Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592150 | XP_003604990.1 | 86.000 | 150 | 0 | 1 | 1 | 129 | 70 | 219 | 3.71e-84 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592150 | sp|Q9MAS5|VA726_ARATH | 66.667 | 150 | 29 | 1 | 1 | 129 | 70 | 219 | 1.36e-62 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0592150 | Msa0592270 | 0.803824 | 2.899262e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592150 | MtrunA17_Chr4g0010271 | 86.000 | 150 | 0 | 1 | 1 | 129 | 70 | 219 | 3.42e-88 | 255 |
| Msa0592150 | MtrunA17_Chr1g0169861 | 64.000 | 150 | 33 | 1 | 1 | 129 | 120 | 269 | 1.55e-67 | 204 |
| Msa0592150 | MtrunA17_Chr2g0296021 | 61.745 | 149 | 36 | 1 | 2 | 129 | 71 | 219 | 1.79e-62 | 190 |
| Msa0592150 | MtrunA17_Chr7g0237561 | 72.000 | 150 | 21 | 1 | 1 | 129 | 70 | 219 | 6.23e-60 | 184 |
| Msa0592150 | MtrunA17_Chr4g0043521 | 67.200 | 125 | 20 | 1 | 2 | 105 | 73 | 197 | 8.96e-56 | 173 |
| Msa0592150 | MtrunA17_Chr4g0010211 | 94.118 | 85 | 5 | 0 | 1 | 85 | 9 | 93 | 2.13e-54 | 166 |
| Msa0592150 | MtrunA17_Chr7g0237521 | 65.873 | 126 | 22 | 1 | 1 | 105 | 70 | 195 | 2.08e-53 | 167 |
| Msa0592150 | MtrunA17_Chr2g0291651 | 63.200 | 125 | 25 | 1 | 2 | 105 | 75 | 199 | 8.16e-53 | 166 |
| Msa0592150 | MtrunA17_Chr1g0169851 | 56.716 | 134 | 22 | 1 | 1 | 98 | 21 | 154 | 2.34e-48 | 152 |
| Msa0592150 | MtrunA17_Chr1g0210521 | 42.857 | 168 | 56 | 2 | 2 | 129 | 71 | 238 | 4.72e-44 | 144 |
| Msa0592150 | MtrunA17_Chr5g0441741 | 33.562 | 146 | 74 | 3 | 2 | 126 | 69 | 212 | 2.06e-21 | 85.1 |
| Msa0592150 | MtrunA17_Chr4g0026121 | 29.730 | 148 | 81 | 4 | 2 | 128 | 69 | 214 | 4.94e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592150 | AT1G04760.2 | 66.667 | 150 | 29 | 1 | 1 | 129 | 70 | 219 | 1.38e-63 | 193 |
| Msa0592150 | AT1G04760.1 | 66.667 | 150 | 29 | 1 | 1 | 129 | 70 | 219 | 1.38e-63 | 193 |
| Msa0592150 | AT1G04750.1 | 71.333 | 150 | 22 | 1 | 1 | 129 | 70 | 219 | 6.94e-61 | 186 |
| Msa0592150 | AT2G32670.1 | 70.000 | 150 | 24 | 1 | 1 | 129 | 135 | 284 | 1.86e-60 | 187 |
| Msa0592150 | AT2G33120.1 | 70.667 | 150 | 23 | 1 | 1 | 129 | 70 | 219 | 5.56e-60 | 184 |
| Msa0592150 | AT2G33120.2 | 70.667 | 150 | 23 | 1 | 1 | 129 | 78 | 227 | 6.87e-60 | 184 |
| Msa0592150 | AT1G04750.2 | 70.922 | 141 | 20 | 1 | 10 | 129 | 1 | 141 | 8.03e-56 | 171 |
| Msa0592150 | AT1G04750.4 | 70.922 | 141 | 20 | 1 | 10 | 129 | 1 | 141 | 8.03e-56 | 171 |
| Msa0592150 | AT1G04750.3 | 70.922 | 141 | 20 | 1 | 10 | 129 | 1 | 141 | 8.03e-56 | 171 |
| Msa0592150 | AT2G33110.1 | 62.329 | 146 | 38 | 1 | 1 | 129 | 70 | 215 | 1.51e-47 | 152 |
| Msa0592150 | AT3G54300.3 | 41.667 | 168 | 58 | 2 | 2 | 129 | 71 | 238 | 6.54e-42 | 139 |
| Msa0592150 | AT3G54300.2 | 41.667 | 168 | 58 | 2 | 2 | 129 | 71 | 238 | 6.54e-42 | 139 |
| Msa0592150 | AT3G54300.1 | 41.667 | 168 | 58 | 2 | 2 | 129 | 71 | 238 | 6.54e-42 | 139 |
| Msa0592150 | AT2G33110.2 | 69.512 | 82 | 25 | 0 | 1 | 82 | 70 | 151 | 2.26e-38 | 128 |
| Msa0592150 | AT4G15780.1 | 65.263 | 95 | 33 | 0 | 2 | 96 | 72 | 166 | 1.34e-37 | 126 |
| Msa0592150 | AT5G11150.1 | 36.000 | 150 | 69 | 6 | 2 | 128 | 70 | 215 | 6.70e-23 | 89.7 |
| Msa0592150 | AT5G11150.2 | 35.811 | 148 | 68 | 6 | 2 | 126 | 70 | 213 | 7.81e-23 | 89.4 |
| Msa0592150 | AT5G22360.1 | 33.784 | 148 | 75 | 4 | 2 | 128 | 70 | 215 | 2.94e-22 | 87.8 |
| Msa0592150 | AT4G32150.1 | 32.192 | 146 | 76 | 3 | 2 | 126 | 69 | 212 | 3.00e-19 | 80.1 |
| Msa0592150 | AT2G33120.3 | 63.043 | 92 | 13 | 1 | 59 | 129 | 46 | 137 | 9.57e-18 | 74.3 |
| Msa0592150 | AT3G24890.2 | 42.553 | 94 | 27 | 1 | 44 | 110 | 14 | 107 | 5.45e-17 | 72.0 |
| Msa0592150 | AT2G25340.1 | 30.612 | 147 | 77 | 4 | 2 | 126 | 69 | 212 | 1.09e-14 | 67.8 |
Find 21 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTTAACAAAGAATT+TGG | 0.110351 | 4_2:-17287582 | Msa0592150:CDS |
| GCTCAAGTTTCTGAAGTTAA+AGG | 0.200850 | 4_2:-17287401 | Msa0592150:CDS |
| TGCTGCAGGCACAAGATTTC+AGG | 0.224795 | 4_2:-17286631 | Msa0592150:intron |
| ACCACATCTTTCTCCTCAAT+TGG | 0.292197 | 4_2:+17286597 | None:intergenic |
| TGCATTTGCTCCTTCAACTT+TGG | 0.326828 | 4_2:+17287473 | None:intergenic |
| ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | 4_2:+17287660 | None:intergenic |
| GCAAGTTTGCTAACTTCCTC+TGG | 0.381827 | 4_2:+17287434 | None:intergenic |
| TGAAGTTAAAGGAGTTATGA+TGG | 0.406422 | 4_2:-17287390 | Msa0592150:CDS |
| CCACATCTTTCTCCTCAATT+GGG | 0.430467 | 4_2:+17286598 | None:intergenic |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4_2:-17286624 | Msa0592150:CDS |
| ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | 4_2:-17286515 | Msa0592150:CDS |
| AAAGTCTTAACAAAGAATTT+GGG | 0.491739 | 4_2:-17287581 | Msa0592150:intron |
| ATGCATTAGACCAAAGTTGA+AGG | 0.514320 | 4_2:-17287483 | Msa0592150:intron |
| TTTAATAAAAGATATGGTGG+AGG | 0.542291 | 4_2:-17287627 | Msa0592150:CDS |
| GGCAGCAGGGAACCCAATTG+AGG | 0.564168 | 4_2:-17286610 | Msa0592150:CDS |
| ATGGTTAACAACTGAAGCCA+TGG | 0.597756 | 4_2:+17286498 | None:intergenic |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4_2:-17286623 | Msa0592150:CDS |
| CCCAATTGAGGAGAAAGATG+TGG | 0.650037 | 4_2:-17286598 | Msa0592150:CDS |
| ATATTGTGTGGAACATCCAG+AGG | 0.668552 | 4_2:-17287450 | Msa0592150:CDS |
| GGAGCAAATGCAATATTGTG+TGG | 0.673674 | 4_2:-17287462 | Msa0592150:CDS |
| TATGATGGAAAATATCGACA+AGG | 0.735916 | 4_2:-17287375 | Msa0592150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATGATTTTAATAAAAGATA+TGG | - | chr4_2:17286556-17286575 | Msa0592150:CDS | 15.0% |
| !! | ATTAACATGTAAATATATGT+TGG | + | chr4_2:17286664-17286683 | None:intergenic | 15.0% |
| !! | TTATATATGTAGATTGAATT+AGG | - | chr4_2:17287109-17287128 | Msa0592150:intron | 15.0% |
| !!! | GATGATTTTAATAAAAGATA+TGG | - | chr4_2:17286556-17286575 | Msa0592150:CDS | 15.0% |
| !! | ATTAACATGTAAATATATGT+TGG | + | chr4_2:17286664-17286683 | None:intergenic | 15.0% |
| !! | TTATATATGTAGATTGAATT+AGG | - | chr4_2:17287109-17287128 | Msa0592150:intron | 15.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | - | chr4_2:17286559-17286578 | Msa0592150:CDS | 20.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | - | chr4_2:17286607-17286626 | Msa0592150:CDS | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | - | chr4_2:17286608-17286627 | Msa0592150:CDS | 20.0% |
| !! | ATCTACATATATAAAACTGT+TGG | + | chr4_2:17287103-17287122 | None:intergenic | 20.0% |
| !!! | CATCTAAAACTATAAAACAT+TGG | + | chr4_2:17287313-17287332 | None:intergenic | 20.0% |
| !!! | CAATGTTTTATAGTTTTAGA+TGG | - | chr4_2:17287311-17287330 | Msa0592150:intron | 20.0% |
| !! | GTTGTAGTTATTTATTATCT+AGG | - | chr4_2:17287457-17287476 | Msa0592150:CDS | 20.0% |
| !! | TCCATTAAATTCTGAATTAT+TGG | - | chr4_2:17287510-17287529 | Msa0592150:intron | 20.0% |
| !! | TCCAATAATTCAGAATTTAA+TGG | + | chr4_2:17287514-17287533 | None:intergenic | 20.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | - | chr4_2:17286559-17286578 | Msa0592150:CDS | 20.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | - | chr4_2:17286607-17286626 | Msa0592150:CDS | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | - | chr4_2:17286608-17286627 | Msa0592150:CDS | 20.0% |
| !! | ATCTACATATATAAAACTGT+TGG | + | chr4_2:17287103-17287122 | None:intergenic | 20.0% |
| !!! | CATCTAAAACTATAAAACAT+TGG | + | chr4_2:17287313-17287332 | None:intergenic | 20.0% |
| !!! | CAATGTTTTATAGTTTTAGA+TGG | - | chr4_2:17287311-17287330 | Msa0592150:intron | 20.0% |
| !! | GTTGTAGTTATTTATTATCT+AGG | - | chr4_2:17287457-17287476 | Msa0592150:CDS | 20.0% |
| !! | TCCATTAAATTCTGAATTAT+TGG | - | chr4_2:17287510-17287529 | Msa0592150:intron | 20.0% |
| !! | TCCAATAATTCAGAATTTAA+TGG | + | chr4_2:17287514-17287533 | None:intergenic | 20.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | - | chr4_2:17286562-17286581 | Msa0592150:CDS | 25.0% |
| !! | CATATATAAAACTGTTGGTT+TGG | + | chr4_2:17287098-17287117 | None:intergenic | 25.0% |
| ! | ATGCATATAGTATTTAGATC+TGG | - | chr4_2:17287184-17287203 | Msa0592150:intron | 25.0% |
| ! | AAAACTAGATGTGAGAATTT+GGG | + | chr4_2:17287390-17287409 | None:intergenic | 25.0% |
| ! | TATTGGAATGTCAATTGAAA+TGG | - | chr4_2:17287527-17287546 | Msa0592150:intron | 25.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | - | chr4_2:17286562-17286581 | Msa0592150:CDS | 25.0% |
| !! | CATATATAAAACTGTTGGTT+TGG | + | chr4_2:17287098-17287117 | None:intergenic | 25.0% |
| ! | ATGCATATAGTATTTAGATC+TGG | - | chr4_2:17287184-17287203 | Msa0592150:intron | 25.0% |
| ! | AAAACTAGATGTGAGAATTT+GGG | + | chr4_2:17287390-17287409 | None:intergenic | 25.0% |
| ! | TATTGGAATGTCAATTGAAA+TGG | - | chr4_2:17287527-17287546 | Msa0592150:intron | 25.0% |
| ATACGTTCAAGAAAAGCTAT+TGG | + | chr4_2:17286532-17286551 | None:intergenic | 30.0% | |
| ! | AGCTTTTCTTGAACGTATTA+AGG | - | chr4_2:17286534-17286553 | Msa0592150:CDS | 30.0% |
| TGAAGTTAAAGGAGTTATGA+TGG | - | chr4_2:17286799-17286818 | Msa0592150:intron | 30.0% | |
| ! | TATGATGGAAAATATCGACA+AGG | - | chr4_2:17286814-17286833 | Msa0592150:intron | 30.0% |
| ! | ATTTTCTTGGACAATCATAG+AGG | + | chr4_2:17286875-17286894 | None:intergenic | 30.0% |
| ATTGAATTAGGAGATGATTC+TGG | - | chr4_2:17287121-17287140 | Msa0592150:intron | 30.0% | |
| !!! | TATAGTTTTAGATGGAGTTG+TGG | - | chr4_2:17287319-17287338 | Msa0592150:intron | 30.0% |
| GAAAACTAGATGTGAGAATT+TGG | + | chr4_2:17287391-17287410 | None:intergenic | 30.0% | |
| GAATGTCAATTGAAATGGTA+TGG | - | chr4_2:17287532-17287551 | Msa0592150:intron | 30.0% | |
| ATACGTTCAAGAAAAGCTAT+TGG | + | chr4_2:17286532-17286551 | None:intergenic | 30.0% | |
| ! | AGCTTTTCTTGAACGTATTA+AGG | - | chr4_2:17286534-17286553 | Msa0592150:CDS | 30.0% |
| TGAAGTTAAAGGAGTTATGA+TGG | - | chr4_2:17286799-17286818 | Msa0592150:intron | 30.0% | |
| ! | TATGATGGAAAATATCGACA+AGG | - | chr4_2:17286814-17286833 | Msa0592150:intron | 30.0% |
| ! | ATTTTCTTGGACAATCATAG+AGG | + | chr4_2:17286875-17286894 | None:intergenic | 30.0% |
| ATTGAATTAGGAGATGATTC+TGG | - | chr4_2:17287121-17287140 | Msa0592150:intron | 30.0% | |
| !!! | TATAGTTTTAGATGGAGTTG+TGG | - | chr4_2:17287319-17287338 | Msa0592150:intron | 30.0% |
| GAAAACTAGATGTGAGAATT+TGG | + | chr4_2:17287391-17287410 | None:intergenic | 30.0% | |
| GAATGTCAATTGAAATGGTA+TGG | - | chr4_2:17287532-17287551 | Msa0592150:intron | 30.0% | |
| ATGCATTAGACCAAAGTTGA+AGG | - | chr4_2:17286706-17286725 | Msa0592150:intron | 35.0% | |
| !! | GCTCAAGTTTCTGAAGTTAA+AGG | - | chr4_2:17286788-17286807 | Msa0592150:intron | 35.0% |
| !!! | AAGTGTCAGTGCTATTTTCT+TGG | + | chr4_2:17286888-17286907 | None:intergenic | 35.0% |
| CTTCACATTGAAGAACTGTT+CGG | - | chr4_2:17286905-17286924 | Msa0592150:intron | 35.0% | |
| ! | TTATGTGTCCGTGTATGTTT+TGG | - | chr4_2:17286954-17286973 | Msa0592150:intron | 35.0% |
| ! | ATGAAGCACCAAAACATACA+CGG | + | chr4_2:17286965-17286984 | None:intergenic | 35.0% |
| ! | ATTGTCTCTAGAGAAGATTG+AGG | - | chr4_2:17286994-17287013 | Msa0592150:intron | 35.0% |
| ! | TCTAGAGAAGATTGAGGTTT+TGG | - | chr4_2:17287000-17287019 | Msa0592150:intron | 35.0% |
| ACTCGAATGATGTCTTTGTT+TGG | - | chr4_2:17287213-17287232 | Msa0592150:intron | 35.0% | |
| ! | TTGTTTGGTTTAAGTGTGAG+TGG | - | chr4_2:17287228-17287247 | Msa0592150:intron | 35.0% |
| ATGCATTAGACCAAAGTTGA+AGG | - | chr4_2:17286706-17286725 | Msa0592150:intron | 35.0% | |
| !! | GCTCAAGTTTCTGAAGTTAA+AGG | - | chr4_2:17286788-17286807 | Msa0592150:intron | 35.0% |
| !!! | AAGTGTCAGTGCTATTTTCT+TGG | + | chr4_2:17286888-17286907 | None:intergenic | 35.0% |
| CTTCACATTGAAGAACTGTT+CGG | - | chr4_2:17286905-17286924 | Msa0592150:intron | 35.0% | |
| ! | TTATGTGTCCGTGTATGTTT+TGG | - | chr4_2:17286954-17286973 | Msa0592150:intron | 35.0% |
| ! | ATGAAGCACCAAAACATACA+CGG | + | chr4_2:17286965-17286984 | None:intergenic | 35.0% |
| ! | ATTGTCTCTAGAGAAGATTG+AGG | - | chr4_2:17286994-17287013 | Msa0592150:intron | 35.0% |
| ! | TCTAGAGAAGATTGAGGTTT+TGG | - | chr4_2:17287000-17287019 | Msa0592150:intron | 35.0% |
| ACTCGAATGATGTCTTTGTT+TGG | - | chr4_2:17287213-17287232 | Msa0592150:intron | 35.0% | |
| ! | TTGTTTGGTTTAAGTGTGAG+TGG | - | chr4_2:17287228-17287247 | Msa0592150:intron | 35.0% |
| TGCATTTGCTCCTTCAACTT+TGG | + | chr4_2:17286719-17286738 | None:intergenic | 40.0% | |
| GGAGCAAATGCAATATTGTG+TGG | - | chr4_2:17286727-17286746 | Msa0592150:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | - | chr4_2:17286739-17286758 | Msa0592150:intron | 40.0% | |
| GTTCGGTATCTACATGTCAT+TGG | - | chr4_2:17286922-17286941 | Msa0592150:intron | 40.0% | |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | - | chr4_2:17287003-17287022 | Msa0592150:intron | 40.0% |
| GTTGTGGTGTCTAAATCTCT+TGG | - | chr4_2:17287335-17287354 | Msa0592150:intron | 40.0% | |
| TTGATGCCTTAGAGATCACT+GGG | - | chr4_2:17287414-17287433 | Msa0592150:CDS | 40.0% | |
| CCACATCTTTCTCCTCAATT+GGG | + | chr4_2:17287594-17287613 | None:intergenic | 40.0% | |
| ACCACATCTTTCTCCTCAAT+TGG | + | chr4_2:17287595-17287614 | None:intergenic | 40.0% | |
| ATTGTTCTTTCTGTGTGCCA+TGG | - | chr4_2:17287674-17287693 | Msa0592150:CDS | 40.0% | |
| TGCATTTGCTCCTTCAACTT+TGG | + | chr4_2:17286719-17286738 | None:intergenic | 40.0% | |
| GGAGCAAATGCAATATTGTG+TGG | - | chr4_2:17286727-17286746 | Msa0592150:intron | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | - | chr4_2:17286739-17286758 | Msa0592150:intron | 40.0% | |
| GTTCGGTATCTACATGTCAT+TGG | - | chr4_2:17286922-17286941 | Msa0592150:intron | 40.0% | |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | - | chr4_2:17287003-17287022 | Msa0592150:intron | 40.0% |
| GTTGTGGTGTCTAAATCTCT+TGG | - | chr4_2:17287335-17287354 | Msa0592150:intron | 40.0% | |
| TTGATGCCTTAGAGATCACT+GGG | - | chr4_2:17287414-17287433 | Msa0592150:CDS | 40.0% | |
| CCACATCTTTCTCCTCAATT+GGG | + | chr4_2:17287594-17287613 | None:intergenic | 40.0% | |
| ACCACATCTTTCTCCTCAAT+TGG | + | chr4_2:17287595-17287614 | None:intergenic | 40.0% | |
| ATTGTTCTTTCTGTGTGCCA+TGG | - | chr4_2:17287674-17287693 | Msa0592150:CDS | 40.0% | |
| !! | GCAAGTTTGCTAACTTCCTC+TGG | + | chr4_2:17286758-17286777 | None:intergenic | 45.0% |
| AGAATCTAACCTGAGAGCGA+AGG | + | chr4_2:17287042-17287061 | None:intergenic | 45.0% | |
| GTTGATGCCTTAGAGATCAC+TGG | - | chr4_2:17287413-17287432 | Msa0592150:CDS | 45.0% | |
| TCGAATCCCAGTGATCTCTA+AGG | + | chr4_2:17287423-17287442 | None:intergenic | 45.0% | |
| ! | AAATGGTATGGCTTTGCTGC+AGG | - | chr4_2:17287544-17287563 | Msa0592150:intron | 45.0% |
| CCCAATTGAGGAGAAAGATG+TGG | - | chr4_2:17287591-17287610 | Msa0592150:CDS | 45.0% | |
| !! | GCAAGTTTGCTAACTTCCTC+TGG | + | chr4_2:17286758-17286777 | None:intergenic | 45.0% |
| AGAATCTAACCTGAGAGCGA+AGG | + | chr4_2:17287042-17287061 | None:intergenic | 45.0% | |
| GTTGATGCCTTAGAGATCAC+TGG | - | chr4_2:17287413-17287432 | Msa0592150:CDS | 45.0% | |
| TCGAATCCCAGTGATCTCTA+AGG | + | chr4_2:17287423-17287442 | None:intergenic | 45.0% | |
| ! | AAATGGTATGGCTTTGCTGC+AGG | - | chr4_2:17287544-17287563 | Msa0592150:intron | 45.0% |
| CCCAATTGAGGAGAAAGATG+TGG | - | chr4_2:17287591-17287610 | Msa0592150:CDS | 45.0% | |
| AACTGAGAACCTTCGCTCTC+AGG | - | chr4_2:17287030-17287049 | Msa0592150:intron | 50.0% | |
| TGCTGCAGGCACAAGATTTC+AGG | - | chr4_2:17287558-17287577 | Msa0592150:intron | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | - | chr4_2:17287566-17287585 | Msa0592150:intron | 50.0% | |
| AACTGAGAACCTTCGCTCTC+AGG | - | chr4_2:17287030-17287049 | Msa0592150:intron | 50.0% | |
| TGCTGCAGGCACAAGATTTC+AGG | - | chr4_2:17287558-17287577 | Msa0592150:intron | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | - | chr4_2:17287566-17287585 | Msa0592150:intron | 50.0% | |
| TGGGAGCAACTCGATGATCC+AGG | + | chr4_2:17287371-17287390 | None:intergenic | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | - | chr4_2:17287565-17287584 | Msa0592150:intron | 55.0% | |
| TGGGAGCAACTCGATGATCC+AGG | + | chr4_2:17287371-17287390 | None:intergenic | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | - | chr4_2:17287565-17287584 | Msa0592150:intron | 55.0% | |
| TCTCTTGGTCGTCGACGTCC+TGG | - | chr4_2:17287350-17287369 | Msa0592150:intron | 60.0% | |
| GGCAGCAGGGAACCCAATTG+AGG | - | chr4_2:17287579-17287598 | Msa0592150:intron | 60.0% | |
| TCTCTTGGTCGTCGACGTCC+TGG | - | chr4_2:17287350-17287369 | Msa0592150:intron | 60.0% | |
| GGCAGCAGGGAACCCAATTG+AGG | - | chr4_2:17287579-17287598 | Msa0592150:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 17286505 | 17287706 | 17286505 | ID=Msa0592150;Name=Msa0592150 |
| chr4_2 | mRNA | 17286505 | 17287706 | 17286505 | ID=Msa0592150-mRNA-1;Parent=Msa0592150;Name=Msa0592150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|0.33|3|0|129 |
| chr4_2 | exon | 17287582 | 17287706 | 17287582 | ID=Msa0592150-mRNA-1:exon:5019;Parent=Msa0592150-mRNA-1 |
| chr4_2 | exon | 17287376 | 17287496 | 17287376 | ID=Msa0592150-mRNA-1:exon:5018;Parent=Msa0592150-mRNA-1 |
| chr4_2 | exon | 17286505 | 17286645 | 17286505 | ID=Msa0592150-mRNA-1:exon:5017;Parent=Msa0592150-mRNA-1 |
| chr4_2 | CDS | 17287582 | 17287706 | 17287582 | ID=Msa0592150-mRNA-1:cds;Parent=Msa0592150-mRNA-1 |
| chr4_2 | CDS | 17287376 | 17287496 | 17287376 | ID=Msa0592150-mRNA-1:cds;Parent=Msa0592150-mRNA-1 |
| chr4_2 | CDS | 17286505 | 17286645 | 17286505 | ID=Msa0592150-mRNA-1:cds;Parent=Msa0592150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
