Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0589240 | XP_003604604.2 | 99.723 | 361 | 1 | 0 | 175 | 535 | 513 | 873 | 0.0 | 760 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0589240 | sp|F4IYM4|DEX1_ARATH | 79.722 | 360 | 73 | 0 | 176 | 535 | 536 | 895 | 0.0 | 619 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0589240 | G7JLW6 | 99.723 | 361 | 1 | 0 | 175 | 535 | 513 | 873 | 0.0 | 760 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0589240 | Msa0667040 | 0.832264 | 1.043728e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0589240 | MtrunA17_Chr4g0005831 | 99.723 | 361 | 1 | 0 | 175 | 535 | 513 | 873 | 0.0 | 760 |
Msa0589240 | MtrunA17_Chr4g0005581 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 1.48e-120 | 355 |
Msa0589240 | MtrunA17_Chr7g0243241 | 71.508 | 179 | 46 | 2 | 1 | 176 | 1 | 177 | 2.26e-75 | 239 |
Msa0589240 | MtrunA17_Chr5g0437531 | 66.667 | 147 | 48 | 1 | 31 | 176 | 24 | 170 | 7.52e-57 | 190 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0589240 | AT3G09090.1 | 79.722 | 360 | 73 | 0 | 176 | 535 | 536 | 895 | 0.0 | 619 |
Msa0589240 | AT3G09090.3 | 79.646 | 339 | 69 | 0 | 176 | 514 | 536 | 874 | 0.0 | 584 |
Msa0589240 | AT3G09090.2 | 77.734 | 256 | 57 | 0 | 176 | 431 | 536 | 791 | 1.06e-143 | 434 |
Msa0589240 | AT2G40300.1 | 66.225 | 151 | 49 | 1 | 28 | 176 | 34 | 184 | 2.45e-61 | 202 |
Msa0589240 | AT5G01600.1 | 77.236 | 123 | 28 | 0 | 54 | 176 | 59 | 181 | 3.68e-61 | 202 |
Msa0589240 | AT3G56090.1 | 75.207 | 121 | 30 | 0 | 56 | 176 | 62 | 182 | 1.09e-55 | 188 |
Msa0589240 | AT3G11050.1 | 66.418 | 134 | 45 | 0 | 43 | 176 | 43 | 176 | 2.81e-53 | 181 |
Msa0589240 | AT3G61010.1 | 70.000 | 50 | 15 | 0 | 97 | 146 | 369 | 418 | 3.10e-14 | 75.5 |
Msa0589240 | AT3G61010.3 | 70.000 | 50 | 15 | 0 | 97 | 146 | 369 | 418 | 3.10e-14 | 75.5 |
Find 171 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTTCCATGAGTTATAAA+TGG | 0.174312 | 4_2:-11841167 | None:intergenic |
TATTGCTCATAATGTTTCTT+TGG | 0.198410 | 4_2:+11838256 | Msa0589240:CDS |
ATACAGTAACATGAGATTTA+TGG | 0.205856 | 4_2:+11842606 | Msa0589240:three_prime_UTR |
TGTGGATAACAGGTTCTTTA+AGG | 0.220356 | 4_2:+11838841 | Msa0589240:intron |
CTTGTTACCTCTTCGTTTGA+TGG | 0.250632 | 4_2:+11841251 | Msa0589240:CDS |
TCCCAAATCATATCTCCTTT+GGG | 0.256362 | 4_2:-11840266 | None:intergenic |
TTCCCAAATCATATCTCCTT+TGG | 0.267264 | 4_2:-11840267 | None:intergenic |
CTTGTTGTACCAACACTATC+TGG | 0.277612 | 4_2:+11841095 | Msa0589240:CDS |
CTTCTTGTTCTTCCAATGCT+TGG | 0.288511 | 4_2:+11842125 | Msa0589240:CDS |
ATTAAAGAAGAATAACAAAA+AGG | 0.290976 | 4_2:-11838017 | None:intergenic |
CTTCCAATGCTTGGGATGTT+TGG | 0.309012 | 4_2:+11842134 | Msa0589240:CDS |
TTCTTGTTCTTCCAATGCTT+GGG | 0.326042 | 4_2:+11842126 | Msa0589240:CDS |
TCTGATTACACTACACATAA+AGG | 0.333065 | 4_2:-11842438 | None:intergenic |
TTTCCACAGGCTCCAACTAT+TGG | 0.335598 | 4_2:+11841044 | Msa0589240:intron |
CTCTCTCCTTGGTAATTGCC+AGG | 0.340762 | 4_2:-11841924 | None:intergenic |
GTTGTATTGTTAACTAGTTT+TGG | 0.348377 | 4_2:+11842551 | Msa0589240:three_prime_UTR |
ACAATTTATAGTAGTGCATA+TGG | 0.353288 | 4_2:-11842094 | None:intergenic |
GCTTTATTGTTCTCTCTCCT+TGG | 0.354570 | 4_2:-11841935 | None:intergenic |
AGAATCATTTGTTCAAGCTT+TGG | 0.360643 | 4_2:+11842357 | Msa0589240:three_prime_UTR |
AATGCACCAACGGCATTAAC+TGG | 0.362157 | 4_2:+11838182 | Msa0589240:CDS |
AAGGGCAAAATTCCAATATC+AGG | 0.365226 | 4_2:-11842419 | None:intergenic |
ATGTTTACCAGGCTGATAAT+AGG | 0.371318 | 4_2:-11841967 | None:intergenic |
TTGCAACATTATTTCTTCCT+TGG | 0.372211 | 4_2:-11841644 | None:intergenic |
AAAGAAACATTATGAGCAAT+AGG | 0.377860 | 4_2:-11838254 | None:intergenic |
GGGAAGATTCATGTTCTTGA+TGG | 0.378492 | 4_2:+11841116 | Msa0589240:CDS |
AGTGAATGAGATCCTGATAT+TGG | 0.378778 | 4_2:+11842407 | Msa0589240:three_prime_UTR |
ACATTATTTCTTCCTTGGTT+AGG | 0.389436 | 4_2:-11841639 | None:intergenic |
AGAATTTGATCATGCAGAAA+AGG | 0.391733 | 4_2:+11839333 | Msa0589240:CDS |
TCTGAGGGAGGGCTCACAAT+AGG | 0.396058 | 4_2:-11839313 | None:intergenic |
GGTTATTTGTACCTCATTGA+TGG | 0.398016 | 4_2:+11841272 | Msa0589240:CDS |
AAGGACCACAGGAACAGTTT+TGG | 0.401580 | 4_2:+11842016 | Msa0589240:CDS |
CCTGAGCTCAATGGTGTGCC+TGG | 0.404708 | 4_2:-11842247 | None:intergenic |
TTCTTCTTTGAATCTTCCTA+TGG | 0.409275 | 4_2:+11838115 | Msa0589240:CDS |
GAAAATGATGGCAATGGCAC+TGG | 0.417978 | 4_2:-11842185 | None:intergenic |
TTCTTCCATGAGTTATAAAT+GGG | 0.418307 | 4_2:-11841166 | None:intergenic |
GCAATGGCACTGGGCCTTGT+GGG | 0.420539 | 4_2:-11842175 | None:intergenic |
GGAAGGGATGGATCACCTAT+TGG | 0.420696 | 4_2:+11841137 | Msa0589240:CDS |
ATTTGTTCAAGCTTTGGTTC+AGG | 0.421642 | 4_2:+11842363 | Msa0589240:three_prime_UTR |
CAGACTTCCTTGCTTGTCCC+TGG | 0.428768 | 4_2:+11841906 | Msa0589240:intron |
TAAACAGAAGGAAAAGAAGA+AGG | 0.440987 | 4_2:+11841220 | Msa0589240:CDS |
TTTGTTCAAGCTTTGGTTCA+GGG | 0.443656 | 4_2:+11842364 | Msa0589240:three_prime_UTR |
CTGAGGGAGGGCTCACAATA+GGG | 0.446437 | 4_2:-11839312 | None:intergenic |
AGCTGCCAACTGTGGGAGTA+AGG | 0.450842 | 4_2:+11841997 | Msa0589240:CDS |
ATGCAGATATAGCATGGTCT+TGG | 0.451107 | 4_2:+11841433 | Msa0589240:intron |
GAAAATTGAGAAAGGATTGA+AGG | 0.454323 | 4_2:-11837986 | None:intergenic |
TACCAGGCTGATAATAGGTC+TGG | 0.454949 | 4_2:-11841962 | None:intergenic |
GGCAATGGCACTGGGCCTTG+TGG | 0.456896 | 4_2:-11842176 | None:intergenic |
AGAGAAGTTCCCTCTTGAAA+TGG | 0.464654 | 4_2:+11840145 | Msa0589240:CDS |
TCTTTGAATCTTCCTATGGA+TGG | 0.467506 | 4_2:+11838119 | Msa0589240:CDS |
CCCAAATCATATCTCCTTTG+GGG | 0.469336 | 4_2:-11840265 | None:intergenic |
CCCCAAAGGAGATATGATTT+GGG | 0.470564 | 4_2:+11840265 | Msa0589240:CDS |
ATAAATGGGTACCGTCCAAT+AGG | 0.470788 | 4_2:-11841152 | None:intergenic |
CTGATTACACTACACATAAA+GGG | 0.470881 | 4_2:-11842437 | None:intergenic |
TCTATGTAACTCATCCTTCA+AGG | 0.472281 | 4_2:+11841688 | Msa0589240:CDS |
GTCGTTGAGAAAATTGAGAA+AGG | 0.472968 | 4_2:-11837994 | None:intergenic |
CAACTATTGGTGATATCGAC+GGG | 0.476817 | 4_2:+11841057 | Msa0589240:CDS |
AGCTTAATTCGATGTTTACC+AGG | 0.476834 | 4_2:-11841978 | None:intergenic |
TTGAAAATATCCTACCTTGA+GGG | 0.477548 | 4_2:-11841549 | None:intergenic |
CGGTACCCATTTATAACTCA+TGG | 0.479180 | 4_2:+11841161 | Msa0589240:CDS |
TTTGGTTCAGGGATAGTTGA+GGG | 0.479347 | 4_2:+11842375 | Msa0589240:three_prime_UTR |
ACATCAAATTGAGTTATCCC+TGG | 0.479391 | 4_2:+11842288 | Msa0589240:three_prime_UTR |
TGATTTGCTTAGAATATTCG+TGG | 0.482145 | 4_2:+11839271 | Msa0589240:intron |
CAGAGACAACGTTGCTCTCA+AGG | 0.486549 | 4_2:+11838710 | Msa0589240:CDS |
TCATCACGGAAAGCCCTTGA+AGG | 0.491356 | 4_2:-11841702 | None:intergenic |
TACCTCATTGATGGACCTAC+AGG | 0.491627 | 4_2:+11841281 | Msa0589240:CDS |
GAAGAAATAATGTTGCAAAT+CGG | 0.499551 | 4_2:+11841649 | Msa0589240:CDS |
TTCACATTTCCTGAGCTCAA+TGG | 0.500529 | 4_2:-11842256 | None:intergenic |
AAAATTGAGAAAGGATTGAA+GGG | 0.503267 | 4_2:-11837985 | None:intergenic |
AGGATTGAAGGGAAGAGAGA+TGG | 0.503549 | 4_2:-11837974 | None:intergenic |
GATAATTATAGATACCCATC+TGG | 0.503686 | 4_2:+11841762 | Msa0589240:CDS |
AAACAGAAGGAAAAGAAGAA+GGG | 0.505045 | 4_2:+11841221 | Msa0589240:CDS |
TTCCTATGGATGGTGATAAG+AGG | 0.508563 | 4_2:+11838129 | Msa0589240:CDS |
CAAAGCTCACTGCGGCACCC+AGG | 0.508968 | 4_2:-11842306 | None:intergenic |
CTGATTGTCTCGACAATGAA+TGG | 0.509054 | 4_2:+11841488 | Msa0589240:CDS |
CATCAAATTGAGTTATCCCT+GGG | 0.511777 | 4_2:+11842289 | Msa0589240:three_prime_UTR |
TGGTGAAAAGATCGAAACTT+TGG | 0.511973 | 4_2:-11838054 | None:intergenic |
TCTTTCTTGACTTCTTCAAA+CGG | 0.514880 | 4_2:-11838218 | None:intergenic |
CATGTTCTTGATGGAAGGGA+TGG | 0.519262 | 4_2:+11841125 | Msa0589240:CDS |
CTTGTCATCCTTCGCCCACA+AGG | 0.519562 | 4_2:+11842161 | Msa0589240:CDS |
GAATTTGATCATGCAGAAAA+GGG | 0.523661 | 4_2:+11839334 | Msa0589240:CDS |
AGATTCATGTTCTTGATGGA+AGG | 0.524196 | 4_2:+11841120 | Msa0589240:CDS |
AACTCTTTCCTTCCTCATCA+CGG | 0.525602 | 4_2:-11841716 | None:intergenic |
TGAAAATATCCTACCTTGAG+GGG | 0.528195 | 4_2:-11841548 | None:intergenic |
ACTACTATAAATTGTTGAAG+TGG | 0.530048 | 4_2:+11842102 | Msa0589240:CDS |
CCAAATCATATCTCCTTTGG+GGG | 0.530327 | 4_2:-11840264 | None:intergenic |
GCAGCTGATATTAATGATGA+TGG | 0.531122 | 4_2:+11840191 | Msa0589240:CDS |
TCTCTCCTTGGTAATTGCCA+GGG | 0.532602 | 4_2:-11841923 | None:intergenic |
TCGAATTAAGCTGCCAACTG+TGG | 0.533264 | 4_2:+11841989 | Msa0589240:CDS |
TCGTTGTTCCTTGAAAATGA+TGG | 0.536141 | 4_2:-11842197 | None:intergenic |
TGTTGATTTAAGTAAACAGA+AGG | 0.539500 | 4_2:+11841208 | Msa0589240:CDS |
TCCATGCAACAACATTTCCA+TGG | 0.540039 | 4_2:-11840241 | None:intergenic |
TTCTGCATGATCAAATTCTG+AGG | 0.542218 | 4_2:-11839329 | None:intergenic |
CCAGGCACACCATTGAGCTC+AGG | 0.544197 | 4_2:+11842247 | Msa0589240:three_prime_UTR |
TTCAAGGGCTTTCCGTGATG+AGG | 0.545086 | 4_2:+11841704 | Msa0589240:CDS |
AATATCCTACCTTGAGGGGA+TGG | 0.546249 | 4_2:-11841544 | None:intergenic |
CCGTCGATATCACCAATAGT+TGG | 0.547051 | 4_2:-11841056 | None:intergenic |
GCACTGGGCCTTGTGGGCGA+AGG | 0.550344 | 4_2:-11842169 | None:intergenic |
TCTGCATGATCAAATTCTGA+GGG | 0.551161 | 4_2:-11839328 | None:intergenic |
GTCTTGGCAGACAATGTAGA+TGG | 0.554460 | 4_2:+11841449 | Msa0589240:CDS |
AACAACACCTGCTTGAATCT+CGG | 0.554490 | 4_2:-11840168 | None:intergenic |
AACCAGACCTATTATCAGCC+TGG | 0.554997 | 4_2:+11841960 | Msa0589240:CDS |
TTGTTGTACCAACACTATCT+GGG | 0.556727 | 4_2:+11841096 | Msa0589240:CDS |
GATTCATGTTCTTGATGGAA+GGG | 0.557088 | 4_2:+11841121 | Msa0589240:CDS |
CGAATTAAGCTGCCAACTGT+GGG | 0.559486 | 4_2:+11841990 | Msa0589240:CDS |
TTGAGGGGATGGTGAGGTGA+GGG | 0.560431 | 4_2:-11841533 | None:intergenic |
TGGCAGACAATGTAGATGGT+GGG | 0.562085 | 4_2:+11841453 | Msa0589240:CDS |
AGATACCCATCTGGTCATCA+AGG | 0.562292 | 4_2:+11841771 | Msa0589240:CDS |
CATCAAACGAAGAGGTAACA+AGG | 0.562691 | 4_2:-11841250 | None:intergenic |
TTTGAGAAATGACCCACGAT+AGG | 0.571890 | 4_2:-11838080 | None:intergenic |
TGTGCTGATGTTGTTGACAT+TGG | 0.572184 | 4_2:+11841305 | Msa0589240:CDS |
CTTTGATCACGTAGTCAAAG+TGG | 0.572192 | 4_2:+11842324 | Msa0589240:three_prime_UTR |
AAAATGATGGCAATGGCACT+GGG | 0.576438 | 4_2:-11842184 | None:intergenic |
CTTTGGTTCAGGGATAGTTG+AGG | 0.576905 | 4_2:+11842374 | Msa0589240:three_prime_UTR |
CAAAGTATGCAAACAAAGAG+TGG | 0.577867 | 4_2:-11838686 | None:intergenic |
GAACTTACAGTGACATGGTA+TGG | 0.578989 | 4_2:-11841795 | None:intergenic |
ACACCAAACATCCCAAGCAT+TGG | 0.580558 | 4_2:-11842137 | None:intergenic |
ACAATGGCGGCTTTGTTGTG+TGG | 0.583638 | 4_2:-11837948 | None:intergenic |
AGGGCTTTCCGTGATGAGGA+AGG | 0.583864 | 4_2:+11841708 | Msa0589240:CDS |
TGAATCTCGGCCATTTCAAG+AGG | 0.584486 | 4_2:-11840155 | None:intergenic |
CCAACTATTGGTGATATCGA+CGG | 0.586361 | 4_2:+11841056 | Msa0589240:CDS |
CTAGTTACTGCTGATACCCA+TGG | 0.586395 | 4_2:+11840224 | Msa0589240:CDS |
GTGGTCCTTACTCCCACAGT+TGG | 0.587468 | 4_2:-11842002 | None:intergenic |
GAAAAGGGAGATGCATTGTA+TGG | 0.589420 | 4_2:+11839349 | Msa0589240:CDS |
TGCTGCTGCAAATGCACCAA+CGG | 0.590613 | 4_2:+11838172 | Msa0589240:CDS |
CTCGACCAAAACTGTTCCTG+TGG | 0.591060 | 4_2:-11842021 | None:intergenic |
ATTGGTGATATCGACGGGGA+TGG | 0.591949 | 4_2:+11841062 | Msa0589240:CDS |
AGAGACAACGTTGCTCTCAA+GGG | 0.594095 | 4_2:+11838711 | Msa0589240:CDS |
AAAGCTCACTGCGGCACCCA+GGG | 0.595695 | 4_2:-11842305 | None:intergenic |
TTCCTCTTATCACCATCCAT+AGG | 0.596094 | 4_2:-11838131 | None:intergenic |
CCATGCAACAACATTTCCAT+GGG | 0.597707 | 4_2:-11840240 | None:intergenic |
CTATGTAACTCATCCTTCAA+GGG | 0.598298 | 4_2:+11841689 | Msa0589240:CDS |
CTTGAGGGGATGGTGAGGTG+AGG | 0.598439 | 4_2:-11841534 | None:intergenic |
GCAAATCGGTACGGTCGTGA+AGG | 0.603856 | 4_2:+11841663 | Msa0589240:CDS |
CATGATCAAATTCTGAGGGA+GGG | 0.603900 | 4_2:-11839324 | None:intergenic |
ACTGTGGGAGTAAGGACCAC+AGG | 0.604153 | 4_2:+11842005 | Msa0589240:CDS |
TTGGCAGACAATGTAGATGG+TGG | 0.604254 | 4_2:+11841452 | Msa0589240:CDS |
CCCATGGAAATGTTGTTGCA+TGG | 0.605735 | 4_2:+11840240 | Msa0589240:CDS |
CTCACCTCACCATCCCCTCA+AGG | 0.605790 | 4_2:+11841535 | Msa0589240:CDS |
GCATGATCAAATTCTGAGGG+AGG | 0.609988 | 4_2:-11839325 | None:intergenic |
TTGGTTTCAACTTTACGATG+TGG | 0.614299 | 4_2:+11842570 | Msa0589240:three_prime_UTR |
GAAATGGCCGAGATTCAAGC+AGG | 0.614578 | 4_2:+11840161 | Msa0589240:CDS |
GAATATTCGTGGTGGAAGAG+TGG | 0.615684 | 4_2:+11839282 | Msa0589240:intron |
GTTCTTTAAGGAATCTAGTG+AGG | 0.615734 | 4_2:+11838853 | Msa0589240:CDS |
TTCCTTGAAAATGATGGCAA+TGG | 0.615790 | 4_2:-11842191 | None:intergenic |
TTGGTACAACAAGCTCAGTA+CGG | 0.621516 | 4_2:-11841085 | None:intergenic |
CTTGTCCCTGGCAATTACCA+AGG | 0.622404 | 4_2:+11841918 | Msa0589240:CDS |
ATAACACCAGTTAATGCCGT+TGG | 0.628331 | 4_2:-11838188 | None:intergenic |
CAAATAACCATCAAACGAAG+AGG | 0.628486 | 4_2:-11841258 | None:intergenic |
AATAATGTTGCAAATCGGTA+CGG | 0.629908 | 4_2:+11841654 | Msa0589240:CDS |
TATGGTCCTTGATGACCAGA+TGG | 0.631810 | 4_2:-11841777 | None:intergenic |
GGCAGACAATGTAGATGGTG+GGG | 0.633931 | 4_2:+11841454 | Msa0589240:CDS |
TGAATCTTCCCAGATAGTGT+TGG | 0.640555 | 4_2:-11841104 | None:intergenic |
AAACAAAGAGTGGTACACAT+AGG | 0.641518 | 4_2:-11838676 | None:intergenic |
GGGATGGATCACCTATTGGA+CGG | 0.641758 | 4_2:+11841141 | Msa0589240:CDS |
GTAATTGCCAGGGACAAGCA+AGG | 0.643916 | 4_2:-11841913 | None:intergenic |
CCTACCTTGAGGGGATGGTG+AGG | 0.643978 | 4_2:-11841539 | None:intergenic |
GATGGGAACTTACAGTGACA+TGG | 0.645843 | 4_2:-11841800 | None:intergenic |
TGAGAAGCTCATGAAATACC+AGG | 0.648725 | 4_2:+11838892 | Msa0589240:CDS |
GAATCTCGGCCATTTCAAGA+GGG | 0.650459 | 4_2:-11840154 | None:intergenic |
AGCCTGTAGGTCCATCAATG+AGG | 0.655462 | 4_2:-11841283 | None:intergenic |
GCATGGAGATTGCCTAACCA+AGG | 0.658526 | 4_2:+11841627 | Msa0589240:CDS |
AGAGAGATGGTTAACAATGG+CGG | 0.662971 | 4_2:-11837961 | None:intergenic |
ATGGTCCTTGATGACCAGAT+GGG | 0.674700 | 4_2:-11841776 | None:intergenic |
AAATGACCCACGATAGGTGA+TGG | 0.680438 | 4_2:-11838074 | None:intergenic |
ACAACATCAGCACAGCCTGT+AGG | 0.681376 | 4_2:-11841296 | None:intergenic |
TGATAAGAGGAAGAACGTGA+AGG | 0.682141 | 4_2:+11838142 | Msa0589240:CDS |
GGAAGAGAGATGGTTAACAA+TGG | 0.682755 | 4_2:-11837964 | None:intergenic |
TTTGCTTAGAATATTCGTGG+TGG | 0.687765 | 4_2:+11839274 | Msa0589240:intron |
ATCAAACGAAGAGGTAACAA+GGG | 0.688966 | 4_2:-11841249 | None:intergenic |
AACTATTGGTGATATCGACG+GGG | 0.720915 | 4_2:+11841058 | Msa0589240:CDS |
TACGTGATCAAAGCTCACTG+CGG | 0.755579 | 4_2:-11842314 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATCAAATATATATTTTCTT+TGG | + | chr4_2:11840072-11840091 | Msa0589240:intron | 10.0% |
!! | TTAAAGAAGAATAACAAAAA+GGG | - | chr4_2:11838019-11838038 | None:intergenic | 15.0% |
!! | ATTAAAGAAGAATAACAAAA+AGG | - | chr4_2:11838020-11838039 | None:intergenic | 15.0% |
!!! | TTTTTGTTATTCTTCTTTAA+TGG | + | chr4_2:11838019-11838038 | Msa0589240:exon | 15.0% |
!!! | ATTATTTACTTTTTGCTTTT+TGG | + | chr4_2:11838399-11838418 | Msa0589240:intron | 15.0% |
!!! | TTAACATATAATGATTTTAG+AGG | - | chr4_2:11839193-11839212 | None:intergenic | 15.0% |
!!! | TTTTTTTTATAAGCTCAATT+AGG | + | chr4_2:11839962-11839981 | Msa0589240:intron | 15.0% |
!!! | TTTTTTTATAAGCTCAATTA+GGG | + | chr4_2:11839963-11839982 | Msa0589240:intron | 15.0% |
!! | TTATGATTCACAAAAAAAAA+AGG | - | chr4_2:11839989-11840008 | None:intergenic | 15.0% |
!!! | TTTTTTTGTGAATCATAATT+AGG | + | chr4_2:11839991-11840010 | Msa0589240:intron | 15.0% |
!!! | TTTTTTGTGAATCATAATTA+GGG | + | chr4_2:11839992-11840011 | Msa0589240:intron | 15.0% |
!!! | GTTTAATAGCATTTTTAAAT+TGG | + | chr4_2:11840421-11840440 | Msa0589240:intron | 15.0% |
!!! | AAAATCGATTTATAAGATTA+GGG | + | chr4_2:11840496-11840515 | Msa0589240:intron | 15.0% |
!!! | TAGATCTATTTTTCTTACTT+AGG | + | chr4_2:11838444-11838463 | Msa0589240:intron | 20.0% |
!!! | GCTTATTTCTTAATACTATA+TGG | + | chr4_2:11838783-11838802 | Msa0589240:intron | 20.0% |
!!! | ATTGTTAAGTAGTAACTTTT+TGG | + | chr4_2:11839001-11839020 | Msa0589240:intron | 20.0% |
!! | TTATACTAAAGAATCATGAT+TGG | - | chr4_2:11839051-11839070 | None:intergenic | 20.0% |
!!! | AGTATAATAGCTTGAATTTT+AGG | + | chr4_2:11839064-11839083 | Msa0589240:intron | 20.0% |
!! | TTTATATTGTCCTCTTATTA+TGG | + | chr4_2:11839220-11839239 | Msa0589240:intron | 20.0% |
!! | ATTACTATATCCATAATAAG+AGG | - | chr4_2:11839233-11839252 | None:intergenic | 20.0% |
!! | TTAAATATAATCACATGTGT+CGG | + | chr4_2:11839512-11839531 | Msa0589240:intron | 20.0% |
!!! | TTTTTGTGAATCATAATTAG+GGG | + | chr4_2:11839993-11840012 | Msa0589240:intron | 20.0% |
!!! | TTTTTTTTTCTTCCTCAAAT+AGG | + | chr4_2:11840113-11840132 | Msa0589240:intron | 20.0% |
!!! | ATAGCATTTTTAAATTGGTT+TGG | + | chr4_2:11840426-11840445 | Msa0589240:intron | 20.0% |
!!! | TAGCATTTTTAAATTGGTTT+GGG | + | chr4_2:11840427-11840446 | Msa0589240:intron | 20.0% |
!!! | ATCTTATAAATCGATTTTGT+AGG | - | chr4_2:11840494-11840513 | None:intergenic | 20.0% |
!!! | CAAAATCGATTTATAAGATT+AGG | + | chr4_2:11840495-11840514 | Msa0589240:intron | 20.0% |
!! | TAAAATTATTATTTAAGCCC+TGG | - | chr4_2:11840660-11840679 | None:intergenic | 20.0% |
!! | AACAGAATTAAAATGAAAAC+TGG | - | chr4_2:11840793-11840812 | None:intergenic | 20.0% |
! | AAAATTGAGAAAGGATTGAA+GGG | - | chr4_2:11837988-11838007 | None:intergenic | 25.0% |
! | AAGATTCAAAGAAGAAAAAG+TGG | - | chr4_2:11838111-11838130 | None:intergenic | 25.0% |
! | AAAGAAACATTATGAGCAAT+AGG | - | chr4_2:11838257-11838276 | None:intergenic | 25.0% |
! | TATTGCTCATAATGTTTCTT+TGG | + | chr4_2:11838256-11838275 | Msa0589240:CDS | 25.0% |
!! | AATTTTCAGCCAAGTATTTT+AGG | + | chr4_2:11838501-11838520 | Msa0589240:intron | 25.0% |
! | AGTAACAACCTATGATAATA+GGG | - | chr4_2:11838527-11838546 | None:intergenic | 25.0% |
! | AAGTAACAACCTATGATAAT+AGG | - | chr4_2:11838528-11838547 | None:intergenic | 25.0% |
!! | ATAATAGCTTGAATTTTAGG+AGG | + | chr4_2:11839067-11839086 | Msa0589240:intron | 25.0% |
! | TTATCTTGATGTTATTGTTG+TGG | + | chr4_2:11839106-11839125 | Msa0589240:intron | 25.0% |
! | AATATGATAGATCAAAACAG+AGG | - | chr4_2:11839411-11839430 | None:intergenic | 25.0% |
!!! | CTTTTTTATTTCCCTTCTTT+TGG | + | chr4_2:11839655-11839674 | Msa0589240:intron | 25.0% |
!!! | ATAATTAGGGGTTTTAAGTA+GGG | + | chr4_2:11840005-11840024 | Msa0589240:intron | 25.0% |
!!! | TATAATGGATACTAGTGAAA+AGG | + | chr4_2:11840587-11840606 | Msa0589240:intron | 25.0% |
! | TATTTCTTTCAAAAACCTGT+TGG | - | chr4_2:11840702-11840721 | None:intergenic | 25.0% |
! | ATAATCAACATATGCTTCAT+AGG | + | chr4_2:11840888-11840907 | Msa0589240:intron | 25.0% |
!! | AATTTAGAAGACATTGACTA+AGG | - | chr4_2:11841021-11841040 | None:intergenic | 25.0% |
!! | CTTCTAAATTAATTTTCCAC+AGG | + | chr4_2:11841031-11841050 | Msa0589240:intron | 25.0% |
! | TTCTTCCATGAGTTATAAAT+GGG | - | chr4_2:11841169-11841188 | None:intergenic | 25.0% |
! | ATTCTTCCATGAGTTATAAA+TGG | - | chr4_2:11841170-11841189 | None:intergenic | 25.0% |
!!! | TGTTGATTTAAGTAAACAGA+AGG | + | chr4_2:11841208-11841227 | Msa0589240:CDS | 25.0% |
! | TTCATGAAAGAAAGAAACAA+AGG | - | chr4_2:11841363-11841382 | None:intergenic | 25.0% |
!!! | TTTTTTATGCAGATATAGCA+TGG | + | chr4_2:11841427-11841446 | Msa0589240:intron | 25.0% |
! | GAAGAAATAATGTTGCAAAT+CGG | + | chr4_2:11841649-11841668 | Msa0589240:CDS | 25.0% |
! | ATTAGAGATCTAACGTAATT+TGG | - | chr4_2:11841825-11841844 | None:intergenic | 25.0% |
! | ACAATTTATAGTAGTGCATA+TGG | - | chr4_2:11842097-11842116 | None:intergenic | 25.0% |
! | ACTACTATAAATTGTTGAAG+TGG | + | chr4_2:11842102-11842121 | Msa0589240:CDS | 25.0% |
!!! | GTTGTATTGTTAACTAGTTT+TGG | + | chr4_2:11842551-11842570 | Msa0589240:three_prime_UTR | 25.0% |
! | ATACAGTAACATGAGATTTA+TGG | + | chr4_2:11842606-11842625 | Msa0589240:three_prime_UTR | 25.0% |
GAAAATTGAGAAAGGATTGA+AGG | - | chr4_2:11837989-11838008 | None:intergenic | 30.0% | |
TTCTTCTTTGAATCTTCCTA+TGG | + | chr4_2:11838115-11838134 | Msa0589240:CDS | 30.0% | |
TCTTTCTTGACTTCTTCAAA+CGG | - | chr4_2:11838221-11838240 | None:intergenic | 30.0% | |
ATAATAGGGCCTAAAATACT+TGG | - | chr4_2:11838513-11838532 | None:intergenic | 30.0% | |
! | ATTTTAGGCCCTATTATCAT+AGG | + | chr4_2:11838516-11838535 | Msa0589240:intron | 30.0% |
TAATGATTGTAAATGCAGTG+TGG | + | chr4_2:11838641-11838660 | Msa0589240:intron | 30.0% | |
TACAAGCTGAATCTTATAGA+GGG | - | chr4_2:11838763-11838782 | None:intergenic | 30.0% | |
! | CTTTTGTGAATTTTTGTGTG+TGG | + | chr4_2:11838823-11838842 | Msa0589240:intron | 30.0% |
! | AATTTTTGTGTGTGGATAAC+AGG | + | chr4_2:11838831-11838850 | Msa0589240:intron | 30.0% |
!! | GTAGTAACTTTTTGGTATAG+TGG | + | chr4_2:11839009-11839028 | Msa0589240:intron | 30.0% |
TGGTATAGTGGTAAATAACA+TGG | + | chr4_2:11839021-11839040 | Msa0589240:intron | 30.0% | |
!! | GATTTTAGAGGTCTTTGTAA+CGG | - | chr4_2:11839181-11839200 | None:intergenic | 30.0% |
CGAATATTCTAAGCAAATCA+AGG | - | chr4_2:11839271-11839290 | None:intergenic | 30.0% | |
!! | TGATTTGCTTAGAATATTCG+TGG | + | chr4_2:11839271-11839290 | Msa0589240:intron | 30.0% |
AGAATTTGATCATGCAGAAA+AGG | + | chr4_2:11839333-11839352 | Msa0589240:CDS | 30.0% | |
GAATTTGATCATGCAGAAAA+GGG | + | chr4_2:11839334-11839353 | Msa0589240:CDS | 30.0% | |
GAGTCAGCATAAATAGTTAA+AGG | - | chr4_2:11839632-11839651 | None:intergenic | 30.0% | |
ATTCAAAAACAGAGAGAAAG+AGG | - | chr4_2:11839759-11839778 | None:intergenic | 30.0% | |
! | CAATAAAGTTTTGCATTGCA+AGG | + | chr4_2:11839899-11839918 | Msa0589240:intron | 30.0% |
!! | GGCTCTGAAATCTTAAAATT+CGG | + | chr4_2:11839935-11839954 | Msa0589240:intron | 30.0% |
!! | GCTCTGAAATCTTAAAATTC+GGG | + | chr4_2:11839936-11839955 | Msa0589240:intron | 30.0% |
!!! | CATAATTAGGGGTTTTAAGT+AGG | + | chr4_2:11840004-11840023 | Msa0589240:intron | 30.0% |
TTCTGTTCGACTAATAAACA+AGG | - | chr4_2:11840045-11840064 | None:intergenic | 30.0% | |
TCTCTAACTTTACCTATTTG+AGG | - | chr4_2:11840128-11840147 | None:intergenic | 30.0% | |
TTGAGATAGTACATTACATG+TGG | - | chr4_2:11840314-11840333 | None:intergenic | 30.0% | |
TGCTATTAAACATACACTGT+CGG | - | chr4_2:11840412-11840431 | None:intergenic | 30.0% | |
!! | TTTAAATTGGTTTGGGTTGA+TGG | + | chr4_2:11840434-11840453 | Msa0589240:intron | 30.0% |
!! | TTAAATTGGTTTGGGTTGAT+GGG | + | chr4_2:11840435-11840454 | Msa0589240:intron | 30.0% |
TGATGGGATTTCTTAGAATT+TGG | + | chr4_2:11840451-11840470 | Msa0589240:intron | 30.0% | |
GATGGGATTTCTTAGAATTT+GGG | + | chr4_2:11840452-11840471 | Msa0589240:intron | 30.0% | |
ATGGGATTTCTTAGAATTTG+GGG | + | chr4_2:11840453-11840472 | Msa0589240:intron | 30.0% | |
TCGACAAGGTAATTATAAGA+TGG | + | chr4_2:11840547-11840566 | Msa0589240:intron | 30.0% | |
CAAGGTAATTATAAGATGGA+CGG | + | chr4_2:11840551-11840570 | Msa0589240:intron | 30.0% | |
TTCATTGACAAAGGCAAAAT+GGG | - | chr4_2:11840731-11840750 | None:intergenic | 30.0% | |
TTTCATTGACAAAGGCAAAA+TGG | - | chr4_2:11840732-11840751 | None:intergenic | 30.0% | |
!! | TGAAAGTGTTTCATTGACAA+AGG | - | chr4_2:11840740-11840759 | None:intergenic | 30.0% |
CAATGAAACACTTTCAATCA+TGG | + | chr4_2:11840744-11840763 | Msa0589240:intron | 30.0% | |
TTCCCAAATTGTTAAGACAT+GGG | + | chr4_2:11840815-11840834 | Msa0589240:intron | 30.0% | |
CTAATATTCCTTTGTACCTT+TGG | + | chr4_2:11840922-11840941 | Msa0589240:intron | 30.0% | |
! | AGTTGTACAAGCTATGTTTT+TGG | - | chr4_2:11840949-11840968 | None:intergenic | 30.0% |
TAAACAGAAGGAAAAGAAGA+AGG | + | chr4_2:11841220-11841239 | Msa0589240:CDS | 30.0% | |
AAACAGAAGGAAAAGAAGAA+GGG | + | chr4_2:11841221-11841240 | Msa0589240:CDS | 30.0% | |
! | TCATTTAGCTTCTGGAAAAT+AGG | - | chr4_2:11841398-11841417 | None:intergenic | 30.0% |
TTGAAAATATCCTACCTTGA+GGG | - | chr4_2:11841552-11841571 | None:intergenic | 30.0% | |
TTTGAAAATATCCTACCTTG+AGG | - | chr4_2:11841553-11841572 | None:intergenic | 30.0% | |
ATTGCTTTATACCATGTTTC+AGG | + | chr4_2:11841605-11841624 | Msa0589240:intron | 30.0% | |
! | ACATTATTTCTTCCTTGGTT+AGG | - | chr4_2:11841642-11841661 | None:intergenic | 30.0% |
! | TTGCAACATTATTTCTTCCT+TGG | - | chr4_2:11841647-11841666 | None:intergenic | 30.0% |
AATAATGTTGCAAATCGGTA+CGG | + | chr4_2:11841654-11841673 | Msa0589240:CDS | 30.0% | |
GATAATTATAGATACCCATC+TGG | + | chr4_2:11841762-11841781 | Msa0589240:CDS | 30.0% | |
AGATCTAACGTAATTTGGAT+GGG | - | chr4_2:11841820-11841839 | None:intergenic | 30.0% | |
TTATAAACTGAGTGCTTCAT+AGG | - | chr4_2:11841851-11841870 | None:intergenic | 30.0% | |
!! | ATTATTTTGTTTCATGCTCC+AGG | + | chr4_2:11842229-11842248 | Msa0589240:three_prime_UTR | 30.0% |
AGAATCATTTGTTCAAGCTT+TGG | + | chr4_2:11842357-11842376 | Msa0589240:three_prime_UTR | 30.0% | |
CTGATTACACTACACATAAA+GGG | - | chr4_2:11842440-11842459 | None:intergenic | 30.0% | |
TCTGATTACACTACACATAA+AGG | - | chr4_2:11842441-11842460 | None:intergenic | 30.0% | |
GTCGTTGAGAAAATTGAGAA+AGG | - | chr4_2:11837997-11838016 | None:intergenic | 35.0% | |
TGGTGAAAAGATCGAAACTT+TGG | - | chr4_2:11838057-11838076 | None:intergenic | 35.0% | |
TCTTTGAATCTTCCTATGGA+TGG | + | chr4_2:11838119-11838138 | Msa0589240:CDS | 35.0% | |
AAACAAAGAGTGGTACACAT+AGG | - | chr4_2:11838679-11838698 | None:intergenic | 35.0% | |
CAAAGTATGCAAACAAAGAG+TGG | - | chr4_2:11838689-11838708 | None:intergenic | 35.0% | |
CTACAAGCTGAATCTTATAG+AGG | - | chr4_2:11838764-11838783 | None:intergenic | 35.0% | |
TGTGGATAACAGGTTCTTTA+AGG | + | chr4_2:11838841-11838860 | Msa0589240:intron | 35.0% | |
! | GTTCTTTAAGGAATCTAGTG+AGG | + | chr4_2:11838853-11838872 | Msa0589240:CDS | 35.0% |
ACTCAGGAAGTAAATCATGT+TGG | + | chr4_2:11838925-11838944 | Msa0589240:intron | 35.0% | |
TTTGCTTAGAATATTCGTGG+TGG | + | chr4_2:11839274-11839293 | Msa0589240:intron | 35.0% | |
TCTGCATGATCAAATTCTGA+GGG | - | chr4_2:11839331-11839350 | None:intergenic | 35.0% | |
TTCTGCATGATCAAATTCTG+AGG | - | chr4_2:11839332-11839351 | None:intergenic | 35.0% | |
TCTCGTGATCATTATGCATT+AGG | + | chr4_2:11839535-11839554 | Msa0589240:intron | 35.0% | |
GCTGAATCAAACCAAAAGAA+GGG | - | chr4_2:11839669-11839688 | None:intergenic | 35.0% | |
! | AAAGTTTTGCATTGCAAGGT+CGG | + | chr4_2:11839903-11839922 | Msa0589240:intron | 35.0% |
TATTAGTCGAACAGAAGCTT+TGG | + | chr4_2:11840049-11840068 | Msa0589240:intron | 35.0% | |
GCAGCTGATATTAATGATGA+TGG | + | chr4_2:11840191-11840210 | Msa0589240:CDS | 35.0% | |
TCCCAAATCATATCTCCTTT+GGG | - | chr4_2:11840269-11840288 | None:intergenic | 35.0% | |
TTCCCAAATCATATCTCCTT+TGG | - | chr4_2:11840270-11840289 | None:intergenic | 35.0% | |
TGTACTATCTCAATCTTCCT+TGG | + | chr4_2:11840321-11840340 | Msa0589240:intron | 35.0% | |
! | GTTTTGCTGAATATTGAACG+TGG | + | chr4_2:11840384-11840403 | Msa0589240:intron | 35.0% |
CTAGTATCCATTATAGTCTC+CGG | - | chr4_2:11840582-11840601 | None:intergenic | 35.0% | |
TAAGTTTCTCATTTGCCAAC+AGG | + | chr4_2:11840684-11840703 | Msa0589240:intron | 35.0% | |
CTTCCCAAATTGTTAAGACA+TGG | + | chr4_2:11840814-11840833 | Msa0589240:intron | 35.0% | |
AGCCCATGTCTTAACAATTT+GGG | - | chr4_2:11840820-11840839 | None:intergenic | 35.0% | |
!! | TTTTTGGACCAAAGGTACAA+AGG | - | chr4_2:11840933-11840952 | None:intergenic | 35.0% |
!!! | AAGCTATGTTTTTGGACCAA+AGG | - | chr4_2:11840941-11840960 | None:intergenic | 35.0% |
TTAAGAGCAAAACTGCTCAA+TGG | - | chr4_2:11840990-11841009 | None:intergenic | 35.0% | |
TTGTTGTACCAACACTATCT+GGG | + | chr4_2:11841096-11841115 | Msa0589240:CDS | 35.0% | |
AGATTCATGTTCTTGATGGA+AGG | + | chr4_2:11841120-11841139 | Msa0589240:CDS | 35.0% | |
GATTCATGTTCTTGATGGAA+GGG | + | chr4_2:11841121-11841140 | Msa0589240:CDS | 35.0% | |
ATCAAACGAAGAGGTAACAA+GGG | - | chr4_2:11841252-11841271 | None:intergenic | 35.0% | |
CAAATAACCATCAAACGAAG+AGG | - | chr4_2:11841261-11841280 | None:intergenic | 35.0% | |
GGTTATTTGTACCTCATTGA+TGG | + | chr4_2:11841272-11841291 | Msa0589240:CDS | 35.0% | |
! | TAGCTTCTGGAAAATAGGAT+GGG | - | chr4_2:11841393-11841412 | None:intergenic | 35.0% |
! | TTAGCTTCTGGAAAATAGGA+TGG | - | chr4_2:11841394-11841413 | None:intergenic | 35.0% |
! | TTACTCGTTCATTTAGCTTC+TGG | - | chr4_2:11841406-11841425 | None:intergenic | 35.0% |
TGAAAATATCCTACCTTGAG+GGG | - | chr4_2:11841551-11841570 | None:intergenic | 35.0% | |
TTTATACCATGTTTCAGGCA+TGG | + | chr4_2:11841610-11841629 | Msa0589240:intron | 35.0% | |
TCTATGTAACTCATCCTTCA+AGG | + | chr4_2:11841688-11841707 | Msa0589240:CDS | 35.0% | |
CTATGTAACTCATCCTTCAA+GGG | + | chr4_2:11841689-11841708 | Msa0589240:CDS | 35.0% | |
!!! | GGAAGGAAAGAGTTTTTTTG+TGG | + | chr4_2:11841725-11841744 | Msa0589240:CDS | 35.0% |
GAGATCTAACGTAATTTGGA+TGG | - | chr4_2:11841821-11841840 | None:intergenic | 35.0% | |
GATGATTTCACAGCATGAAA+AGG | - | chr4_2:11841887-11841906 | None:intergenic | 35.0% | |
ATGTTTACCAGGCTGATAAT+AGG | - | chr4_2:11841970-11841989 | None:intergenic | 35.0% | |
AGCTTAATTCGATGTTTACC+AGG | - | chr4_2:11841981-11842000 | None:intergenic | 35.0% | |
TTCTTGTTCTTCCAATGCTT+GGG | + | chr4_2:11842126-11842145 | Msa0589240:CDS | 35.0% | |
TTCCTTGAAAATGATGGCAA+TGG | - | chr4_2:11842194-11842213 | None:intergenic | 35.0% | |
TCGTTGTTCCTTGAAAATGA+TGG | - | chr4_2:11842200-11842219 | None:intergenic | 35.0% | |
ACATCAAATTGAGTTATCCC+TGG | + | chr4_2:11842288-11842307 | Msa0589240:three_prime_UTR | 35.0% | |
CATCAAATTGAGTTATCCCT+GGG | + | chr4_2:11842289-11842308 | Msa0589240:three_prime_UTR | 35.0% | |
! | ATTTGTTCAAGCTTTGGTTC+AGG | + | chr4_2:11842363-11842382 | Msa0589240:three_prime_UTR | 35.0% |
! | TTTGTTCAAGCTTTGGTTCA+GGG | + | chr4_2:11842364-11842383 | Msa0589240:three_prime_UTR | 35.0% |
AGTGAATGAGATCCTGATAT+TGG | + | chr4_2:11842407-11842426 | Msa0589240:three_prime_UTR | 35.0% | |
AAGGGCAAAATTCCAATATC+AGG | - | chr4_2:11842422-11842441 | None:intergenic | 35.0% | |
! | TGTAGAACTGAACGTGTTTT+TGG | + | chr4_2:11842469-11842488 | Msa0589240:three_prime_UTR | 35.0% |
TTGGTTTCAACTTTACGATG+TGG | + | chr4_2:11842570-11842589 | Msa0589240:three_prime_UTR | 35.0% | |
AGAGAGATGGTTAACAATGG+CGG | - | chr4_2:11837964-11837983 | None:intergenic | 40.0% | |
GGAAGAGAGATGGTTAACAA+TGG | - | chr4_2:11837967-11837986 | None:intergenic | 40.0% | |
! | TTTTCACCATCACCTATCGT+GGG | + | chr4_2:11838068-11838087 | Msa0589240:CDS | 40.0% |
TTTGAGAAATGACCCACGAT+AGG | - | chr4_2:11838083-11838102 | None:intergenic | 40.0% | |
TTCCTATGGATGGTGATAAG+AGG | + | chr4_2:11838129-11838148 | Msa0589240:CDS | 40.0% | |
TTCCTCTTATCACCATCCAT+AGG | - | chr4_2:11838134-11838153 | None:intergenic | 40.0% | |
TGATAAGAGGAAGAACGTGA+AGG | + | chr4_2:11838142-11838161 | Msa0589240:CDS | 40.0% | |
ATAACACCAGTTAATGCCGT+TGG | - | chr4_2:11838191-11838210 | None:intergenic | 40.0% | |
GGTTTCGTATCATCCTTACT+TGG | - | chr4_2:11838742-11838761 | None:intergenic | 40.0% | |
TGAGAAGCTCATGAAATACC+AGG | + | chr4_2:11838892-11838911 | Msa0589240:CDS | 40.0% | |
AAGCTCATGAAATACCAGGT+TGG | + | chr4_2:11838896-11838915 | Msa0589240:intron | 40.0% | |
!! | ACCAGGTTGGTATTTAACTC+AGG | + | chr4_2:11838909-11838928 | Msa0589240:intron | 40.0% |
TCCTGAGTTAAATACCAACC+TGG | - | chr4_2:11838913-11838932 | None:intergenic | 40.0% | |
! | CATGATCAAATTCTGAGGGA+GGG | - | chr4_2:11839327-11839346 | None:intergenic | 40.0% |
GAAAAGGGAGATGCATTGTA+TGG | + | chr4_2:11839349-11839368 | Msa0589240:CDS | 40.0% | |
CTGCAGATCGAAAACATGTT+TGG | - | chr4_2:11839563-11839582 | None:intergenic | 40.0% | |
GGCTGAATCAAACCAAAAGA+AGG | - | chr4_2:11839670-11839689 | None:intergenic | 40.0% | |
!!! | CTTTTGGTTTGATTCAGCCA+TGG | + | chr4_2:11839671-11839690 | Msa0589240:intron | 40.0% |
GTTTGATTCAGCCATGGAAT+TGG | + | chr4_2:11839677-11839696 | Msa0589240:intron | 40.0% | |
!!! | TTGCAAGGTCGGACATTTTT+TGG | + | chr4_2:11839914-11839933 | Msa0589240:intron | 40.0% |
AGAGAAGTTCCCTCTTGAAA+TGG | + | chr4_2:11840145-11840164 | Msa0589240:CDS | 40.0% | |
AACAACACCTGCTTGAATCT+CGG | - | chr4_2:11840171-11840190 | None:intergenic | 40.0% | |
CCATGCAACAACATTTCCAT+GGG | - | chr4_2:11840243-11840262 | None:intergenic | 40.0% | |
TCCATGCAACAACATTTCCA+TGG | - | chr4_2:11840244-11840263 | None:intergenic | 40.0% | |
CCAAATCATATCTCCTTTGG+GGG | - | chr4_2:11840267-11840286 | None:intergenic | 40.0% | |
CCCAAATCATATCTCCTTTG+GGG | - | chr4_2:11840268-11840287 | None:intergenic | 40.0% | |
CCCCAAAGGAGATATGATTT+GGG | + | chr4_2:11840265-11840284 | Msa0589240:CDS | 40.0% | |
GGATTTCTTAGAATTTGGGG+TGG | + | chr4_2:11840456-11840475 | Msa0589240:intron | 40.0% | |
! | ATGCCATTTCACATCCAAAG+TGG | + | chr4_2:11840519-11840538 | Msa0589240:intron | 40.0% |
AAGAGTAATGAAAGCAAGCC+AGG | + | chr4_2:11840639-11840658 | Msa0589240:intron | 40.0% | |
AGAGTAATGAAAGCAAGCCA+GGG | + | chr4_2:11840640-11840659 | Msa0589240:intron | 40.0% | |
AATGAAAACTGGCAGCTCAA+AGG | - | chr4_2:11840782-11840801 | None:intergenic | 40.0% | |
GAGCCCATGTCTTAACAATT+TGG | - | chr4_2:11840821-11840840 | None:intergenic | 40.0% | |
! | CCAACTATTGGTGATATCGA+CGG | + | chr4_2:11841056-11841075 | Msa0589240:CDS | 40.0% |
! | CAACTATTGGTGATATCGAC+GGG | + | chr4_2:11841057-11841076 | Msa0589240:CDS | 40.0% |
! | AACTATTGGTGATATCGACG+GGG | + | chr4_2:11841058-11841077 | Msa0589240:CDS | 40.0% |
TTGGTACAACAAGCTCAGTA+CGG | - | chr4_2:11841088-11841107 | None:intergenic | 40.0% | |
! | CTTGTTGTACCAACACTATC+TGG | + | chr4_2:11841095-11841114 | Msa0589240:CDS | 40.0% |
TGAATCTTCCCAGATAGTGT+TGG | - | chr4_2:11841107-11841126 | None:intergenic | 40.0% | |
GGGAAGATTCATGTTCTTGA+TGG | + | chr4_2:11841116-11841135 | Msa0589240:CDS | 40.0% | |
! | ATAAATGGGTACCGTCCAAT+AGG | - | chr4_2:11841155-11841174 | None:intergenic | 40.0% |
CGGTACCCATTTATAACTCA+TGG | + | chr4_2:11841161-11841180 | Msa0589240:CDS | 40.0% | |
CATCAAACGAAGAGGTAACA+AGG | - | chr4_2:11841253-11841272 | None:intergenic | 40.0% | |
CTTGTTACCTCTTCGTTTGA+TGG | + | chr4_2:11841251-11841270 | Msa0589240:CDS | 40.0% | |
! | TGTGCTGATGTTGTTGACAT+TGG | + | chr4_2:11841305-11841324 | Msa0589240:CDS | 40.0% |
ATGCAGATATAGCATGGTCT+TGG | + | chr4_2:11841433-11841452 | Msa0589240:intron | 40.0% | |
CTGATTGTCTCGACAATGAA+TGG | + | chr4_2:11841488-11841507 | Msa0589240:CDS | 40.0% | |
AACTCTTTCCTTCCTCATCA+CGG | - | chr4_2:11841719-11841738 | None:intergenic | 40.0% | |
GAACTTACAGTGACATGGTA+TGG | - | chr4_2:11841798-11841817 | None:intergenic | 40.0% | |
! | GCTTTATTGTTCTCTCTCCT+TGG | - | chr4_2:11841938-11841957 | None:intergenic | 40.0% |
GTCGAGATGGTTGACAAAAA+TGG | + | chr4_2:11842038-11842057 | Msa0589240:CDS | 40.0% | |
CTTCTTGTTCTTCCAATGCT+TGG | + | chr4_2:11842125-11842144 | Msa0589240:CDS | 40.0% | |
AAAATGATGGCAATGGCACT+GGG | - | chr4_2:11842187-11842206 | None:intergenic | 40.0% | |
! | TGCCATTGCCATCATTTTCA+AGG | + | chr4_2:11842189-11842208 | Msa0589240:CDS | 40.0% |
TTCACATTTCCTGAGCTCAA+TGG | - | chr4_2:11842259-11842278 | None:intergenic | 40.0% | |
CTTTGATCACGTAGTCAAAG+TGG | + | chr4_2:11842324-11842343 | Msa0589240:three_prime_UTR | 40.0% | |
! | TTTGGTTCAGGGATAGTTGA+GGG | + | chr4_2:11842375-11842394 | Msa0589240:three_prime_UTR | 40.0% |
AGGATTGAAGGGAAGAGAGA+TGG | - | chr4_2:11837977-11837996 | None:intergenic | 45.0% | |
! | CTTTTCACCATCACCTATCG+TGG | + | chr4_2:11838067-11838086 | Msa0589240:CDS | 45.0% |
AAATGACCCACGATAGGTGA+TGG | - | chr4_2:11838077-11838096 | None:intergenic | 45.0% | |
AATGCACCAACGGCATTAAC+TGG | + | chr4_2:11838182-11838201 | Msa0589240:CDS | 45.0% | |
AGAGACAACGTTGCTCTCAA+GGG | + | chr4_2:11838711-11838730 | Msa0589240:CDS | 45.0% | |
! | GAATATTCGTGGTGGAAGAG+TGG | + | chr4_2:11839282-11839301 | Msa0589240:intron | 45.0% |
! | GCATGATCAAATTCTGAGGG+AGG | - | chr4_2:11839328-11839347 | None:intergenic | 45.0% |
CAAAGACAGAGCCAATTCCA+TGG | - | chr4_2:11839691-11839710 | None:intergenic | 45.0% | |
!! | CATGGAATTGGCTCTGTCTT+TGG | + | chr4_2:11839689-11839708 | Msa0589240:intron | 45.0% |
GAATCTCGGCCATTTCAAGA+GGG | - | chr4_2:11840157-11840176 | None:intergenic | 45.0% | |
TGAATCTCGGCCATTTCAAG+AGG | - | chr4_2:11840158-11840177 | None:intergenic | 45.0% | |
CTAGTTACTGCTGATACCCA+TGG | + | chr4_2:11840224-11840243 | Msa0589240:CDS | 45.0% | |
CCCATGGAAATGTTGTTGCA+TGG | + | chr4_2:11840240-11840259 | Msa0589240:CDS | 45.0% | |
CCCCCAAAGGAGATATGATT+TGG | + | chr4_2:11840264-11840283 | Msa0589240:CDS | 45.0% | |
CTACACTCATTGACATGCCA+AGG | - | chr4_2:11840341-11840360 | None:intergenic | 45.0% | |
GCACCACTTTGGATGTGAAA+TGG | - | chr4_2:11840525-11840544 | None:intergenic | 45.0% | |
TATAAGATGGACGGAGAAGC+CGG | + | chr4_2:11840560-11840579 | Msa0589240:intron | 45.0% | |
!! | ATGGGCTCTTCTGTTTCTGA+TGG | + | chr4_2:11840833-11840852 | Msa0589240:intron | 45.0% |
TTTCCACAGGCTCCAACTAT+TGG | + | chr4_2:11841044-11841063 | Msa0589240:intron | 45.0% | |
CCGTCGATATCACCAATAGT+TGG | - | chr4_2:11841059-11841078 | None:intergenic | 45.0% | |
CATGTTCTTGATGGAAGGGA+TGG | + | chr4_2:11841125-11841144 | Msa0589240:CDS | 45.0% | |
! | TACCTCATTGATGGACCTAC+AGG | + | chr4_2:11841281-11841300 | Msa0589240:CDS | 45.0% |
GTCTTGGCAGACAATGTAGA+TGG | + | chr4_2:11841449-11841468 | Msa0589240:CDS | 45.0% | |
TTGGCAGACAATGTAGATGG+TGG | + | chr4_2:11841452-11841471 | Msa0589240:CDS | 45.0% | |
TGGCAGACAATGTAGATGGT+GGG | + | chr4_2:11841453-11841472 | Msa0589240:CDS | 45.0% | |
AATATCCTACCTTGAGGGGA+TGG | - | chr4_2:11841547-11841566 | None:intergenic | 45.0% | |
CAATCTCCATGCCTGAAACA+TGG | - | chr4_2:11841619-11841638 | None:intergenic | 45.0% | |
AGATACCCATCTGGTCATCA+AGG | + | chr4_2:11841771-11841790 | Msa0589240:CDS | 45.0% | |
! | ATGGTCCTTGATGACCAGAT+GGG | - | chr4_2:11841779-11841798 | None:intergenic | 45.0% |
! | TATGGTCCTTGATGACCAGA+TGG | - | chr4_2:11841780-11841799 | None:intergenic | 45.0% |
GATGGGAACTTACAGTGACA+TGG | - | chr4_2:11841803-11841822 | None:intergenic | 45.0% | |
! | TCTCTCCTTGGTAATTGCCA+GGG | - | chr4_2:11841926-11841945 | None:intergenic | 45.0% |
AACCAGACCTATTATCAGCC+TGG | + | chr4_2:11841960-11841979 | Msa0589240:CDS | 45.0% | |
TACCAGGCTGATAATAGGTC+TGG | - | chr4_2:11841965-11841984 | None:intergenic | 45.0% | |
TCGAATTAAGCTGCCAACTG+TGG | + | chr4_2:11841989-11842008 | Msa0589240:CDS | 45.0% | |
CGAATTAAGCTGCCAACTGT+GGG | + | chr4_2:11841990-11842009 | Msa0589240:CDS | 45.0% | |
! | AAGGACCACAGGAACAGTTT+TGG | + | chr4_2:11842016-11842035 | Msa0589240:CDS | 45.0% |
!! | AGGAACAGTTTTGGTCGAGA+TGG | + | chr4_2:11842025-11842044 | Msa0589240:CDS | 45.0% |
CTTCCAATGCTTGGGATGTT+TGG | + | chr4_2:11842134-11842153 | Msa0589240:CDS | 45.0% | |
ACACCAAACATCCCAAGCAT+TGG | - | chr4_2:11842140-11842159 | None:intergenic | 45.0% | |
GAAAATGATGGCAATGGCAC+TGG | - | chr4_2:11842188-11842207 | None:intergenic | 45.0% | |
TACGTGATCAAAGCTCACTG+CGG | - | chr4_2:11842317-11842336 | None:intergenic | 45.0% | |
! | CTTTGGTTCAGGGATAGTTG+AGG | + | chr4_2:11842374-11842393 | Msa0589240:three_prime_UTR | 45.0% |
!! | ACAATGGCGGCTTTGTTGTG+TGG | - | chr4_2:11837951-11837970 | None:intergenic | 50.0% |
TGCTGCTGCAAATGCACCAA+CGG | + | chr4_2:11838172-11838191 | Msa0589240:CDS | 50.0% | |
CAGAGACAACGTTGCTCTCA+AGG | + | chr4_2:11838710-11838729 | Msa0589240:CDS | 50.0% | |
CTCAAGGGACTTGCCAAGTA+AGG | + | chr4_2:11838726-11838745 | Msa0589240:intron | 50.0% | |
GAAATGGCCGAGATTCAAGC+AGG | + | chr4_2:11840161-11840180 | Msa0589240:CDS | 50.0% | |
GGAGAAGCCGGAGACTATAA+TGG | + | chr4_2:11840572-11840591 | Msa0589240:intron | 50.0% | |
TCACCAATAGTTGGAGCCTG+TGG | - | chr4_2:11841050-11841069 | None:intergenic | 50.0% | |
! | ATTGGTGATATCGACGGGGA+TGG | + | chr4_2:11841062-11841081 | Msa0589240:CDS | 50.0% |
GGAAGGGATGGATCACCTAT+TGG | + | chr4_2:11841137-11841156 | Msa0589240:CDS | 50.0% | |
GGGATGGATCACCTATTGGA+CGG | + | chr4_2:11841141-11841160 | Msa0589240:CDS | 50.0% | |
AGCCTGTAGGTCCATCAATG+AGG | - | chr4_2:11841286-11841305 | None:intergenic | 50.0% | |
ACAACATCAGCACAGCCTGT+AGG | - | chr4_2:11841299-11841318 | None:intergenic | 50.0% | |
GGCAGACAATGTAGATGGTG+GGG | + | chr4_2:11841454-11841473 | Msa0589240:CDS | 50.0% | |
GCATGGAGATTGCCTAACCA+AGG | + | chr4_2:11841627-11841646 | Msa0589240:CDS | 50.0% | |
TCATCACGGAAAGCCCTTGA+AGG | - | chr4_2:11841705-11841724 | None:intergenic | 50.0% | |
TTCAAGGGCTTTCCGTGATG+AGG | + | chr4_2:11841704-11841723 | Msa0589240:CDS | 50.0% | |
GTAATTGCCAGGGACAAGCA+AGG | - | chr4_2:11841916-11841935 | None:intergenic | 50.0% | |
CTTGTCCCTGGCAATTACCA+AGG | + | chr4_2:11841918-11841937 | Msa0589240:CDS | 50.0% | |
! | CTCTCTCCTTGGTAATTGCC+AGG | - | chr4_2:11841927-11841946 | None:intergenic | 50.0% |
CTCGACCAAAACTGTTCCTG+TGG | - | chr4_2:11842024-11842043 | None:intergenic | 50.0% | |
CTGAGGGAGGGCTCACAATA+GGG | - | chr4_2:11839315-11839334 | None:intergenic | 55.0% | |
TCTGAGGGAGGGCTCACAAT+AGG | - | chr4_2:11839316-11839335 | None:intergenic | 55.0% | |
GTTGTTGCATGGACCCCCAA+AGG | + | chr4_2:11840251-11840270 | Msa0589240:CDS | 55.0% | |
!! | CCTTGTCGAGAGCACCACTT+TGG | - | chr4_2:11840536-11840555 | None:intergenic | 55.0% |
CCAAAGTGGTGCTCTCGACA+AGG | + | chr4_2:11840533-11840552 | Msa0589240:intron | 55.0% | |
TTGAGGGGATGGTGAGGTGA+GGG | - | chr4_2:11841536-11841555 | None:intergenic | 55.0% | |
GCAAATCGGTACGGTCGTGA+AGG | + | chr4_2:11841663-11841682 | Msa0589240:CDS | 55.0% | |
AGGGCTTTCCGTGATGAGGA+AGG | + | chr4_2:11841708-11841727 | Msa0589240:CDS | 55.0% | |
CAGACTTCCTTGCTTGTCCC+TGG | + | chr4_2:11841906-11841925 | Msa0589240:intron | 55.0% | |
AGCTGCCAACTGTGGGAGTA+AGG | + | chr4_2:11841997-11842016 | Msa0589240:CDS | 55.0% | |
GTGGTCCTTACTCCCACAGT+TGG | - | chr4_2:11842005-11842024 | None:intergenic | 55.0% | |
ACTGTGGGAGTAAGGACCAC+AGG | + | chr4_2:11842005-11842024 | Msa0589240:CDS | 55.0% | |
CTTGTCATCCTTCGCCCACA+AGG | + | chr4_2:11842161-11842180 | Msa0589240:CDS | 55.0% | |
CTTGAGGGGATGGTGAGGTG+AGG | - | chr4_2:11841537-11841556 | None:intergenic | 60.0% | |
CTCACCTCACCATCCCCTCA+AGG | + | chr4_2:11841535-11841554 | Msa0589240:CDS | 60.0% | |
CCTACCTTGAGGGGATGGTG+AGG | - | chr4_2:11841542-11841561 | None:intergenic | 60.0% | |
CCTCACCATCCCCTCAAGGT+AGG | + | chr4_2:11841539-11841558 | Msa0589240:intron | 60.0% | |
! | GCAATGGCACTGGGCCTTGT+GGG | - | chr4_2:11842178-11842197 | None:intergenic | 60.0% |
CCTGAGCTCAATGGTGTGCC+TGG | - | chr4_2:11842250-11842269 | None:intergenic | 60.0% | |
CCAGGCACACCATTGAGCTC+AGG | + | chr4_2:11842247-11842266 | Msa0589240:three_prime_UTR | 60.0% | |
AAAGCTCACTGCGGCACCCA+GGG | - | chr4_2:11842308-11842327 | None:intergenic | 60.0% | |
! | GGCAATGGCACTGGGCCTTG+TGG | - | chr4_2:11842179-11842198 | None:intergenic | 65.0% |
CAAAGCTCACTGCGGCACCC+AGG | - | chr4_2:11842309-11842328 | None:intergenic | 65.0% | |
! | GCACTGGGCCTTGTGGGCGA+AGG | - | chr4_2:11842172-11842191 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 11837944 | 11842717 | 11837944 | ID=Msa0589240;Name=Msa0589240 |
chr4_2 | mRNA | 11837944 | 11842717 | 11837944 | ID=Msa0589240-mRNA-1;Parent=Msa0589240;Name=Msa0589240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=94|0.87|0.88|1|1|1|9|494|535 |
chr4_2 | exon | 11837944 | 11838330 | 11837944 | ID=Msa0589240-mRNA-1:exon:3479;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11838659 | 11838742 | 11838659 | ID=Msa0589240-mRNA-1:exon:3480;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11838853 | 11838913 | 11838853 | ID=Msa0589240-mRNA-1:exon:3481;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11839283 | 11839370 | 11839283 | ID=Msa0589240-mRNA-1:exon:3482;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11840135 | 11840316 | 11840135 | ID=Msa0589240-mRNA-1:exon:3483;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11841053 | 11841336 | 11841053 | ID=Msa0589240-mRNA-1:exon:3484;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11841439 | 11841556 | 11841439 | ID=Msa0589240-mRNA-1:exon:3485;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11841627 | 11841809 | 11841627 | ID=Msa0589240-mRNA-1:exon:3486;Parent=Msa0589240-mRNA-1 |
chr4_2 | exon | 11841909 | 11842717 | 11841909 | ID=Msa0589240-mRNA-1:exon:3487;Parent=Msa0589240-mRNA-1 |
chr4_2 | five_prime_UTR | 11837944 | 11838037 | 11837944 | ID=Msa0589240-mRNA-1:five_prime_utr;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11838038 | 11838330 | 11838038 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11838659 | 11838742 | 11838659 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11838853 | 11838913 | 11838853 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11839283 | 11839370 | 11839283 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11840135 | 11840316 | 11840135 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11841053 | 11841336 | 11841053 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11841439 | 11841556 | 11841439 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11841627 | 11841809 | 11841627 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | CDS | 11841909 | 11842223 | 11841909 | ID=Msa0589240-mRNA-1:cds;Parent=Msa0589240-mRNA-1 |
chr4_2 | three_prime_UTR | 11842224 | 11842717 | 11842224 | ID=Msa0589240-mRNA-1:three_prime_utr;Parent=Msa0589240-mRNA-1 |
Gene Sequence |
Protein sequence |