AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026640 MtrunA17_Chr1g0208031 98.603 358 5 0 1 358 1 358 0.0 723
Msa1026640 MtrunA17_Chr5g0411911 52.023 346 166 0 9 354 13 358 3.56e-124 361
Msa1026640 MtrunA17_Chr5g0411801 51.312 343 167 0 9 351 43 385 1.78e-122 358
Msa1026640 MtrunA17_Chr5g0411871 52.000 350 168 0 2 351 19 368 5.45e-122 356
Msa1026640 MtrunA17_Chr5g0411841 52.507 339 161 0 13 351 15 353 9.73e-122 355
Msa1026640 MtrunA17_Chr4g0064291 50.708 353 172 1 1 351 1 353 1.57e-120 352
Msa1026640 MtrunA17_Chr5g0411901 50.729 343 169 0 9 351 12 354 1.73e-120 352
Msa1026640 MtrunA17_Chr5g0411881 50.146 343 171 0 9 351 12 354 5.67e-120 351
Msa1026640 MtrunA17_Chr5g0411821 52.507 339 161 0 13 351 15 353 3.06e-119 350
Msa1026640 MtrunA17_Chr5g0411931 50.729 343 169 0 9 351 11 353 4.79e-119 348
Msa1026640 MtrunA17_Chr8g0367151 52.478 343 163 0 9 351 11 353 1.24e-118 347
Msa1026640 MtrunA17_Chr5g0411811 53.097 339 159 0 13 351 15 353 1.34e-116 342
Msa1026640 MtrunA17_Chr5g0411941 51.297 347 169 0 8 354 10 356 6.41e-114 335
Msa1026640 MtrunA17_Chr1g0157021 49.280 347 175 1 9 354 10 356 4.02e-109 323
Msa1026640 MtrunA17_Chr8g0383721 50.292 342 169 1 13 354 15 355 2.29e-108 321
Msa1026640 MtrunA17_Chr5g0411791 51.863 322 155 0 30 351 6 327 8.44e-105 311
Msa1026640 MtrunA17_Chr2g0279791 44.759 353 193 2 3 354 53 404 1.78e-99 300
Msa1026640 MtrunA17_Chr2g0279801 41.706 211 112 2 144 354 13 212 1.94e-41 144
Msa1026640 MtrunA17_Chr8g0385221 25.269 372 242 10 13 351 56 424 5.26e-24 102
Msa1026640 MtrunA17_Chr5g0411851 50.820 61 30 0 9 69 11 71 2.81e-18 79.7
Msa1026640 MtrunA17_Chr5g0411861 44.068 59 33 0 296 354 2 60 8.19e-14 65.9
Msa1026640 MtrunA17_Chr5g0440521 25.000 340 221 9 35 342 44 381 4.63e-13 69.7
Msa1026640 MtrunA17_Chr3g0125961 23.582 335 226 8 37 342 37 370 3.09e-11 64.3
Msa1026640 MtrunA17_Chr3g0125911 23.881 335 225 8 37 342 37 370 3.09e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026640 AT3G19450.1 76.536 358 84 0 1 358 1 358 0.0 525
Msa1026640 AT4G34230.1 77.311 357 80 1 1 357 1 356 5.34e-178 498
Msa1026640 AT4G34230.2 77.031 357 81 1 1 357 1 356 6.20e-177 495
Msa1026640 AT2G21890.1 49.432 352 177 1 8 358 4 355 2.31e-121 355
Msa1026640 AT4G39330.1 50.877 342 168 0 13 354 15 356 2.41e-120 352
Msa1026640 AT2G21730.1 49.292 353 177 2 8 358 4 356 6.47e-120 351
Msa1026640 AT4G37970.1 48.830 342 175 0 13 354 16 357 3.70e-118 347
Msa1026640 AT4G37990.1 51.009 347 170 0 8 354 6 352 1.54e-113 335
Msa1026640 AT4G37980.1 47.839 347 181 0 8 354 6 352 7.88e-108 320
Msa1026640 AT1G72680.1 43.503 354 199 1 1 354 1 353 1.57e-97 293
Msa1026640 AT4G39330.2 49.481 289 146 0 13 301 15 303 1.36e-96 290
Msa1026640 AT4G37970.4 47.857 280 146 0 13 292 16 295 2.10e-89 271
Msa1026640 AT4G37980.2 48.239 284 146 1 8 290 6 289 1.08e-82 254
Msa1026640 AT4G37970.3 50.000 228 114 0 13 240 16 243 7.48e-75 232
Msa1026640 AT4G37970.2 50.000 228 114 0 13 240 16 243 1.14e-74 232
Msa1026640 AT5G63620.1 26.005 373 238 12 13 351 58 426 5.47e-24 102
Msa1026640 AT5G63620.2 25.737 373 239 12 13 351 58 426 8.80e-24 102
Msa1026640 AT5G63620.3 28.870 239 145 6 13 229 58 293 1.74e-21 94.0
Msa1026640 AT1G32780.1 25.439 342 215 10 37 339 37 377 4.70e-14 73.2
Msa1026640 AT1G22430.2 26.254 339 211 13 37 340 42 376 1.97e-13 71.2
Msa1026640 AT1G22430.1 26.254 339 211 13 37 340 42 376 1.97e-13 71.2
Msa1026640 AT1G64710.2 23.512 336 224 10 37 340 13 347 1.34e-11 65.5
Msa1026640 AT1G64710.1 23.512 336 224 10 37 340 36 370 1.74e-11 65.5
Msa1026640 AT4G22110.2 24.478 335 218 11 37 338 43 375 2.15e-11 65.1
Msa1026640 AT4G22110.1 24.478 335 218 11 37 338 43 375 2.15e-11 65.1

Find 116 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGTCCACTTTCACATTT+TGG 0.140332 7_1:+58844071 Msa1026640:CDS
GAAACTAAAGCAATAATATT+TGG 0.171337 7_1:-58845426 None:intergenic
CAGAGGAGATGTTGGAGTTT+TGG 0.195897 7_1:+58844846 Msa1026640:CDS
TCTCTTCATTCATTCACTTT+TGG 0.211828 7_1:+58842650 Msa1026640:five_prime_UTR
CCCAGGAACCATAGGATAAT+TGG 0.245188 7_1:-58843018 None:intergenic
CATGATTGAAATTGTAACTA+TGG 0.253443 7_1:+58844889 Msa1026640:CDS
GCTTACCTAATATTTGAAAC+TGG 0.254010 7_1:+58845363 Msa1026640:three_prime_UTR
ATGTCCCAGTTTCAAATATT+AGG 0.285207 7_1:-58845368 None:intergenic
TCCAATTATCCTATGGTTCC+TGG 0.314697 7_1:+58843017 Msa1026640:CDS
AAGCAATAATATTTGGCATT+TGG 0.317520 7_1:-58845419 None:intergenic
AGTCGTGTTTGCTTTGCTTT+TGG 0.333364 7_1:+58845285 Msa1026640:three_prime_UTR
CTTTCATTGCTCAAAATTGA+TGG 0.339894 7_1:+58844350 Msa1026640:CDS
TGGGCTAAGAGGTGGAATAT+TGG 0.354895 7_1:+58844106 Msa1026640:CDS
TCAATTACTGGAAGCTTTGT+TGG 0.375046 7_1:+58844809 Msa1026640:CDS
GGGCTAAGAGGTGGAATATT+GGG 0.377765 7_1:+58844107 Msa1026640:CDS
CATAGTTACAATTTCAATCA+TGG 0.394791 7_1:-58844888 None:intergenic
GGCTCAAGAGGGTGACCAAC+AGG 0.414159 7_1:-58844323 None:intergenic
TCTTCAATTTGTTACACCTA+TGG 0.415794 7_1:+58844406 Msa1026640:CDS
AAAGAGGCACTTGAGGATCT+TGG 0.422297 7_1:+58844218 Msa1026640:CDS
TGATGGGAAATTGATCTTGA+TGG 0.430428 7_1:+58844367 Msa1026640:CDS
AACAATGGTGCAACTTGCTC+TGG 0.430947 7_1:-58844029 None:intergenic
TGCTCTGGTGCCAATCCCTC+TGG 0.434175 7_1:-58844014 None:intergenic
CAATTACTGGAAGCTTTGTT+GGG 0.441579 7_1:+58844810 Msa1026640:CDS
GTGAAAGTAGCAAAGGCATT+AGG 0.442216 7_1:+58844155 Msa1026640:CDS
TTGTTGTGTTTGTATAATTG+AGG 0.442514 7_1:+58845067 Msa1026640:three_prime_UTR
CATGATTGCTTAGGGAATGA+AGG 0.442522 7_1:+58845463 Msa1026640:three_prime_UTR
AGAAGAATGATGTGAGGTAT+AGG 0.457166 7_1:+58844942 Msa1026640:CDS
CCGTCCTATGTTATTCCAAC+GGG 0.464767 7_1:+58845505 Msa1026640:three_prime_UTR
GTAGGGAGGAAGTCAATTAC+TGG 0.465862 7_1:+58844797 Msa1026640:intron
TGGCATTTGGCATACGTGTA+TGG 0.466430 7_1:-58845406 None:intergenic
TTGTTAGCTCAGATACTGTT+GGG 0.467194 7_1:+58844255 Msa1026640:CDS
CTTGTTAGCTCAGATACTGT+TGG 0.468029 7_1:+58844254 Msa1026640:CDS
GTTTCAAATATTAGGTAAGC+AGG 0.470896 7_1:-58845360 None:intergenic
AGTGCAAACGTGAGTGGGAT+TGG 0.475366 7_1:-58842617 None:intergenic
TGGCATGTCCAATTATCCTA+TGG 0.476856 7_1:+58843010 Msa1026640:CDS
ACGTGAGTGGGATTGGTTAG+TGG 0.477400 7_1:-58842610 None:intergenic
GAAGGAGACAGAGGAGATGT+TGG 0.486422 7_1:+58844838 Msa1026640:CDS
TACAATGATGTTTACACTGA+CGG 0.486763 7_1:+58843358 Msa1026640:CDS
CTCCATACACATACACTCTC+AGG 0.487023 7_1:+58842769 Msa1026640:CDS
TTTCATTGCTCAAAATTGAT+GGG 0.487627 7_1:+58844351 Msa1026640:CDS
AATACTGCAACAAGAAGATC+TGG 0.488627 7_1:+58843332 Msa1026640:CDS
AAGTAAATTTGAGGAGTGAA+AGG 0.492257 7_1:+58844985 Msa1026640:exon
TGTGAAAATACCAGAGGGAT+TGG 0.495073 7_1:+58844004 Msa1026640:CDS
TTGGCTGCAAAAGACCCTTC+CGG 0.496088 7_1:+58842738 Msa1026640:CDS
CACCTGAGAGTGTATGTGTA+TGG 0.504281 7_1:-58842771 None:intergenic
TTCAGCCCAAAATGTGAAAG+TGG 0.506368 7_1:-58844077 None:intergenic
AGAGGTGGAATATTGGGTCT+TGG 0.506833 7_1:+58844113 Msa1026640:CDS
GAAAACAGTGCAAACGTGAG+TGG 0.508827 7_1:-58842623 None:intergenic
GTTGCACCATTGTTGTGTGC+AGG 0.511420 7_1:+58844038 Msa1026640:CDS
CTTGGTGGAGTAGGACACAT+GGG 0.512497 7_1:+58844131 Msa1026640:CDS
TGTGTATGGAGTGAGAATTC+CGG 0.512818 7_1:-58842757 None:intergenic
CTTACCTAATATTTGAAACT+GGG 0.515181 7_1:+58845364 Msa1026640:three_prime_UTR
GGTGGAATATTGGGTCTTGG+TGG 0.517471 7_1:+58844116 Msa1026640:CDS
AAAATATTTGATAAATCACT+TGG 0.517804 7_1:+58845587 Msa1026640:three_prime_UTR
CTGAAAACACCTGGGCTAAG+AGG 0.518039 7_1:+58844095 Msa1026640:CDS
CCAATTATCCTATGGTTCCT+GGG 0.521261 7_1:+58843018 Msa1026640:CDS
CGTGAGTGGGATTGGTTAGT+GGG 0.524978 7_1:-58842609 None:intergenic
GTGGGAGTTGGTCTTCTCGT+TGG 0.525528 7_1:+58843268 Msa1026640:CDS
GTTCAAAGTGGGAGAAATTG+TGG 0.526442 7_1:+58843249 Msa1026640:CDS
GTGGGAGAAATTGTGGGAGT+TGG 0.528018 7_1:+58843256 Msa1026640:CDS
AGAAAGAACAACAGTAGGAT+TGG 0.528316 7_1:+58842719 Msa1026640:CDS
GAAGAAGAAAGAGGCACTTG+AGG 0.529985 7_1:+58844211 Msa1026640:CDS
TGTCAAAGGAAGTAAATTTG+AGG 0.531733 7_1:+58844976 Msa1026640:CDS
AGTAAATTTGAGGAGTGAAA+GGG 0.536045 7_1:+58844986 Msa1026640:exon
GGTTGGTGAGGTACTAGAGG+TGG 0.538320 7_1:+58843210 Msa1026640:CDS
CATACATACCCAGGAACCAT+AGG 0.538858 7_1:-58843026 None:intergenic
GATGGGAAATTGATCTTGAT+GGG 0.539815 7_1:+58844368 Msa1026640:CDS
GTTACACCTATGGTCATGCT+AGG 0.542756 7_1:+58844416 Msa1026640:CDS
TTCAAAGTGGGAGAAATTGT+GGG 0.545521 7_1:+58843250 Msa1026640:CDS
ATCATTGACACTGTTCCTGT+TGG 0.558930 7_1:+58844308 Msa1026640:CDS
ATATTGGGTCTTGGTGGAGT+AGG 0.559461 7_1:+58844122 Msa1026640:CDS
TTCTGATAAGAAGAAGAAAG+AGG 0.560483 7_1:+58844202 Msa1026640:CDS
AGGTGGGTTCAAATGTTACA+AGG 0.565769 7_1:+58843227 Msa1026640:CDS
GTTGGTGAGGTACTAGAGGT+GGG 0.567462 7_1:+58843211 Msa1026640:CDS
AGGTTCGTTGTGGATGTCAA+AGG 0.573106 7_1:+58844962 Msa1026640:CDS
AGGTAAAGATTTGTCAAAGT+AGG 0.575343 7_1:-58845340 None:intergenic
AAGTCCCGTTGGAATAACAT+AGG 0.576858 7_1:-58845509 None:intergenic
TAGGGAATGAAGGTATTGCA+TGG 0.578144 7_1:+58845473 Msa1026640:three_prime_UTR
TACATCAAAATTCATTACTG+TGG 0.582501 7_1:+58842948 Msa1026640:CDS
TCCGTCCTATGTTATTCCAA+CGG 0.584475 7_1:+58845504 Msa1026640:three_prime_UTR
AGGGAATGAAGGTATTGCAT+GGG 0.585204 7_1:+58845474 Msa1026640:three_prime_UTR
CCCGTTGGAATAACATAGGA+CGG 0.587997 7_1:-58845505 None:intergenic
TTGGTGGAGTAGGACACATG+GGG 0.596788 7_1:+58844132 Msa1026640:CDS
AAATGTTACAAGGTTCAAAG+TGG 0.597798 7_1:+58843237 Msa1026640:CDS
AAAACAGTGCAAACGTGAGT+GGG 0.598960 7_1:-58842622 None:intergenic
AATGTTACAAGGTTCAAAGT+GGG 0.599126 7_1:+58843238 Msa1026640:CDS
ACTCTCGTTCTCAAAAGAGT+TGG 0.599535 7_1:-58845265 None:intergenic
TAGGTGTAACAAATTGAAGA+GGG 0.600517 7_1:-58844403 None:intergenic
ATAGGTGTAACAAATTGAAG+AGG 0.601584 7_1:-58844404 None:intergenic
AATATTCCACCTCTTAGCCC+AGG 0.603820 7_1:-58844104 None:intergenic
AAAACACCTGGGCTAAGAGG+TGG 0.604672 7_1:+58844098 Msa1026640:CDS
GTGAGTATAATAAGTCCCGT+TGG 0.605685 7_1:-58845520 None:intergenic
AATGAAAGATAAGGCTCAAG+AGG 0.608696 7_1:-58844335 None:intergenic
TCTTGGTGGAGTAGGACACA+TGG 0.610428 7_1:+58844130 Msa1026640:CDS
GCTGCAGAAAGAACAACAGT+AGG 0.613158 7_1:+58842714 Msa1026640:CDS
TGTGAGGTATAGGTTCGTTG+TGG 0.619087 7_1:+58844952 Msa1026640:CDS
AAGCTTTGTTGGGAGCGTGA+AGG 0.622128 7_1:+58844820 Msa1026640:CDS
TTTGTTGTGAAAATACCAGA+GGG 0.624457 7_1:+58843999 Msa1026640:CDS
CAGGCATGAAGTGGTTGGTG+AGG 0.629500 7_1:+58843198 Msa1026640:intron
CACTGACGGAAAGATCACTC+AGG 0.632595 7_1:+58843372 Msa1026640:CDS
TTAAAACTATGCAGAAACAC+AGG 0.640578 7_1:+58842912 Msa1026640:intron
ACTATGCAGAAACACAGGAC+CGG 0.643408 7_1:+58842917 Msa1026640:intron
ATACAATATCATGAAGAGTG+TGG 0.644208 7_1:+58845027 Msa1026640:three_prime_UTR
GTCACACCTGCACACAACAA+TGG 0.650120 7_1:-58844044 None:intergenic
TGGGAGCGTGAAGGAGACAG+AGG 0.652158 7_1:+58844829 Msa1026640:CDS
ATGAAAGATAAGGCTCAAGA+GGG 0.658619 7_1:-58844334 None:intergenic
GATTGGAGAAGAATGATGTG+AGG 0.663743 7_1:+58844936 Msa1026640:CDS
GTTTGTTGTGAAAATACCAG+AGG 0.664399 7_1:+58843998 Msa1026640:CDS
AGTGGTTGGTGAGGTACTAG+AGG 0.677629 7_1:+58843207 Msa1026640:CDS
ACTGACGGAAAGATCACTCA+GGG 0.682017 7_1:+58843373 Msa1026640:CDS
TATGGAGTGAGAATTCCGGA+AGG 0.698628 7_1:-58842753 None:intergenic
ATGGAGTGAGAATTCCGGAA+GGG 0.705897 7_1:-58842752 None:intergenic
AAGAGCTTATCACAGTGACA+TGG 0.707377 7_1:-58844181 None:intergenic
AGGTGTAACAAATTGAAGAG+GGG 0.708980 7_1:-58844402 None:intergenic
GACGGAAAGATCACTCAGGG+TGG 0.713421 7_1:+58843376 Msa1026640:CDS
TGGTGGAGTAGGACACATGG+GGG 0.751756 7_1:+58844133 Msa1026640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATGTTTTTTTTTTTAAAT+GGG - chr7_1:58843531-58843550 None:intergenic 10.0%
!!! TCAATGTTTTTTTTTTTAAA+TGG - chr7_1:58843532-58843551 None:intergenic 10.0%
!! TAAAAGTAATTAATTTAGTT+GGG - chr7_1:58843881-58843900 None:intergenic 10.0%
!! ATAAAAGTAATTAATTTAGT+TGG - chr7_1:58843882-58843901 None:intergenic 10.0%
!! TAAAAATTACTAACAAATTT+AGG - chr7_1:58844556-58844575 None:intergenic 10.0%
!! ATATAATTAGAAAAATTAGA+AGG + chr7_1:58845208-58845227 Msa1026640:three_prime_UTR 10.0%
!!! ATGTTATGAAAAATGTTTTA+TGG + chr7_1:58843702-58843721 Msa1026640:intron 15.0%
!!! ATTAATTACTTTTATGAATC+TGG + chr7_1:58843887-58843906 Msa1026640:intron 15.0%
!!! CTTTTAAATAACTTGTAATT+AGG + chr7_1:58844604-58844623 Msa1026640:intron 15.0%
!!! TTATTTAAAAATCTAGTTCA+AGG + chr7_1:58844654-58844673 Msa1026640:intron 15.0%
!! AAAATATTTGATAAATCACT+TGG + chr7_1:58845587-58845606 Msa1026640:three_prime_UTR 15.0%
!! ATCTATCAAATTATTATGTC+CGG + chr7_1:58843074-58843093 Msa1026640:intron 20.0%
!!! TATGATTGTTTTGAAAAAAC+AGG + chr7_1:58843179-58843198 Msa1026640:intron 20.0%
!! AATTTAGATATGTTCAATTG+TGG + chr7_1:58843798-58843817 Msa1026640:intron 20.0%
!! TAGTTCACGTAAAAAAAATA+TGG - chr7_1:58843845-58843864 None:intergenic 20.0%
!!! TTTTAAACTGATTATGTGTT+TGG + chr7_1:58843960-58843979 Msa1026640:intron 20.0%
!! TTTAAACTGATTATGTGTTT+GGG + chr7_1:58843961-58843980 Msa1026640:intron 20.0%
!!! TTTTAGCTTAGTTATTGAAT+AGG + chr7_1:58844471-58844490 Msa1026640:intron 20.0%
!! TTAAAATCTTCAATAGTCAA+GGG - chr7_1:58844498-58844517 None:intergenic 20.0%
!!! TTTAAAATCTTCAATAGTCA+AGG - chr7_1:58844499-58844518 None:intergenic 20.0%
!!! CTTTAAGTTATTGAACAATT+TGG - chr7_1:58844696-58844715 None:intergenic 20.0%
!! TTAGAAGATATCATTACAAT+TGG - chr7_1:58844758-58844777 None:intergenic 20.0%
!! GAAACTAAAGCAATAATATT+TGG - chr7_1:58845429-58845448 None:intergenic 20.0%
!!! ATTTTGATGTAAACATCATC+CGG - chr7_1:58842939-58842958 None:intergenic 25.0%
! TACATCAAAATTCATTACTG+TGG + chr7_1:58842948-58842967 Msa1026640:CDS 25.0%
! CCTTAAAATTAATCGAAACA+CGG - chr7_1:58843116-58843135 None:intergenic 25.0%
!!! TTATTACTTTTGTTCAACGA+CGG - chr7_1:58843416-58843435 None:intergenic 25.0%
! TAACAGGTGTGAAAAAAATT+GGG - chr7_1:58843731-58843750 None:intergenic 25.0%
! TTAACAGGTGTGAAAAAAAT+TGG - chr7_1:58843732-58843751 None:intergenic 25.0%
!! TTTTATGAATCTGGTGTAAA+AGG + chr7_1:58843896-58843915 Msa1026640:intron 25.0%
! TTAAACTGATTATGTGTTTG+GGG + chr7_1:58843962-58843981 Msa1026640:intron 25.0%
!! ATTTTGAGCAATGAAAGATA+AGG - chr7_1:58844347-58844366 None:intergenic 25.0%
! TTTCATTGCTCAAAATTGAT+GGG + chr7_1:58844351-58844370 Msa1026640:CDS 25.0%
! AAAATCATTGATGAGAAAGA+AGG - chr7_1:58844454-58844473 None:intergenic 25.0%
! TGTAATTAGGTCTTGAATTT+AGG + chr7_1:58844617-58844636 Msa1026640:intron 25.0%
! GTAATTAGGTCTTGAATTTA+GGG + chr7_1:58844618-58844637 Msa1026640:intron 25.0%
! CATAGTTACAATTTCAATCA+TGG - chr7_1:58844891-58844910 None:intergenic 25.0%
! CATGATTGAAATTGTAACTA+TGG + chr7_1:58844889-58844908 Msa1026640:CDS 25.0%
!!! TAACAAAGCTTTTGAAAGAT+TGG + chr7_1:58844919-58844938 Msa1026640:CDS 25.0%
! TTGTTGTGTTTGTATAATTG+AGG + chr7_1:58845067-58845086 Msa1026640:three_prime_UTR 25.0%
! TAGAAGGAAAGAAAAACAAA+AGG + chr7_1:58845224-58845243 Msa1026640:three_prime_UTR 25.0%
! AGAAAAACAAAAGGATATGT+TGG + chr7_1:58845233-58845252 Msa1026640:three_prime_UTR 25.0%
! GAAAAACAAAAGGATATGTT+GGG + chr7_1:58845234-58845253 Msa1026640:three_prime_UTR 25.0%
!! CTTACCTAATATTTGAAACT+GGG + chr7_1:58845364-58845383 Msa1026640:three_prime_UTR 25.0%
! AAGCAATAATATTTGGCATT+TGG - chr7_1:58845422-58845441 None:intergenic 25.0%
!!! TTTGTTTTCATGATTGCTTA+GGG + chr7_1:58845455-58845474 Msa1026640:three_prime_UTR 25.0%
! TCTCTTCATTCATTCACTTT+TGG + chr7_1:58842650-58842669 Msa1026640:five_prime_UTR 30.0%
TTAAAACTATGCAGAAACAC+AGG + chr7_1:58842912-58842931 Msa1026640:intron 30.0%
CACCAAATCAAAAATGATCT+TGG + chr7_1:58842990-58843009 Msa1026640:CDS 30.0%
!! TGCCAAGATCATTTTTGATT+TGG - chr7_1:58842995-58843014 None:intergenic 30.0%
! CCGTGTTTCGATTAATTTTA+AGG + chr7_1:58843113-58843132 Msa1026640:intron 30.0%
AAATGTTACAAGGTTCAAAG+TGG + chr7_1:58843237-58843256 Msa1026640:CDS 30.0%
AATGTTACAAGGTTCAAAGT+GGG + chr7_1:58843238-58843257 Msa1026640:CDS 30.0%
TACAATGATGTTTACACTGA+CGG + chr7_1:58843358-58843377 Msa1026640:CDS 30.0%
!! GTGTGGAATTTAATTTGACA+CGG - chr7_1:58843487-58843506 None:intergenic 30.0%
CAAGTTTGTATGTGATTAAC+AGG - chr7_1:58843747-58843766 None:intergenic 30.0%
! TTTGTTGTGAAAATACCAGA+GGG + chr7_1:58843999-58844018 Msa1026640:CDS 30.0%
TTCTGATAAGAAGAAGAAAG+AGG + chr7_1:58844202-58844221 Msa1026640:CDS 30.0%
CTTTCATTGCTCAAAATTGA+TGG + chr7_1:58844350-58844369 Msa1026640:CDS 30.0%
TAGGTGTAACAAATTGAAGA+GGG - chr7_1:58844406-58844425 None:intergenic 30.0%
ATAGGTGTAACAAATTGAAG+AGG - chr7_1:58844407-58844426 None:intergenic 30.0%
!! TCTTCAATTTGTTACACCTA+TGG + chr7_1:58844406-58844425 Msa1026640:CDS 30.0%
TGTCAAAGGAAGTAAATTTG+AGG + chr7_1:58844976-58844995 Msa1026640:CDS 30.0%
AAGTAAATTTGAGGAGTGAA+AGG + chr7_1:58844985-58845004 Msa1026640:exon 30.0%
AGTAAATTTGAGGAGTGAAA+GGG + chr7_1:58844986-58845005 Msa1026640:exon 30.0%
ATACAATATCATGAAGAGTG+TGG + chr7_1:58845027-58845046 Msa1026640:three_prime_UTR 30.0%
! TTTCTCTCTTTTCTATGCTA+TGG + chr7_1:58845092-58845111 Msa1026640:three_prime_UTR 30.0%
AGGTAAAGATTTGTCAAAGT+AGG - chr7_1:58845343-58845362 None:intergenic 30.0%
GTTTCAAATATTAGGTAAGC+AGG - chr7_1:58845363-58845382 None:intergenic 30.0%
! GCTTACCTAATATTTGAAAC+TGG + chr7_1:58845363-58845382 Msa1026640:three_prime_UTR 30.0%
ATGTCCCAGTTTCAAATATT+AGG - chr7_1:58845371-58845390 None:intergenic 30.0%
!!! CTTTGTTTTCATGATTGCTT+AGG + chr7_1:58845454-58845473 Msa1026640:three_prime_UTR 30.0%
ACCAGAGAACACAAAAACAT+GGG + chr7_1:58842681-58842700 Msa1026640:exon 35.0%
AGAAAGAACAACAGTAGGAT+TGG + chr7_1:58842719-58842738 Msa1026640:CDS 35.0%
AGAAGTTAACATACATACCC+AGG - chr7_1:58843038-58843057 None:intergenic 35.0%
TTATTATGTCCGGTGTTTGT+TGG + chr7_1:58843084-58843103 Msa1026640:intron 35.0%
TTGAAAAAACAGGCATGAAG+TGG + chr7_1:58843189-58843208 Msa1026640:intron 35.0%
TTCAAAGTGGGAGAAATTGT+GGG + chr7_1:58843250-58843269 Msa1026640:CDS 35.0%
AATACTGCAACAAGAAGATC+TGG + chr7_1:58843332-58843351 Msa1026640:CDS 35.0%
TCAGAAATGCATAAAACGTG+TGG - chr7_1:58843504-58843523 None:intergenic 35.0%
!! GTTTGTTGTGAAAATACCAG+AGG + chr7_1:58843998-58844017 Msa1026640:CDS 35.0%
! TACAGTCCACTTTCACATTT+TGG + chr7_1:58844071-58844090 Msa1026640:CDS 35.0%
! ACAGTCCACTTTCACATTTT+GGG + chr7_1:58844072-58844091 Msa1026640:CDS 35.0%
TTGTTAGCTCAGATACTGTT+GGG + chr7_1:58844255-58844274 Msa1026640:CDS 35.0%
ATGAAAGATAAGGCTCAAGA+GGG - chr7_1:58844337-58844356 None:intergenic 35.0%
AATGAAAGATAAGGCTCAAG+AGG - chr7_1:58844338-58844357 None:intergenic 35.0%
TGATGGGAAATTGATCTTGA+TGG + chr7_1:58844367-58844386 Msa1026640:CDS 35.0%
GATGGGAAATTGATCTTGAT+GGG + chr7_1:58844368-58844387 Msa1026640:CDS 35.0%
AGGTGTAACAAATTGAAGAG+GGG - chr7_1:58844405-58844424 None:intergenic 35.0%
ATCATTGATGAGAAAGAAGG+AGG - chr7_1:58844451-58844470 None:intergenic 35.0%
TATTGATGTTGTGTTGCGTA+GGG + chr7_1:58844780-58844799 Msa1026640:intron 35.0%
! TCAATTACTGGAAGCTTTGT+TGG + chr7_1:58844809-58844828 Msa1026640:CDS 35.0%
!! CAATTACTGGAAGCTTTGTT+GGG + chr7_1:58844810-58844829 Msa1026640:CDS 35.0%
!!! TTGGAGTTTTGGAAAGAGAA+GGG + chr7_1:58844857-58844876 Msa1026640:CDS 35.0%
AGAAGAATGATGTGAGGTAT+AGG + chr7_1:58844942-58844961 Msa1026640:CDS 35.0%
CTGTGCGTAAAAAACTAAAG+AGG - chr7_1:58845628-58845647 None:intergenic 35.0%
!!! CTCTTTAGTTTTTTACGCAC+AGG + chr7_1:58845626-58845645 Msa1026640:three_prime_UTR 35.0%
AAAACAGTGCAAACGTGAGT+GGG - chr7_1:58842625-58842644 None:intergenic 40.0%
GACCAGAGAACACAAAAACA+TGG + chr7_1:58842680-58842699 Msa1026640:exon 40.0%
!! ACCCATGTTTTTGTGTTCTC+TGG - chr7_1:58842685-58842704 None:intergenic 40.0%
TGTGTATGGAGTGAGAATTC+CGG - chr7_1:58842760-58842779 None:intergenic 40.0%
TGGCATGTCCAATTATCCTA+TGG + chr7_1:58843010-58843029 Msa1026640:CDS 40.0%
TCCAATTATCCTATGGTTCC+TGG + chr7_1:58843017-58843036 Msa1026640:CDS 40.0%
CCAATTATCCTATGGTTCCT+GGG + chr7_1:58843018-58843037 Msa1026640:CDS 40.0%
AAAAACAGGCATGAAGTGGT+TGG + chr7_1:58843193-58843212 Msa1026640:intron 40.0%
! AGGTGGGTTCAAATGTTACA+AGG + chr7_1:58843227-58843246 Msa1026640:CDS 40.0%
GTTCAAAGTGGGAGAAATTG+TGG + chr7_1:58843249-58843268 Msa1026640:CDS 40.0%
!! TTACTTTTGTTCAACGACGG+TGG - chr7_1:58843413-58843432 None:intergenic 40.0%
TGTTTGGGGATATTACTGTC+AGG + chr7_1:58843976-58843995 Msa1026640:intron 40.0%
TGTGAAAATACCAGAGGGAT+TGG + chr7_1:58844004-58844023 Msa1026640:CDS 40.0%
TTCAGCCCAAAATGTGAAAG+TGG - chr7_1:58844080-58844099 None:intergenic 40.0%
! ATTTTGGGCTGAAAACACCT+GGG + chr7_1:58844087-58844106 Msa1026640:CDS 40.0%
!! GTGAAAGTAGCAAAGGCATT+AGG + chr7_1:58844155-58844174 Msa1026640:CDS 40.0%
AAGAGCTTATCACAGTGACA+TGG - chr7_1:58844184-58844203 None:intergenic 40.0%
CTTGTTAGCTCAGATACTGT+TGG + chr7_1:58844254-58844273 Msa1026640:CDS 40.0%
ATCATTGACACTGTTCCTGT+TGG + chr7_1:58844308-58844327 Msa1026640:CDS 40.0%
! GTTTTACCTAGCATGACCAT+AGG - chr7_1:58844425-58844444 None:intergenic 40.0%
TTGATGAGAAAGAAGGAGGT+GGG - chr7_1:58844447-58844466 None:intergenic 40.0%
ATTGATGAGAAAGAAGGAGG+TGG - chr7_1:58844448-58844467 None:intergenic 40.0%
CTATTGATGTTGTGTTGCGT+AGG + chr7_1:58844779-58844798 Msa1026640:intron 40.0%
!!! GTTGGAGTTTTGGAAAGAGA+AGG + chr7_1:58844856-58844875 Msa1026640:CDS 40.0%
GATTGGAGAAGAATGATGTG+AGG + chr7_1:58844936-58844955 Msa1026640:CDS 40.0%
ACTCTCGTTCTCAAAAGAGT+TGG - chr7_1:58845268-58845287 None:intergenic 40.0%
! AGTCGTGTTTGCTTTGCTTT+TGG + chr7_1:58845285-58845304 Msa1026640:three_prime_UTR 40.0%
!! TTTGCTTTTGGTCGTGTTGA+TGG + chr7_1:58845297-58845316 Msa1026640:three_prime_UTR 40.0%
CATGATTGCTTAGGGAATGA+AGG + chr7_1:58845463-58845482 Msa1026640:three_prime_UTR 40.0%
!! TAGGGAATGAAGGTATTGCA+TGG + chr7_1:58845473-58845492 Msa1026640:three_prime_UTR 40.0%
!! AGGGAATGAAGGTATTGCAT+GGG + chr7_1:58845474-58845493 Msa1026640:three_prime_UTR 40.0%
TCCGTCCTATGTTATTCCAA+CGG + chr7_1:58845504-58845523 Msa1026640:three_prime_UTR 40.0%
AAGTCCCGTTGGAATAACAT+AGG - chr7_1:58845512-58845531 None:intergenic 40.0%
GTGAGTATAATAAGTCCCGT+TGG - chr7_1:58845523-58845542 None:intergenic 40.0%
GAAAACAGTGCAAACGTGAG+TGG - chr7_1:58842626-58842645 None:intergenic 45.0%
GCTGCAGAAAGAACAACAGT+AGG + chr7_1:58842714-58842733 Msa1026640:CDS 45.0%
ATGGAGTGAGAATTCCGGAA+GGG - chr7_1:58842755-58842774 None:intergenic 45.0%
TATGGAGTGAGAATTCCGGA+AGG - chr7_1:58842756-58842775 None:intergenic 45.0%
CTCCATACACATACACTCTC+AGG + chr7_1:58842769-58842788 Msa1026640:CDS 45.0%
! CACCTGAGAGTGTATGTGTA+TGG - chr7_1:58842774-58842793 None:intergenic 45.0%
ACTATGCAGAAACACAGGAC+CGG + chr7_1:58842917-58842936 Msa1026640:intron 45.0%
CCCAGGAACCATAGGATAAT+TGG - chr7_1:58843021-58843040 None:intergenic 45.0%
CATACATACCCAGGAACCAT+AGG - chr7_1:58843029-58843048 None:intergenic 45.0%
CGGACATATCCAACAAACAC+CGG - chr7_1:58843096-58843115 None:intergenic 45.0%
ACTGACGGAAAGATCACTCA+GGG + chr7_1:58843373-58843392 Msa1026640:CDS 45.0%
! AACAATGGTGCAACTTGCTC+TGG - chr7_1:58844032-58844051 None:intergenic 45.0%
! CATTTTGGGCTGAAAACACC+TGG + chr7_1:58844086-58844105 Msa1026640:CDS 45.0%
AATATTCCACCTCTTAGCCC+AGG - chr7_1:58844107-58844126 None:intergenic 45.0%
TGGGCTAAGAGGTGGAATAT+TGG + chr7_1:58844106-58844125 Msa1026640:CDS 45.0%
GGGCTAAGAGGTGGAATATT+GGG + chr7_1:58844107-58844126 Msa1026640:CDS 45.0%
AGAGGTGGAATATTGGGTCT+TGG + chr7_1:58844113-58844132 Msa1026640:CDS 45.0%
ATATTGGGTCTTGGTGGAGT+AGG + chr7_1:58844122-58844141 Msa1026640:CDS 45.0%
!! GAAGAAGAAAGAGGCACTTG+AGG + chr7_1:58844211-58844230 Msa1026640:CDS 45.0%
!! AAAGAGGCACTTGAGGATCT+TGG + chr7_1:58844218-58844237 Msa1026640:CDS 45.0%
GTTACACCTATGGTCATGCT+AGG + chr7_1:58844416-58844435 Msa1026640:CDS 45.0%
GTAGGGAGGAAGTCAATTAC+TGG + chr7_1:58844797-58844816 Msa1026640:intron 45.0%
! CAGAGGAGATGTTGGAGTTT+TGG + chr7_1:58844846-58844865 Msa1026640:CDS 45.0%
TGTGAGGTATAGGTTCGTTG+TGG + chr7_1:58844952-58844971 Msa1026640:CDS 45.0%
AGGTTCGTTGTGGATGTCAA+AGG + chr7_1:58844962-58844981 Msa1026640:CDS 45.0%
TGGCATTTGGCATACGTGTA+TGG - chr7_1:58845409-58845428 None:intergenic 45.0%
CCCGTTGGAATAACATAGGA+CGG - chr7_1:58845508-58845527 None:intergenic 45.0%
CCGTCCTATGTTATTCCAAC+GGG + chr7_1:58845505-58845524 Msa1026640:three_prime_UTR 45.0%
!!! TTAAACTTTTTTTTTTAATT+TGG + chr7_1:58844573-58844592 Msa1026640:intron 5.0%
!!! TTTTTAAATAATTTATGTTT+AGG - chr7_1:58844645-58844664 None:intergenic 5.0%
!! CGTGAGTGGGATTGGTTAGT+GGG - chr7_1:58842612-58842631 None:intergenic 50.0%
!! ACGTGAGTGGGATTGGTTAG+TGG - chr7_1:58842613-58842632 None:intergenic 50.0%
AGTGCAAACGTGAGTGGGAT+TGG - chr7_1:58842620-58842639 None:intergenic 50.0%
TTGGCTGCAAAAGACCCTTC+CGG + chr7_1:58842738-58842757 Msa1026640:CDS 50.0%
!! AGTGGTTGGTGAGGTACTAG+AGG + chr7_1:58843207-58843226 Msa1026640:CDS 50.0%
! GTTGGTGAGGTACTAGAGGT+GGG + chr7_1:58843211-58843230 Msa1026640:CDS 50.0%
GTGGGAGAAATTGTGGGAGT+TGG + chr7_1:58843256-58843275 Msa1026640:CDS 50.0%
CACTGACGGAAAGATCACTC+AGG + chr7_1:58843372-58843391 Msa1026640:CDS 50.0%
GTTGCACCATTGTTGTGTGC+AGG + chr7_1:58844038-58844057 Msa1026640:CDS 50.0%
GTCACACCTGCACACAACAA+TGG - chr7_1:58844047-58844066 None:intergenic 50.0%
CTGAAAACACCTGGGCTAAG+AGG + chr7_1:58844095-58844114 Msa1026640:CDS 50.0%
AAAACACCTGGGCTAAGAGG+TGG + chr7_1:58844098-58844117 Msa1026640:CDS 50.0%
GGTGGAATATTGGGTCTTGG+TGG + chr7_1:58844116-58844135 Msa1026640:CDS 50.0%
TCTTGGTGGAGTAGGACACA+TGG + chr7_1:58844130-58844149 Msa1026640:CDS 50.0%
CTTGGTGGAGTAGGACACAT+GGG + chr7_1:58844131-58844150 Msa1026640:CDS 50.0%
TTGGTGGAGTAGGACACATG+GGG + chr7_1:58844132-58844151 Msa1026640:CDS 50.0%
CATGGGGGTGAAAGTAGCAA+AGG + chr7_1:58844148-58844167 Msa1026640:CDS 50.0%
TGATGTTGTGTTGCGTAGGG+AGG + chr7_1:58844783-58844802 Msa1026640:intron 50.0%
!! AAGCTTTGTTGGGAGCGTGA+AGG + chr7_1:58844820-58844839 Msa1026640:CDS 50.0%
GAAGGAGACAGAGGAGATGT+TGG + chr7_1:58844838-58844857 Msa1026640:CDS 50.0%
! CAGGCATGAAGTGGTTGGTG+AGG + chr7_1:58843198-58843217 Msa1026640:intron 55.0%
!! GGTTGGTGAGGTACTAGAGG+TGG + chr7_1:58843210-58843229 Msa1026640:CDS 55.0%
!! GTGGGAGTTGGTCTTCTCGT+TGG + chr7_1:58843268-58843287 Msa1026640:CDS 55.0%
GACGGAAAGATCACTCAGGG+TGG + chr7_1:58843376-58843395 Msa1026640:CDS 55.0%
TGGTGGAGTAGGACACATGG+GGG + chr7_1:58844133-58844152 Msa1026640:CDS 55.0%
! TGCTCTGGTGCCAATCCCTC+TGG - chr7_1:58844017-58844036 None:intergenic 60.0%
GGCTCAAGAGGGTGACCAAC+AGG - chr7_1:58844326-58844345 None:intergenic 60.0%
! TGGGAGCGTGAAGGAGACAG+AGG + chr7_1:58844829-58844848 Msa1026640:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 58842609 58845700 58842609 ID=Msa1026640;Name=Msa1026640
chr7_1 mRNA 58842609 58845700 58842609 ID=Msa1026640-mRNA-1;Parent=Msa1026640;Name=Msa1026640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|1|1|1|1|1|5|697|358
chr7_1 exon 58842609 58842790 58842609 ID=Msa1026640-mRNA-1:exon:11727;Parent=Msa1026640-mRNA-1
chr7_1 exon 58842926 58843039 58842926 ID=Msa1026640-mRNA-1:exon:11728;Parent=Msa1026640-mRNA-1
chr7_1 exon 58843201 58843428 58843201 ID=Msa1026640-mRNA-1:exon:11729;Parent=Msa1026640-mRNA-1
chr7_1 exon 58843998 58844437 58843998 ID=Msa1026640-mRNA-1:exon:11730;Parent=Msa1026640-mRNA-1
chr7_1 exon 58844801 58845700 58844801 ID=Msa1026640-mRNA-1:exon:11731;Parent=Msa1026640-mRNA-1
chr7_1 five_prime_UTR 58842609 58842698 58842609 ID=Msa1026640-mRNA-1:five_prime_utr;Parent=Msa1026640-mRNA-1
chr7_1 CDS 58842699 58842790 58842699 ID=Msa1026640-mRNA-1:cds;Parent=Msa1026640-mRNA-1
chr7_1 CDS 58842926 58843039 58842926 ID=Msa1026640-mRNA-1:cds;Parent=Msa1026640-mRNA-1
chr7_1 CDS 58843201 58843428 58843201 ID=Msa1026640-mRNA-1:cds;Parent=Msa1026640-mRNA-1
chr7_1 CDS 58843998 58844437 58843998 ID=Msa1026640-mRNA-1:cds;Parent=Msa1026640-mRNA-1
chr7_1 CDS 58844801 58845003 58844801 ID=Msa1026640-mRNA-1:cds;Parent=Msa1026640-mRNA-1
chr7_1 three_prime_UTR 58845004 58845700 58845004 ID=Msa1026640-mRNA-1:three_prime_utr;Parent=Msa1026640-mRNA-1
Gene Sequence

>Msa1026640

ATGGGTAGCATTGAAGCTGCAGAAAGAACAACAGTAGGATTGGCTGCAAAAGACCCTTCCGGAATTCTCACTCCATACACATACACTCTCAGAAACACAGGACCGGATGATGTTTACATCAAAATTCATTACTGTGGAGTCTGTCATTCTGATCTTCACCAAATCAAAAATGATCTTGGCATGTCCAATTATCCTATGGTTCCTGGGCATGAAGTGGTTGGTGAGGTACTAGAGGTGGGTTCAAATGTTACAAGGTTCAAAGTGGGAGAAATTGTGGGAGTTGGTCTTCTCGTTGGTTGCTGCAAAAGCTGCAGAGCATGTGATTCTGAGATTGAGCAATACTGCAACAAGAAGATCTGGTCTTACAATGATGTTTACACTGACGGAAAGATCACTCAGGGTGGCTTTGCTGAATCCACCGTCGTTGAACAAAAGTTTGTTGTGAAAATACCAGAGGGATTGGCACCAGAGCAAGTTGCACCATTGTTGTGTGCAGGTGTGACTGTGTACAGTCCACTTTCACATTTTGGGCTGAAAACACCTGGGCTAAGAGGTGGAATATTGGGTCTTGGTGGAGTAGGACACATGGGGGTGAAAGTAGCAAAGGCATTAGGTCACCATGTCACTGTGATAAGCTCTTCTGATAAGAAGAAGAAAGAGGCACTTGAGGATCTTGGAGCTGACAATTATCTTGTTAGCTCAGATACTGTTGGGATGCAAGAAGCTGCTGATTCACTTGATTATATCATTGACACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTTCATTGCTCAAAATTGATGGGAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACACCTATGGTCATGCTAGGGAGGAAGTCAATTACTGGAAGCTTTGTTGGGAGCGTGAAGGAGACAGAGGAGATGTTGGAGTTTTGGAAAGAGAAGGGTCTAACTTCCATGATTGAAATTGTAACTATGGATTACATTAACAAAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTCGTTGTGGATGTCAAAGGAAGTAAATTTGAGGAGTGA

Protein sequence

>Msa1026640

MGSIEAAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKFEE*