4_2:9241927-9241946 | Msa0587610:intron | 30.0% | |
| CGTATTAGATACATGTCTTT+GGG | + | chr4_2:9241928-9241947 | Msa0587610:intron | 30.0% | |
| !! | TCTGGCTAAAATTTAGTTTG+AGG | + | chr4_2:9242002-9242021 | Msa0587610:intron | 30.0% |
| !! | TAAAATTTAGTTTGAGGTGG+TGG | + | chr4_2:9242008-9242027 | Msa0587610:intron | 30.0% |
| CTGCTTCATTTCATTATTCT+TGG | + | chr4_2:9242098-9242117 | Msa0587610:intron | 30.0% | |
| AACAATAGTATCATGATTGG+AGG | - | chr4_2:9242238-9242257 | None:intergenic | 30.0% | |
| GAGAACAATAGTATCATGAT+TGG | - | chr4_2:9242241-9242260 | None:intergenic | 30.0% | |
| TTTCTACCAACATGATAACT+AGG | + | chr4_2:9242283-9242302 | Msa0587610:intron | 30.0% | |
| !! | TTTTTCACTTTTCACTGAGT+TGG | + | chr4_2:9242482-9242501 | Msa0587610:intron | 30.0% |
| TGAATCTTCACAATTTACAC+GGG | + | chr4_2:9242791-9242810 | Msa0587610:intron | 30.0% | |
| GACATGTTGCTATGAAAATA+TGG | + | chr4_2:9242831-9242850 | Msa0587610:intron | 30.0% | |
| TATGAAAGTTTACAACAGCT+AGG | - | chr4_2:9242881-9242900 | None:intergenic | 30.0% | |
| ! | ACTTTCATATTTGTTGCAGT+AGG | + | chr4_2:9242892-9242911 | Msa0587610:intron | 30.0% |
| GTCTCTCATTATATGAGATA+TGG | + | chr4_2:9243276-9243295 | Msa0587610:intron | 30.0% | |
| ACCATCTCAAAATTTGGATT+GGG | - | chr4_2:9243366-9243385 | None:intergenic | 30.0% | |
| TACCATCTCAAAATTTGGAT+TGG | - | chr4_2:9243367-9243386 | None:intergenic | 30.0% | |
| CAAAGTAAACATTTCCATAG+AGG | - | chr4_2:9243420-9243439 | None:intergenic | 30.0% | |
| GTAACTCTTAAAATTGGAGT+TGG | - | chr4_2:9243681-9243700 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTGTTTGTTTAGT+TGG | - | chr4_2:9243987-9244006 | None:intergenic | 30.0% |
| TATAGGAGAATTAGTCAGTT+AGG | - | chr4_2:9244035-9244054 | None:intergenic | 30.0% | |
| TAGGAGAATCCATAAAATTC+TGG | + | chr4_2:9244086-9244105 | Msa0587610:intron | 30.0% | |
| GTATTCTGAGTTTCATTCTT+AGG | - | chr4_2:9244171-9244190 | None:intergenic | 30.0% | |
| TAAGCTAACTTTACCAACTA+CGG | + | chr4_2:9244198-9244217 | Msa0587610:intron | 30.0% | |
| AATGACCTGTTTAAGTAAAC+AGG | - | chr4_2:9244462-9244481 | None:intergenic | 30.0% | |
| CAGCTGCTATATTTATTAGT+GGG | + | chr4_2:9244656-9244675 | Msa0587610:intron | 30.0% | |
| TTGACTGATGAAAAGTAGTT+TGG | + | chr4_2:9244744-9244763 | Msa0587610:intron | 30.0% | |
| AAAAGCAACTTCACAATCTA+TGG | - | chr4_2:9244856-9244875 | None:intergenic | 30.0% | |
| GATATTCATCAGGATTGGAA+GGG | - | chr4_2:9240106-9240125 | None:intergenic | 35.0% | |
| TGATATTCATCAGGATTGGA+AGG | - | chr4_2:9240107-9240126 | None:intergenic | 35.0% | |
| CTTCTGATATTCATCAGGAT+TGG | - | chr4_2:9240111-9240130 | None:intergenic | 35.0% | |
| !! | CTTGGTTCTTTTGCCTTAAT+CGG | + | chr4_2:9240131-9240150 | Msa0587610:CDS | 35.0% |
| AAATACTCTATCATCATCGG+TGG | + | chr4_2:9240206-9240225 | Msa0587610:CDS | 35.0% | |
| TATCAAATACCTAATGCGAC+AGG | - | chr4_2:9240269-9240288 | None:intergenic | 35.0% | |
| ACCGCAAAACTAAACATACA+TGG | - | chr4_2:9240491-9240510 | None:intergenic | 35.0% | |
| AGAATCGATGTTGTCATGTT+TGG | - | chr4_2:9240709-9240728 | None:intergenic | 35.0% | |
| !! | TCTACACCTCTAGAATCATT+TGG | + | chr4_2:9240726-9240745 | Msa0587610:intron | 35.0% |
| !! | CTTTGGAGCGATTTATGTTT+GGG | - | chr4_2:9240863-9240882 | None:intergenic | 35.0% |
| !! | ACTTTGGAGCGATTTATGTT+TGG | - | chr4_2:9240864-9240883 | None:intergenic | 35.0% |
| GCATGTTGTATATATTCCAG+CGG | - | chr4_2:9241042-9241061 | None:intergenic | 35.0% | |
| ! | GCTATGTTACTTGCTCTAAT+TGG | - | chr4_2:9241073-9241092 | None:intergenic | 35.0% |
| GATTAATCATACGACTGGAA+AGG | + | chr4_2:9241306-9241325 | Msa0587610:CDS | 35.0% | |
| AACACAATACCTCATCTAGT+AGG | - | chr4_2:9241418-9241437 | None:intergenic | 35.0% | |
| TTGTTTGATACAATGGTGGT+AGG | + | chr4_2:9241469-9241488 | Msa0587610:intron | 35.0% | |
| ACAATGGTGGTAGGAAAATT+AGG | + | chr4_2:9241478-9241497 | Msa0587610:intron | 35.0% | |
| CAATGGTGGTAGGAAAATTA+GGG | + | chr4_2:9241479-9241498 | Msa0587610:intron | 35.0% | |
| ACTCACAATGAGTAGCAAAA+AGG | - | chr4_2:9241654-9241673 | None:intergenic | 35.0% | |
| AATAGATTCTCACTGAATGG+TGG | - | chr4_2:9241781-9241800 | None:intergenic | 35.0% | |
| ATTAGATACATGTCTTTGGG+CGG | + | chr4_2:9241931-9241950 | Msa0587610:intron | 35.0% | |
| !! | GGCTAAAATTTAGTTTGAGG+TGG | + | chr4_2:9242005-9242024 | Msa0587610:intron | 35.0% |
| !! | CACTTCTAAAGTGAGTTTCA+AGG | - | chr4_2:9242205-9242224 | None:intergenic | 35.0% |
| GTTAGACCTAGTTATCATGT+TGG | - | chr4_2:9242292-9242311 | None:intergenic | 35.0% | |
| !!! | TAAAGGCTTTTGATTTGCGT+CGG | - | chr4_2:9242392-9242411 | None:intergenic | 35.0% |
| AACACTGCATGCTTTCTAAA+AGG | - | chr4_2:9242451-9242470 | None:intergenic | 35.0% | |
| ! | AGGGTATCTGAATAGTGAAA+TGG | + | chr4_2:9242649-9242668 | Msa0587610:intron | 35.0% |
| TGAAATGGTTAACTAGCGAA+AGG | + | chr4_2:9242664-9242683 | Msa0587610:intron | 35.0% | |
| TTAACTAGCGAAAGGATGAA+TGG | + | chr4_2:9242672-9242691 | Msa0587610:intron | 35.0% | |
| TAGCTGACATAGAGAAGAAT+TGG | + | chr4_2:9242949-9242968 | Msa0587610:intron | 35.0% | |
| CACATCTTTCTACAGATCTA+TGG | + | chr4_2:9242975-9242994 | Msa0587610:intron | 35.0% | |
| TGGAGAATTAGTAAACTGCT+TGG | + | chr4_2:9242995-9243014 | Msa0587610:intron | 35.0% | |
| TTATTAAGTAGGGATACTCC+AGG | - | chr4_2:9243067-9243086 | None:intergenic | 35.0% | |
| AAACTAAGGTTCCGTTTAGT+TGG | + | chr4_2:9243106-9243125 | Msa0587610:intron | 35.0% | |
| !! | ACCCAATCCAAATTTTGAGA+TGG | + | chr4_2:9243362-9243381 | Msa0587610:intron | 35.0% |
| ATGGCATATCTTATCCAATG+TGG | - | chr4_2:9243591-9243610 | None:intergenic | 35.0% | |
| CCACTTATAAATAGATGGCA+TGG | - | chr4_2:9243610-9243629 | None:intergenic | 35.0% | |
| CCATGCCATCTATTTATAAG+TGG | + | chr4_2:9243607-9243626 | Msa0587610:intron | 35.0% | |
| TGCCATCTATTTATAAGTGG+TGG | + | chr4_2:9243610-9243629 | Msa0587610:intron | 35.0% | |
| GCCATCTATTTATAAGTGGT+GGG | + | chr4_2:9243611-9243630 | Msa0587610:intron | 35.0% | |
| ACCCACCACTTATAAATAGA+TGG | - | chr4_2:9243615-9243634 | None:intergenic | 35.0% | |
| !! | CCATATTGGTTCTCACATAT+AGG | - | chr4_2:9243732-9243751 | None:intergenic | 35.0% |
| CCTATATGTGAGAACCAATA+TGG | + | chr4_2:9243729-9243748 | Msa0587610:intron | 35.0% | |
| TATGTGAGAACCAATATGGA+TGG | + | chr4_2:9243733-9243752 | Msa0587610:intron | 35.0% | |
| GTTATTCATGCCATCCATAT+TGG | - | chr4_2:9243746-9243765 | None:intergenic | 35.0% | |
| TGGCATGAATAACAAGAGAA+TGG | + | chr4_2:9243753-9243772 | Msa0587610:intron | 35.0% | |
| !! | TTCTTGATAGTGTAGCTGTT+AGG | + | chr4_2:9243791-9243810 | Msa0587610:intron | 35.0% |
| !! | TTCTTTGGAATCCGATTCTT+GGG | - | chr4_2:9243819-9243838 | None:intergenic | 35.0% |
| ! | AGAGACACTCCAGAATTTTA+TGG | - | chr4_2:9244098-9244117 | None:intergenic | 35.0% |
| ! | TAGGCTAGGATGATTTGTAA+TGG | - | chr4_2:9244152-9244171 | None:intergenic | 35.0% |
| TGGATTTGAATCTGTGCATT+TGG | + | chr4_2:9244504-9244523 | Msa0587610:intron | 35.0% | |
| ! | TTGCTTATTGCAATGGCTTT+TGG | + | chr4_2:9244617-9244636 | Msa0587610:intron | 35.0% |
| GCAGCTGCTATATTTATTAG+TGG | + | chr4_2:9244655-9244674 | Msa0587610:intron | 35.0% | |
| AATGTGTACTGCAATTGAAC+AGG | - | chr4_2:9244682-9244701 | None:intergenic | 35.0% | |
| ! | ATTGCAGTACACATTTTCTC+AGG | + | chr4_2:9244687-9244706 | Msa0587610:intron | 35.0% |
| GCAAATATAAATGAACAGCC+AGG | - | chr4_2:9245015-9245034 | None:intergenic | 35.0% | |
| ATCTACTGCTGCATGTTTAA+TGG | - | chr4_2:9245112-9245131 | None:intergenic | 35.0% | |
| ! | AGAATTGTTGCCTGTTTTCA+CGG | + | chr4_2:9245149-9245168 | Msa0587610:three_prime_UTR | 35.0% |
| TTAGATGTCCAAATGCTTCT+AGG | + | chr4_2:9245400-9245419 | Msa0587610:three_prime_UTR | 35.0% | |
| !! | TCTATGTTCCTAGAAGCATT+TGG | - | chr4_2:9245411-9245430 | None:intergenic | 35.0% |
| AGCAGAACAACTCAAAACGA+TGG | + | chr4_2:9239797-9239816 | Msa0587610:exon | 40.0% | |
| GAAAGTTAGGGTTTGTGGAA+TGG | - | chr4_2:9239844-9239863 | None:intergenic | 40.0% | |
| GTTAGAGGGAGTGAAAGTTA+GGG | - | chr4_2:9239856-9239875 | None:intergenic | 40.0% | |
| TGTTAGAGGGAGTGAAAGTT+AGG | - | chr4_2:9239857-9239876 | None:intergenic | 40.0% | |
| !! | GAGAGTGAGAGTTTGTTAGA+GGG | - | chr4_2:9239870-9239889 | None:intergenic | 40.0% |
| !! | AGAGAGTGAGAGTTTGTTAG+AGG | - | chr4_2:9239871-9239890 | None:intergenic | 40.0% |
| CCAAGCTTCTGATATTCATC+AGG | - | chr4_2:9240116-9240135 | None:intergenic | 40.0% | |
| CCTGATGAATATCAGAAGCT+TGG | + | chr4_2:9240113-9240132 | Msa0587610:CDS | 40.0% | |
| AATCGTACAGTGTACGAATC+AGG | - | chr4_2:9240161-9240180 | None:intergenic | 40.0% | |
| ACTGTACGATTCGTTGAATC+CGG | + | chr4_2:9240170-9240189 | Msa0587610:CDS | 40.0% | |
| ! | ATCATCGGTGGTGCTAATTT+CGG | + | chr4_2:9240218-9240237 | Msa0587610:CDS | 40.0% |
| TGCGGTGACAAGAATTGATT+TGG | + | chr4_2:9240505-9240524 | Msa0587610:intron | 40.0% | |
| GAGAAGCCAAATGATTCTAG+AGG | - | chr4_2:9240735-9240754 | None:intergenic | 40.0% | |
| !! | GTGAACTGATTTGGCATGTT+TGG | + | chr4_2:9240784-9240803 | Msa0587610:intron | 40.0% |
| !!! | GATTTTTTTCCGGAACTCTG+TGG | + | chr4_2:9241186-9241205 | Msa0587610:CDS | 40.0% |
| CGGTTGATTAATCATACGAC+TGG | + | chr4_2:9241301-9241320 | Msa0587610:CDS | 40.0% | |
| AGTATCAGTTGAAGCCGATT+GGG | + | chr4_2:9241329-9241348 | Msa0587610:CDS | 40.0% | |
| TTTGCTTATGCTAGGAAGAC+TGG | + | chr4_2:9241385-9241404 | Msa0587610:CDS | 40.0% | |
| AGTAGCAAAAAGGCCAGTAA+AGG | - | chr4_2:9241644-9241663 | None:intergenic | 40.0% | |
| TTAGATACATGTCTTTGGGC+GGG | + | chr4_2:9241932-9241951 | Msa0587610:intron | 40.0% | |
| TATCATGATTGGAGGAATGC+AGG | - | chr4_2:9242230-9242249 | None:intergenic | 40.0% | |
| ! | GTTGGTTCTTTGCAGATAGA+AGG | + | chr4_2:9242500-9242519 | Msa0587610:intron | 40.0% |
| TTGAAAATCCTGTGAAACGC+AGG | + | chr4_2:9242720-9242739 | Msa0587610:intron | 40.0% | |
| TGAAAATCCTGTGAAACGCA+GGG | + | chr4_2:9242721-9242740 | Msa0587610:intron | 40.0% | |
| AATTTACACGGGTCAAGTCA+AGG | + | chr4_2:9242802-9242821 | Msa0587610:intron | 40.0% | |
| CTTGGAAACATACAGATCAG+AGG | + | chr4_2:9243013-9243032 | Msa0587610:intron | 40.0% | |
| TCAGAGGCTAATGAGTAAAC+TGG | + | chr4_2:9243029-9243048 | Msa0587610:intron | 40.0% | |
| GAGTAAACTGGCTAAAGACA+TGG | + | chr4_2:9243041-9243060 | Msa0587610:intron | 40.0% | |
| GTAGTTCTTACCTTACAAGC+CGG | + | chr4_2:9243319-9243338 | Msa0587610:intron | 40.0% | |
| CAACTCAATCCTTACGAATC+CGG | - | chr4_2:9243341-9243360 | None:intergenic | 40.0% | |
| AAAGCCTATCCAAGATCCAT+TGG | + | chr4_2:9243389-9243408 | Msa0587610:intron | 40.0% | |
| AAGCCTATCCAAGATCCATT+GGG | + | chr4_2:9243390-9243409 | Msa0587610:intron | 40.0% | |
| TATCCCAATGGATCTTGGAT+AGG | - | chr4_2:9243396-9243415 | None:intergenic | 40.0% | |
| TGTGTTGAGAAGTTCCACAT+TGG | + | chr4_2:9243574-9243593 | Msa0587610:intron | 40.0% | |
| CCTTACAAAATCAGCTCGTA+AGG | - | chr4_2:9243646-9243665 | None:intergenic | 40.0% | |
| !! | CCTTACGAGCTGATTTTGTA+AGG | + | chr4_2:9243643-9243662 | Msa0587610:intron | 40.0% |
| !! | CTTCTTTGGAATCCGATTCT+TGG | - | chr4_2:9243820-9243839 | None:intergenic | 40.0% |
| CAAGAATCGGATTCCAAAGA+AGG | + | chr4_2:9243818-9243837 | Msa0587610:intron | 40.0% | |
| ! | ATTGGTTTCACAACCAGTGT+TGG | - | chr4_2:9243890-9243909 | None:intergenic | 40.0% |
| ! | AGGATGATTTGTAATGGAGG+AGG | - | chr4_2:9244146-9244165 | None:intergenic | 40.0% |
| ! | GCTAGGATGATTTGTAATGG+AGG | - | chr4_2:9244149-9244168 | None:intergenic | 40.0% |
| CTGAGTTTCATTCTTAGGCT+AGG | - | chr4_2:9244166-9244185 | None:intergenic | 40.0% | |
| !! | TTACCAACTACGGTTGCTTT+TGG | + | chr4_2:9244208-9244227 | Msa0587610:intron | 40.0% |
| AATCCAAAAGCAACCGTAGT+TGG | - | chr4_2:9244214-9244233 | None:intergenic | 40.0% | |
| ACTAATTTGGGCTTGTCTAC+TGG | + | chr4_2:9244246-9244265 | Msa0587610:intron | 40.0% | |
| CGCTATAAGCTATACTTGAG+AGG | - | chr4_2:9244351-9244370 | None:intergenic | 40.0% | |
| CAATTCAGTGCCTAATCTCA+GGG | - | chr4_2:9244535-9244554 | None:intergenic | 40.0% | |
| ! | TATTGCAATGGCTTTTGGAC+TGG | + | chr4_2:9244622-9244641 | Msa0587610:intron | 40.0% |
| ! | ATTGCAATGGCTTTTGGACT+GGG | + | chr4_2:9244623-9244642 | Msa0587610:intron | 40.0% |
| ATTGTTGTCAGCACTCAACA+AGG | + | chr4_2:9244899-9244918 | Msa0587610:intron | 40.0% | |
| GTTGAAGTTATTGTGCCGAA+TGG | + | chr4_2:9244954-9244973 | Msa0587610:intron | 40.0% | |
| TTTCTTCAAACTTGTGTGCC+TGG | + | chr4_2:9244994-9245013 | Msa0587610:intron | 40.0% | |
| TGAATGGAATCCGTGAAAAC+AGG | - | chr4_2:9245162-9245181 | None:intergenic | 40.0% | |
| !! | CTTGTCATGCAGCTTTGTTA+AGG | + | chr4_2:9245188-9245207 | Msa0587610:three_prime_UTR | 40.0% |
| !! | GCATGCTTGGATTAGTTGAA+AGG | + | chr4_2:9245434-9245453 | Msa0587610:three_prime_UTR | 40.0% |
| TGGCCATCCGATTAAAAGAT+CGG | + | chr4_2:9245483-9245502 | Msa0587610:three_prime_UTR | 40.0% | |
| ! | CATCCGATCTTTTAATCGGA+TGG | - | chr4_2:9245489-9245508 | None:intergenic | 40.0% |
| ! | GGGTCATCCGATCTTTTAAT+CGG | - | chr4_2:9245493-9245512 | None:intergenic | 40.0% |
| GGAGTGAAAGTTAGGGTTTG+TGG | - | chr4_2:9239849-9239868 | None:intergenic | 45.0% | |
| CTCAGCAGGGATGATTTGAT+CGG | - | chr4_2:9240069-9240088 | None:intergenic | 45.0% | |
| CTAAGGTAAGATGCTCAGCA+GGG | - | chr4_2:9240082-9240101 | None:intergenic | 45.0% | |
| ACTAAGGTAAGATGCTCAGC+AGG | - | chr4_2:9240083-9240102 | None:intergenic | 45.0% | |
| ATCAGGATTGGAAGGGACTA+AGG | - | chr4_2:9240099-9240118 | None:intergenic | 45.0% | |
| CGAATCAGGAAGTCCGATTA+AGG | - | chr4_2:9240147-9240166 | None:intergenic | 45.0% | |
| ! | TTGTGGCGGAATCATATGCA+AGG | + | chr4_2:9241164-9241183 | Msa0587610:CDS | 45.0% |
| AACTGGTGAGGTGTATCCAT+TGG | + | chr4_2:9241210-9241229 | Msa0587610:CDS | 45.0% | |
| GAGTATCAGTTGAAGCCGAT+TGG | + | chr4_2:9241328-9241347 | Msa0587610:CDS | 45.0% | |
| GTATCAGTTGAAGCCGATTG+GGG | + | chr4_2:9241330-9241349 | Msa0587610:CDS | 45.0% | |
| GTGGGATCTTTGCTTATGCT+AGG | + | chr4_2:9241377-9241396 | Msa0587610:CDS | 45.0% | |
| GGCATGATTCCTACTAGATG+AGG | + | chr4_2:9241406-9241425 | Msa0587610:CDS | 45.0% | |
| ! | GAGATTAAGGGCATATGCTG+TGG | + | chr4_2:9241741-9241760 | Msa0587610:intron | 45.0% |
| ACTAGCGAAAGGATGAATGG+TGG | + | chr4_2:9242675-9242694 | Msa0587610:intron | 45.0% | |
| ! | AAACGCAGGGACTGTTTTCT+TGG | + | chr4_2:9242734-9242753 | Msa0587610:intron | 45.0% |
| ! | AACGCAGGGACTGTTTTCTT+GGG | + | chr4_2:9242735-9242754 | Msa0587610:intron | 45.0% |
| TATGAAGCCACAACCTATGC+GGG | - | chr4_2:9242766-9242785 | None:intergenic | 45.0% | |
| GTATGAAGCCACAACCTATG+CGG | - | chr4_2:9242767-9242786 | None:intergenic | 45.0% | |
| ACAACAGCTAGGTTTGCAGT+TGG | - | chr4_2:9242870-9242889 | None:intergenic | 45.0% | |
| ! | AGGTTCCGTTTAGTTGGCTT+AGG | + | chr4_2:9243112-9243131 | Msa0587610:intron | 45.0% |
| GAGGACCTAAGCCAACTAAA+CGG | - | chr4_2:9243120-9243139 | None:intergenic | 45.0% | |
| CGGATTCGTAAGGATTGAGT+TGG | + | chr4_2:9243339-9243358 | Msa0587610:intron | 45.0% | |
| ATCCATTGGGATACCCTCTA+TGG | + | chr4_2:9243403-9243422 | Msa0587610:intron | 45.0% | |
| !! | TTCCATAGAGGGTATCCCAA+TGG | - | chr4_2:9243408-9243427 | None:intergenic | 45.0% |
| AGATAGAGAGAAGTGAGTGC+AGG | + | chr4_2:9243495-9243514 | Msa0587610:intron | 45.0% | |
| GATAGAGAGAAGTGAGTGCA+GGG | + | chr4_2:9243496-9243515 | Msa0587610:intron | 45.0% | |
| ! | ACGCTCTAGATGTCTTGTCT+TGG | + | chr4_2:9243539-9243558 | Msa0587610:intron | 45.0% |
| ! | CGCTCTAGATGTCTTGTCTT+GGG | + | chr4_2:9243540-9243559 | Msa0587610:intron | 45.0% |
| GCTGTTAGGAACCCAAGAAT+CGG | + | chr4_2:9243805-9243824 | Msa0587610:intron | 45.0% | |
| CAGTAGCAGAGTTGTCAGTT+AGG | + | chr4_2:9244067-9244086 | Msa0587610:intron | 45.0% | |
| AGTGTCTCTTGAGAACTGCA+AGG | + | chr4_2:9244109-9244128 | Msa0587610:intron | 45.0% | |
| CTACTGGCATAAGCACTTCT+CGG | + | chr4_2:9244262-9244281 | Msa0587610:intron | 45.0% | |
| TTTGGCTACACCCTGAGATT+AGG | + | chr4_2:9244522-9244541 | Msa0587610:intron | 45.0% | |
| GCAATTCAGTGCCTAATCTC+AGG | - | chr4_2:9244536-9244555 | None:intergenic | 45.0% | |
| CCAAGAACATGCATGCCATT+CGG | - | chr4_2:9244972-9244991 | None:intergenic | 45.0% | |
| ACATGCAGCAGTAGATGCTT+TGG | + | chr4_2:9245116-9245135 | Msa0587610:intron | 45.0% | |
| CATGCAGCAGTAGATGCTTT+GGG | + | chr4_2:9245117-9245136 | Msa0587610:intron | 45.0% | |
| !! | GCATGACAAGAGCATCTGAA+TGG | - | chr4_2:9245178-9245197 | None:intergenic | 45.0% |
| ! | GGAACATAGAAGTGCATGCT+TGG | + | chr4_2:9245421-9245440 | Msa0587610:three_prime_UTR | 45.0% |
| CACTGCACTAAGCACATTTG+TGG | + | chr4_2:9245463-9245482 | Msa0587610:three_prime_UTR | 45.0% | |
| !!! | TTAGTTATATATTTTTTTTT+TGG | + | chr4_2:9245059-9245078 | Msa0587610:intron | 5.0% |
| !!! | GGTGGTGGTGATGGTTTTGA+AGG | - | chr4_2:9239943-9239962 | None:intergenic | 50.0% |
| ! | TGTGATTTGTGGAGAGGTGG+TGG | - | chr4_2:9239958-9239977 | None:intergenic | 50.0% |
| ! | ACCGCTGCGTCATCTTTTCA+CGG | + | chr4_2:9240011-9240030 | Msa0587610:CDS | 50.0% |
| TATCACCGACAACGTAGCAG+AGG | - | chr4_2:9240037-9240056 | None:intergenic | 50.0% | |
| ! | GGTGGTGCTAATTTCGGATG+CGG | + | chr4_2:9240224-9240243 | Msa0587610:CDS | 50.0% |
| ATCCATTGGAGTCAGAGACG+AGG | + | chr4_2:9241224-9241243 | Msa0587610:CDS | 50.0% | |
| AACCTCGTCTCTGACTCCAA+TGG | - | chr4_2:9241229-9241248 | None:intergenic | 50.0% | |
| !! | TTGTGTGAGGAGTGTCGTAC+CGG | + | chr4_2:9241247-9241266 | Msa0587610:CDS | 50.0% |
| CGGTTGAGCTTGAGGAGAAT+CGG | + | chr4_2:9241281-9241300 | Msa0587610:CDS | 50.0% | |
| TTGGGCGGGCATATGGTAAT+TGG | + | chr4_2:9241946-9241965 | Msa0587610:intron | 50.0% | |
| AAACAGTCCCTGCGTTTCAC+AGG | - | chr4_2:9242731-9242750 | None:intergenic | 50.0% | |
| ! | ACGCAGGGACTGTTTTCTTG+GGG | + | chr4_2:9242736-9242755 | Msa0587610:intron | 50.0% |
| AACTGGCTAAAGACATGGCC+TGG | + | chr4_2:9243046-9243065 | Msa0587610:intron | 50.0% | |
| ! | CCTTACGAATCCGGCTTGTA+AGG | - | chr4_2:9243332-9243351 | None:intergenic | 50.0% |
| CCTTACAAGCCGGATTCGTA+AGG | + | chr4_2:9243329-9243348 | Msa0587610:intron | 50.0% | |
| !! | GAGGGTATCCCAATGGATCT+TGG | - | chr4_2:9243401-9243420 | None:intergenic | 50.0% |
| GAAGTGAGTGCAGGGAATCT+CGG | + | chr4_2:9243504-9243523 | Msa0587610:intron | 50.0% | |
| AAGTGAGTGCAGGGAATCTC+GGG | + | chr4_2:9243505-9243524 | Msa0587610:intron | 50.0% | |
| GATGTCTTGTCTTGGGTGTG+AGG | + | chr4_2:9243547-9243566 | Msa0587610:intron | 50.0% | |
| ! | AAGCACTTCTCGGAGTGTCT+AGG | + | chr4_2:9244272-9244291 | Msa0587610:intron | 50.0% |
| CCGAATGGCATGCATGTTCT+TGG | + | chr4_2:9244969-9244988 | Msa0587610:intron | 50.0% | |
| ! | TTGTGGAGAGGTGGTGGTGA+TGG | - | chr4_2:9239952-9239971 | None:intergenic | 55.0% |
| ! | GCGTGTGATTTGTGGAGAGG+TGG | - | chr4_2:9239961-9239980 | None:intergenic | 55.0% |
| AAAAGATGACGCAGCGGTGG+TGG | - | chr4_2:9240009-9240028 | None:intergenic | 55.0% | |
| GTGAAAAGATGACGCAGCGG+TGG | - | chr4_2:9240012-9240031 | None:intergenic | 55.0% | |
| GCCGTGAAAAGATGACGCAG+CGG | - | chr4_2:9240015-9240034 | None:intergenic | 55.0% | |
| GAACACGCTCCTGTCGCATT+AGG | + | chr4_2:9240257-9240276 | Msa0587610:CDS | 55.0% | |
| ATGTTAGGTGCTTCTGCCGC+TGG | + | chr4_2:9241023-9241042 | Msa0587610:intron | 55.0% | |
| !! | TTCTGGTGCTGCTGCTGTTG+TGG | + | chr4_2:9241147-9241166 | Msa0587610:CDS | 55.0% |
| TTCCGGAACTCTGTGGCAAC+TGG | + | chr4_2:9241193-9241212 | Msa0587610:CDS | 55.0% | |
| CACCAGTTGCCACAGAGTTC+CGG | - | chr4_2:9241198-9241217 | None:intergenic | 55.0% | |
| GAACTCTGTGGCAACTGGTG+AGG | + | chr4_2:9241198-9241217 | Msa0587610:CDS | 55.0% | |
| GTCAGAGACGAGGTTGTGTG+AGG | + | chr4_2:9241234-9241253 | Msa0587610:CDS | 55.0% | |
| TCGTACCGGAGATGTGGTGA+CGG | + | chr4_2:9241261-9241280 | Msa0587610:CDS | 55.0% | |
| CTCAACCGTCACCACATCTC+CGG | - | chr4_2:9241269-9241288 | None:intergenic | 55.0% | |
| !! | TGTGGTGACGGTTGAGCTTG+AGG | + | chr4_2:9241273-9241292 | Msa0587610:CDS | 55.0% |
| TTGAAGCCGATTGGGGATGC+TGG | + | chr4_2:9241337-9241356 | Msa0587610:CDS | 55.0% | |
| ACTGGACCAGCATCCCCAAT+CGG | - | chr4_2:9241346-9241365 | None:intergenic | 55.0% | |
| GGATGCTGGTCCAGTGATTG+AGG | + | chr4_2:9241351-9241370 | Msa0587610:CDS | 55.0% | |
| GTCCAGTGATTGAGGCTGGT+GGG | + | chr4_2:9241359-9241378 | Msa0587610:CDS | 55.0% | |
| ATCCCACCAGCCTCAATCAC+TGG | - | chr4_2:9241364-9241383 | None:intergenic | 55.0% | |
| CATGTCTTTGGGCGGGCATA+TGG | + | chr4_2:9241939-9241958 | Msa0587610:intron | 55.0% | |
| TTCTTGGGGAAGACCCGCAT+AGG | + | chr4_2:9242750-9242769 | Msa0587610:intron | 55.0% | |
| GCAGGGAATCTCGGGCTATT+CGG | + | chr4_2:9243513-9243532 | Msa0587610:intron | 55.0% | |
| GAGAGCAAGCTCTCCAACAC+TGG | + | chr4_2:9243874-9243893 | Msa0587610:intron | 55.0% | |
| ! | GGCGCGTGTGATTTGTGGAG+AGG | - | chr4_2:9239964-9239983 | None:intergenic | 60.0% |
| GCTTGGGCGCGTGTGATTTG+TGG | - | chr4_2:9239969-9239988 | None:intergenic | 60.0% | |
| CACGGCCTCTGCTACGTTGT+CGG | + | chr4_2:9240029-9240048 | Msa0587610:CDS | 60.0% | |
| !! | TGGTGCTGCTGCTGTTGTGG+CGG | + | chr4_2:9241150-9241169 | Msa0587610:CDS | 60.0% |
| !! | GGAGTGTCGTACCGGAGATG+TGG | + | chr4_2:9241255-9241274 | Msa0587610:CDS | 60.0% |
| GCTGGTCCAGTGATTGAGGC+TGG | + | chr4_2:9241355-9241374 | Msa0587610:CDS | 60.0% | |
| GGTCCAGTGATTGAGGCTGG+TGG | + | chr4_2:9241358-9241377 | Msa0587610:CDS | 60.0% | |
| GGGAAGACCCGCATAGGTTG+TGG | + | chr4_2:9242756-9242775 | Msa0587610:intron | 60.0% | |
| GACGGGAGAAGGTGGCGCTT+GGG | - | chr4_2:9239985-9240004 | None:intergenic | 65.0% | |
| TGACGGGAGAAGGTGGCGCT+TGG | - | chr4_2:9239986-9240005 | None:intergenic | 65.0% | |
| !! | GTGGTGGTGACGGGAGAAGG+TGG | - | chr4_2:9239993-9240012 | None:intergenic | 65.0% |
| ! | TGACGCAGCGGTGGTGGTGA+CGG | - | chr4_2:9240003-9240022 | None:intergenic | 65.0% |
| !! | GCGGTGGTGGTGACGGGAGA+AGG | - | chr4_2:9239996-9240015 | None:intergenic | 70.0% |
| ! | GACGCAGCGGTGGTGGTGAC+GGG | - | chr4_2:9240002-9240021 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 9239734 | 9245512 | 9239734 | ID=Msa0587610;Name=Msa0587610 |
| chr4_2 | mRNA | 9239734 | 9245512 | 9239734 | ID=Msa0587610-mRNA-1;Parent=Msa0587610;Name=Msa0587610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|0.5|0.33|3|390|248 |
| chr4_2 | exon | 9239734 | 9240278 | 9239734 | ID=Msa0587610-mRNA-1:exon:2517;Parent=Msa0587610-mRNA-1 |
| chr4_2 | exon | 9241143 | 9241427 | 9241143 | ID=Msa0587610-mRNA-1:exon:2518;Parent=Msa0587610-mRNA-1 |
| chr4_2 | exon | 9245124 | 9245512 | 9245124 | ID=Msa0587610-mRNA-1:exon:2519;Parent=Msa0587610-mRNA-1 |
| chr4_2 | five_prime_UTR | 9239734 | 9239815 | 9239734 | ID=Msa0587610-mRNA-1:five_prime_utr;Parent=Msa0587610-mRNA-1 |
| chr4_2 | CDS | 9239816 | 9240278 | 9239816 | ID=Msa0587610-mRNA-1:cds;Parent=Msa0587610-mRNA-1 |
| chr4_2 | CDS | 9241143 | 9241426 | 9241143 | ID=Msa0587610-mRNA-1:cds;Parent=Msa0587610-mRNA-1 |
| chr4_2 | three_prime_UTR | 9241427 | 9241427 | 9241427 | ID=Msa0587610-mRNA-1:three_prime_utr;Parent=Msa0587610-mRNA-1 |
| chr4_2 | three_prime_UTR | 9245124 | 9245512 | 9245124 | ID=Msa0587610-mRNA-1:three_prime_utr;Parent=Msa0587610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
