Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592480 | BBG95795.1 | 88.386 | 508 | 59 | 0 | 44 | 551 | 61 | 568 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592480 | sp|P10978|POLX_TOBAC | 59.649 | 513 | 205 | 2 | 41 | 551 | 813 | 1325 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0592480 | Msa1026640 | 0.803684 | 3.099327e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592480 | MtrunA17_Chr8g0351191 | 59.841 | 503 | 201 | 1 | 50 | 551 | 278 | 780 | 0.0 | 634 |
| Msa0592480 | MtrunA17_Chr7g0229241 | 44.553 | 514 | 278 | 5 | 44 | 551 | 772 | 1284 | 7.44e-140 | 439 |
| Msa0592480 | MtrunA17_Chr7g0219281 | 43.687 | 499 | 260 | 9 | 58 | 545 | 1 | 489 | 6.06e-135 | 403 |
| Msa0592480 | MtrunA17_Chr8g0363051 | 40.040 | 502 | 289 | 7 | 53 | 551 | 261 | 753 | 4.00e-127 | 392 |
| Msa0592480 | MtrunA17_Chr6g0474211 | 40.675 | 504 | 284 | 9 | 52 | 551 | 271 | 763 | 9.15e-126 | 389 |
| Msa0592480 | MtrunA17_Chr1g0213431 | 42.209 | 507 | 272 | 7 | 53 | 547 | 977 | 1474 | 6.75e-123 | 396 |
| Msa0592480 | MtrunA17_Chr3g0122161 | 42.209 | 507 | 272 | 7 | 53 | 547 | 988 | 1485 | 9.44e-123 | 396 |
| Msa0592480 | MtrunA17_Chr6g0480691 | 40.845 | 497 | 281 | 8 | 58 | 551 | 1 | 487 | 2.81e-122 | 371 |
| Msa0592480 | MtrunA17_Chr2g0320651 | 41.847 | 509 | 273 | 7 | 53 | 547 | 988 | 1487 | 1.67e-121 | 392 |
| Msa0592480 | MtrunA17_Chr2g0302511 | 40.369 | 488 | 272 | 8 | 54 | 535 | 115 | 589 | 1.48e-120 | 370 |
| Msa0592480 | MtrunA17_Chr8g0390891 | 39.382 | 518 | 292 | 9 | 43 | 551 | 468 | 972 | 2.77e-120 | 380 |
| Msa0592480 | MtrunA17_Chr3g0144121 | 38.953 | 516 | 297 | 8 | 43 | 551 | 837 | 1341 | 5.73e-118 | 381 |
| Msa0592480 | MtrunA17_Chr1g0208691 | 42.944 | 496 | 265 | 9 | 47 | 537 | 793 | 1275 | 1.47e-115 | 374 |
| Msa0592480 | MtrunA17_Chr5g0395921 | 40.472 | 509 | 282 | 7 | 48 | 544 | 851 | 1350 | 4.06e-114 | 370 |
| Msa0592480 | MtrunA17_Chr3g0122931 | 38.966 | 503 | 293 | 7 | 54 | 551 | 521 | 1014 | 2.77e-113 | 362 |
| Msa0592480 | MtrunA17_Chr4g0056611 | 39.960 | 503 | 289 | 7 | 52 | 551 | 462 | 954 | 7.99e-113 | 360 |
| Msa0592480 | MtrunA17_Chr1g0208701 | 42.946 | 482 | 257 | 9 | 47 | 523 | 793 | 1261 | 1.01e-112 | 366 |
| Msa0592480 | MtrunA17_Chr5g0447551 | 39.754 | 488 | 281 | 7 | 58 | 542 | 1 | 478 | 3.25e-112 | 353 |
| Msa0592480 | MtrunA17_Chr2g0279231 | 38.976 | 508 | 298 | 6 | 47 | 551 | 403 | 901 | 4.19e-112 | 357 |
| Msa0592480 | MtrunA17_Chr3g0101191 | 41.815 | 507 | 281 | 9 | 52 | 555 | 819 | 1314 | 2.18e-111 | 362 |
| Msa0592480 | MtrunA17_Chr6g0468801 | 38.760 | 516 | 269 | 8 | 42 | 551 | 300 | 774 | 6.23e-111 | 350 |
| Msa0592480 | MtrunA17_Chr7g0271061 | 38.723 | 501 | 293 | 6 | 47 | 542 | 995 | 1486 | 4.73e-108 | 355 |
| Msa0592480 | MtrunA17_Chr2g0319451 | 40.807 | 446 | 243 | 9 | 31 | 472 | 204 | 632 | 6.93e-108 | 338 |
| Msa0592480 | MtrunA17_Chr3g0117621 | 38.723 | 501 | 293 | 6 | 47 | 542 | 995 | 1486 | 1.58e-107 | 354 |
| Msa0592480 | MtrunA17_Chr7g0235811 | 37.087 | 515 | 308 | 9 | 44 | 551 | 94 | 599 | 2.55e-107 | 336 |
| Msa0592480 | MtrunA17_Chr3g0085391 | 36.382 | 492 | 286 | 6 | 54 | 544 | 15 | 480 | 6.35e-105 | 326 |
| Msa0592480 | MtrunA17_Chr1g0153361 | 36.800 | 500 | 305 | 6 | 54 | 551 | 1212 | 1702 | 7.21e-102 | 339 |
| Msa0592480 | MtrunA17_Chr8g0373061 | 44.231 | 364 | 192 | 5 | 58 | 419 | 1 | 355 | 1.49e-101 | 312 |
| Msa0592480 | MtrunA17_Chr2g0321931 | 41.039 | 385 | 210 | 7 | 43 | 421 | 202 | 575 | 1.64e-94 | 301 |
| Msa0592480 | MtrunA17_Chr1g0162991 | 36.829 | 410 | 242 | 7 | 134 | 540 | 2 | 397 | 2.48e-94 | 296 |
| Msa0592480 | MtrunA17_Chr2g0326511 | 40.665 | 391 | 212 | 8 | 165 | 545 | 1 | 381 | 8.29e-91 | 286 |
| Msa0592480 | MtrunA17_Chr8g0337151 | 36.923 | 390 | 232 | 7 | 165 | 551 | 1 | 379 | 1.65e-80 | 259 |
| Msa0592480 | MtrunA17_Chr1g0213471 | 38.384 | 396 | 231 | 6 | 153 | 544 | 2 | 388 | 1.24e-78 | 254 |
| Msa0592480 | MtrunA17_Chr5g0416531 | 38.462 | 325 | 189 | 6 | 125 | 448 | 1 | 315 | 3.65e-69 | 227 |
| Msa0592480 | MtrunA17_Chr3g0107241 | 35.955 | 267 | 160 | 5 | 248 | 512 | 2 | 259 | 1.62e-56 | 191 |
| Msa0592480 | MtrunA17_Chr6g0478321 | 37.218 | 266 | 154 | 7 | 210 | 472 | 1 | 256 | 1.02e-47 | 168 |
| Msa0592480 | MtrunA17_Chr7g0248591 | 36.245 | 229 | 143 | 3 | 328 | 554 | 12 | 239 | 5.07e-43 | 154 |
| Msa0592480 | MtrunA17_Chr5g0417451 | 34.884 | 258 | 156 | 5 | 284 | 538 | 1 | 249 | 9.22e-43 | 155 |
| Msa0592480 | MtrunA17_Chr1g0182471 | 34.555 | 191 | 123 | 2 | 366 | 554 | 1 | 191 | 4.68e-34 | 128 |
| Msa0592480 | MtrunA17_Chr7g0224631 | 38.824 | 170 | 96 | 3 | 301 | 469 | 1 | 163 | 2.13e-30 | 117 |
| Msa0592480 | MtrunA17_Chr1g0168011 | 38.372 | 172 | 104 | 2 | 366 | 535 | 1 | 172 | 9.63e-30 | 116 |
| Msa0592480 | MtrunA17_Chr4g0010201 | 85.714 | 63 | 9 | 0 | 552 | 614 | 923 | 985 | 1.43e-29 | 125 |
| Msa0592480 | MtrunA17_Chr4g0010251 | 66.304 | 92 | 23 | 2 | 530 | 614 | 891 | 981 | 1.15e-28 | 122 |
| Msa0592480 | MtrunA17_Chr7g0214321 | 35.602 | 191 | 115 | 3 | 366 | 551 | 1 | 188 | 1.33e-28 | 112 |
| Msa0592480 | MtrunA17_Chr1g0202521 | 37.209 | 172 | 106 | 2 | 366 | 535 | 1 | 172 | 6.43e-27 | 108 |
| Msa0592480 | MtrunA17_Chr4g0010221 | 80.952 | 63 | 12 | 0 | 552 | 614 | 922 | 984 | 9.24e-27 | 116 |
| Msa0592480 | MtrunA17_Chr4g0010261 | 79.365 | 63 | 13 | 0 | 552 | 614 | 925 | 987 | 2.76e-26 | 114 |
| Msa0592480 | MtrunA17_Chr4g0009781 | 76.190 | 63 | 15 | 0 | 552 | 614 | 922 | 984 | 1.14e-25 | 112 |
| Msa0592480 | MtrunA17_Chr2g0313121 | 46.729 | 107 | 53 | 2 | 30 | 135 | 213 | 316 | 2.16e-22 | 98.6 |
| Msa0592480 | MtrunA17_Chr8g0346291 | 49.412 | 85 | 43 | 0 | 467 | 551 | 1 | 85 | 2.25e-22 | 91.7 |
| Msa0592480 | MtrunA17_Chr6g0476561 | 56.579 | 76 | 32 | 1 | 58 | 132 | 1 | 76 | 4.13e-22 | 90.9 |
| Msa0592480 | MtrunA17_Chr1g0201931 | 40.196 | 102 | 60 | 1 | 179 | 279 | 1 | 102 | 1.36e-17 | 79.0 |
| Msa0592480 | MtrunA17_Chr8g0335561 | 37.273 | 110 | 65 | 2 | 366 | 471 | 1 | 110 | 2.01e-17 | 79.0 |
| Msa0592480 | MtrunA17_Chr4g0005281 | 34.351 | 131 | 85 | 1 | 406 | 535 | 23 | 153 | 2.24e-17 | 80.5 |
| Msa0592480 | MtrunA17_Chr2g0302321 | 39.535 | 86 | 52 | 0 | 106 | 191 | 5 | 90 | 2.15e-14 | 68.9 |
| Msa0592480 | MtrunA17_Chr6g0480111 | 48.214 | 56 | 29 | 0 | 165 | 220 | 1 | 56 | 5.05e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592480 | AT4G23160.3 | 39.474 | 456 | 260 | 7 | 54 | 502 | 98 | 544 | 6.97e-102 | 333 |
| Msa0592480 | AT4G23160.2 | 39.474 | 456 | 260 | 7 | 54 | 502 | 98 | 544 | 6.97e-102 | 333 |
| Msa0592480 | ATMG00810.1 | 37.021 | 235 | 133 | 6 | 231 | 462 | 3 | 225 | 7.16e-40 | 146 |
| Msa0592480 | ATMG00820.1 | 44.706 | 85 | 46 | 1 | 54 | 137 | 40 | 124 | 5.71e-17 | 79.3 |
Find 115 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAAGGATTCTCAGAAAA+AGG | 0.202212 | 4_2:-17865879 | Msa0592480:CDS |
| CTCATTGGGAAGCGGTTAAA+TGG | 0.246669 | 4_2:-17865266 | Msa0592480:CDS |
| ACTGCCTTGGAGCTTGTTTC+AGG | 0.257910 | 4_2:+17865814 | None:intergenic |
| GAGTTTGACATGAAGGATTT+AGG | 0.284362 | 4_2:-17865609 | Msa0592480:CDS |
| AGACTTCATTTCGTCTTTCA+TGG | 0.287589 | 4_2:+17866211 | None:intergenic |
| GGTCAGGCAAAGAAAATTCT+TGG | 0.298488 | 4_2:-17865588 | Msa0592480:CDS |
| AATGGTCGGCATTGCACTTC+TGG | 0.300679 | 4_2:+17865751 | None:intergenic |
| CAAGGATTGTTAACAGAGTT+AGG | 0.309549 | 4_2:-17864991 | Msa0592480:CDS |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 4_2:-17865378 | Msa0592480:CDS |
| CTCAAAGTGTTGAGGTTCTC+TGG | 0.351832 | 4_2:-17863951 | Msa0592480:CDS |
| CAGAGAACCTCAACACTTTG+AGG | 0.354602 | 4_2:+17863952 | None:intergenic |
| AGAAGGCACTTCACAACAAA+TGG | 0.365196 | 4_2:-17866142 | Msa0592480:CDS |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 4_2:+17865375 | None:intergenic |
| GTGAAGACTGCATTTCTTCA+TGG | 0.371375 | 4_2:-17865933 | Msa0592480:CDS |
| AGTCAATTCCTTCTTTCTGC+TGG | 0.374496 | 4_2:+17866051 | None:intergenic |
| GTGAAGTGCCTTCTTTCCCT+TGG | 0.376674 | 4_2:+17866151 | None:intergenic |
| AAGCTAGCAAAGAATTGATA+TGG | 0.378325 | 4_2:-17865017 | Msa0592480:CDS |
| TGCTCGCAATGGCGAGTGTT+TGG | 0.381850 | 4_2:-17867035 | None:intergenic |
| TATATATTTACTGTTGGTAC+TGG | 0.385714 | 4_2:-17865117 | Msa0592480:CDS |
| CAACGGTGTGCTAACTGATT+TGG | 0.388655 | 4_2:+17865470 | None:intergenic |
| CAAATCCAAGTAAAGCTCAT+TGG | 0.389002 | 4_2:-17865281 | Msa0592480:CDS |
| GTCAAAAGAGTTTGACATGA+AGG | 0.406586 | 4_2:-17865616 | Msa0592480:CDS |
| ATCACGAGAGATAAGCAAAA+AGG | 0.408718 | 4_2:-17865558 | Msa0592480:CDS |
| TATAACCAGTTGTACTTCTT+CGG | 0.409850 | 4_2:+17865136 | None:intergenic |
| GCTTCCCAATGAGCTTTACT+TGG | 0.412359 | 4_2:+17865276 | None:intergenic |
| ATGGTTGTTACAGTATGAAA+TGG | 0.413497 | 4_2:-17863989 | Msa0592480:CDS |
| AGCTAGTTCCCATGTCTGAT+TGG | 0.415259 | 4_2:+17866181 | None:intergenic |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 4_2:+17865324 | None:intergenic |
| AAAGGAGAGATAAAAGTAGA+AGG | 0.430824 | 4_2:-17865195 | Msa0592480:CDS |
| AAATCCAAGTAAAGCTCATT+GGG | 0.433329 | 4_2:-17865280 | Msa0592480:CDS |
| TGAAGTGCCTTCTTTCCCTT+GGG | 0.439456 | 4_2:+17866152 | None:intergenic |
| AGGTTAAAGAAGAGCTTGTA+TGG | 0.446251 | 4_2:-17865837 | Msa0592480:CDS |
| TACGTAGATGCAGACTTTGC+TGG | 0.450110 | 4_2:-17865171 | Msa0592480:CDS |
| GAATCCTTTGACCACTAGTC+GGG | 0.453142 | 4_2:+17866073 | None:intergenic |
| TGGTGAAGCTCAATACTATC+AGG | 0.460103 | 4_2:-17866007 | Msa0592480:CDS |
| AAAGAATTGATATGGCTTCA+AGG | 0.464626 | 4_2:-17865009 | Msa0592480:CDS |
| TAGTCAGAGTGCGATACATC+TGG | 0.470360 | 4_2:-17864935 | Msa0592480:CDS |
| CATATCTCTTCTTGAGGATG+AGG | 0.472652 | 4_2:-17864854 | Msa0592480:CDS |
| TGACATGAAGGATTTAGGTC+AGG | 0.472751 | 4_2:-17865604 | Msa0592480:CDS |
| ATTAATTAAATAGTTAAGAC+GGG | 0.473098 | 4_2:-17866282 | Msa0592480:intron |
| GTTGATGATATGTTAGTAGC+AGG | 0.473495 | 4_2:-17865678 | Msa0592480:CDS |
| ATGCAGTGGGAGTTATTAGC+AGG | 0.476069 | 4_2:-17865311 | Msa0592480:CDS |
| TTTCTGAGAATCCTTCTGGT+TGG | 0.477873 | 4_2:+17865883 | None:intergenic |
| TTGGTACTGGAGCAGTTAGT+TGG | 0.480220 | 4_2:-17865104 | Msa0592480:CDS |
| TGCTGAAGCATATGGAATCC+TGG | 0.487434 | 4_2:+17865383 | None:intergenic |
| AACTTCATATACCACTGCCT+TGG | 0.490906 | 4_2:+17865801 | None:intergenic |
| ACCTTTGTTAACATATCTGC+GGG | 0.491781 | 4_2:+17864796 | None:intergenic |
| GATCACCGAAGAAGTACAAC+TGG | 0.501627 | 4_2:-17865141 | Msa0592480:CDS |
| GGAAAGAGAATATGGTGTGC+AGG | 0.502412 | 4_2:-17865857 | Msa0592480:CDS |
| TGTATCTCTTAGAGCCATCA+TGG | 0.502829 | 4_2:+17866099 | None:intergenic |
| CTAACATTGATCAAAATTCA+AGG | 0.505718 | 4_2:-17864829 | Msa0592480:CDS |
| TATTCTCAGAGTTTGTTAAG+TGG | 0.508088 | 4_2:+17863884 | None:intergenic |
| AATTAATTAAATAGTTAAGA+CGG | 0.508383 | 4_2:-17866283 | Msa0592480:intron |
| AGTGGAGTCTTTCAACATCT+AGG | 0.521039 | 4_2:-17864071 | Msa0592480:CDS |
| TTGCTCGCAATGGCGAGCGA+TGG | 0.523390 | 4_2:-17866990 | Msa0592480:CDS |
| ACTGGTTATATATTTACTGT+TGG | 0.525618 | 4_2:-17865123 | Msa0592480:CDS |
| AAGTTGTGCTTAACTTCAGT+TGG | 0.531351 | 4_2:-17864754 | Msa0592480:CDS |
| TAAGTTACCCAAGGGAAAGA+AGG | 0.532589 | 4_2:-17866159 | Msa0592480:CDS |
| AAAATGAAATATTTACCTGA+GGG | 0.535032 | 4_2:-17863921 | Msa0592480:CDS |
| CTTTGATCTCCAATCAGACA+TGG | 0.535098 | 4_2:-17866190 | Msa0592480:CDS |
| GTAACGTGTCGAAGCCCCTC+AGG | 0.537909 | 4_2:+17863906 | None:intergenic |
| GATCCGTGCATTGATGAAGA+TGG | 0.537960 | 4_2:-17864008 | Msa0592480:CDS |
| AAAGGATTCCAGCAGAAAGA+AGG | 0.542053 | 4_2:-17866059 | Msa0592480:CDS |
| ATAGTATTGAGCTTCACCAC+TGG | 0.543144 | 4_2:+17866011 | None:intergenic |
| GATCAAACTCCTCGCAATTG+AGG | 0.543237 | 4_2:+17864027 | None:intergenic |
| GGAATCCTTTGACCACTAGT+CGG | 0.544373 | 4_2:+17866072 | None:intergenic |
| CGCAGATATGTTAACAAAGG+TGG | 0.548479 | 4_2:-17864794 | Msa0592480:CDS |
| AACACTCGCAAATGCGAGCT+AGG | 0.553145 | 4_2:+17866965 | None:intergenic |
| GAAGGCACTTCACAACAAAT+GGG | 0.553411 | 4_2:-17866141 | Msa0592480:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 4_2:-17865325 | Msa0592480:CDS |
| GAGGTGATTGTTCTTGAGAT+AGG | 0.554548 | 4_2:+17865433 | None:intergenic |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 4_2:-17865324 | Msa0592480:CDS |
| GAAAGCTTCATGCACAAGGA+AGG | 0.556828 | 4_2:-17865777 | Msa0592480:CDS |
| CAAATGGGTGTATCGAGTAA+AGG | 0.557507 | 4_2:-17866126 | Msa0592480:CDS |
| AGACCACAGATGCTAGTAAG+TGG | 0.560048 | 4_2:-17866241 | Msa0592480:CDS |
| TGCTAATAACTCCCACTGCA+TGG | 0.560279 | 4_2:+17865313 | None:intergenic |
| AACAGAGTTAGGATTCATGC+AGG | 0.560901 | 4_2:-17864980 | Msa0592480:CDS |
| TGAAACAAGCTCCAAGGCAG+TGG | 0.564334 | 4_2:-17865812 | Msa0592480:CDS |
| TCTTCATGGAGACTTAAATG+AGG | 0.565936 | 4_2:-17865919 | Msa0592480:CDS |
| TGTTGAATCTTTGCAAAACA+CGG | 0.570070 | 4_2:+17865502 | None:intergenic |
| CTCCCACTTACTAGCATCTG+TGG | 0.572913 | 4_2:+17866238 | None:intergenic |
| CTTCATCATATCTCTTCTTG+AGG | 0.573737 | 4_2:-17864860 | Msa0592480:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 4_2:-17865336 | Msa0592480:CDS |
| GTTTGAAAGCTTCATGCACA+AGG | 0.577553 | 4_2:-17865781 | Msa0592480:CDS |
| AAATGTTTGTACTTCAGCAA+AGG | 0.583697 | 4_2:-17865213 | Msa0592480:CDS |
| CTTGAAGAAGCAACAATGGT+CGG | 0.584556 | 4_2:+17865737 | None:intergenic |
| CACCTTTGTTAACATATCTG+CGG | 0.595625 | 4_2:+17864795 | None:intergenic |
| CATTCGAGAACAAAGCACAT+AGG | 0.597037 | 4_2:-17864895 | Msa0592480:CDS |
| CGAGTAAAGGAGGACCATGA+TGG | 0.601814 | 4_2:-17866113 | Msa0592480:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 4_2:-17865358 | Msa0592480:CDS |
| TCAAGAACAATCACCTCAGA+CGG | 0.606251 | 4_2:-17865427 | Msa0592480:CDS |
| AAGTAAAGCTCATTGGGAAG+CGG | 0.606511 | 4_2:-17865274 | Msa0592480:CDS |
| TTACGAACCTCAAAGTGTTG+AGG | 0.606781 | 4_2:-17863959 | Msa0592480:CDS |
| ATCTCTTGAAGAAGCAACAA+TGG | 0.607495 | 4_2:+17865733 | None:intergenic |
| CAAATCAGTTAGCACACCGT+TGG | 0.611705 | 4_2:-17865469 | Msa0592480:CDS |
| GACCACAGATGCTAGTAAGT+GGG | 0.622422 | 4_2:-17866240 | Msa0592480:CDS |
| GGAACTAGCTAAGTTACCCA+AGG | 0.629568 | 4_2:-17866168 | Msa0592480:CDS |
| AAAGCCCGACTAGTGGTCAA+AGG | 0.629799 | 4_2:-17866077 | Msa0592480:CDS |
| GAGATACAAAGCCCGACTAG+TGG | 0.630278 | 4_2:-17866084 | Msa0592480:CDS |
| CAACCATCTTCATCAATGCA+CGG | 0.631891 | 4_2:+17864005 | None:intergenic |
| AGAGTGCGATACATCTGGCA+AGG | 0.632756 | 4_2:-17864930 | Msa0592480:CDS |
| AAATGAAATATTTACCTGAG+GGG | 0.634211 | 4_2:-17863920 | Msa0592480:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.639853 | 4_2:-17865424 | Msa0592480:CDS |
| ATATACATGCACCAACCAGA+AGG | 0.648223 | 4_2:-17865894 | Msa0592480:CDS |
| TACATACTCAGCCTCTGTAG+TGG | 0.650098 | 4_2:+17865050 | None:intergenic |
| TCCCGCAGATATGTTAACAA+AGG | 0.657588 | 4_2:-17864797 | Msa0592480:CDS |
| ATGGCCTGAAACAAGCTCCA+AGG | 0.657891 | 4_2:-17865818 | Msa0592480:CDS |
| TTTGATCTCCAATCAGACAT+GGG | 0.670384 | 4_2:-17866189 | Msa0592480:CDS |
| ATGGGTGTATCGAGTAAAGG+AGG | 0.675575 | 4_2:-17866123 | Msa0592480:CDS |
| GAACTAGCTAAGTTACCCAA+GGG | 0.679428 | 4_2:-17866167 | Msa0592480:CDS |
| AGGCGAAAATGACTTGCCAA+CGG | 0.685111 | 4_2:+17865453 | None:intergenic |
| ATTGAGTATCCTCAATTGCG+AGG | 0.686147 | 4_2:-17864036 | Msa0592480:CDS |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 4_2:-17865347 | Msa0592480:CDS |
| TGTCGCTTTATCCACTACAG+AGG | 0.712638 | 4_2:-17865061 | Msa0592480:CDS |
| GAAGTACAAACATTTCTCTG+TGG | 0.727948 | 4_2:+17865221 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATATTAAAATT+GGG | + | chr4_2:17864438-17864457 | None:intergenic | 0.0% |
| !! | TAAAATAAAAATATTAAAAT+TGG | + | chr4_2:17864439-17864458 | None:intergenic | 0.0% |
| !! | AATTAATTAAATAGTTAAGA+CGG | - | chr4_2:17864643-17864662 | Msa0592480:intron | 10.0% |
| !! | ATTAATTAAATAGTTAAGAC+GGG | - | chr4_2:17864644-17864663 | Msa0592480:intron | 15.0% |
| !!! | TATTAAGAGTATGATTCTAT+AGG | + | chr4_2:17864228-17864247 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTGAGTATTGTT+AGG | + | chr4_2:17866830-17866849 | None:intergenic | 20.0% |
| !!! | CAGGTAAATATTTCATTTTT+GGG | + | chr4_2:17867004-17867023 | None:intergenic | 20.0% |
| !!! | TCAGGTAAATATTTCATTTT+TGG | + | chr4_2:17867005-17867024 | None:intergenic | 20.0% |
| !! | AAAAATGAAATATTTACCTG+AGG | - | chr4_2:17867004-17867023 | Msa0592480:CDS | 20.0% |
| !! | AAAATGAAATATTTACCTGA+GGG | - | chr4_2:17867005-17867024 | Msa0592480:CDS | 20.0% |
| ! | GATGATAATTAGATGCTAAT+TGG | + | chr4_2:17864073-17864092 | None:intergenic | 25.0% |
| ! | TAGCATCTAATTATCATCTT+AGG | - | chr4_2:17864075-17864094 | Msa0592480:intron | 25.0% |
| !! | ATCTTTCTAACATCTTTTCA+TGG | - | chr4_2:17864128-17864147 | Msa0592480:intron | 25.0% |
| ! | GAATTTAGCATGATTAGATT+AGG | + | chr4_2:17864203-17864222 | None:intergenic | 25.0% |
| ! | CGATTTATGAAGAAATTATG+TGG | + | chr4_2:17864534-17864553 | None:intergenic | 25.0% |
| ! | ACTGGTTATATATTTACTGT+TGG | - | chr4_2:17865803-17865822 | Msa0592480:CDS | 25.0% |
| ! | TATATATTTACTGTTGGTAC+TGG | - | chr4_2:17865809-17865828 | Msa0592480:CDS | 25.0% |
| ! | CTAACATTGATCAAAATTCA+AGG | - | chr4_2:17866097-17866116 | Msa0592480:CDS | 25.0% |
| !! | AATAATTGGTAGTAGGTAAT+TGG | - | chr4_2:17866450-17866469 | Msa0592480:intron | 25.0% |
| ! | AATACACTAATATGTTGTTG+TGG | + | chr4_2:17866559-17866578 | None:intergenic | 25.0% |
| !!! | AATTTTAGGAGAAAATTCCT+GGG | - | chr4_2:17866611-17866630 | Msa0592480:intron | 25.0% |
| ! | AAATGAAATATTTACCTGAG+GGG | - | chr4_2:17867006-17867025 | Msa0592480:CDS | 25.0% |
| !!! | AGTTGAGATTTTTAGGTTTC+TGG | + | chr4_2:17864023-17864042 | None:intergenic | 30.0% |
| ! | GGTGAAAAGTTGAGATTTTT+AGG | + | chr4_2:17864030-17864049 | None:intergenic | 30.0% |
| GATGAAAGAAACATGAGAAT+AGG | + | chr4_2:17864051-17864070 | None:intergenic | 30.0% | |
| ATCATCTTAGGCAATATCTA+AGG | - | chr4_2:17864087-17864106 | Msa0592480:intron | 30.0% | |
| !! | ATTAGGTTTTGGTGAGAATT+GGG | + | chr4_2:17864186-17864205 | None:intergenic | 30.0% |
| ! | AGCATGATTAGATTAGGTTT+TGG | + | chr4_2:17864197-17864216 | None:intergenic | 30.0% |
| TTTCTGCTATTATCAGGTAA+GGG | + | chr4_2:17864270-17864289 | None:intergenic | 30.0% | |
| ATTTCTGCTATTATCAGGTA+AGG | + | chr4_2:17864271-17864290 | None:intergenic | 30.0% | |
| !! | TATCGATTTCTGCTATTATC+AGG | + | chr4_2:17864276-17864295 | None:intergenic | 30.0% |
| ! | AAACAGAATACGTACGTTTT+TGG | + | chr4_2:17864344-17864363 | None:intergenic | 30.0% |
| TAGTAGTGAGAAGAGTAATT+AGG | + | chr4_2:17864394-17864413 | None:intergenic | 30.0% | |
| AGAAAAAGGGAAAGAGAATA+TGG | - | chr4_2:17865061-17865080 | Msa0592480:CDS | 30.0% | |
| TGTTGAATCTTTGCAAAACA+CGG | + | chr4_2:17865427-17865446 | None:intergenic | 30.0% | |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr4_2:17865427-17865446 | Msa0592480:CDS | 30.0% |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr4_2:17865428-17865447 | Msa0592480:CDS | 30.0% |
| AAATCCAAGTAAAGCTCATT+GGG | - | chr4_2:17865646-17865665 | Msa0592480:CDS | 30.0% | |
| AAATGTTTGTACTTCAGCAA+AGG | - | chr4_2:17865713-17865732 | Msa0592480:CDS | 30.0% | |
| AAAGGAGAGATAAAAGTAGA+AGG | - | chr4_2:17865731-17865750 | Msa0592480:CDS | 30.0% | |
| TATAACCAGTTGTACTTCTT+CGG | + | chr4_2:17865793-17865812 | None:intergenic | 30.0% | |
| AAGCTAGCAAAGAATTGATA+TGG | - | chr4_2:17865909-17865928 | Msa0592480:CDS | 30.0% | |
| AAAGAATTGATATGGCTTCA+AGG | - | chr4_2:17865917-17865936 | Msa0592480:CDS | 30.0% | |
| ! | ACTTGAAGACTGATTTCAAT+CGG | + | chr4_2:17866250-17866269 | None:intergenic | 30.0% |
| ATTGAAATCAGTCTTCAAGT+GGG | - | chr4_2:17866250-17866269 | Msa0592480:CDS | 30.0% | |
| ! | TCTTTTATTCACACATGCAA+TGG | + | chr4_2:17866302-17866321 | None:intergenic | 30.0% |
| ! | ACTTTCGGTCATTTAACTTT+CGG | + | chr4_2:17866339-17866358 | None:intergenic | 30.0% |
| ! | GTTAAATGACCGAAAGTTTT+TGG | - | chr4_2:17866342-17866361 | Msa0592480:intron | 30.0% |
| TGTCAAATGCCAAAAACTTT+CGG | + | chr4_2:17866354-17866373 | None:intergenic | 30.0% | |
| CAATACATGTTTGAAAAGCA+TGG | - | chr4_2:17866375-17866394 | Msa0592480:intron | 30.0% | |
| ! | AATTGTTGGTGAACATTGTT+GGG | - | chr4_2:17866399-17866418 | Msa0592480:intron | 30.0% |
| ! | TGCAATTGTTGGTGAATAAT+TGG | - | chr4_2:17866436-17866455 | Msa0592480:intron | 30.0% |
| TTGCAAGCAAGCTATTTATA+GGG | + | chr4_2:17866502-17866521 | None:intergenic | 30.0% | |
| TTTGCAAGCAAGCTATTTAT+AGG | + | chr4_2:17866503-17866522 | None:intergenic | 30.0% | |
| ! | AAACTCAGTGTGAGAATTTT+AGG | - | chr4_2:17866597-17866616 | Msa0592480:intron | 30.0% |
| !! | GAATTTTAGGAGAAAATTCC+TGG | - | chr4_2:17866610-17866629 | Msa0592480:intron | 30.0% |
| ! | GCTGCAGATCTTTTTAATAA+AGG | + | chr4_2:17866692-17866711 | None:intergenic | 30.0% |
| ACAAGATTGTTAACGAAGTT+CGG | + | chr4_2:17866742-17866761 | None:intergenic | 30.0% | |
| AAGTAGAAGTGGAATAAATG+CGG | + | chr4_2:17866776-17866795 | None:intergenic | 30.0% | |
| ATGGTTGTTACAGTATGAAA+TGG | - | chr4_2:17866937-17866956 | Msa0592480:intron | 30.0% | |
| TTGGTGAGAATTGGGAATTA+GGG | + | chr4_2:17864178-17864197 | None:intergenic | 35.0% | |
| TTTGGTGAGAATTGGGAATT+AGG | + | chr4_2:17864179-17864198 | None:intergenic | 35.0% | |
| !! | GATTAGGTTTTGGTGAGAAT+TGG | + | chr4_2:17864187-17864206 | None:intergenic | 35.0% |
| CAGAAAGAGAGAAGAACAAA+GGG | + | chr4_2:17864303-17864322 | None:intergenic | 35.0% | |
| TCAGAAAGAGAGAAGAACAA+AGG | + | chr4_2:17864304-17864323 | None:intergenic | 35.0% | |
| !! | CGTACGTTTTTGGAGAAAAA+GGG | + | chr4_2:17864334-17864353 | None:intergenic | 35.0% |
| !! | ACGTACGTTTTTGGAGAAAA+AGG | + | chr4_2:17864335-17864354 | None:intergenic | 35.0% |
| ATGTTGTGGAGTTGTTATGT+TGG | + | chr4_2:17864503-17864522 | None:intergenic | 35.0% | |
| ATGTGGAGTATATGATGTTG+TGG | + | chr4_2:17864517-17864536 | None:intergenic | 35.0% | |
| AGACTTCATTTCGTCTTTCA+TGG | + | chr4_2:17864718-17864737 | None:intergenic | 35.0% | |
| TTTGATCTCCAATCAGACAT+GGG | - | chr4_2:17864737-17864756 | Msa0592480:intron | 35.0% | |
| TCTTCATGGAGACTTAAATG+AGG | - | chr4_2:17865007-17865026 | Msa0592480:CDS | 35.0% | |
| CAGAAGGATTCTCAGAAAAA+GGG | - | chr4_2:17865048-17865067 | Msa0592480:CDS | 35.0% | |
| AGGTTAAAGAAGAGCTTGTA+TGG | - | chr4_2:17865089-17865108 | Msa0592480:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr4_2:17865196-17865215 | None:intergenic | 35.0% | |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr4_2:17865248-17865267 | Msa0592480:CDS | 35.0% |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr4_2:17865310-17865329 | Msa0592480:CDS | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr4_2:17865317-17865336 | Msa0592480:CDS | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr4_2:17865368-17865387 | Msa0592480:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr4_2:17865548-17865567 | Msa0592480:CDS | 35.0% | |
| CAAATCCAAGTAAAGCTCAT+TGG | - | chr4_2:17865645-17865664 | Msa0592480:CDS | 35.0% | |
| !! | AAGCGGTTAAATGGATTTTG+AGG | - | chr4_2:17865669-17865688 | Msa0592480:CDS | 35.0% |
| !!! | TGGATTTTGAGGTATCTAAG+AGG | - | chr4_2:17865680-17865699 | Msa0592480:CDS | 35.0% |
| GAAGTACAAACATTTCTCTG+TGG | + | chr4_2:17865708-17865727 | None:intergenic | 35.0% | |
| CAAGGATTGTTAACAGAGTT+AGG | - | chr4_2:17865935-17865954 | Msa0592480:CDS | 35.0% | |
| CTTCATCATATCTCTTCTTG+AGG | - | chr4_2:17866066-17866085 | Msa0592480:CDS | 35.0% | |
| ACCTTTGTTAACATATCTGC+GGG | + | chr4_2:17866133-17866152 | None:intergenic | 35.0% | |
| CACCTTTGTTAACATATCTG+CGG | + | chr4_2:17866134-17866153 | None:intergenic | 35.0% | |
| AAGTTGTGCTTAACTTCAGT+TGG | - | chr4_2:17866172-17866191 | Msa0592480:CDS | 35.0% | |
| TTAGAATAAGAGACCAGAGA+AGG | - | chr4_2:17866199-17866218 | Msa0592480:CDS | 35.0% | |
| GATTGAAATCAGTCTTCAAG+TGG | - | chr4_2:17866249-17866268 | Msa0592480:CDS | 35.0% | |
| TTATTCACACATGCAATGGT+GGG | + | chr4_2:17866298-17866317 | None:intergenic | 35.0% | |
| TTTATTCACACATGCAATGG+TGG | + | chr4_2:17866299-17866318 | None:intergenic | 35.0% | |
| ! | TTGAAAAGCATGGCAATTGT+TGG | - | chr4_2:17866385-17866404 | Msa0592480:intron | 35.0% |
| ! | CAATTGTTGGTGAACATTGT+TGG | - | chr4_2:17866398-17866417 | Msa0592480:intron | 35.0% |
| CAACAATTGCACTATGTAGT+AGG | + | chr4_2:17866427-17866446 | None:intergenic | 35.0% | |
| CTACTACATAGTGCAATTGT+TGG | - | chr4_2:17866425-17866444 | Msa0592480:intron | 35.0% | |
| ! | GTTGGTGAATAATTGGTAGT+AGG | - | chr4_2:17866443-17866462 | Msa0592480:intron | 35.0% |
| TGCAAGCAAGCTATTTATAG+GGG | + | chr4_2:17866501-17866520 | None:intergenic | 35.0% | |
| GTTCTGTGTTGTGATTACAA+TGG | + | chr4_2:17866526-17866545 | None:intergenic | 35.0% | |
| AGAAAATTCCTGGGTGTAAT+TGG | - | chr4_2:17866620-17866639 | Msa0592480:intron | 35.0% | |
| GAAAATTCCTGGGTGTAATT+GGG | - | chr4_2:17866621-17866640 | Msa0592480:intron | 35.0% | |
| ATGGTCAGATTAAGTAGAAG+TGG | + | chr4_2:17866787-17866806 | None:intergenic | 35.0% | |
| ACTTCTACTTAATCTGACCA+TGG | - | chr4_2:17866786-17866805 | Msa0592480:intron | 35.0% | |
| CTTCTACTTAATCTGACCAT+GGG | - | chr4_2:17866787-17866806 | Msa0592480:intron | 35.0% | |
| TTCTACTTAATCTGACCATG+GGG | - | chr4_2:17866788-17866807 | Msa0592480:intron | 35.0% | |
| ! | CTCAATTTGAAATCTCTCAG+TGG | - | chr4_2:17866837-17866856 | Msa0592480:intron | 35.0% |
| AAAGAGAGAAGAACAAAGGG+AGG | + | chr4_2:17864300-17864319 | None:intergenic | 40.0% | |
| CTTTGATCTCCAATCAGACA+TGG | - | chr4_2:17864736-17864755 | Msa0592480:intron | 40.0% | |
| GAACTAGCTAAGTTACCCAA+GGG | - | chr4_2:17864759-17864778 | Msa0592480:CDS | 40.0% | |
| TAAGTTACCCAAGGGAAAGA+AGG | - | chr4_2:17864767-17864786 | Msa0592480:CDS | 40.0% | |
| !! | AGAAGGCACTTCACAACAAA+TGG | - | chr4_2:17864784-17864803 | Msa0592480:CDS | 40.0% |
| !! | GAAGGCACTTCACAACAAAT+GGG | - | chr4_2:17864785-17864804 | Msa0592480:CDS | 40.0% |
| CAAATGGGTGTATCGAGTAA+AGG | - | chr4_2:17864800-17864819 | Msa0592480:CDS | 40.0% | |
| TGTATCTCTTAGAGCCATCA+TGG | + | chr4_2:17864830-17864849 | None:intergenic | 40.0% | |
| AAAGGATTCCAGCAGAAAGA+AGG | - | chr4_2:17864867-17864886 | Msa0592480:CDS | 40.0% | |
| AGTCAATTCCTTCTTTCTGC+TGG | + | chr4_2:17864878-17864897 | None:intergenic | 40.0% | |
| ! | ATAGTATTGAGCTTCACCAC+TGG | + | chr4_2:17864918-17864937 | None:intergenic | 40.0% |
| TGGTGAAGCTCAATACTATC+AGG | - | chr4_2:17864919-17864938 | Msa0592480:CDS | 40.0% | |
| ! | CTCAAGATAGAGATTTTCGC+TGG | + | chr4_2:17864964-17864983 | None:intergenic | 40.0% |
| GTGAAGACTGCATTTCTTCA+TGG | - | chr4_2:17864993-17865012 | Msa0592480:CDS | 40.0% | |
| ATATACATGCACCAACCAGA+AGG | - | chr4_2:17865032-17865051 | Msa0592480:CDS | 40.0% | |
| ! | TTTCTGAGAATCCTTCTGGT+TGG | + | chr4_2:17865046-17865065 | None:intergenic | 40.0% |
| !! | CCTTTTTCTGAGAATCCTTC+TGG | + | chr4_2:17865050-17865069 | None:intergenic | 40.0% |
| CCAGAAGGATTCTCAGAAAA+AGG | - | chr4_2:17865047-17865066 | Msa0592480:CDS | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr4_2:17865128-17865147 | None:intergenic | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr4_2:17865145-17865164 | Msa0592480:CDS | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr4_2:17865192-17865211 | None:intergenic | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr4_2:17865322-17865341 | Msa0592480:CDS | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr4_2:17865338-17865357 | Msa0592480:CDS | 40.0% | |
| GAGGTGATTGTTCTTGAGAT+AGG | + | chr4_2:17865496-17865515 | None:intergenic | 40.0% | |
| TCAAGAACAATCACCTCAGA+CGG | - | chr4_2:17865499-17865518 | Msa0592480:CDS | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr4_2:17865520-17865539 | Msa0592480:CDS | 40.0% | |
| AAGAAAAAGAACTCATGGCC+AGG | - | chr4_2:17865525-17865544 | Msa0592480:CDS | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr4_2:17865554-17865573 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr4_2:17865568-17865587 | Msa0592480:CDS | 40.0% | |
| AAGTAAAGCTCATTGGGAAG+CGG | - | chr4_2:17865652-17865671 | Msa0592480:CDS | 40.0% | |
| AACAGAGTTAGGATTCATGC+AGG | - | chr4_2:17865946-17865965 | Msa0592480:CDS | 40.0% | |
| CATTCGAGAACAAAGCACAT+AGG | - | chr4_2:17866031-17866050 | Msa0592480:CDS | 40.0% | |
| CATATCTCTTCTTGAGGATG+AGG | - | chr4_2:17866072-17866091 | Msa0592480:CDS | 40.0% | |
| TCCCGCAGATATGTTAACAA+AGG | - | chr4_2:17866129-17866148 | Msa0592480:CDS | 40.0% | |
| CGCAGATATGTTAACAAAGG+TGG | - | chr4_2:17866132-17866151 | Msa0592480:CDS | 40.0% | |
| CTCTGGTCTCTTATTCTAAC+AGG | + | chr4_2:17866198-17866217 | None:intergenic | 40.0% | |
| ! | GGTAGTAGGTAATTGGTAGT+AGG | - | chr4_2:17866457-17866476 | Msa0592480:intron | 40.0% |
| ! | TAGGTAATTGGTAGTAGGTG+AGG | - | chr4_2:17866462-17866481 | Msa0592480:intron | 40.0% |
| AGTGGAGTCTTTCAACATCT+AGG | - | chr4_2:17866855-17866874 | Msa0592480:intron | 40.0% | |
| ATTGAGTATCCTCAATTGCG+AGG | - | chr4_2:17866890-17866909 | Msa0592480:intron | 40.0% | |
| CAACCATCTTCATCAATGCA+CGG | + | chr4_2:17866924-17866943 | None:intergenic | 40.0% | |
| !! | TTACGAACCTCAAAGTGTTG+AGG | - | chr4_2:17866967-17866986 | Msa0592480:CDS | 40.0% |
| AGACCACAGATGCTAGTAAG+TGG | - | chr4_2:17864685-17864704 | Msa0592480:intron | 45.0% | |
| GACCACAGATGCTAGTAAGT+GGG | - | chr4_2:17864686-17864705 | Msa0592480:intron | 45.0% | |
| AGCTAGTTCCCATGTCTGAT+TGG | + | chr4_2:17864748-17864767 | None:intergenic | 45.0% | |
| GGAACTAGCTAAGTTACCCA+AGG | - | chr4_2:17864758-17864777 | Msa0592480:CDS | 45.0% | |
| ! | TGAAGTGCCTTCTTTCCCTT+GGG | + | chr4_2:17864777-17864796 | None:intergenic | 45.0% |
| ATGGGTGTATCGAGTAAAGG+AGG | - | chr4_2:17864803-17864822 | Msa0592480:CDS | 45.0% | |
| GAATCCTTTGACCACTAGTC+GGG | + | chr4_2:17864856-17864875 | None:intergenic | 45.0% | |
| GGAATCCTTTGACCACTAGT+CGG | + | chr4_2:17864857-17864876 | None:intergenic | 45.0% | |
| CACCACTGGAGCAAAAATCT+CGG | + | chr4_2:17864904-17864923 | None:intergenic | 45.0% | |
| GGAAAGAGAATATGGTGTGC+AGG | - | chr4_2:17865069-17865088 | Msa0592480:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr4_2:17865149-17865168 | Msa0592480:CDS | 45.0% | |
| CAACGGTGTGCTAACTGATT+TGG | + | chr4_2:17865459-17865478 | None:intergenic | 45.0% | |
| CAAATCAGTTAGCACACCGT+TGG | - | chr4_2:17865457-17865476 | Msa0592480:CDS | 45.0% | |
| ! | AGGCGAAAATGACTTGCCAA+CGG | + | chr4_2:17865476-17865495 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr4_2:17865515-17865534 | None:intergenic | 45.0% |
| TGCTGAAGCATATGGAATCC+TGG | + | chr4_2:17865546-17865565 | None:intergenic | 45.0% | |
| TGCTAATAACTCCCACTGCA+TGG | + | chr4_2:17865616-17865635 | None:intergenic | 45.0% | |
| ATGCAGTGGGAGTTATTAGC+AGG | - | chr4_2:17865615-17865634 | Msa0592480:CDS | 45.0% | |
| GCTTCCCAATGAGCTTTACT+TGG | + | chr4_2:17865653-17865672 | None:intergenic | 45.0% | |
| CTCATTGGGAAGCGGTTAAA+TGG | - | chr4_2:17865660-17865679 | Msa0592480:CDS | 45.0% | |
| TACGTAGATGCAGACTTTGC+TGG | - | chr4_2:17865755-17865774 | Msa0592480:CDS | 45.0% | |
| ! | GATCACCGAAGAAGTACAAC+TGG | - | chr4_2:17865785-17865804 | Msa0592480:CDS | 45.0% |
| ! | TTGGTACTGGAGCAGTTAGT+TGG | - | chr4_2:17865822-17865841 | Msa0592480:CDS | 45.0% |
| !! | TGTCGCTTTATCCACTACAG+AGG | - | chr4_2:17865865-17865884 | Msa0592480:CDS | 45.0% |
| TACATACTCAGCCTCTGTAG+TGG | + | chr4_2:17865879-17865898 | None:intergenic | 45.0% | |
| TAGTCAGAGTGCGATACATC+TGG | - | chr4_2:17865991-17866010 | Msa0592480:CDS | 45.0% | |
| GTCTTCAAGTGGGAGATTGT+TGG | - | chr4_2:17866260-17866279 | Msa0592480:CDS | 45.0% | |
| AGTGGGAGATTGTTGGCAAA+TGG | - | chr4_2:17866267-17866286 | Msa0592480:CDS | 45.0% | |
| GGAGATTGTTGGCAAATGGA+GGG | - | chr4_2:17866271-17866290 | Msa0592480:CDS | 45.0% | |
| AACTACGCACAATTTCCCCA+TGG | + | chr4_2:17866806-17866825 | None:intergenic | 45.0% | |
| GATCAAACTCCTCGCAATTG+AGG | + | chr4_2:17866902-17866921 | None:intergenic | 45.0% | |
| ! | GATCCGTGCATTGATGAAGA+TGG | - | chr4_2:17866918-17866937 | Msa0592480:intron | 45.0% |
| CAGAGAACCTCAACACTTTG+AGG | + | chr4_2:17866977-17866996 | None:intergenic | 45.0% | |
| !! | CTCAAAGTGTTGAGGTTCTC+TGG | - | chr4_2:17866975-17866994 | Msa0592480:CDS | 45.0% |
| !! | GCGAGTTGTTTTGCTCGCAA+TGG | - | chr4_2:17863926-17863945 | Msa0592480:CDS | 50.0% |
| AACACTCGCAAATGCGAGCT+AGG | + | chr4_2:17863964-17863983 | None:intergenic | 50.0% | |
| GCGAGCGATGAATGTCAGTA+CGG | - | chr4_2:17863997-17864016 | Msa0592480:CDS | 50.0% | |
| CTCCCACTTACTAGCATCTG+TGG | + | chr4_2:17864691-17864710 | None:intergenic | 50.0% | |
| ! | GTGAAGTGCCTTCTTTCCCT+TGG | + | chr4_2:17864778-17864797 | None:intergenic | 50.0% |
| CGAGTAAAGGAGGACCATGA+TGG | - | chr4_2:17864813-17864832 | Msa0592480:CDS | 50.0% | |
| GAGATACAAAGCCCGACTAG+TGG | - | chr4_2:17864842-17864861 | Msa0592480:CDS | 50.0% | |
| AAAGCCCGACTAGTGGTCAA+AGG | - | chr4_2:17864849-17864868 | Msa0592480:CDS | 50.0% | |
| ! | CACCGAGATTTTTGCTCCAG+TGG | - | chr4_2:17864899-17864918 | Msa0592480:CDS | 50.0% |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr4_2:17865108-17865127 | Msa0592480:CDS | 50.0% | |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr4_2:17865115-17865134 | None:intergenic | 50.0% |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr4_2:17865114-17865133 | Msa0592480:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr4_2:17865178-17865197 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr4_2:17865502-17865521 | Msa0592480:CDS | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr4_2:17865579-17865598 | Msa0592480:CDS | 50.0% | |
| AGAGTGCGATACATCTGGCA+AGG | - | chr4_2:17865996-17866015 | Msa0592480:CDS | 50.0% | |
| GGGAGATTGTTGGCAAATGG+AGG | - | chr4_2:17866270-17866289 | Msa0592480:CDS | 50.0% | |
| ! | TCCTGGGTGTAATTGGGTTG+TGG | - | chr4_2:17866627-17866646 | Msa0592480:intron | 50.0% |
| ! | CCTGGGTGTAATTGGGTTGT+GGG | - | chr4_2:17866628-17866647 | Msa0592480:intron | 50.0% |
| AAAGATCTGCAGCAGCAGTC+CGG | - | chr4_2:17866699-17866718 | Msa0592480:intron | 50.0% | |
| GTCCGGAGAGTAGGCATTAT+TGG | - | chr4_2:17866716-17866735 | Msa0592480:intron | 50.0% | |
| GGCCAATAATGCCTACTCTC+CGG | + | chr4_2:17866721-17866740 | None:intergenic | 50.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr4_2:17865590-17865609 | Msa0592480:CDS | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr4_2:17865602-17865621 | Msa0592480:CDS | 55.0% | |
| GATCATGCAGCAGCCTTCTC+TGG | + | chr4_2:17866215-17866234 | None:intergenic | 55.0% | |
| AGAAGGCTGCTGCATGATCG+AGG | - | chr4_2:17866216-17866235 | Msa0592480:CDS | 55.0% | |
| CCCACAACCCAATTACACCC+AGG | + | chr4_2:17866631-17866650 | None:intergenic | 55.0% | |
| TTGCTCGCAATGGCGAGCGA+TGG | - | chr4_2:17863936-17863955 | Msa0592480:CDS | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr4_2:17865601-17865620 | Msa0592480:CDS | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr4_2:17865605-17865624 | None:intergenic | 60.0% | |
| GTAACGTGTCGAAGCCCCTC+AGG | + | chr4_2:17867023-17867042 | None:intergenic | 60.0% | |
| GCAGCAGCAGTCCGGAGAGT+AGG | - | chr4_2:17866707-17866726 | Msa0592480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 17863899 | 17867049 | 17863899 | ID=Msa0592480;Name=Msa0592480 |
| chr4_2 | mRNA | 17863899 | 17867049 | 17863899 | ID=Msa0592480-mRNA-1;Parent=Msa0592480;Name=Msa0592480-mRNA-1;_AED=0.93;_eAED=0.93;_QI=0|0|0|0.33|1|1|3|0|614 |
| chr4_2 | exon | 17866939 | 17867049 | 17866939 | ID=Msa0592480-mRNA-1:exon:5155;Parent=Msa0592480-mRNA-1 |
| chr4_2 | exon | 17864751 | 17866291 | 17864751 | ID=Msa0592480-mRNA-1:exon:5154;Parent=Msa0592480-mRNA-1 |
| chr4_2 | exon | 17863899 | 17864091 | 17863899 | ID=Msa0592480-mRNA-1:exon:5153;Parent=Msa0592480-mRNA-1 |
| chr4_2 | CDS | 17866939 | 17867049 | 17866939 | ID=Msa0592480-mRNA-1:cds;Parent=Msa0592480-mRNA-1 |
| chr4_2 | CDS | 17864751 | 17866291 | 17864751 | ID=Msa0592480-mRNA-1:cds;Parent=Msa0592480-mRNA-1 |
| chr4_2 | CDS | 17863899 | 17864091 | 17863899 | ID=Msa0592480-mRNA-1:cds;Parent=Msa0592480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
