AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589240 MtrunA17_Chr4g0005831 99.723 361 1 0 175 535 513 873 0.0 760
Msa0589240 MtrunA17_Chr4g0005581 98.295 176 3 0 1 176 1 176 1.48e-120 355
Msa0589240 MtrunA17_Chr7g0243241 71.508 179 46 2 1 176 1 177 2.26e-75 239
Msa0589240 MtrunA17_Chr5g0437531 66.667 147 48 1 31 176 24 170 7.52e-57 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589240 AT3G09090.1 79.722 360 73 0 176 535 536 895 0.0 619
Msa0589240 AT3G09090.3 79.646 339 69 0 176 514 536 874 0.0 584
Msa0589240 AT3G09090.2 77.734 256 57 0 176 431 536 791 1.06e-143 434
Msa0589240 AT2G40300.1 66.225 151 49 1 28 176 34 184 2.45e-61 202
Msa0589240 AT5G01600.1 77.236 123 28 0 54 176 59 181 3.68e-61 202
Msa0589240 AT3G56090.1 75.207 121 30 0 56 176 62 182 1.09e-55 188
Msa0589240 AT3G11050.1 66.418 134 45 0 43 176 43 176 2.81e-53 181
Msa0589240 AT3G61010.1 70.000 50 15 0 97 146 369 418 3.10e-14 75.5
Msa0589240 AT3G61010.3 70.000 50 15 0 97 146 369 418 3.10e-14 75.5

Find 171 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCCATGAGTTATAAA+TGG 0.174312 4_2:-11841167 None:intergenic
TATTGCTCATAATGTTTCTT+TGG 0.198410 4_2:+11838256 Msa0589240:CDS
ATACAGTAACATGAGATTTA+TGG 0.205856 4_2:+11842606 Msa0589240:three_prime_UTR
TGTGGATAACAGGTTCTTTA+AGG 0.220356 4_2:+11838841 Msa0589240:intron
CTTGTTACCTCTTCGTTTGA+TGG 0.250632 4_2:+11841251 Msa0589240:CDS
TCCCAAATCATATCTCCTTT+GGG 0.256362 4_2:-11840266 None:intergenic
TTCCCAAATCATATCTCCTT+TGG 0.267264 4_2:-11840267 None:intergenic
CTTGTTGTACCAACACTATC+TGG 0.277612 4_2:+11841095 Msa0589240:CDS
CTTCTTGTTCTTCCAATGCT+TGG 0.288511 4_2:+11842125 Msa0589240:CDS
ATTAAAGAAGAATAACAAAA+AGG 0.290976 4_2:-11838017 None:intergenic
CTTCCAATGCTTGGGATGTT+TGG 0.309012 4_2:+11842134 Msa0589240:CDS
TTCTTGTTCTTCCAATGCTT+GGG 0.326042 4_2:+11842126 Msa0589240:CDS
TCTGATTACACTACACATAA+AGG 0.333065 4_2:-11842438 None:intergenic
TTTCCACAGGCTCCAACTAT+TGG 0.335598 4_2:+11841044 Msa0589240:intron
CTCTCTCCTTGGTAATTGCC+AGG 0.340762 4_2:-11841924 None:intergenic
GTTGTATTGTTAACTAGTTT+TGG 0.348377 4_2:+11842551 Msa0589240:three_prime_UTR
ACAATTTATAGTAGTGCATA+TGG 0.353288 4_2:-11842094 None:intergenic
GCTTTATTGTTCTCTCTCCT+TGG 0.354570 4_2:-11841935 None:intergenic
AGAATCATTTGTTCAAGCTT+TGG 0.360643 4_2:+11842357 Msa0589240:three_prime_UTR
AATGCACCAACGGCATTAAC+TGG 0.362157 4_2:+11838182 Msa0589240:CDS
AAGGGCAAAATTCCAATATC+AGG 0.365226 4_2:-11842419 None:intergenic
ATGTTTACCAGGCTGATAAT+AGG 0.371318 4_2:-11841967 None:intergenic
TTGCAACATTATTTCTTCCT+TGG 0.372211 4_2:-11841644 None:intergenic
AAAGAAACATTATGAGCAAT+AGG 0.377860 4_2:-11838254 None:intergenic
GGGAAGATTCATGTTCTTGA+TGG 0.378492 4_2:+11841116 Msa0589240:CDS
AGTGAATGAGATCCTGATAT+TGG 0.378778 4_2:+11842407 Msa0589240:three_prime_UTR
ACATTATTTCTTCCTTGGTT+AGG 0.389436 4_2:-11841639 None:intergenic
AGAATTTGATCATGCAGAAA+AGG 0.391733 4_2:+11839333 Msa0589240:CDS
TCTGAGGGAGGGCTCACAAT+AGG 0.396058 4_2:-11839313 None:intergenic
GGTTATTTGTACCTCATTGA+TGG 0.398016 4_2:+11841272 Msa0589240:CDS
AAGGACCACAGGAACAGTTT+TGG 0.401580 4_2:+11842016 Msa0589240:CDS
CCTGAGCTCAATGGTGTGCC+TGG 0.404708 4_2:-11842247 None:intergenic
TTCTTCTTTGAATCTTCCTA+TGG 0.409275 4_2:+11838115 Msa0589240:CDS
GAAAATGATGGCAATGGCAC+TGG 0.417978 4_2:-11842185 None:intergenic
TTCTTCCATGAGTTATAAAT+GGG 0.418307 4_2:-11841166 None:intergenic
GCAATGGCACTGGGCCTTGT+GGG 0.420539 4_2:-11842175 None:intergenic
GGAAGGGATGGATCACCTAT+TGG 0.420696 4_2:+11841137 Msa0589240:CDS
ATTTGTTCAAGCTTTGGTTC+AGG 0.421642 4_2:+11842363 Msa0589240:three_prime_UTR
CAGACTTCCTTGCTTGTCCC+TGG 0.428768 4_2:+11841906 Msa0589240:intron
TAAACAGAAGGAAAAGAAGA+AGG 0.440987 4_2:+11841220 Msa0589240:CDS
TTTGTTCAAGCTTTGGTTCA+GGG 0.443656 4_2:+11842364 Msa0589240:three_prime_UTR
CTGAGGGAGGGCTCACAATA+GGG 0.446437 4_2:-11839312 None:intergenic
AGCTGCCAACTGTGGGAGTA+AGG 0.450842 4_2:+11841997 Msa0589240:CDS
ATGCAGATATAGCATGGTCT+TGG 0.451107 4_2:+11841433 Msa0589240:intron
GAAAATTGAGAAAGGATTGA+AGG 0.454323 4_2:-11837986 None:intergenic
TACCAGGCTGATAATAGGTC+TGG 0.454949 4_2:-11841962 None:intergenic
GGCAATGGCACTGGGCCTTG+TGG 0.456896 4_2:-11842176 None:intergenic
AGAGAAGTTCCCTCTTGAAA+TGG 0.464654 4_2:+11840145 Msa0589240:CDS
TCTTTGAATCTTCCTATGGA+TGG 0.467506 4_2:+11838119 Msa0589240:CDS
CCCAAATCATATCTCCTTTG+GGG 0.469336 4_2:-11840265 None:intergenic
CCCCAAAGGAGATATGATTT+GGG 0.470564 4_2:+11840265 Msa0589240:CDS
ATAAATGGGTACCGTCCAAT+AGG 0.470788 4_2:-11841152 None:intergenic
CTGATTACACTACACATAAA+GGG 0.470881 4_2:-11842437 None:intergenic
TCTATGTAACTCATCCTTCA+AGG 0.472281 4_2:+11841688 Msa0589240:CDS
GTCGTTGAGAAAATTGAGAA+AGG 0.472968 4_2:-11837994 None:intergenic
CAACTATTGGTGATATCGAC+GGG 0.476817 4_2:+11841057 Msa0589240:CDS
AGCTTAATTCGATGTTTACC+AGG 0.476834 4_2:-11841978 None:intergenic
TTGAAAATATCCTACCTTGA+GGG 0.477548 4_2:-11841549 None:intergenic
CGGTACCCATTTATAACTCA+TGG 0.479180 4_2:+11841161 Msa0589240:CDS
TTTGGTTCAGGGATAGTTGA+GGG 0.479347 4_2:+11842375 Msa0589240:three_prime_UTR
ACATCAAATTGAGTTATCCC+TGG 0.479391 4_2:+11842288 Msa0589240:three_prime_UTR
TGATTTGCTTAGAATATTCG+TGG 0.482145 4_2:+11839271 Msa0589240:intron
CAGAGACAACGTTGCTCTCA+AGG 0.486549 4_2:+11838710 Msa0589240:CDS
TCATCACGGAAAGCCCTTGA+AGG 0.491356 4_2:-11841702 None:intergenic
TACCTCATTGATGGACCTAC+AGG 0.491627 4_2:+11841281 Msa0589240:CDS
GAAGAAATAATGTTGCAAAT+CGG 0.499551 4_2:+11841649 Msa0589240:CDS
TTCACATTTCCTGAGCTCAA+TGG 0.500529 4_2:-11842256 None:intergenic
AAAATTGAGAAAGGATTGAA+GGG 0.503267 4_2:-11837985 None:intergenic
AGGATTGAAGGGAAGAGAGA+TGG 0.503549 4_2:-11837974 None:intergenic
GATAATTATAGATACCCATC+TGG 0.503686 4_2:+11841762 Msa0589240:CDS
AAACAGAAGGAAAAGAAGAA+GGG 0.505045 4_2:+11841221 Msa0589240:CDS
TTCCTATGGATGGTGATAAG+AGG 0.508563 4_2:+11838129 Msa0589240:CDS
CAAAGCTCACTGCGGCACCC+AGG 0.508968 4_2:-11842306 None:intergenic
CTGATTGTCTCGACAATGAA+TGG 0.509054 4_2:+11841488 Msa0589240:CDS
CATCAAATTGAGTTATCCCT+GGG 0.511777 4_2:+11842289 Msa0589240:three_prime_UTR
TGGTGAAAAGATCGAAACTT+TGG 0.511973 4_2:-11838054 None:intergenic
TCTTTCTTGACTTCTTCAAA+CGG 0.514880 4_2:-11838218 None:intergenic
CATGTTCTTGATGGAAGGGA+TGG 0.519262 4_2:+11841125 Msa0589240:CDS
CTTGTCATCCTTCGCCCACA+AGG 0.519562 4_2:+11842161 Msa0589240:CDS
GAATTTGATCATGCAGAAAA+GGG 0.523661 4_2:+11839334 Msa0589240:CDS
AGATTCATGTTCTTGATGGA+AGG 0.524196 4_2:+11841120 Msa0589240:CDS
AACTCTTTCCTTCCTCATCA+CGG 0.525602 4_2:-11841716 None:intergenic
TGAAAATATCCTACCTTGAG+GGG 0.528195 4_2:-11841548 None:intergenic
ACTACTATAAATTGTTGAAG+TGG 0.530048 4_2:+11842102 Msa0589240:CDS
CCAAATCATATCTCCTTTGG+GGG 0.530327 4_2:-11840264 None:intergenic
GCAGCTGATATTAATGATGA+TGG 0.531122 4_2:+11840191 Msa0589240:CDS
TCTCTCCTTGGTAATTGCCA+GGG 0.532602 4_2:-11841923 None:intergenic
TCGAATTAAGCTGCCAACTG+TGG 0.533264 4_2:+11841989 Msa0589240:CDS
TCGTTGTTCCTTGAAAATGA+TGG 0.536141 4_2:-11842197 None:intergenic
TGTTGATTTAAGTAAACAGA+AGG 0.539500 4_2:+11841208 Msa0589240:CDS
TCCATGCAACAACATTTCCA+TGG 0.540039 4_2:-11840241 None:intergenic
TTCTGCATGATCAAATTCTG+AGG 0.542218 4_2:-11839329 None:intergenic
CCAGGCACACCATTGAGCTC+AGG 0.544197 4_2:+11842247 Msa0589240:three_prime_UTR
TTCAAGGGCTTTCCGTGATG+AGG 0.545086 4_2:+11841704 Msa0589240:CDS
AATATCCTACCTTGAGGGGA+TGG 0.546249 4_2:-11841544 None:intergenic
CCGTCGATATCACCAATAGT+TGG 0.547051 4_2:-11841056 None:intergenic
GCACTGGGCCTTGTGGGCGA+AGG 0.550344 4_2:-11842169 None:intergenic
TCTGCATGATCAAATTCTGA+GGG 0.551161 4_2:-11839328 None:intergenic
GTCTTGGCAGACAATGTAGA+TGG 0.554460 4_2:+11841449 Msa0589240:CDS
AACAACACCTGCTTGAATCT+CGG 0.554490 4_2:-11840168 None:intergenic
AACCAGACCTATTATCAGCC+TGG 0.554997 4_2:+11841960 Msa0589240:CDS
TTGTTGTACCAACACTATCT+GGG 0.556727 4_2:+11841096 Msa0589240:CDS
GATTCATGTTCTTGATGGAA+GGG 0.557088 4_2:+11841121 Msa0589240:CDS
CGAATTAAGCTGCCAACTGT+GGG 0.559486 4_2:+11841990 Msa0589240:CDS
TTGAGGGGATGGTGAGGTGA+GGG 0.560431 4_2:-11841533 None:intergenic
TGGCAGACAATGTAGATGGT+GGG 0.562085 4_2:+11841453 Msa0589240:CDS
AGATACCCATCTGGTCATCA+AGG 0.562292 4_2:+11841771 Msa0589240:CDS
CATCAAACGAAGAGGTAACA+AGG 0.562691 4_2:-11841250 None:intergenic
TTTGAGAAATGACCCACGAT+AGG 0.571890 4_2:-11838080 None:intergenic
TGTGCTGATGTTGTTGACAT+TGG 0.572184 4_2:+11841305 Msa0589240:CDS
CTTTGATCACGTAGTCAAAG+TGG 0.572192 4_2:+11842324 Msa0589240:three_prime_UTR
AAAATGATGGCAATGGCACT+GGG 0.576438 4_2:-11842184 None:intergenic
CTTTGGTTCAGGGATAGTTG+AGG 0.576905 4_2:+11842374 Msa0589240:three_prime_UTR
CAAAGTATGCAAACAAAGAG+TGG 0.577867 4_2:-11838686 None:intergenic
GAACTTACAGTGACATGGTA+TGG 0.578989 4_2:-11841795 None:intergenic
ACACCAAACATCCCAAGCAT+TGG 0.580558 4_2:-11842137 None:intergenic
ACAATGGCGGCTTTGTTGTG+TGG 0.583638 4_2:-11837948 None:intergenic
AGGGCTTTCCGTGATGAGGA+AGG 0.583864 4_2:+11841708 Msa0589240:CDS
TGAATCTCGGCCATTTCAAG+AGG 0.584486 4_2:-11840155 None:intergenic
CCAACTATTGGTGATATCGA+CGG 0.586361 4_2:+11841056 Msa0589240:CDS
CTAGTTACTGCTGATACCCA+TGG 0.586395 4_2:+11840224 Msa0589240:CDS
GTGGTCCTTACTCCCACAGT+TGG 0.587468 4_2:-11842002 None:intergenic
GAAAAGGGAGATGCATTGTA+TGG 0.589420 4_2:+11839349 Msa0589240:CDS
TGCTGCTGCAAATGCACCAA+CGG 0.590613 4_2:+11838172 Msa0589240:CDS
CTCGACCAAAACTGTTCCTG+TGG 0.591060 4_2:-11842021 None:intergenic
ATTGGTGATATCGACGGGGA+TGG 0.591949 4_2:+11841062 Msa0589240:CDS
AGAGACAACGTTGCTCTCAA+GGG 0.594095 4_2:+11838711 Msa0589240:CDS
AAAGCTCACTGCGGCACCCA+GGG 0.595695 4_2:-11842305 None:intergenic
TTCCTCTTATCACCATCCAT+AGG 0.596094 4_2:-11838131 None:intergenic
CCATGCAACAACATTTCCAT+GGG 0.597707 4_2:-11840240 None:intergenic
CTATGTAACTCATCCTTCAA+GGG 0.598298 4_2:+11841689 Msa0589240:CDS
CTTGAGGGGATGGTGAGGTG+AGG 0.598439 4_2:-11841534 None:intergenic
GCAAATCGGTACGGTCGTGA+AGG 0.603856 4_2:+11841663 Msa0589240:CDS
CATGATCAAATTCTGAGGGA+GGG 0.603900 4_2:-11839324 None:intergenic
ACTGTGGGAGTAAGGACCAC+AGG 0.604153 4_2:+11842005 Msa0589240:CDS
TTGGCAGACAATGTAGATGG+TGG 0.604254 4_2:+11841452 Msa0589240:CDS
CCCATGGAAATGTTGTTGCA+TGG 0.605735 4_2:+11840240 Msa0589240:CDS
CTCACCTCACCATCCCCTCA+AGG 0.605790 4_2:+11841535 Msa0589240:CDS
GCATGATCAAATTCTGAGGG+AGG 0.609988 4_2:-11839325 None:intergenic
TTGGTTTCAACTTTACGATG+TGG 0.614299 4_2:+11842570 Msa0589240:three_prime_UTR
GAAATGGCCGAGATTCAAGC+AGG 0.614578 4_2:+11840161 Msa0589240:CDS
GAATATTCGTGGTGGAAGAG+TGG 0.615684 4_2:+11839282 Msa0589240:intron
GTTCTTTAAGGAATCTAGTG+AGG 0.615734 4_2:+11838853 Msa0589240:CDS
TTCCTTGAAAATGATGGCAA+TGG 0.615790 4_2:-11842191 None:intergenic
TTGGTACAACAAGCTCAGTA+CGG 0.621516 4_2:-11841085 None:intergenic
CTTGTCCCTGGCAATTACCA+AGG 0.622404 4_2:+11841918 Msa0589240:CDS
ATAACACCAGTTAATGCCGT+TGG 0.628331 4_2:-11838188 None:intergenic
CAAATAACCATCAAACGAAG+AGG 0.628486 4_2:-11841258 None:intergenic
AATAATGTTGCAAATCGGTA+CGG 0.629908 4_2:+11841654 Msa0589240:CDS
TATGGTCCTTGATGACCAGA+TGG 0.631810 4_2:-11841777 None:intergenic
GGCAGACAATGTAGATGGTG+GGG 0.633931 4_2:+11841454 Msa0589240:CDS
TGAATCTTCCCAGATAGTGT+TGG 0.640555 4_2:-11841104 None:intergenic
AAACAAAGAGTGGTACACAT+AGG 0.641518 4_2:-11838676 None:intergenic
GGGATGGATCACCTATTGGA+CGG 0.641758 4_2:+11841141 Msa0589240:CDS
GTAATTGCCAGGGACAAGCA+AGG 0.643916 4_2:-11841913 None:intergenic
CCTACCTTGAGGGGATGGTG+AGG 0.643978 4_2:-11841539 None:intergenic
GATGGGAACTTACAGTGACA+TGG 0.645843 4_2:-11841800 None:intergenic
TGAGAAGCTCATGAAATACC+AGG 0.648725 4_2:+11838892 Msa0589240:CDS
GAATCTCGGCCATTTCAAGA+GGG 0.650459 4_2:-11840154 None:intergenic
AGCCTGTAGGTCCATCAATG+AGG 0.655462 4_2:-11841283 None:intergenic
GCATGGAGATTGCCTAACCA+AGG 0.658526 4_2:+11841627 Msa0589240:CDS
AGAGAGATGGTTAACAATGG+CGG 0.662971 4_2:-11837961 None:intergenic
ATGGTCCTTGATGACCAGAT+GGG 0.674700 4_2:-11841776 None:intergenic
AAATGACCCACGATAGGTGA+TGG 0.680438 4_2:-11838074 None:intergenic
ACAACATCAGCACAGCCTGT+AGG 0.681376 4_2:-11841296 None:intergenic
TGATAAGAGGAAGAACGTGA+AGG 0.682141 4_2:+11838142 Msa0589240:CDS
GGAAGAGAGATGGTTAACAA+TGG 0.682755 4_2:-11837964 None:intergenic
TTTGCTTAGAATATTCGTGG+TGG 0.687765 4_2:+11839274 Msa0589240:intron
ATCAAACGAAGAGGTAACAA+GGG 0.688966 4_2:-11841249 None:intergenic
AACTATTGGTGATATCGACG+GGG 0.720915 4_2:+11841058 Msa0589240:CDS
TACGTGATCAAAGCTCACTG+CGG 0.755579 4_2:-11842314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCAAATATATATTTTCTT+TGG + chr4_2:11840072-11840091 Msa0589240:intron 10.0%
!! TTAAAGAAGAATAACAAAAA+GGG - chr4_2:11838019-11838038 None:intergenic 15.0%
!! ATTAAAGAAGAATAACAAAA+AGG - chr4_2:11838020-11838039 None:intergenic 15.0%
!!! TTTTTGTTATTCTTCTTTAA+TGG + chr4_2:11838019-11838038 Msa0589240:exon 15.0%
!!! ATTATTTACTTTTTGCTTTT+TGG + chr4_2:11838399-11838418 Msa0589240:intron 15.0%
!!! TTAACATATAATGATTTTAG+AGG - chr4_2:11839193-11839212 None:intergenic 15.0%
!!! TTTTTTTTATAAGCTCAATT+AGG + chr4_2:11839962-11839981 Msa0589240:intron 15.0%
!!! TTTTTTTATAAGCTCAATTA+GGG + chr4_2:11839963-11839982 Msa0589240:intron 15.0%
!! TTATGATTCACAAAAAAAAA+AGG - chr4_2:11839989-11840008 None:intergenic 15.0%
!!! TTTTTTTGTGAATCATAATT+AGG + chr4_2:11839991-11840010 Msa0589240:intron 15.0%
!!! TTTTTTGTGAATCATAATTA+GGG + chr4_2:11839992-11840011 Msa0589240:intron 15.0%
!!! GTTTAATAGCATTTTTAAAT+TGG + chr4_2:11840421-11840440 Msa0589240:intron 15.0%
!!! AAAATCGATTTATAAGATTA+GGG + chr4_2:11840496-11840515 Msa0589240:intron 15.0%
!!! TAGATCTATTTTTCTTACTT+AGG + chr4_2:11838444-11838463 Msa0589240:intron 20.0%
!!! GCTTATTTCTTAATACTATA+TGG + chr4_2:11838783-11838802 Msa0589240:intron 20.0%
!!! ATTGTTAAGTAGTAACTTTT+TGG + chr4_2:11839001-11839020 Msa0589240:intron 20.0%
!! TTATACTAAAGAATCATGAT+TGG - chr4_2:11839051-11839070 None:intergenic 20.0%
!!! AGTATAATAGCTTGAATTTT+AGG + chr4_2:11839064-11839083 Msa0589240:intron 20.0%
!! TTTATATTGTCCTCTTATTA+TGG + chr4_2:11839220-11839239 Msa0589240:intron 20.0%
!! ATTACTATATCCATAATAAG+AGG - chr4_2:11839233-11839252 None:intergenic 20.0%
!! TTAAATATAATCACATGTGT+CGG + chr4_2:11839512-11839531 Msa0589240:intron 20.0%
!!! TTTTTGTGAATCATAATTAG+GGG + chr4_2:11839993-11840012 Msa0589240:intron 20.0%
!!! TTTTTTTTTCTTCCTCAAAT+AGG + chr4_2:11840113-11840132 Msa0589240:intron 20.0%
!!! ATAGCATTTTTAAATTGGTT+TGG + chr4_2:11840426-11840445 Msa0589240:intron 20.0%
!!! TAGCATTTTTAAATTGGTTT+GGG + chr4_2:11840427-11840446 Msa0589240:intron 20.0%
!!! ATCTTATAAATCGATTTTGT+AGG - chr4_2:11840494-11840513 None:intergenic 20.0%
!!! CAAAATCGATTTATAAGATT+AGG + chr4_2:11840495-11840514 Msa0589240:intron 20.0%
!! TAAAATTATTATTTAAGCCC+TGG - chr4_2:11840660-11840679 None:intergenic 20.0%
!! AACAGAATTAAAATGAAAAC+TGG - chr4_2:11840793-11840812 None:intergenic 20.0%
! AAAATTGAGAAAGGATTGAA+GGG - chr4_2:11837988-11838007 None:intergenic 25.0%
! AAGATTCAAAGAAGAAAAAG+TGG - chr4_2:11838111-11838130 None:intergenic 25.0%
! AAAGAAACATTATGAGCAAT+AGG - chr4_2:11838257-11838276 None:intergenic 25.0%
! TATTGCTCATAATGTTTCTT+TGG + chr4_2:11838256-11838275 Msa0589240:CDS 25.0%
!! AATTTTCAGCCAAGTATTTT+AGG + chr4_2:11838501-11838520 Msa0589240:intron 25.0%
! AGTAACAACCTATGATAATA+GGG - chr4_2:11838527-11838546 None:intergenic 25.0%
! AAGTAACAACCTATGATAAT+AGG - chr4_2:11838528-11838547 None:intergenic 25.0%
!! ATAATAGCTTGAATTTTAGG+AGG + chr4_2:11839067-11839086 Msa0589240:intron 25.0%
! TTATCTTGATGTTATTGTTG+TGG + chr4_2:11839106-11839125 Msa0589240:intron 25.0%
! AATATGATAGATCAAAACAG+AGG - chr4_2:11839411-11839430 None:intergenic 25.0%
!!! CTTTTTTATTTCCCTTCTTT+TGG + chr4_2:11839655-11839674 Msa0589240:intron 25.0%
!!! ATAATTAGGGGTTTTAAGTA+GGG + chr4_2:11840005-11840024 Msa0589240:intron 25.0%
!!! TATAATGGATACTAGTGAAA+AGG + chr4_2:11840587-11840606 Msa0589240:intron 25.0%
! TATTTCTTTCAAAAACCTGT+TGG - chr4_2:11840702-11840721 None:intergenic 25.0%
! ATAATCAACATATGCTTCAT+AGG + chr4_2:11840888-11840907 Msa0589240:intron 25.0%
!! AATTTAGAAGACATTGACTA+AGG - chr4_2:11841021-11841040 None:intergenic 25.0%
!! CTTCTAAATTAATTTTCCAC+AGG + chr4_2:11841031-11841050 Msa0589240:intron 25.0%
! TTCTTCCATGAGTTATAAAT+GGG - chr4_2:11841169-11841188 None:intergenic 25.0%
! ATTCTTCCATGAGTTATAAA+TGG - chr4_2:11841170-11841189 None:intergenic 25.0%
!!! TGTTGATTTAAGTAAACAGA+AGG + chr4_2:11841208-11841227 Msa0589240:CDS 25.0%
! TTCATGAAAGAAAGAAACAA+AGG - chr4_2:11841363-11841382 None:intergenic 25.0%
!!! TTTTTTATGCAGATATAGCA+TGG + chr4_2:11841427-11841446 Msa0589240:intron 25.0%
! GAAGAAATAATGTTGCAAAT+CGG + chr4_2:11841649-11841668 Msa0589240:CDS 25.0%
! ATTAGAGATCTAACGTAATT+TGG - chr4_2:11841825-11841844 None:intergenic 25.0%
! ACAATTTATAGTAGTGCATA+TGG - chr4_2:11842097-11842116 None:intergenic 25.0%
! ACTACTATAAATTGTTGAAG+TGG + chr4_2:11842102-11842121 Msa0589240:CDS 25.0%
!!! GTTGTATTGTTAACTAGTTT+TGG + chr4_2:11842551-11842570 Msa0589240:three_prime_UTR 25.0%
! ATACAGTAACATGAGATTTA+TGG + chr4_2:11842606-11842625 Msa0589240:three_prime_UTR 25.0%
GAAAATTGAGAAAGGATTGA+AGG - chr4_2:11837989-11838008 None:intergenic 30.0%
TTCTTCTTTGAATCTTCCTA+TGG + chr4_2:11838115-11838134 Msa0589240:CDS 30.0%
TCTTTCTTGACTTCTTCAAA+CGG - chr4_2:11838221-11838240 None:intergenic 30.0%
ATAATAGGGCCTAAAATACT+TGG - chr4_2:11838513-11838532 None:intergenic 30.0%
! ATTTTAGGCCCTATTATCAT+AGG + chr4_2:11838516-11838535 Msa0589240:intron 30.0%
TAATGATTGTAAATGCAGTG+TGG + chr4_2:11838641-11838660 Msa0589240:intron 30.0%
TACAAGCTGAATCTTATAGA+GGG - chr4_2:11838763-11838782 None:intergenic 30.0%
! CTTTTGTGAATTTTTGTGTG+TGG + chr4_2:11838823-11838842 Msa0589240:intron 30.0%
! AATTTTTGTGTGTGGATAAC+AGG + chr4_2:11838831-11838850 Msa0589240:intron 30.0%
!! GTAGTAACTTTTTGGTATAG+TGG + chr4_2:11839009-11839028 Msa0589240:intron 30.0%
TGGTATAGTGGTAAATAACA+TGG + chr4_2:11839021-11839040 Msa0589240:intron 30.0%
!! GATTTTAGAGGTCTTTGTAA+CGG - chr4_2:11839181-11839200 None:intergenic 30.0%
CGAATATTCTAAGCAAATCA+AGG - chr4_2:11839271-11839290 None:intergenic 30.0%
!! TGATTTGCTTAGAATATTCG+TGG + chr4_2:11839271-11839290 Msa0589240:intron 30.0%
AGAATTTGATCATGCAGAAA+AGG + chr4_2:11839333-11839352 Msa0589240:CDS 30.0%
GAATTTGATCATGCAGAAAA+GGG + chr4_2:11839334-11839353 Msa0589240:CDS 30.0%
GAGTCAGCATAAATAGTTAA+AGG - chr4_2:11839632-11839651 None:intergenic 30.0%
ATTCAAAAACAGAGAGAAAG+AGG - chr4_2:11839759-11839778 None:intergenic 30.0%
! CAATAAAGTTTTGCATTGCA+AGG + chr4_2:11839899-11839918 Msa0589240:intron 30.0%
!! GGCTCTGAAATCTTAAAATT+CGG + chr4_2:11839935-11839954 Msa0589240:intron 30.0%
!! GCTCTGAAATCTTAAAATTC+GGG + chr4_2:11839936-11839955 Msa0589240:intron 30.0%
!!! CATAATTAGGGGTTTTAAGT+AGG + chr4_2:11840004-11840023 Msa0589240:intron 30.0%
TTCTGTTCGACTAATAAACA+AGG - chr4_2:11840045-11840064 None:intergenic 30.0%
TCTCTAACTTTACCTATTTG+AGG - chr4_2:11840128-11840147 None:intergenic 30.0%
TTGAGATAGTACATTACATG+TGG - chr4_2:11840314-11840333 None:intergenic 30.0%
TGCTATTAAACATACACTGT+CGG - chr4_2:11840412-11840431 None:intergenic 30.0%
!! TTTAAATTGGTTTGGGTTGA+TGG + chr4_2:11840434-11840453 Msa0589240:intron 30.0%
!! TTAAATTGGTTTGGGTTGAT+GGG + chr4_2:11840435-11840454 Msa0589240:intron 30.0%
TGATGGGATTTCTTAGAATT+TGG + chr4_2:11840451-11840470 Msa0589240:intron 30.0%
GATGGGATTTCTTAGAATTT+GGG + chr4_2:11840452-11840471 Msa0589240:intron 30.0%
ATGGGATTTCTTAGAATTTG+GGG + chr4_2:11840453-11840472 Msa0589240:intron 30.0%
TCGACAAGGTAATTATAAGA+TGG + chr4_2:11840547-11840566 Msa0589240:intron 30.0%
CAAGGTAATTATAAGATGGA+CGG + chr4_2:11840551-11840570 Msa0589240:intron 30.0%
TTCATTGACAAAGGCAAAAT+GGG - chr4_2:11840731-11840750 None:intergenic 30.0%
TTTCATTGACAAAGGCAAAA+TGG - chr4_2:11840732-11840751 None:intergenic 30.0%
!! TGAAAGTGTTTCATTGACAA+AGG - chr4_2:11840740-11840759 None:intergenic 30.0%
CAATGAAACACTTTCAATCA+TGG + chr4_2:11840744-11840763 Msa0589240:intron 30.0%
TTCCCAAATTGTTAAGACAT+GGG + chr4_2:11840815-11840834 Msa0589240:intron 30.0%
CTAATATTCCTTTGTACCTT+TGG + chr4_2:11840922-11840941 Msa0589240:intron 30.0%
! AGTTGTACAAGCTATGTTTT+TGG - chr4_2:11840949-11840968 None:intergenic 30.0%
TAAACAGAAGGAAAAGAAGA+AGG + chr4_2:11841220-11841239 Msa0589240:CDS 30.0%
AAACAGAAGGAAAAGAAGAA+GGG + chr4_2:11841221-11841240 Msa0589240:CDS 30.0%
! TCATTTAGCTTCTGGAAAAT+AGG - chr4_2:11841398-11841417 None:intergenic 30.0%
TTGAAAATATCCTACCTTGA+GGG - chr4_2:11841552-11841571 None:intergenic 30.0%
TTTGAAAATATCCTACCTTG+AGG - chr4_2:11841553-11841572 None:intergenic 30.0%
ATTGCTTTATACCATGTTTC+AGG + chr4_2:11841605-11841624 Msa0589240:intron 30.0%
! ACATTATTTCTTCCTTGGTT+AGG - chr4_2:11841642-11841661 None:intergenic 30.0%
! TTGCAACATTATTTCTTCCT+TGG - chr4_2:11841647-11841666 None:intergenic 30.0%
AATAATGTTGCAAATCGGTA+CGG + chr4_2:11841654-11841673 Msa0589240:CDS 30.0%
GATAATTATAGATACCCATC+TGG + chr4_2:11841762-11841781 Msa0589240:CDS 30.0%
AGATCTAACGTAATTTGGAT+GGG - chr4_2:11841820-11841839 None:intergenic 30.0%
TTATAAACTGAGTGCTTCAT+AGG - chr4_2:11841851-11841870 None:intergenic 30.0%
!! ATTATTTTGTTTCATGCTCC+AGG + chr4_2:11842229-11842248 Msa0589240:three_prime_UTR 30.0%
AGAATCATTTGTTCAAGCTT+TGG + chr4_2:11842357-11842376 Msa0589240:three_prime_UTR 30.0%
CTGATTACACTACACATAAA+GGG - chr4_2:11842440-11842459 None:intergenic 30.0%
TCTGATTACACTACACATAA+AGG - chr4_2:11842441-11842460 None:intergenic 30.0%
GTCGTTGAGAAAATTGAGAA+AGG - chr4_2:11837997-11838016 None:intergenic 35.0%
TGGTGAAAAGATCGAAACTT+TGG - chr4_2:11838057-11838076 None:intergenic 35.0%
TCTTTGAATCTTCCTATGGA+TGG + chr4_2:11838119-11838138 Msa0589240:CDS 35.0%
AAACAAAGAGTGGTACACAT+AGG - chr4_2:11838679-11838698 None:intergenic 35.0%
CAAAGTATGCAAACAAAGAG+TGG - chr4_2:11838689-11838708 None:intergenic 35.0%
CTACAAGCTGAATCTTATAG+AGG - chr4_2:11838764-11838783 None:intergenic 35.0%
TGTGGATAACAGGTTCTTTA+AGG + chr4_2:11838841-11838860 Msa0589240:intron 35.0%
! GTTCTTTAAGGAATCTAGTG+AGG + chr4_2:11838853-11838872 Msa0589240:CDS 35.0%
ACTCAGGAAGTAAATCATGT+TGG + chr4_2:11838925-11838944 Msa0589240:intron 35.0%
TTTGCTTAGAATATTCGTGG+TGG + chr4_2:11839274-11839293 Msa0589240:intron 35.0%
TCTGCATGATCAAATTCTGA+GGG - chr4_2:11839331-11839350 None:intergenic 35.0%
TTCTGCATGATCAAATTCTG+AGG - chr4_2:11839332-11839351 None:intergenic 35.0%
TCTCGTGATCATTATGCATT+AGG + chr4_2:11839535-11839554 Msa0589240:intron 35.0%
GCTGAATCAAACCAAAAGAA+GGG - chr4_2:11839669-11839688 None:intergenic 35.0%
! AAAGTTTTGCATTGCAAGGT+CGG + chr4_2:11839903-11839922 Msa0589240:intron 35.0%
TATTAGTCGAACAGAAGCTT+TGG + chr4_2:11840049-11840068 Msa0589240:intron 35.0%
GCAGCTGATATTAATGATGA+TGG + chr4_2:11840191-11840210 Msa0589240:CDS 35.0%
TCCCAAATCATATCTCCTTT+GGG - chr4_2:11840269-11840288 None:intergenic 35.0%
TTCCCAAATCATATCTCCTT+TGG - chr4_2:11840270-11840289 None:intergenic 35.0%
TGTACTATCTCAATCTTCCT+TGG + chr4_2:11840321-11840340 Msa0589240:intron 35.0%
! GTTTTGCTGAATATTGAACG+TGG + chr4_2:11840384-11840403 Msa0589240:intron 35.0%
CTAGTATCCATTATAGTCTC+CGG - chr4_2:11840582-11840601 None:intergenic 35.0%
TAAGTTTCTCATTTGCCAAC+AGG + chr4_2:11840684-11840703 Msa0589240:intron 35.0%
CTTCCCAAATTGTTAAGACA+TGG + chr4_2:11840814-11840833 Msa0589240:intron 35.0%
AGCCCATGTCTTAACAATTT+GGG - chr4_2:11840820-11840839 None:intergenic 35.0%
!! TTTTTGGACCAAAGGTACAA+AGG - chr4_2:11840933-11840952 None:intergenic 35.0%
!!! AAGCTATGTTTTTGGACCAA+AGG - chr4_2:11840941-11840960 None:intergenic 35.0%
TTAAGAGCAAAACTGCTCAA+TGG - chr4_2:11840990-11841009 None:intergenic 35.0%
TTGTTGTACCAACACTATCT+GGG + chr4_2:11841096-11841115 Msa0589240:CDS 35.0%
AGATTCATGTTCTTGATGGA+AGG + chr4_2:11841120-11841139 Msa0589240:CDS 35.0%
GATTCATGTTCTTGATGGAA+GGG + chr4_2:11841121-11841140 Msa0589240:CDS 35.0%
ATCAAACGAAGAGGTAACAA+GGG - chr4_2:11841252-11841271 None:intergenic 35.0%
CAAATAACCATCAAACGAAG+AGG - chr4_2:11841261-11841280 None:intergenic 35.0%
GGTTATTTGTACCTCATTGA+TGG + chr4_2:11841272-11841291 Msa0589240:CDS 35.0%
! TAGCTTCTGGAAAATAGGAT+GGG - chr4_2:11841393-11841412 None:intergenic 35.0%
! TTAGCTTCTGGAAAATAGGA+TGG - chr4_2:11841394-11841413 None:intergenic 35.0%
! TTACTCGTTCATTTAGCTTC+TGG - chr4_2:11841406-11841425 None:intergenic 35.0%
TGAAAATATCCTACCTTGAG+GGG - chr4_2:11841551-11841570 None:intergenic 35.0%
TTTATACCATGTTTCAGGCA+TGG + chr4_2:11841610-11841629 Msa0589240:intron 35.0%
TCTATGTAACTCATCCTTCA+AGG + chr4_2:11841688-11841707 Msa0589240:CDS 35.0%
CTATGTAACTCATCCTTCAA+GGG + chr4_2:11841689-11841708 Msa0589240:CDS 35.0%
!!! GGAAGGAAAGAGTTTTTTTG+TGG + chr4_2:11841725-11841744 Msa0589240:CDS 35.0%
GAGATCTAACGTAATTTGGA+TGG - chr4_2:11841821-11841840 None:intergenic 35.0%
GATGATTTCACAGCATGAAA+AGG - chr4_2:11841887-11841906 None:intergenic 35.0%
ATGTTTACCAGGCTGATAAT+AGG - chr4_2:11841970-11841989 None:intergenic 35.0%
AGCTTAATTCGATGTTTACC+AGG - chr4_2:11841981-11842000 None:intergenic 35.0%
TTCTTGTTCTTCCAATGCTT+GGG + chr4_2:11842126-11842145 Msa0589240:CDS 35.0%
TTCCTTGAAAATGATGGCAA+TGG - chr4_2:11842194-11842213 None:intergenic 35.0%
TCGTTGTTCCTTGAAAATGA+TGG - chr4_2:11842200-11842219 None:intergenic 35.0%
ACATCAAATTGAGTTATCCC+TGG + chr4_2:11842288-11842307 Msa0589240:three_prime_UTR 35.0%
CATCAAATTGAGTTATCCCT+GGG + chr4_2:11842289-11842308 Msa0589240:three_prime_UTR 35.0%
! ATTTGTTCAAGCTTTGGTTC+AGG + chr4_2:11842363-11842382 Msa0589240:three_prime_UTR 35.0%
! TTTGTTCAAGCTTTGGTTCA+GGG + chr4_2:11842364-11842383 Msa0589240:three_prime_UTR 35.0%
AGTGAATGAGATCCTGATAT+TGG + chr4_2:11842407-11842426 Msa0589240:three_prime_UTR 35.0%
AAGGGCAAAATTCCAATATC+AGG - chr4_2:11842422-11842441 None:intergenic 35.0%
! TGTAGAACTGAACGTGTTTT+TGG + chr4_2:11842469-11842488 Msa0589240:three_prime_UTR 35.0%
TTGGTTTCAACTTTACGATG+TGG + chr4_2:11842570-11842589 Msa0589240:three_prime_UTR 35.0%
AGAGAGATGGTTAACAATGG+CGG - chr4_2:11837964-11837983 None:intergenic 40.0%
GGAAGAGAGATGGTTAACAA+TGG - chr4_2:11837967-11837986 None:intergenic 40.0%
! TTTTCACCATCACCTATCGT+GGG + chr4_2:11838068-11838087 Msa0589240:CDS 40.0%
TTTGAGAAATGACCCACGAT+AGG - chr4_2:11838083-11838102 None:intergenic 40.0%
TTCCTATGGATGGTGATAAG+AGG + chr4_2:11838129-11838148 Msa0589240:CDS 40.0%
TTCCTCTTATCACCATCCAT+AGG - chr4_2:11838134-11838153 None:intergenic 40.0%
TGATAAGAGGAAGAACGTGA+AGG + chr4_2:11838142-11838161 Msa0589240:CDS 40.0%
ATAACACCAGTTAATGCCGT+TGG - chr4_2:11838191-11838210 None:intergenic 40.0%
GGTTTCGTATCATCCTTACT+TGG - chr4_2:11838742-11838761 None:intergenic 40.0%
TGAGAAGCTCATGAAATACC+AGG + chr4_2:11838892-11838911 Msa0589240:CDS 40.0%
AAGCTCATGAAATACCAGGT+TGG + chr4_2:11838896-11838915 Msa0589240:intron 40.0%
!! ACCAGGTTGGTATTTAACTC+AGG + chr4_2:11838909-11838928 Msa0589240:intron 40.0%
TCCTGAGTTAAATACCAACC+TGG - chr4_2:11838913-11838932 None:intergenic 40.0%
! CATGATCAAATTCTGAGGGA+GGG - chr4_2:11839327-11839346 None:intergenic 40.0%
GAAAAGGGAGATGCATTGTA+TGG + chr4_2:11839349-11839368 Msa0589240:CDS 40.0%
CTGCAGATCGAAAACATGTT+TGG - chr4_2:11839563-11839582 None:intergenic 40.0%
GGCTGAATCAAACCAAAAGA+AGG - chr4_2:11839670-11839689 None:intergenic 40.0%
!!! CTTTTGGTTTGATTCAGCCA+TGG + chr4_2:11839671-11839690 Msa0589240:intron 40.0%
GTTTGATTCAGCCATGGAAT+TGG + chr4_2:11839677-11839696 Msa0589240:intron 40.0%
!!! TTGCAAGGTCGGACATTTTT+TGG + chr4_2:11839914-11839933 Msa0589240:intron 40.0%
AGAGAAGTTCCCTCTTGAAA+TGG + chr4_2:11840145-11840164 Msa0589240:CDS 40.0%
AACAACACCTGCTTGAATCT+CGG - chr4_2:11840171-11840190 None:intergenic 40.0%
CCATGCAACAACATTTCCAT+GGG - chr4_2:11840243-11840262 None:intergenic 40.0%
TCCATGCAACAACATTTCCA+TGG - chr4_2:11840244-11840263 None:intergenic 40.0%
CCAAATCATATCTCCTTTGG+GGG - chr4_2:11840267-11840286 None:intergenic 40.0%
CCCAAATCATATCTCCTTTG+GGG - chr4_2:11840268-11840287 None:intergenic 40.0%
CCCCAAAGGAGATATGATTT+GGG + chr4_2:11840265-11840284 Msa0589240:CDS 40.0%
GGATTTCTTAGAATTTGGGG+TGG + chr4_2:11840456-11840475 Msa0589240:intron 40.0%
! ATGCCATTTCACATCCAAAG+TGG + chr4_2:11840519-11840538 Msa0589240:intron 40.0%
AAGAGTAATGAAAGCAAGCC+AGG + chr4_2:11840639-11840658 Msa0589240:intron 40.0%
AGAGTAATGAAAGCAAGCCA+GGG + chr4_2:11840640-11840659 Msa0589240:intron 40.0%
AATGAAAACTGGCAGCTCAA+AGG - chr4_2:11840782-11840801 None:intergenic 40.0%
GAGCCCATGTCTTAACAATT+TGG - chr4_2:11840821-11840840 None:intergenic 40.0%
! CCAACTATTGGTGATATCGA+CGG + chr4_2:11841056-11841075 Msa0589240:CDS 40.0%
! CAACTATTGGTGATATCGAC+GGG + chr4_2:11841057-11841076 Msa0589240:CDS 40.0%
! AACTATTGGTGATATCGACG+GGG + chr4_2:11841058-11841077 Msa0589240:CDS 40.0%
TTGGTACAACAAGCTCAGTA+CGG - chr4_2:11841088-11841107 None:intergenic 40.0%
! CTTGTTGTACCAACACTATC+TGG + chr4_2:11841095-11841114 Msa0589240:CDS 40.0%
TGAATCTTCCCAGATAGTGT+TGG - chr4_2:11841107-11841126 None:intergenic 40.0%
GGGAAGATTCATGTTCTTGA+TGG + chr4_2:11841116-11841135 Msa0589240:CDS 40.0%
! ATAAATGGGTACCGTCCAAT+AGG - chr4_2:11841155-11841174 None:intergenic 40.0%
CGGTACCCATTTATAACTCA+TGG + chr4_2:11841161-11841180 Msa0589240:CDS 40.0%
CATCAAACGAAGAGGTAACA+AGG - chr4_2:11841253-11841272 None:intergenic 40.0%
CTTGTTACCTCTTCGTTTGA+TGG + chr4_2:11841251-11841270 Msa0589240:CDS 40.0%
! TGTGCTGATGTTGTTGACAT+TGG + chr4_2:11841305-11841324 Msa0589240:CDS 40.0%
ATGCAGATATAGCATGGTCT+TGG + chr4_2:11841433-11841452 Msa0589240:intron 40.0%
CTGATTGTCTCGACAATGAA+TGG + chr4_2:11841488-11841507 Msa0589240:CDS 40.0%
AACTCTTTCCTTCCTCATCA+CGG - chr4_2:11841719-11841738 None:intergenic 40.0%
GAACTTACAGTGACATGGTA+TGG - chr4_2:11841798-11841817 None:intergenic 40.0%
! GCTTTATTGTTCTCTCTCCT+TGG - chr4_2:11841938-11841957 None:intergenic 40.0%
GTCGAGATGGTTGACAAAAA+TGG + chr4_2:11842038-11842057 Msa0589240:CDS 40.0%
CTTCTTGTTCTTCCAATGCT+TGG + chr4_2:11842125-11842144 Msa0589240:CDS 40.0%
AAAATGATGGCAATGGCACT+GGG - chr4_2:11842187-11842206 None:intergenic 40.0%
! TGCCATTGCCATCATTTTCA+AGG + chr4_2:11842189-11842208 Msa0589240:CDS 40.0%
TTCACATTTCCTGAGCTCAA+TGG - chr4_2:11842259-11842278 None:intergenic 40.0%
CTTTGATCACGTAGTCAAAG+TGG + chr4_2:11842324-11842343 Msa0589240:three_prime_UTR 40.0%
! TTTGGTTCAGGGATAGTTGA+GGG + chr4_2:11842375-11842394 Msa0589240:three_prime_UTR 40.0%
AGGATTGAAGGGAAGAGAGA+TGG - chr4_2:11837977-11837996 None:intergenic 45.0%
! CTTTTCACCATCACCTATCG+TGG + chr4_2:11838067-11838086 Msa0589240:CDS 45.0%
AAATGACCCACGATAGGTGA+TGG - chr4_2:11838077-11838096 None:intergenic 45.0%
AATGCACCAACGGCATTAAC+TGG + chr4_2:11838182-11838201 Msa0589240:CDS 45.0%
AGAGACAACGTTGCTCTCAA+GGG + chr4_2:11838711-11838730 Msa0589240:CDS 45.0%
! GAATATTCGTGGTGGAAGAG+TGG + chr4_2:11839282-11839301 Msa0589240:intron 45.0%
! GCATGATCAAATTCTGAGGG+AGG - chr4_2:11839328-11839347 None:intergenic 45.0%
CAAAGACAGAGCCAATTCCA+TGG - chr4_2:11839691-11839710 None:intergenic 45.0%
!! CATGGAATTGGCTCTGTCTT+TGG + chr4_2:11839689-11839708 Msa0589240:intron 45.0%
GAATCTCGGCCATTTCAAGA+GGG - chr4_2:11840157-11840176 None:intergenic 45.0%
TGAATCTCGGCCATTTCAAG+AGG - chr4_2:11840158-11840177 None:intergenic 45.0%
CTAGTTACTGCTGATACCCA+TGG + chr4_2:11840224-11840243 Msa0589240:CDS 45.0%
CCCATGGAAATGTTGTTGCA+TGG + chr4_2:11840240-11840259 Msa0589240:CDS 45.0%
CCCCCAAAGGAGATATGATT+TGG + chr4_2:11840264-11840283 Msa0589240:CDS 45.0%
CTACACTCATTGACATGCCA+AGG - chr4_2:11840341-11840360 None:intergenic 45.0%
GCACCACTTTGGATGTGAAA+TGG - chr4_2:11840525-11840544 None:intergenic 45.0%
TATAAGATGGACGGAGAAGC+CGG + chr4_2:11840560-11840579 Msa0589240:intron 45.0%
!! ATGGGCTCTTCTGTTTCTGA+TGG + chr4_2:11840833-11840852 Msa0589240:intron 45.0%
TTTCCACAGGCTCCAACTAT+TGG + chr4_2:11841044-11841063 Msa0589240:intron 45.0%
CCGTCGATATCACCAATAGT+TGG - chr4_2:11841059-11841078 None:intergenic 45.0%
CATGTTCTTGATGGAAGGGA+TGG + chr4_2:11841125-11841144 Msa0589240:CDS 45.0%
! TACCTCATTGATGGACCTAC+AGG + chr4_2:11841281-11841300 Msa0589240:CDS 45.0%
GTCTTGGCAGACAATGTAGA+TGG + chr4_2:11841449-11841468 Msa0589240:CDS 45.0%
TTGGCAGACAATGTAGATGG+TGG + chr4_2:11841452-11841471 Msa0589240:CDS 45.0%
TGGCAGACAATGTAGATGGT+GGG + chr4_2:11841453-11841472 Msa0589240:CDS 45.0%
AATATCCTACCTTGAGGGGA+TGG - chr4_2:11841547-11841566 None:intergenic 45.0%
CAATCTCCATGCCTGAAACA+TGG - chr4_2:11841619-11841638 None:intergenic 45.0%
AGATACCCATCTGGTCATCA+AGG + chr4_2:11841771-11841790 Msa0589240:CDS 45.0%
! ATGGTCCTTGATGACCAGAT+GGG - chr4_2:11841779-11841798 None:intergenic 45.0%
! TATGGTCCTTGATGACCAGA+TGG - chr4_2:11841780-11841799 None:intergenic 45.0%
GATGGGAACTTACAGTGACA+TGG - chr4_2:11841803-11841822 None:intergenic 45.0%
! TCTCTCCTTGGTAATTGCCA+GGG - chr4_2:11841926-11841945 None:intergenic 45.0%
AACCAGACCTATTATCAGCC+TGG + chr4_2:11841960-11841979 Msa0589240:CDS 45.0%
TACCAGGCTGATAATAGGTC+TGG - chr4_2:11841965-11841984 None:intergenic 45.0%
TCGAATTAAGCTGCCAACTG+TGG + chr4_2:11841989-11842008 Msa0589240:CDS 45.0%
CGAATTAAGCTGCCAACTGT+GGG + chr4_2:11841990-11842009 Msa0589240:CDS 45.0%
! AAGGACCACAGGAACAGTTT+TGG + chr4_2:11842016-11842035 Msa0589240:CDS 45.0%
!! AGGAACAGTTTTGGTCGAGA+TGG + chr4_2:11842025-11842044 Msa0589240:CDS 45.0%
CTTCCAATGCTTGGGATGTT+TGG + chr4_2:11842134-11842153 Msa0589240:CDS 45.0%
ACACCAAACATCCCAAGCAT+TGG - chr4_2:11842140-11842159 None:intergenic 45.0%
GAAAATGATGGCAATGGCAC+TGG - chr4_2:11842188-11842207 None:intergenic 45.0%
TACGTGATCAAAGCTCACTG+CGG - chr4_2:11842317-11842336 None:intergenic 45.0%
! CTTTGGTTCAGGGATAGTTG+AGG + chr4_2:11842374-11842393 Msa0589240:three_prime_UTR 45.0%
!! ACAATGGCGGCTTTGTTGTG+TGG - chr4_2:11837951-11837970 None:intergenic 50.0%
TGCTGCTGCAAATGCACCAA+CGG + chr4_2:11838172-11838191 Msa0589240:CDS 50.0%
CAGAGACAACGTTGCTCTCA+AGG + chr4_2:11838710-11838729 Msa0589240:CDS 50.0%
CTCAAGGGACTTGCCAAGTA+AGG + chr4_2:11838726-11838745 Msa0589240:intron 50.0%
GAAATGGCCGAGATTCAAGC+AGG + chr4_2:11840161-11840180 Msa0589240:CDS 50.0%
GGAGAAGCCGGAGACTATAA+TGG + chr4_2:11840572-11840591 Msa0589240:intron 50.0%
TCACCAATAGTTGGAGCCTG+TGG - chr4_2:11841050-11841069 None:intergenic 50.0%
! ATTGGTGATATCGACGGGGA+TGG + chr4_2:11841062-11841081 Msa0589240:CDS 50.0%
GGAAGGGATGGATCACCTAT+TGG + chr4_2:11841137-11841156 Msa0589240:CDS 50.0%
GGGATGGATCACCTATTGGA+CGG + chr4_2:11841141-11841160 Msa0589240:CDS 50.0%
AGCCTGTAGGTCCATCAATG+AGG - chr4_2:11841286-11841305 None:intergenic 50.0%
ACAACATCAGCACAGCCTGT+AGG - chr4_2:11841299-11841318 None:intergenic 50.0%
GGCAGACAATGTAGATGGTG+GGG + chr4_2:11841454-11841473 Msa0589240:CDS 50.0%
GCATGGAGATTGCCTAACCA+AGG + chr4_2:11841627-11841646 Msa0589240:CDS 50.0%
TCATCACGGAAAGCCCTTGA+AGG - chr4_2:11841705-11841724 None:intergenic 50.0%
TTCAAGGGCTTTCCGTGATG+AGG + chr4_2:11841704-11841723 Msa0589240:CDS 50.0%
GTAATTGCCAGGGACAAGCA+AGG - chr4_2:11841916-11841935 None:intergenic 50.0%
CTTGTCCCTGGCAATTACCA+AGG + chr4_2:11841918-11841937 Msa0589240:CDS 50.0%
! CTCTCTCCTTGGTAATTGCC+AGG - chr4_2:11841927-11841946 None:intergenic 50.0%
CTCGACCAAAACTGTTCCTG+TGG - chr4_2:11842024-11842043 None:intergenic 50.0%
CTGAGGGAGGGCTCACAATA+GGG - chr4_2:11839315-11839334 None:intergenic 55.0%
TCTGAGGGAGGGCTCACAAT+AGG - chr4_2:11839316-11839335 None:intergenic 55.0%
GTTGTTGCATGGACCCCCAA+AGG + chr4_2:11840251-11840270 Msa0589240:CDS 55.0%
!! CCTTGTCGAGAGCACCACTT+TGG - chr4_2:11840536-11840555 None:intergenic 55.0%
CCAAAGTGGTGCTCTCGACA+AGG + chr4_2:11840533-11840552 Msa0589240:intron 55.0%
TTGAGGGGATGGTGAGGTGA+GGG - chr4_2:11841536-11841555 None:intergenic 55.0%
GCAAATCGGTACGGTCGTGA+AGG + chr4_2:11841663-11841682 Msa0589240:CDS 55.0%
AGGGCTTTCCGTGATGAGGA+AGG + chr4_2:11841708-11841727 Msa0589240:CDS 55.0%
CAGACTTCCTTGCTTGTCCC+TGG + chr4_2:11841906-11841925 Msa0589240:intron 55.0%
AGCTGCCAACTGTGGGAGTA+AGG + chr4_2:11841997-11842016 Msa0589240:CDS 55.0%
GTGGTCCTTACTCCCACAGT+TGG - chr4_2:11842005-11842024 None:intergenic 55.0%
ACTGTGGGAGTAAGGACCAC+AGG + chr4_2:11842005-11842024 Msa0589240:CDS 55.0%
CTTGTCATCCTTCGCCCACA+AGG + chr4_2:11842161-11842180 Msa0589240:CDS 55.0%
CTTGAGGGGATGGTGAGGTG+AGG - chr4_2:11841537-11841556 None:intergenic 60.0%
CTCACCTCACCATCCCCTCA+AGG + chr4_2:11841535-11841554 Msa0589240:CDS 60.0%
CCTACCTTGAGGGGATGGTG+AGG - chr4_2:11841542-11841561 None:intergenic 60.0%
CCTCACCATCCCCTCAAGGT+AGG + chr4_2:11841539-11841558 Msa0589240:intron 60.0%
! GCAATGGCACTGGGCCTTGT+GGG - chr4_2:11842178-11842197 None:intergenic 60.0%
CCTGAGCTCAATGGTGTGCC+TGG - chr4_2:11842250-11842269 None:intergenic 60.0%
CCAGGCACACCATTGAGCTC+AGG + chr4_2:11842247-11842266 Msa0589240:three_prime_UTR 60.0%
AAAGCTCACTGCGGCACCCA+GGG - chr4_2:11842308-11842327 None:intergenic 60.0%
! GGCAATGGCACTGGGCCTTG+TGG - chr4_2:11842179-11842198 None:intergenic 65.0%
CAAAGCTCACTGCGGCACCC+AGG - chr4_2:11842309-11842328 None:intergenic 65.0%
! GCACTGGGCCTTGTGGGCGA+AGG - chr4_2:11842172-11842191 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11837944 11842717 11837944 ID=Msa0589240;Name=Msa0589240
chr4_2 mRNA 11837944 11842717 11837944 ID=Msa0589240-mRNA-1;Parent=Msa0589240;Name=Msa0589240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=94|0.87|0.88|1|1|1|9|494|535
chr4_2 exon 11837944 11838330 11837944 ID=Msa0589240-mRNA-1:exon:3479;Parent=Msa0589240-mRNA-1
chr4_2 exon 11838659 11838742 11838659 ID=Msa0589240-mRNA-1:exon:3480;Parent=Msa0589240-mRNA-1
chr4_2 exon 11838853 11838913 11838853 ID=Msa0589240-mRNA-1:exon:3481;Parent=Msa0589240-mRNA-1
chr4_2 exon 11839283 11839370 11839283 ID=Msa0589240-mRNA-1:exon:3482;Parent=Msa0589240-mRNA-1
chr4_2 exon 11840135 11840316 11840135 ID=Msa0589240-mRNA-1:exon:3483;Parent=Msa0589240-mRNA-1
chr4_2 exon 11841053 11841336 11841053 ID=Msa0589240-mRNA-1:exon:3484;Parent=Msa0589240-mRNA-1
chr4_2 exon 11841439 11841556 11841439 ID=Msa0589240-mRNA-1:exon:3485;Parent=Msa0589240-mRNA-1
chr4_2 exon 11841627 11841809 11841627 ID=Msa0589240-mRNA-1:exon:3486;Parent=Msa0589240-mRNA-1
chr4_2 exon 11841909 11842717 11841909 ID=Msa0589240-mRNA-1:exon:3487;Parent=Msa0589240-mRNA-1
chr4_2 five_prime_UTR 11837944 11838037 11837944 ID=Msa0589240-mRNA-1:five_prime_utr;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11838038 11838330 11838038 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11838659 11838742 11838659 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11838853 11838913 11838853 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11839283 11839370 11839283 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11840135 11840316 11840135 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11841053 11841336 11841053 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11841439 11841556 11841439 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11841627 11841809 11841627 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 CDS 11841909 11842223 11841909 ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1
chr4_2 three_prime_UTR 11842224 11842717 11842224 ID=Msa0589240-mRNA-1:three_prime_utr;Parent=Msa0589240-mRNA-1
Gene Sequence

>Msa0589240

ATGGCTCTTTCAGCTTCCAAAGTTTCGATCTTTTCACCATCACCTATCGTGGGTCATTTCTCAAAAAACACCACTTTTTCTTCTTTGAATCTTCCTATGGATGGTGATAAGAGGAAGAACGTGAAGGTTCATGCTGCTGCTGCAAATGCACCAACGGCATTAACTGGTGTTATCTTTGAACCGTTTGAAGAAGTCAAGAAAGATGTTCTTGCTGTTCCTATTGCTCATAATGTTTCTTTGGCTCGTCAGAATTATCAAGATGAAGTTGAATCTGCTATCAATGAACAGATTAATGTGGAATACAATGTTTCCTATGTGTACCACTCTTTGTTTGCATACTTTGACAGAGACAACGTTGCTCTCAAGGGACTTGCCAAGTTCTTTAAGGAATCTAGTGAGGAAGAAAGAGAGCATGCTGAGAAGCTCATGAAATACCAGAATATTCGTGGTGGAAGAGTGGTGCTGCACCCTATTGTGAGCCCTCCCTCAGAATTTGATCATGCAGAAAAGGGAGATGCATTGTATGGTAAAGTTAGAGAGAAGTTCCCTCTTGAAATGGCCGAGATTCAAGCAGGTGTTGTTGCAGCTGATATTAATGATGATGGAAAAATTGAGCTAGTTACTGCTGATACCCATGGAAATGTTGTTGCATGGACCCCCAAAGGAGATATGATTTGGGAAAAGCATCTGAAGAGTCTTATTCCACATGCTCCAACTATTGGTGATATCGACGGGGATGGCCGTACTGAGCTTGTTGTACCAACACTATCTGGGAAGATTCATGTTCTTGATGGAAGGGATGGATCACCTATTGGACGGTACCCATTTATAACTCATGGAAGAATAATGAATCAAATTCTTCTTGTTGATTTAAGTAAACAGAAGGAAAAGAAGAAGGGATTGACCCTTGTTACCTCTTCGTTTGATGGTTATTTGTACCTCATTGATGGACCTACAGGCTGTGCTGATGTTGTTGACATTGGTGAAACTTCATATAGCATGGTCTTGGCAGACAATGTAGATGGTGGGGATGATCTTGATCTGATTGTCTCGACAATGAATGGCAACGTCTTCTGCTTCTCGACTCCCTCACCTCACCATCCCCTCAAGGCATGGAGATTGCCTAACCAAGGAAGAAATAATGTTGCAAATCGGTACGGTCGTGAAGGCATCTATGTAACTCATCCTTCAAGGGCTTTCCGTGATGAGGAAGGAAAGAGTTTTTTTGTGGAAATTGAGATTGTAGATAATTATAGATACCCATCTGGTCATCAAGGACCATACCATGTCACTACTTCCTTGCTTGTCCCTGGCAATTACCAAGGAGAGAGAACAATAAAGCAGAACCAGACCTATTATCAGCCTGGTAAACATCGAATTAAGCTGCCAACTGTGGGAGTAAGGACCACAGGAACAGTTTTGGTCGAGATGGTTGACAAAAATGGACTCTATTTCTCTGATGAATTCTCTCTTACATTCCATATGCACTACTATAAATTGTTGAAGTGGCTTCTTGTTCTTCCAATGCTTGGGATGTTTGGTGTGCTTGTCATCCTTCGCCCACAAGGCCCAGTGCCATTGCCATCATTTTCAAGGAACAACGATTAG

Protein sequence

>Msa0589240

MALSASKVSIFSPSPIVGHFSKNTTFSSLNLPMDGDKRKNVKVHAAAANAPTALTGVIFEPFEEVKKDVLAVPIAHNVSLARQNYQDEVESAINEQINVEYNVSYVYHSLFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMKYQNIRGGRVVLHPIVSPPSEFDHAEKGDALYGKVREKFPLEMAEIQAGVVAADINDDGKIELVTADTHGNVVAWTPKGDMIWEKHLKSLIPHAPTIGDIDGDGRTELVVPTLSGKIHVLDGRDGSPIGRYPFITHGRIMNQILLVDLSKQKEKKKGLTLVTSSFDGYLYLIDGPTGCADVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRLPNQGRNNVANRYGREGIYVTHPSRAFRDEEGKSFFVEIEIVDNYRYPSGHQGPYHVTTSLLVPGNYQGERTIKQNQTYYQPGKHRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMLGMFGVLVILRPQGPVPLPSFSRNND*