Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667040 | CAA65771.1 | 92.000 | 250 | 2 | 1 | 1 | 232 | 1 | 250 | 4.24e-162 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667040 | sp|O65100|FRI3_VIGUN | 71.765 | 255 | 49 | 2 | 1 | 232 | 1 | 255 | 1.37e-120 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667040 | Q9ZP90 | 92.000 | 250 | 2 | 1 | 1 | 232 | 1 | 250 | 2.03e-162 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629250 | Msa0667040 | 0.891271 | 4.625451e-74 | -8.615850e-47 |
| Msa0532240 | Msa0667040 | 0.910643 | 1.489363e-82 | -8.615850e-47 |
| Msa0589190 | Msa0667040 | 0.821695 | 3.520643e-53 | -8.615850e-47 |
| Msa0589240 | Msa0667040 | 0.832264 | 1.043728e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667040 | MtrunA17_Chr4g0005581 | 91.600 | 250 | 3 | 1 | 1 | 232 | 1 | 250 | 3.54e-165 | 456 |
| Msa0667040 | MtrunA17_Chr7g0243241 | 69.565 | 253 | 54 | 3 | 1 | 232 | 1 | 251 | 1.14e-113 | 325 |
| Msa0667040 | MtrunA17_Chr5g0437531 | 64.516 | 217 | 58 | 2 | 35 | 232 | 28 | 244 | 2.50e-88 | 261 |
| Msa0667040 | MtrunA17_Chr5g0431291 | 70.161 | 124 | 33 | 1 | 108 | 231 | 11 | 130 | 5.06e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667040 | AT5G01600.1 | 61.382 | 246 | 65 | 3 | 11 | 232 | 16 | 255 | 3.06e-97 | 284 |
| Msa0667040 | AT2G40300.1 | 63.839 | 224 | 61 | 2 | 28 | 231 | 34 | 257 | 6.82e-93 | 273 |
| Msa0667040 | AT3G56090.1 | 69.588 | 194 | 41 | 1 | 56 | 231 | 62 | 255 | 5.17e-88 | 261 |
| Msa0667040 | AT3G11050.1 | 62.500 | 208 | 60 | 1 | 43 | 232 | 43 | 250 | 6.74e-84 | 250 |
Find 79 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCTCATAATGTTTCTT+TGG | 0.198410 | 4_4:+7274076 | Msa0667040:CDS |
| TGTGGATAACAGGTTCTTTA+AGG | 0.220356 | 4_4:+7274695 | Msa0667040:intron |
| GTCAAACTTTGTTAGCTTCC+TGG | 0.267071 | 4_4:+7276848 | Msa0667040:three_prime_UTR |
| AGCTATCATTGGTGTTTATT+AGG | 0.275021 | 4_4:+7276744 | Msa0667040:three_prime_UTR |
| CATGGAATTGGCTCTGTCTT+TGG | 0.276046 | 4_4:+7275550 | Msa0667040:CDS |
| ATTAAAGAAGAATAACAAAA+AGG | 0.290976 | 4_4:-7273837 | None:intergenic |
| TTTAGTTGCTTAGTAAGAAT+TGG | 0.313263 | 4_4:+7276608 | Msa0667040:three_prime_UTR |
| TTCCTGCTACCTTGCCTGTT+TGG | 0.330205 | 4_4:+7276872 | Msa0667040:three_prime_UTR |
| CAAGCTACAAACAGTTATTA+TGG | 0.335464 | 4_4:-7276633 | None:intergenic |
| AATGCACCAACGGCATTAAC+TGG | 0.362157 | 4_4:+7274002 | Msa0667040:CDS |
| GTTTGATTCAGCCATGGAAT+TGG | 0.370462 | 4_4:+7275538 | Msa0667040:intron |
| AAAGAAACATTATGAGCAAT+AGG | 0.377860 | 4_4:-7274074 | None:intergenic |
| TTTGTTCATAATAAACTCTC+TGG | 0.379718 | 4_4:+7276984 | Msa0667040:three_prime_UTR |
| AGAATTTGATCATGCAGAAA+AGG | 0.391733 | 4_4:+7275193 | Msa0667040:CDS |
| TCTGAGGGAGGGCTCACAAT+AGG | 0.396058 | 4_4:-7275173 | None:intergenic |
| TTCTTCTTTGAATCTTCCTA+TGG | 0.409275 | 4_4:+7273935 | Msa0667040:CDS |
| AGACCCGTGAGCTTGAGTTT+TGG | 0.418442 | 4_4:+7276826 | Msa0667040:three_prime_UTR |
| CACGGGTCTAAGCATGTGTT+TGG | 0.419791 | 4_4:-7276812 | None:intergenic |
| CTGAGGGAGGGCTCACAATA+GGG | 0.446437 | 4_4:-7275172 | None:intergenic |
| TAGTTTCACTGAGGAATGTT+TGG | 0.452988 | 4_4:+7276706 | Msa0667040:three_prime_UTR |
| GAAAATTGAGAAAGGATTGA+AGG | 0.454323 | 4_4:-7273806 | None:intergenic |
| AATAAATGCACAGCTATCAT+TGG | 0.465507 | 4_4:+7276733 | Msa0667040:three_prime_UTR |
| TCTTTGAATCTTCCTATGGA+TGG | 0.467506 | 4_4:+7273939 | Msa0667040:CDS |
| AGGCAAGGTAGCAGGAAGCC+AGG | 0.470219 | 4_4:-7276866 | None:intergenic |
| GTCGTTGAGAAAATTGAGAA+AGG | 0.472968 | 4_4:-7273814 | None:intergenic |
| GTGACTCAACTGAGATTAGT+TGG | 0.480672 | 4_4:+7276320 | Msa0667040:CDS |
| TGATTTGCTTAGAATATTCG+TGG | 0.482145 | 4_4:+7275131 | Msa0667040:intron |
| TCAAATGTAACAATCCAAAC+AGG | 0.482394 | 4_4:-7276886 | None:intergenic |
| GTGAAGAGGGTGAGGGACAA+AGG | 0.485559 | 4_4:-7273746 | None:intergenic |
| CAGAGACAACGTTGCTCTCA+AGG | 0.486549 | 4_4:+7274565 | Msa0667040:intron |
| TAAATGAAATGTATTCTCCT+AGG | 0.493512 | 4_4:+7276554 | Msa0667040:three_prime_UTR |
| ATCCAAACAGGCAAGGTAGC+AGG | 0.495607 | 4_4:-7276874 | None:intergenic |
| CATAATAAACTCTCTGGGAT+AGG | 0.498823 | 4_4:+7276990 | Msa0667040:three_prime_UTR |
| AAAATTGAGAAAGGATTGAA+GGG | 0.503267 | 4_4:-7273805 | None:intergenic |
| AGGATTGAAGGGAAGAGAGA+TGG | 0.503549 | 4_4:-7273794 | None:intergenic |
| TTCCTATGGATGGTGATAAG+AGG | 0.508563 | 4_4:+7273949 | Msa0667040:CDS |
| TCATACATCATCTTAATCAA+TGG | 0.509628 | 4_4:-7276486 | None:intergenic |
| TCGATGAAATCTGCCAATTG+AGG | 0.510833 | 4_4:-7275766 | None:intergenic |
| TGGTGAAAAGATCGAAACTT+TGG | 0.511973 | 4_4:-7273874 | None:intergenic |
| GTGTGGTTGTGAAGAGGGTG+AGG | 0.513478 | 4_4:-7273754 | None:intergenic |
| TCTTTCTTGACTTCTTCAAA+CGG | 0.514880 | 4_4:-7274038 | None:intergenic |
| TCGTAACAATGATCCTCAAT+TGG | 0.517803 | 4_4:+7275753 | Msa0667040:CDS |
| GAATTTGATCATGCAGAAAA+GGG | 0.523661 | 4_4:+7275194 | Msa0667040:CDS |
| TCTGGGATAGGTTATGAAAA+CGG | 0.526003 | 4_4:+7277002 | Msa0667040:three_prime_UTR |
| CAACTGAGATTAGTTGGAAA+GGG | 0.526186 | 4_4:+7276326 | Msa0667040:CDS |
| TTGTTCATAATAAACTCTCT+GGG | 0.534044 | 4_4:+7276985 | Msa0667040:three_prime_UTR |
| GTTAGAAATGAAAATGACGT+TGG | 0.536417 | 4_4:+7276669 | Msa0667040:three_prime_UTR |
| GCGTAAGTTCAAACAAATTG+TGG | 0.541977 | 4_4:+7276766 | Msa0667040:three_prime_UTR |
| TTCTGCATGATCAAATTCTG+AGG | 0.542218 | 4_4:-7275189 | None:intergenic |
| TTTCACTGAGGAATGTTTGG+TGG | 0.544282 | 4_4:+7276709 | Msa0667040:three_prime_UTR |
| TCTGCATGATCAAATTCTGA+GGG | 0.551161 | 4_4:-7275188 | None:intergenic |
| GCTTTGTGTGGTTGTGAAGA+GGG | 0.551807 | 4_4:-7273759 | None:intergenic |
| TCAACTGAGATTAGTTGGAA+AGG | 0.563711 | 4_4:+7276325 | Msa0667040:CDS |
| GGCTTTGTGTGGTTGTGAAG+AGG | 0.566471 | 4_4:-7273760 | None:intergenic |
| TTTGAGAAATGACCCACGAT+AGG | 0.571890 | 4_4:-7273900 | None:intergenic |
| TGACCAAAACTCAAGCTCAC+GGG | 0.586818 | 4_4:-7276829 | None:intergenic |
| CAAAGACAGAGCCAATTCCA+TGG | 0.587636 | 4_4:-7275549 | None:intergenic |
| GAAAAGGGAGATGCATTGTA+TGG | 0.589420 | 4_4:+7275209 | Msa0667040:CDS |
| TGCTGCTGCAAATGCACCAA+CGG | 0.590613 | 4_4:+7273992 | Msa0667040:CDS |
| TTGACCAAAACTCAAGCTCA+CGG | 0.593074 | 4_4:-7276830 | None:intergenic |
| AGAGACAACGTTGCTCTCAA+GGG | 0.594095 | 4_4:+7274566 | Msa0667040:intron |
| TTCCTCTTATCACCATCCAT+AGG | 0.596094 | 4_4:-7273951 | None:intergenic |
| CATGATCAAATTCTGAGGGA+GGG | 0.603900 | 4_4:-7275184 | None:intergenic |
| GCATGATCAAATTCTGAGGG+AGG | 0.609988 | 4_4:-7275185 | None:intergenic |
| AGATTAGTTGGAAAGGGTCA+CGG | 0.615348 | 4_4:+7276332 | Msa0667040:CDS |
| TTAACAATGGCGGCTTTGTG+TGG | 0.615407 | 4_4:-7273771 | None:intergenic |
| GAATATTCGTGGTGGAAGAG+TGG | 0.615684 | 4_4:+7275142 | Msa0667040:intron |
| GTTCTTTAAGGAATCTAGTG+AGG | 0.615734 | 4_4:+7274707 | Msa0667040:CDS |
| ATAACACCAGTTAATGCCGT+TGG | 0.628331 | 4_4:-7274008 | None:intergenic |
| TGTAACAATCCAAACAGGCA+AGG | 0.631341 | 4_4:-7276881 | None:intergenic |
| TGTGGTTGTGAAGAGGGTGA+GGG | 0.643337 | 4_4:-7273753 | None:intergenic |
| TGAGAAGCTCATGAAATACC+AGG | 0.648725 | 4_4:+7274746 | Msa0667040:CDS |
| AGAGAGATGGTTAACAATGG+CGG | 0.662971 | 4_4:-7273781 | None:intergenic |
| TTCTACGTCTAAAATTACCT+AGG | 0.671541 | 4_4:-7276571 | None:intergenic |
| AAATGACCCACGATAGGTGA+TGG | 0.680438 | 4_4:-7273894 | None:intergenic |
| TGATAAGAGGAAGAACGTGA+AGG | 0.682141 | 4_4:+7273962 | Msa0667040:CDS |
| GGAAGAGAGATGGTTAACAA+TGG | 0.682755 | 4_4:-7273784 | None:intergenic |
| TTTGCTTAGAATATTCGTGG+TGG | 0.687765 | 4_4:+7275134 | Msa0667040:intron |
| ACTACTACGTAGTTTCACTG+AGG | 0.744932 | 4_4:+7276697 | Msa0667040:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAGAATAACAAAAA+GGG | - | chr4_4:7273839-7273858 | None:intergenic | 15.0% |
| !! | ATTAAAGAAGAATAACAAAA+AGG | - | chr4_4:7273840-7273859 | None:intergenic | 15.0% |
| !!! | TTTTTGTTATTCTTCTTTAA+TGG | + | chr4_4:7273839-7273858 | Msa0667040:exon | 15.0% |
| !!! | ATTATTTACTTTTTGCTTTT+TGG | + | chr4_4:7274218-7274237 | Msa0667040:intron | 15.0% |
| !!! | AATTTTCAGCTATTTATTTT+AGG | + | chr4_4:7274319-7274338 | Msa0667040:intron | 15.0% |
| !!! | TTAACATATAATGATTTTAG+AGG | - | chr4_4:7275047-7275066 | None:intergenic | 15.0% |
| !!! | TAATGATAGTTTTAAGTATA+TGG | + | chr4_4:7275336-7275355 | Msa0667040:intron | 15.0% |
| !! | TTATGTTTCATGAATATAAT+AGG | + | chr4_4:7275723-7275742 | Msa0667040:intron | 15.0% |
| !! | ATGAAAAATAAAAACCAATT+GGG | + | chr4_4:7275916-7275935 | Msa0667040:intron | 15.0% |
| !! | TGATATAAAATATATGAATG+AGG | + | chr4_4:7276403-7276422 | Msa0667040:intron | 15.0% |
| !!! | AACCTAAAAAGTGAATTTTA+GGG | - | chr4_4:7274426-7274445 | None:intergenic | 20.0% |
| !!! | GCTTATTTCTTAATACTATA+TGG | + | chr4_4:7274638-7274657 | Msa0667040:intron | 20.0% |
| !! | AATTAACTGTTATTGTTAAG+TGG | + | chr4_4:7274844-7274863 | Msa0667040:intron | 20.0% |
| !! | TTATACTAAAGAATCATGAT+TGG | - | chr4_4:7274905-7274924 | None:intergenic | 20.0% |
| !!! | AGTATAATAGCTTGAATTTT+AGG | + | chr4_4:7274918-7274937 | Msa0667040:intron | 20.0% |
| !! | TTTATATTGTCCTCTTATTA+TGG | + | chr4_4:7275080-7275099 | Msa0667040:intron | 20.0% |
| !! | ATTACTATATCCATAATAAG+AGG | - | chr4_4:7275093-7275112 | None:intergenic | 20.0% |
| !! | AATATGATAAATCAAAACAG+AGG | - | chr4_4:7275271-7275290 | None:intergenic | 20.0% |
| !! | TTAAATATAATCACATGTGT+CGG | + | chr4_4:7275372-7275391 | Msa0667040:intron | 20.0% |
| !! | TGATCTCAATATGTATATAT+AGG | - | chr4_4:7275682-7275701 | None:intergenic | 20.0% |
| !! | ATATACATATTGAGATCAAA+TGG | + | chr4_4:7275684-7275703 | Msa0667040:intron | 20.0% |
| !! | TATTCATGAAACATAATTCT+TGG | - | chr4_4:7275719-7275738 | None:intergenic | 20.0% |
| !! | ATGTTTAGGTATAAATATCA+TGG | - | chr4_4:7275898-7275917 | None:intergenic | 20.0% |
| !!! | GGTTTTTATTTTTCATGTTT+AGG | - | chr4_4:7275912-7275931 | None:intergenic | 20.0% |
| !! | CATGAAAAATAAAAACCAAT+TGG | + | chr4_4:7275915-7275934 | Msa0667040:intron | 20.0% |
| !! | TAAGAACAAGAAGAAAAAAT+TGG | - | chr4_4:7276250-7276269 | None:intergenic | 20.0% |
| ! | AAAATTGAGAAAGGATTGAA+GGG | - | chr4_4:7273808-7273827 | None:intergenic | 25.0% |
| ! | AAGATTCAAAGAAGAAAAAG+TGG | - | chr4_4:7273931-7273950 | None:intergenic | 25.0% |
| ! | AAAGAAACATTATGAGCAAT+AGG | - | chr4_4:7274077-7274096 | None:intergenic | 25.0% |
| ! | TATTGCTCATAATGTTTCTT+TGG | + | chr4_4:7274076-7274095 | Msa0667040:CDS | 25.0% |
| !!! | TAGATCTATTTTTTCTCCTT+AGG | + | chr4_4:7274263-7274282 | Msa0667040:intron | 25.0% |
| ! | AGTAACAACCTATGATAATA+GGG | - | chr4_4:7274345-7274364 | None:intergenic | 25.0% |
| !!! | ATCCCTAAAATTCACTTTTT+AGG | + | chr4_4:7274421-7274440 | Msa0667040:intron | 25.0% |
| !! | GAACCTAAAAAGTGAATTTT+AGG | - | chr4_4:7274427-7274446 | None:intergenic | 25.0% |
| !! | ATTGTTAAGTGGTAACTTTT+TGG | + | chr4_4:7274855-7274874 | Msa0667040:intron | 25.0% |
| !! | ATAATAGCTTGAATTTTAGG+AGG | + | chr4_4:7274921-7274940 | Msa0667040:intron | 25.0% |
| ! | TTATCTTGATGTTATTGTTG+TGG | + | chr4_4:7274960-7274979 | Msa0667040:intron | 25.0% |
| ! | TAAGAGGACAATATAAAACA+TGG | - | chr4_4:7275077-7275096 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTCCCTTCTTT+TGG | + | chr4_4:7275516-7275535 | Msa0667040:intron | 25.0% |
| ! | TGTTTCATGAATATAATAGG+TGG | + | chr4_4:7275726-7275745 | Msa0667040:intron | 25.0% |
| !!! | CTTTTTTATGACTGTCATTA+AGG | + | chr4_4:7275966-7275985 | Msa0667040:intron | 25.0% |
| !!! | TAAGGTTTTTGAAATCTCTA+TGG | + | chr4_4:7275984-7276003 | Msa0667040:intron | 25.0% |
| ! | TAATCTGAAAACATCTTCAA+TGG | - | chr4_4:7276126-7276145 | None:intergenic | 25.0% |
| ! | TATTACCAAAGTAATGTAAG+TGG | - | chr4_4:7276372-7276391 | None:intergenic | 25.0% |
| ! | TCATACATCATCTTAATCAA+TGG | - | chr4_4:7276489-7276508 | None:intergenic | 25.0% |
| ! | TAAATGAAATGTATTCTCCT+AGG | + | chr4_4:7276554-7276573 | Msa0667040:three_prime_UTR | 25.0% |
| ! | TTTAGTTGCTTAGTAAGAAT+TGG | + | chr4_4:7276608-7276627 | Msa0667040:three_prime_UTR | 25.0% |
| !!! | AAGCACTTTTGAAATTGTTT+TGG | + | chr4_4:7276925-7276944 | Msa0667040:three_prime_UTR | 25.0% |
| !!! | AGCACTTTTGAAATTGTTTT+GGG | + | chr4_4:7276926-7276945 | Msa0667040:three_prime_UTR | 25.0% |
| ! | TTTGTTCATAATAAACTCTC+TGG | + | chr4_4:7276984-7277003 | Msa0667040:three_prime_UTR | 25.0% |
| ! | TTGTTCATAATAAACTCTCT+GGG | + | chr4_4:7276985-7277004 | Msa0667040:three_prime_UTR | 25.0% |
| GAAAATTGAGAAAGGATTGA+AGG | - | chr4_4:7273809-7273828 | None:intergenic | 30.0% | |
| TTCTTCTTTGAATCTTCCTA+TGG | + | chr4_4:7273935-7273954 | Msa0667040:CDS | 30.0% | |
| TCTTTCTTGACTTCTTCAAA+CGG | - | chr4_4:7274041-7274060 | None:intergenic | 30.0% | |
| ! | ATTTTAGGCCCTATTATCAT+AGG | + | chr4_4:7274334-7274353 | Msa0667040:intron | 30.0% |
| GAGTAACAACCTATGATAAT+AGG | - | chr4_4:7274346-7274365 | None:intergenic | 30.0% | |
| ATAATGATGTAAATGCAGTG+TGG | + | chr4_4:7274496-7274515 | Msa0667040:intron | 30.0% | |
| TACAAGCTGAATCTTATAGA+GGG | - | chr4_4:7274618-7274637 | None:intergenic | 30.0% | |
| ! | ACTTTGTGAATTTTTGTGTG+TGG | + | chr4_4:7274677-7274696 | Msa0667040:intron | 30.0% |
| ! | AATTTTTGTGTGTGGATAAC+AGG | + | chr4_4:7274685-7274704 | Msa0667040:intron | 30.0% |
| TGGTATAGTGGTAAATAACA+TGG | + | chr4_4:7274875-7274894 | Msa0667040:intron | 30.0% | |
| CGAATATTCTAAGCAAATCA+AGG | - | chr4_4:7275131-7275150 | None:intergenic | 30.0% | |
| !! | TGATTTGCTTAGAATATTCG+TGG | + | chr4_4:7275131-7275150 | Msa0667040:intron | 30.0% |
| AGAATTTGATCATGCAGAAA+AGG | + | chr4_4:7275193-7275212 | Msa0667040:CDS | 30.0% | |
| GAATTTGATCATGCAGAAAA+GGG | + | chr4_4:7275194-7275213 | Msa0667040:CDS | 30.0% | |
| GAGTCAGCATAAATAGTTAA+AGG | - | chr4_4:7275493-7275512 | None:intergenic | 30.0% | |
| ATTCAAAAACAGAGAGAAAG+AGG | - | chr4_4:7275620-7275639 | None:intergenic | 30.0% | |
| GTTTCAACTTGACAACTTAA+AGG | - | chr4_4:7275824-7275843 | None:intergenic | 30.0% | |
| ! | GGAATCAAGATTTTAAACAG+TGG | - | chr4_4:7276105-7276124 | None:intergenic | 30.0% |
| ! | TATATGTATTTTCCTTGCAC+AGG | + | chr4_4:7276268-7276287 | Msa0667040:intron | 30.0% |
| !!! | CATTTGTTTTTGTTGCTTGT+AGG | + | chr4_4:7276436-7276455 | Msa0667040:intron | 30.0% |
| !!! | ACGTGTTGTTTTTACATTAC+TGG | + | chr4_4:7276522-7276541 | Msa0667040:three_prime_UTR | 30.0% |
| ! | TTCTACGTCTAAAATTACCT+AGG | - | chr4_4:7276574-7276593 | None:intergenic | 30.0% |
| CAAGCTACAAACAGTTATTA+TGG | - | chr4_4:7276636-7276655 | None:intergenic | 30.0% | |
| GTTAGAAATGAAAATGACGT+TGG | + | chr4_4:7276669-7276688 | Msa0667040:three_prime_UTR | 30.0% | |
| AATAAATGCACAGCTATCAT+TGG | + | chr4_4:7276733-7276752 | Msa0667040:three_prime_UTR | 30.0% | |
| ! | AGCTATCATTGGTGTTTATT+AGG | + | chr4_4:7276744-7276763 | Msa0667040:three_prime_UTR | 30.0% |
| TCAAATGTAACAATCCAAAC+AGG | - | chr4_4:7276889-7276908 | None:intergenic | 30.0% | |
| !!! | GCACTTTTGAAATTGTTTTG+GGG | + | chr4_4:7276927-7276946 | Msa0667040:three_prime_UTR | 30.0% |
| GTCGTTGAGAAAATTGAGAA+AGG | - | chr4_4:7273817-7273836 | None:intergenic | 35.0% | |
| TGGTGAAAAGATCGAAACTT+TGG | - | chr4_4:7273877-7273896 | None:intergenic | 35.0% | |
| TCTTTGAATCTTCCTATGGA+TGG | + | chr4_4:7273939-7273958 | Msa0667040:CDS | 35.0% | |
| CTATATTACTGTGCTTCCTA+AGG | - | chr4_4:7274282-7274301 | None:intergenic | 35.0% | |
| AAACAAAGAGTGGTACACAT+AGG | - | chr4_4:7274534-7274553 | None:intergenic | 35.0% | |
| CAAAGTATGCAAACAAAGAG+TGG | - | chr4_4:7274544-7274563 | None:intergenic | 35.0% | |
| !! | GGTTTTGTATCATCCTTACT+TGG | - | chr4_4:7274597-7274616 | None:intergenic | 35.0% |
| CTACAAGCTGAATCTTATAG+AGG | - | chr4_4:7274619-7274638 | None:intergenic | 35.0% | |
| TGTGGATAACAGGTTCTTTA+AGG | + | chr4_4:7274695-7274714 | Msa0667040:intron | 35.0% | |
| ! | GTTCTTTAAGGAATCTAGTG+AGG | + | chr4_4:7274707-7274726 | Msa0667040:CDS | 35.0% |
| !! | TACCAGGTTGGTATTTAACT+CGG | + | chr4_4:7274762-7274781 | Msa0667040:intron | 35.0% |
| !! | GTGGTAACTTTTTGGTATAG+TGG | + | chr4_4:7274863-7274882 | Msa0667040:intron | 35.0% |
| TTTGCTTAGAATATTCGTGG+TGG | + | chr4_4:7275134-7275153 | Msa0667040:intron | 35.0% | |
| TCTGCATGATCAAATTCTGA+GGG | - | chr4_4:7275191-7275210 | None:intergenic | 35.0% | |
| TTCTGCATGATCAAATTCTG+AGG | - | chr4_4:7275192-7275211 | None:intergenic | 35.0% | |
| GCTGAATCAAACCAAAAGAA+GGG | - | chr4_4:7275530-7275549 | None:intergenic | 35.0% | |
| TCGTAACAATGATCCTCAAT+TGG | + | chr4_4:7275753-7275772 | Msa0667040:CDS | 35.0% | |
| ! | ATTCTAAGCAGCTTGGTAAT+TGG | - | chr4_4:7276072-7276091 | None:intergenic | 35.0% |
| AGAAAACACCATGTTACTCT+TGG | - | chr4_4:7276184-7276203 | None:intergenic | 35.0% | |
| ! | TAATTGATTCAACCTGTGCA+AGG | - | chr4_4:7276283-7276302 | None:intergenic | 35.0% |
| ! | TCAACTGAGATTAGTTGGAA+AGG | + | chr4_4:7276325-7276344 | Msa0667040:CDS | 35.0% |
| ! | CAACTGAGATTAGTTGGAAA+GGG | + | chr4_4:7276326-7276345 | Msa0667040:CDS | 35.0% |
| TTCCTCCACTTACATTACTT+TGG | + | chr4_4:7276364-7276383 | Msa0667040:intron | 35.0% | |
| TACCAAAGTAATGTAAGTGG+AGG | - | chr4_4:7276369-7276388 | None:intergenic | 35.0% | |
| TAGTTTCACTGAGGAATGTT+TGG | + | chr4_4:7276706-7276725 | Msa0667040:three_prime_UTR | 35.0% | |
| GCGTAAGTTCAAACAAATTG+TGG | + | chr4_4:7276766-7276785 | Msa0667040:three_prime_UTR | 35.0% | |
| !! | CATAATAAACTCTCTGGGAT+AGG | + | chr4_4:7276990-7277009 | Msa0667040:three_prime_UTR | 35.0% |
| AGAGAGATGGTTAACAATGG+CGG | - | chr4_4:7273784-7273803 | None:intergenic | 40.0% | |
| GGAAGAGAGATGGTTAACAA+TGG | - | chr4_4:7273787-7273806 | None:intergenic | 40.0% | |
| ! | TTTTCACCATCACCTATCGT+GGG | + | chr4_4:7273888-7273907 | Msa0667040:CDS | 40.0% |
| TTTGAGAAATGACCCACGAT+AGG | - | chr4_4:7273903-7273922 | None:intergenic | 40.0% | |
| TTCCTATGGATGGTGATAAG+AGG | + | chr4_4:7273949-7273968 | Msa0667040:CDS | 40.0% | |
| TTCCTCTTATCACCATCCAT+AGG | - | chr4_4:7273954-7273973 | None:intergenic | 40.0% | |
| TGATAAGAGGAAGAACGTGA+AGG | + | chr4_4:7273962-7273981 | Msa0667040:CDS | 40.0% | |
| ATAACACCAGTTAATGCCGT+TGG | - | chr4_4:7274011-7274030 | None:intergenic | 40.0% | |
| TGAGAAGCTCATGAAATACC+AGG | + | chr4_4:7274746-7274765 | Msa0667040:CDS | 40.0% | |
| AAGCTCATGAAATACCAGGT+TGG | + | chr4_4:7274750-7274769 | Msa0667040:intron | 40.0% | |
| !! | ACCAGGTTGGTATTTAACTC+GGG | + | chr4_4:7274763-7274782 | Msa0667040:intron | 40.0% |
| ACTCGGGAAGTAAATCATGT+TGG | + | chr4_4:7274779-7274798 | Msa0667040:intron | 40.0% | |
| ! | CATGATCAAATTCTGAGGGA+GGG | - | chr4_4:7275187-7275206 | None:intergenic | 40.0% |
| GAAAAGGGAGATGCATTGTA+TGG | + | chr4_4:7275209-7275228 | Msa0667040:CDS | 40.0% | |
| CTGCAGATCGAAAACATGTT+TGG | - | chr4_4:7275423-7275442 | None:intergenic | 40.0% | |
| GGCTGAATCAAACCAAAAGA+AGG | - | chr4_4:7275531-7275550 | None:intergenic | 40.0% | |
| !!! | CTTTTGGTTTGATTCAGCCA+TGG | + | chr4_4:7275532-7275551 | Msa0667040:intron | 40.0% |
| GTTTGATTCAGCCATGGAAT+TGG | + | chr4_4:7275538-7275557 | Msa0667040:intron | 40.0% | |
| TCGATGAAATCTGCCAATTG+AGG | - | chr4_4:7275769-7275788 | None:intergenic | 40.0% | |
| ! | TTTCATCGAGAGCGAGTTTT+TGG | + | chr4_4:7275780-7275799 | Msa0667040:CDS | 40.0% |
| CAAAAATTGCAGTGCCCAAT+TGG | - | chr4_4:7275933-7275952 | None:intergenic | 40.0% | |
| CATTGCAATTCTAAGCAGCT+TGG | - | chr4_4:7276079-7276098 | None:intergenic | 40.0% | |
| ! | CTTTAGCTCCAAGAGTAACA+TGG | + | chr4_4:7276173-7276192 | Msa0667040:intron | 40.0% |
| GTGACTCAACTGAGATTAGT+TGG | + | chr4_4:7276320-7276339 | Msa0667040:CDS | 40.0% | |
| ! | AGATTAGTTGGAAAGGGTCA+CGG | + | chr4_4:7276332-7276351 | Msa0667040:CDS | 40.0% |
| !! | TTTTGTTGCTTGTAGGTGTG+TGG | + | chr4_4:7276443-7276462 | Msa0667040:intron | 40.0% |
| ACTACTACGTAGTTTCACTG+AGG | + | chr4_4:7276697-7276716 | Msa0667040:three_prime_UTR | 40.0% | |
| TTTCACTGAGGAATGTTTGG+TGG | + | chr4_4:7276709-7276728 | Msa0667040:three_prime_UTR | 40.0% | |
| TTGACCAAAACTCAAGCTCA+CGG | - | chr4_4:7276833-7276852 | None:intergenic | 40.0% | |
| ! | GTCAAACTTTGTTAGCTTCC+TGG | + | chr4_4:7276848-7276867 | Msa0667040:three_prime_UTR | 40.0% |
| TGTAACAATCCAAACAGGCA+AGG | - | chr4_4:7276884-7276903 | None:intergenic | 40.0% | |
| GCTTTGTGTGGTTGTGAAGA+GGG | - | chr4_4:7273762-7273781 | None:intergenic | 45.0% | |
| ! | TTAACAATGGCGGCTTTGTG+TGG | - | chr4_4:7273774-7273793 | None:intergenic | 45.0% |
| AGGATTGAAGGGAAGAGAGA+TGG | - | chr4_4:7273797-7273816 | None:intergenic | 45.0% | |
| ! | CTTTTCACCATCACCTATCG+TGG | + | chr4_4:7273887-7273906 | Msa0667040:CDS | 45.0% |
| AAATGACCCACGATAGGTGA+TGG | - | chr4_4:7273897-7273916 | None:intergenic | 45.0% | |
| AATGCACCAACGGCATTAAC+TGG | + | chr4_4:7274002-7274021 | Msa0667040:CDS | 45.0% | |
| AGAGACAACGTTGCTCTCAA+GGG | + | chr4_4:7274566-7274585 | Msa0667040:intron | 45.0% | |
| TCCCGAGTTAAATACCAACC+TGG | - | chr4_4:7274767-7274786 | None:intergenic | 45.0% | |
| ! | GAATATTCGTGGTGGAAGAG+TGG | + | chr4_4:7275142-7275161 | Msa0667040:intron | 45.0% |
| ! | GCATGATCAAATTCTGAGGG+AGG | - | chr4_4:7275188-7275207 | None:intergenic | 45.0% |
| CAAAGACAGAGCCAATTCCA+TGG | - | chr4_4:7275552-7275571 | None:intergenic | 45.0% | |
| !! | CATGGAATTGGCTCTGTCTT+TGG | + | chr4_4:7275550-7275569 | Msa0667040:CDS | 45.0% |
| TGACCAAAACTCAAGCTCAC+GGG | - | chr4_4:7276832-7276851 | None:intergenic | 45.0% | |
| TGTGGTTGTGAAGAGGGTGA+GGG | - | chr4_4:7273756-7273775 | None:intergenic | 50.0% | |
| ! | GGCTTTGTGTGGTTGTGAAG+AGG | - | chr4_4:7273763-7273782 | None:intergenic | 50.0% |
| TGCTGCTGCAAATGCACCAA+CGG | + | chr4_4:7273992-7274011 | Msa0667040:CDS | 50.0% | |
| CAGAGACAACGTTGCTCTCA+AGG | + | chr4_4:7274565-7274584 | Msa0667040:intron | 50.0% | |
| CTCAAGGGACTTGCCAAGTA+AGG | + | chr4_4:7274581-7274600 | Msa0667040:intron | 50.0% | |
| !!! | GAGCGAGTTTTTGGTAGAGC+AGG | + | chr4_4:7275789-7275808 | Msa0667040:CDS | 50.0% |
| CACGGGTCTAAGCATGTGTT+TGG | - | chr4_4:7276815-7276834 | None:intergenic | 50.0% | |
| ! | AGACCCGTGAGCTTGAGTTT+TGG | + | chr4_4:7276826-7276845 | Msa0667040:three_prime_UTR | 50.0% |
| TTCCTGCTACCTTGCCTGTT+TGG | + | chr4_4:7276872-7276891 | Msa0667040:three_prime_UTR | 50.0% | |
| ATCCAAACAGGCAAGGTAGC+AGG | - | chr4_4:7276877-7276896 | None:intergenic | 50.0% | |
| GTGAAGAGGGTGAGGGACAA+AGG | - | chr4_4:7273749-7273768 | None:intergenic | 55.0% | |
| GTGTGGTTGTGAAGAGGGTG+AGG | - | chr4_4:7273757-7273776 | None:intergenic | 55.0% | |
| CTGAGGGAGGGCTCACAATA+GGG | - | chr4_4:7275175-7275194 | None:intergenic | 55.0% | |
| TCTGAGGGAGGGCTCACAAT+AGG | - | chr4_4:7275176-7275195 | None:intergenic | 55.0% | |
| AGGCAAGGTAGCAGGAAGCC+AGG | - | chr4_4:7276869-7276888 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 7273737 | 7277022 | 7273737 | ID=Msa0667040;Name=Msa0667040 |
| chr4_4 | mRNA | 7273737 | 7277022 | 7273737 | ID=Msa0667040-mRNA-1;Parent=Msa0667040;Name=Msa0667040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=121|0.85|0.87|1|1|1|8|530|232 |
| chr4_4 | exon | 7273737 | 7274150 | 7273737 | ID=Msa0667040-mRNA-1:exon:2349;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7274568 | 7274597 | 7274568 | ID=Msa0667040-mRNA-1:exon:2350;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7274707 | 7274767 | 7274707 | ID=Msa0667040-mRNA-1:exon:2351;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7275143 | 7275230 | 7275143 | ID=Msa0667040-mRNA-1:exon:2352;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7275549 | 7275610 | 7275549 | ID=Msa0667040-mRNA-1:exon:2353;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7275745 | 7275810 | 7275745 | ID=Msa0667040-mRNA-1:exon:2354;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7276290 | 7276353 | 7276290 | ID=Msa0667040-mRNA-1:exon:2355;Parent=Msa0667040-mRNA-1 |
| chr4_4 | exon | 7276458 | 7277022 | 7276458 | ID=Msa0667040-mRNA-1:exon:2356;Parent=Msa0667040-mRNA-1 |
| chr4_4 | five_prime_UTR | 7273737 | 7273857 | 7273737 | ID=Msa0667040-mRNA-1:five_prime_utr;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7273858 | 7274150 | 7273858 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7274568 | 7274597 | 7274568 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7274707 | 7274767 | 7274707 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7275143 | 7275230 | 7275143 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7275549 | 7275610 | 7275549 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7275745 | 7275810 | 7275745 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7276290 | 7276353 | 7276290 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | CDS | 7276458 | 7276492 | 7276458 | ID=Msa0667040-mRNA-1:cds;Parent=Msa0667040-mRNA-1 |
| chr4_4 | three_prime_UTR | 7276493 | 7277022 | 7276493 | ID=Msa0667040-mRNA-1:three_prime_utr;Parent=Msa0667040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
