Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593240 | XP_013447002.1 | 89.205 | 176 | 16 | 1 | 85 | 260 | 1 | 173 | 1.87e-107 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593240 | sp|P31110|TLP_ORYSJ | 61.635 | 159 | 55 | 3 | 103 | 260 | 24 | 177 | 1.18e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0232860 | Msa0593240 | 0.817703 | 2.874216e-52 | -8.615850e-47 |
| Msa0593240 | Msa0593250 | 0.946820 | 2.219716e-105 | -8.615850e-47 |
| Msa0593240 | Msa0593260 | 0.935480 | 7.934737e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593240 | MtrunA17_Chr8g0386351 | 77.889 | 199 | 38 | 3 | 67 | 260 | 21 | 218 | 1.75e-110 | 317 |
| Msa0593240 | MtrunA17_Chr8g0386341 | 46.930 | 228 | 73 | 4 | 80 | 260 | 22 | 248 | 1.21e-61 | 194 |
| Msa0593240 | MtrunA17_Chr5g0397821 | 44.175 | 206 | 66 | 3 | 103 | 260 | 21 | 225 | 5.94e-48 | 159 |
| Msa0593240 | MtrunA17_Chr5g0397831 | 50.000 | 162 | 74 | 3 | 85 | 240 | 1 | 161 | 7.55e-46 | 153 |
| Msa0593240 | MtrunA17_Chr8g0386361 | 47.159 | 176 | 35 | 4 | 85 | 260 | 1 | 118 | 1.66e-38 | 130 |
| Msa0593240 | MtrunA17_Chr2g0311531 | 41.206 | 199 | 72 | 7 | 105 | 260 | 26 | 222 | 4.88e-35 | 125 |
| Msa0593240 | MtrunA17_Chr5g0424221 | 45.588 | 136 | 61 | 5 | 85 | 215 | 11 | 138 | 1.22e-27 | 107 |
| Msa0593240 | MtrunA17_Chr4g0037331 | 41.420 | 169 | 75 | 9 | 85 | 234 | 1 | 164 | 1.75e-27 | 108 |
| Msa0593240 | MtrunA17_Chr5g0428801 | 46.377 | 138 | 62 | 5 | 87 | 213 | 4 | 140 | 1.81e-27 | 107 |
| Msa0593240 | MtrunA17_Chr6g0482741 | 37.857 | 140 | 76 | 4 | 85 | 216 | 1 | 137 | 1.93e-27 | 105 |
| Msa0593240 | MtrunA17_Chr5g0405611 | 32.463 | 268 | 108 | 13 | 62 | 260 | 45 | 308 | 7.19e-27 | 107 |
| Msa0593240 | MtrunA17_Chr7g0239131 | 39.623 | 159 | 81 | 6 | 85 | 233 | 1 | 154 | 1.84e-26 | 103 |
| Msa0593240 | MtrunA17_Chr8g0392961 | 44.348 | 115 | 53 | 4 | 110 | 216 | 31 | 142 | 3.14e-26 | 102 |
| Msa0593240 | MtrunA17_Chr1g0154591 | 47.200 | 125 | 56 | 3 | 103 | 218 | 10 | 133 | 6.43e-26 | 101 |
| Msa0593240 | MtrunA17_Chr2g0311521 | 34.800 | 250 | 86 | 12 | 83 | 260 | 3 | 247 | 4.25e-25 | 104 |
| Msa0593240 | MtrunA17_Chr8g0371771 | 38.690 | 168 | 84 | 9 | 80 | 234 | 6 | 167 | 9.46e-25 | 100 |
| Msa0593240 | MtrunA17_Chr4g0037351 | 42.000 | 150 | 73 | 7 | 87 | 223 | 5 | 153 | 1.48e-24 | 100 |
| Msa0593240 | MtrunA17_Chr3g0141341 | 41.892 | 148 | 65 | 6 | 103 | 234 | 9 | 151 | 2.15e-24 | 97.8 |
| Msa0593240 | MtrunA17_Chr8g0352471 | 39.860 | 143 | 75 | 5 | 82 | 215 | 3 | 143 | 5.16e-24 | 98.6 |
| Msa0593240 | MtrunA17_Chr8g0351851 | 37.791 | 172 | 85 | 8 | 85 | 241 | 1 | 165 | 1.11e-23 | 95.9 |
| Msa0593240 | MtrunA17_Chr1g0156711 | 39.241 | 158 | 78 | 5 | 87 | 227 | 4 | 160 | 3.28e-23 | 96.3 |
| Msa0593240 | MtrunA17_Chr8g0371781 | 45.000 | 120 | 56 | 4 | 105 | 215 | 27 | 145 | 4.67e-23 | 95.5 |
| Msa0593240 | MtrunA17_Chr5g0405581 | 36.257 | 171 | 86 | 7 | 82 | 234 | 3 | 168 | 6.34e-23 | 95.1 |
| Msa0593240 | MtrunA17_Chr8g0357311 | 39.855 | 138 | 72 | 5 | 88 | 215 | 7 | 143 | 3.40e-22 | 92.4 |
| Msa0593240 | MtrunA17_Chr2g0312181 | 31.557 | 244 | 98 | 8 | 85 | 260 | 1 | 243 | 6.36e-22 | 91.3 |
| Msa0593240 | MtrunA17_Chr3g0112091 | 40.876 | 137 | 66 | 7 | 107 | 233 | 18 | 149 | 7.48e-22 | 90.9 |
| Msa0593240 | MtrunA17_Chr3g0142781 | 40.141 | 142 | 71 | 6 | 85 | 213 | 1 | 141 | 1.24e-21 | 92.0 |
| Msa0593240 | MtrunA17_Chr7g0265011 | 33.333 | 186 | 102 | 9 | 64 | 234 | 20 | 198 | 1.46e-21 | 91.3 |
| Msa0593240 | MtrunA17_Chr2g0311551 | 33.778 | 225 | 78 | 10 | 105 | 260 | 22 | 244 | 1.28e-20 | 91.3 |
| Msa0593240 | MtrunA17_Chr1g0180161 | 35.714 | 154 | 87 | 7 | 85 | 228 | 1 | 152 | 1.33e-20 | 88.2 |
| Msa0593240 | MtrunA17_Chr2g0311561 | 37.126 | 167 | 83 | 7 | 103 | 251 | 8 | 170 | 3.47e-20 | 87.4 |
| Msa0593240 | MtrunA17_Chr1g0180231 | 32.973 | 185 | 91 | 7 | 85 | 260 | 1 | 161 | 5.45e-20 | 86.3 |
| Msa0593240 | MtrunA17_Chr1g0179871 | 32.973 | 185 | 91 | 7 | 85 | 260 | 1 | 161 | 5.45e-20 | 86.3 |
| Msa0593240 | MtrunA17_Chr6g0452331 | 37.681 | 138 | 75 | 5 | 100 | 227 | 23 | 159 | 1.03e-19 | 85.9 |
| Msa0593240 | MtrunA17_Chr1g0180121 | 33.962 | 159 | 90 | 6 | 85 | 234 | 1 | 153 | 1.15e-19 | 85.1 |
| Msa0593240 | MtrunA17_Chr4g0031221 | 36.641 | 131 | 73 | 4 | 95 | 216 | 18 | 147 | 2.15e-19 | 84.7 |
| Msa0593240 | MtrunA17_Chr1g0180221 | 31.731 | 208 | 101 | 9 | 63 | 260 | 25 | 201 | 8.70e-19 | 83.6 |
| Msa0593240 | MtrunA17_Chr1g0179891 | 32.778 | 180 | 88 | 7 | 90 | 260 | 1 | 156 | 9.78e-19 | 82.8 |
| Msa0593240 | MtrunA17_Chr5g0406771 | 36.567 | 134 | 75 | 4 | 96 | 219 | 3 | 136 | 5.05e-18 | 79.3 |
| Msa0593240 | MtrunA17_Chr1g0179851 | 36.232 | 138 | 76 | 6 | 87 | 215 | 1 | 135 | 1.30e-17 | 79.7 |
| Msa0593240 | MtrunA17_Chr2g0311501 | 43.011 | 93 | 48 | 5 | 145 | 234 | 5 | 95 | 2.62e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593240 | AT4G11650.1 | 45.089 | 224 | 74 | 4 | 85 | 260 | 1 | 223 | 2.96e-54 | 176 |
| Msa0593240 | AT1G77700.3 | 47.368 | 133 | 62 | 3 | 88 | 216 | 43 | 171 | 6.39e-33 | 122 |
| Msa0593240 | AT1G77700.2 | 47.368 | 133 | 62 | 3 | 88 | 216 | 43 | 171 | 1.03e-32 | 122 |
| Msa0593240 | AT1G77700.1 | 51.261 | 119 | 50 | 3 | 102 | 216 | 85 | 199 | 1.04e-32 | 122 |
| Msa0593240 | AT1G75050.1 | 46.324 | 136 | 66 | 2 | 86 | 215 | 5 | 139 | 6.39e-30 | 112 |
| Msa0593240 | AT1G75030.1 | 44.286 | 140 | 69 | 4 | 83 | 215 | 2 | 139 | 4.17e-28 | 108 |
| Msa0593240 | AT4G36010.1 | 50.847 | 118 | 47 | 5 | 108 | 215 | 25 | 141 | 1.35e-25 | 102 |
| Msa0593240 | AT4G36010.2 | 50.847 | 118 | 47 | 5 | 108 | 215 | 25 | 141 | 1.35e-25 | 102 |
| Msa0593240 | AT1G18250.1 | 45.455 | 121 | 55 | 4 | 103 | 215 | 18 | 135 | 1.53e-25 | 101 |
| Msa0593240 | AT1G73620.1 | 44.628 | 121 | 56 | 4 | 103 | 215 | 39 | 156 | 2.01e-25 | 101 |
| Msa0593240 | AT4G38660.1 | 37.805 | 164 | 84 | 5 | 80 | 227 | 4 | 165 | 3.26e-25 | 102 |
| Msa0593240 | AT1G18250.2 | 44.262 | 122 | 57 | 4 | 102 | 215 | 18 | 136 | 3.73e-25 | 100 |
| Msa0593240 | AT1G75040.1 | 41.818 | 165 | 75 | 7 | 85 | 235 | 4 | 161 | 5.48e-25 | 99.8 |
| Msa0593240 | AT4G38660.2 | 41.667 | 144 | 66 | 5 | 100 | 227 | 2 | 143 | 7.27e-25 | 101 |
| Msa0593240 | AT1G75800.1 | 38.994 | 159 | 83 | 6 | 85 | 233 | 1 | 155 | 1.03e-24 | 100 |
| Msa0593240 | AT5G24620.4 | 36.585 | 164 | 94 | 4 | 67 | 221 | 41 | 203 | 2.26e-24 | 101 |
| Msa0593240 | AT5G24620.3 | 36.585 | 164 | 94 | 4 | 67 | 221 | 62 | 224 | 2.59e-24 | 101 |
| Msa0593240 | AT2G17860.1 | 42.958 | 142 | 69 | 6 | 85 | 215 | 1 | 141 | 1.53e-23 | 96.3 |
| Msa0593240 | AT5G24620.1 | 37.415 | 147 | 82 | 4 | 84 | 221 | 3 | 148 | 1.60e-23 | 99.0 |
| Msa0593240 | AT4G38670.3 | 42.254 | 142 | 69 | 6 | 85 | 215 | 2 | 141 | 6.99e-23 | 95.1 |
| Msa0593240 | AT4G38670.1 | 42.254 | 142 | 69 | 6 | 85 | 215 | 2 | 141 | 6.99e-23 | 95.1 |
| Msa0593240 | AT1G19320.1 | 39.716 | 141 | 71 | 6 | 87 | 216 | 9 | 146 | 1.34e-22 | 93.6 |
| Msa0593240 | AT2G28790.2 | 35.795 | 176 | 91 | 9 | 80 | 234 | 19 | 193 | 7.44e-22 | 92.0 |
| Msa0593240 | AT5G38280.1 | 40.146 | 137 | 68 | 6 | 90 | 213 | 5 | 140 | 1.04e-21 | 94.7 |
| Msa0593240 | AT5G38280.2 | 40.146 | 137 | 68 | 6 | 90 | 213 | 5 | 140 | 1.12e-21 | 94.4 |
| Msa0593240 | AT5G40020.1 | 32.778 | 180 | 95 | 8 | 85 | 242 | 1 | 176 | 1.23e-21 | 91.3 |
| Msa0593240 | AT4G38670.2 | 44.094 | 127 | 58 | 6 | 100 | 215 | 1 | 125 | 1.74e-21 | 90.9 |
| Msa0593240 | AT4G24180.6 | 36.538 | 156 | 82 | 7 | 79 | 218 | 5 | 159 | 1.98e-21 | 90.9 |
| Msa0593240 | AT5G02140.1 | 34.302 | 172 | 98 | 6 | 91 | 248 | 6 | 176 | 2.36e-21 | 91.3 |
| Msa0593240 | AT5G02140.2 | 34.302 | 172 | 98 | 6 | 91 | 248 | 6 | 176 | 2.82e-21 | 90.1 |
| Msa0593240 | AT4G24180.3 | 36.538 | 156 | 82 | 7 | 79 | 218 | 5 | 159 | 3.15e-21 | 91.3 |
| Msa0593240 | AT1G20030.1 | 43.478 | 115 | 55 | 4 | 108 | 213 | 5 | 118 | 3.70e-21 | 90.9 |
| Msa0593240 | AT1G20030.2 | 43.478 | 115 | 55 | 4 | 108 | 213 | 22 | 135 | 3.93e-21 | 90.9 |
| Msa0593240 | AT4G24180.1 | 36.538 | 156 | 82 | 7 | 79 | 218 | 5 | 159 | 5.03e-21 | 90.5 |
| Msa0593240 | AT2G28790.1 | 34.969 | 163 | 87 | 8 | 85 | 230 | 1 | 161 | 3.04e-19 | 84.7 |
| Msa0593240 | AT4G24180.5 | 35.135 | 148 | 80 | 6 | 86 | 218 | 8 | 154 | 1.62e-18 | 82.8 |
| Msa0593240 | AT4G24180.4 | 35.135 | 148 | 80 | 6 | 86 | 218 | 8 | 154 | 1.78e-18 | 83.6 |
| Msa0593240 | AT4G24180.2 | 35.135 | 148 | 80 | 6 | 86 | 218 | 8 | 154 | 4.00e-18 | 82.4 |
| Msa0593240 | AT1G70250.1 | 34.074 | 135 | 79 | 5 | 108 | 234 | 147 | 279 | 1.97e-15 | 76.3 |
Find 86 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4_2:-19183151 | Msa0593240:CDS |
| ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4_2:-19183009 | Msa0593240:CDS |
| CCACATTAGGCCCAAGCTTT+TGG | 0.287770 | 4_2:-19185516 | Msa0593240:five_prime_UTR |
| AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4_2:-19183150 | Msa0593240:CDS |
| TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4_2:+19182929 | None:intergenic |
| TCATTGGCTACTTCGGCTTC+CGG | 0.318480 | 4_2:+19184581 | None:intergenic |
| CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4_2:-19182942 | Msa0593240:CDS |
| AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4_2:+19183043 | None:intergenic |
| ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4_2:-19182981 | Msa0593240:CDS |
| CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4_2:+19183224 | None:intergenic |
| CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4_2:+19183211 | None:intergenic |
| TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4_2:+19183019 | None:intergenic |
| TGGAATTTGATGGAATTTCA+TGG | 0.382517 | 4_2:-19184868 | Msa0593240:exon |
| GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4_2:-19183119 | Msa0593240:CDS |
| GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4_2:-19183098 | Msa0593240:CDS |
| AATGAGATTGTGCGTGATCC+AGG | 0.422235 | 4_2:-19184563 | Msa0593240:intron |
| ATGAGTTTGATGGAATTTGA+TGG | 0.425202 | 4_2:-19184878 | Msa0593240:five_prime_UTR |
| CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4_2:-19183023 | Msa0593240:CDS |
| GTCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4_2:-19183062 | Msa0593240:CDS |
| GAAAGCTGCTGTAGCCTTTG+TGG | 0.435734 | 4_2:+19185418 | None:intergenic |
| TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4_2:+19182882 | None:intergenic |
| GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4_2:-19183140 | Msa0593240:CDS |
| CACAATCTCATTGGCTACTT+CGG | 0.444118 | 4_2:+19184574 | None:intergenic |
| ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4_2:-19183161 | Msa0593240:CDS |
| GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4_2:+19182948 | None:intergenic |
| CTTAGGTGAGATGAGTTTGA+TGG | 0.466099 | 4_2:-19184888 | Msa0593240:five_prime_UTR |
| GTGTAAATGGGCCAAAAGCT+TGG | 0.473146 | 4_2:+19185505 | None:intergenic |
| TGTAAATGGGCCAAAAGCTT+GGG | 0.473427 | 4_2:+19185506 | None:intergenic |
| GCCACACGGTGTAGCCGCAT+TGG | 0.474171 | 4_2:+19183246 | None:intergenic |
| GAGGAACTGCAGCAGCCAGC+AGG | 0.477012 | 4_2:+19184780 | None:intergenic |
| CTGAAGAGTTTGATGAGCTT+AGG | 0.479230 | 4_2:-19184905 | Msa0593240:five_prime_UTR |
| CATTCACTCTAATTCTCTAA+AGG | 0.488492 | 4_2:-19185293 | Msa0593240:intron |
| TGGATCACGCACAATCTCAT+TGG | 0.489029 | 4_2:+19184565 | None:intergenic |
| CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4_2:+19183217 | None:intergenic |
| TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4_2:-19183283 | Msa0593240:CDS |
| AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4_2:+19183212 | None:intergenic |
| CCAGAGTCCATGTTTGACCT+TGG | 0.495410 | 4_2:+19183186 | None:intergenic |
| CTCTCATCAATCATCTCTCT+CGG | 0.496967 | 4_2:-19185380 | Msa0593240:five_prime_UTR |
| GAATGTAAATGTTGTGAAAC+CGG | 0.498538 | 4_2:-19184600 | Msa0593240:CDS |
| CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4_2:+19183126 | None:intergenic |
| CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4_2:+19183158 | None:intergenic |
| ATTAGTTCTCTCATCTCTCT+CGG | 0.503929 | 4_2:-19185345 | Msa0593240:five_prime_UTR |
| CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4_2:-19183125 | Msa0593240:CDS |
| TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4_2:-19183291 | Msa0593240:CDS |
| GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4_2:-19183221 | Msa0593240:CDS |
| GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4_2:-19182917 | Msa0593240:CDS |
| ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4_2:-19183113 | Msa0593240:CDS |
| ACAAAAGACAACTCTGTAGT+TGG | 0.516091 | 4_2:+19182827 | None:intergenic |
| GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4_2:+19183232 | None:intergenic |
| AATGCGAATGGAGTGCCTGC+TGG | 0.517339 | 4_2:-19184795 | Msa0593240:CDS |
| TGGACTCTGGACATCCCAGC+TGG | 0.517689 | 4_2:-19183173 | Msa0593240:CDS |
| CATCAATCATCTCTCTCGGC+AGG | 0.519196 | 4_2:-19185376 | Msa0593240:five_prime_UTR |
| CCAAAAGCTTGGGCCTAATG+TGG | 0.520380 | 4_2:+19185516 | None:intergenic |
| ACTCTGTAGTTGGTACCACC+TGG | 0.522141 | 4_2:+19182837 | None:intergenic |
| CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4_2:-19183210 | Msa0593240:CDS |
| AGCAGGCACTCCATTCGCAT+TGG | 0.552459 | 4_2:+19184797 | None:intergenic |
| CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4_2:-19183224 | Msa0593240:CDS |
| CCAAGGTCAAACATGGACTC+TGG | 0.568915 | 4_2:-19183186 | Msa0593240:CDS |
| GTTCCTCCTCAATCGAATCT+CGG | 0.569366 | 4_2:-19184764 | Msa0593240:intron |
| CGGCTACACCGTGTGGCCAG+CGG | 0.572344 | 4_2:-19183240 | Msa0593240:CDS |
| GTCTGTACTTTACCCACATT+AGG | 0.583824 | 4_2:-19185529 | None:intergenic |
| TTCTCACCGAGATTCGATTG+AGG | 0.592211 | 4_2:+19184758 | None:intergenic |
| CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4_2:-19183217 | Msa0593240:CDS |
| TACCGGATAAGCTGCAACTG+AGG | 0.596730 | 4_2:+19183060 | None:intergenic |
| ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4_2:+19183112 | None:intergenic |
| TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4_2:-19183227 | Msa0593240:CDS |
| GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4_2:-19182855 | Msa0593240:CDS |
| CTCTGTAGTTGGTACCACCT+GGG | 0.605753 | 4_2:+19182838 | None:intergenic |
| CAAAAGCTTGGGCCTAATGT+GGG | 0.615109 | 4_2:+19185517 | None:intergenic |
| AGTTGGACCAAGGTCAAACA+TGG | 0.621156 | 4_2:-19183193 | Msa0593240:CDS |
| ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4_2:-19183149 | Msa0593240:CDS |
| TCACCGAGATTCGATTGAGG+AGG | 0.624509 | 4_2:+19184761 | None:intergenic |
| ACCAATGCGGCTACACCGTG+TGG | 0.625115 | 4_2:-19183247 | Msa0593240:CDS |
| TGAATGAGAGATTAGCAACA+AGG | 0.630982 | 4_2:+19185310 | None:intergenic |
| GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4_2:-19183203 | Msa0593240:CDS |
| GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4_2:+19183159 | None:intergenic |
| GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4_2:+19183032 | None:intergenic |
| TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4_2:+19182883 | None:intergenic |
| TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4_2:-19182918 | Msa0593240:CDS |
| AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4_2:-19183089 | Msa0593240:CDS |
| ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4_2:-19183020 | Msa0593240:CDS |
| AGTAATTCACAACACCACAA+AGG | 0.700809 | 4_2:-19185432 | Msa0593240:five_prime_UTR |
| TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4_2:-19183086 | Msa0593240:CDS |
| CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4_2:-19182916 | Msa0593240:CDS |
| AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4_2:-19182852 | Msa0593240:CDS |
| TTTGACATTGTAAACCAATG+CGG | 0.728342 | 4_2:-19183260 | Msa0593240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTATTTGTTTGTTTT+TGG | - | chr4_2:19183399-19183418 | Msa0593240:CDS | 10.0% |
| !!! | TAACTGTTATTTTATATTTT+TGG | + | chr4_2:19184399-19184418 | None:intergenic | 10.0% |
| !!! | TCTCATTTAATTTATTTTAT+CGG | + | chr4_2:19184595-19184614 | None:intergenic | 10.0% |
| !! | ACACTTGAAAAAAAAAAAAT+GGG | - | chr4_2:19182862-19182881 | Msa0593240:CDS | 15.0% |
| !!! | TTTTAGGAAAATTGTAAAAT+TGG | - | chr4_2:19183116-19183135 | Msa0593240:CDS | 15.0% |
| !!! | GTTGAAAAGTATTTTTTTTT+TGG | - | chr4_2:19183633-19183652 | Msa0593240:intron | 15.0% |
| !! | ATGAAAGAAAAATATATACA+TGG | + | chr4_2:19184108-19184127 | None:intergenic | 15.0% |
| !! | ATAACATTAAGATGAATAAA+TGG | - | chr4_2:19184194-19184213 | Msa0593240:intron | 15.0% |
| !! | TAACATTAAGATGAATAAAT+GGG | - | chr4_2:19184195-19184214 | Msa0593240:intron | 15.0% |
| !! | CGATAAAATAAATAAATAGA+CGG | + | chr4_2:19184310-19184329 | None:intergenic | 15.0% |
| !!! | AATTACTTTTATTGACTATT+AGG | + | chr4_2:19184423-19184442 | None:intergenic | 15.0% |
| !!! | CTCATTTAATTTATTTTATC+GGG | + | chr4_2:19184594-19184613 | None:intergenic | 15.0% |
| !!! | CAACTTTTTGATAAATAAAT+TGG | + | chr4_2:19184679-19184698 | None:intergenic | 15.0% |
| !!! | TTTTTTTCAAGTGTGTAAAT+GGG | + | chr4_2:19182856-19182875 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCAAGTGTGTAAA+TGG | + | chr4_2:19182857-19182876 | None:intergenic | 20.0% |
| !! | CACACTTGAAAAAAAAAAAA+TGG | - | chr4_2:19182861-19182880 | Msa0593240:CDS | 20.0% |
| !! | CACTTGAAAAAAAAAAAATG+GGG | - | chr4_2:19182863-19182882 | Msa0593240:CDS | 20.0% |
| !!! | GTTAGTTTAATTTGAAGTTT+TGG | - | chr4_2:19183208-19183227 | Msa0593240:CDS | 20.0% |
| !! | TTTATTTCGATTTACACAAA+TGG | - | chr4_2:19183338-19183357 | Msa0593240:CDS | 20.0% |
| !! | TTATTTCGATTTACACAAAT+GGG | - | chr4_2:19183339-19183358 | Msa0593240:CDS | 20.0% |
| !!! | TTATTTGTTTGTTTTTGGAT+TGG | - | chr4_2:19183404-19183423 | Msa0593240:CDS | 20.0% |
| !!! | ACACATTTTCTTGATTAATT+AGG | - | chr4_2:19183610-19183629 | Msa0593240:intron | 20.0% |
| !!! | CACATTTTCTTGATTAATTA+GGG | - | chr4_2:19183611-19183630 | Msa0593240:intron | 20.0% |
| !!! | GGATGATTTTGTTTTAATTT+AGG | - | chr4_2:19183654-19183673 | Msa0593240:intron | 20.0% |
| !! | AACATTAAGATGAATAAATG+GGG | - | chr4_2:19184196-19184215 | Msa0593240:intron | 20.0% |
| !!! | TGATTAAAGTGATACTTTTA+CGG | - | chr4_2:19184527-19184546 | Msa0593240:intron | 20.0% |
| !!! | AAGTTCTCTATAATTTCTTT+TGG | + | chr4_2:19184778-19184797 | None:intergenic | 20.0% |
| ! | AAAACAAAAAACAACCAGAA+GGG | + | chr4_2:19183320-19183339 | None:intergenic | 25.0% |
| ! | AAAAACAAAAAACAACCAGA+AGG | + | chr4_2:19183321-19183340 | None:intergenic | 25.0% |
| !! | TTTTCTTATGTGGTAAAGAT+TGG | - | chr4_2:19183365-19183384 | Msa0593240:CDS | 25.0% |
| !!! | TTTTGGATTGGTTGATTTTT+AGG | - | chr4_2:19183416-19183435 | Msa0593240:intron | 25.0% |
| !!! | TGTTTTTGTTAGATAGAACA+AGG | - | chr4_2:19183718-19183737 | Msa0593240:intron | 25.0% |
| ! | TTTCCAATTTCTACATAGTT+TGG | - | chr4_2:19183941-19183960 | Msa0593240:intron | 25.0% |
| ! | AAACCAAACTATGTAGAAAT+TGG | + | chr4_2:19183947-19183966 | None:intergenic | 25.0% |
| ! | AGTAAGGAGAACAAAATTAA+TGG | - | chr4_2:19184079-19184098 | Msa0593240:intron | 25.0% |
| ! | AATTGAGCCTTAGTTTATAT+AGG | + | chr4_2:19184931-19184950 | None:intergenic | 25.0% |
| !! | ATTGATTTATCTGTGATTGA+TGG | - | chr4_2:19185365-19185384 | Msa0593240:five_prime_UTR | 25.0% |
| !!! | GTATTCGTTTTAACATCATT+GGG | + | chr4_2:19185485-19185504 | None:intergenic | 25.0% |
| !!! | TGTATTCGTTTTAACATCAT+TGG | + | chr4_2:19185486-19185505 | None:intergenic | 25.0% |
| CATTCACTCTAATTCTCTAA+AGG | - | chr4_2:19183053-19183072 | Msa0593240:CDS | 30.0% | |
| TAAAACAAGGAAAGAAAGGA+AGG | + | chr4_2:19183093-19183112 | None:intergenic | 30.0% | |
| !!! | TTCCTTTCTTTCCTTGTTTT+AGG | - | chr4_2:19183092-19183111 | Msa0593240:CDS | 30.0% |
| !!! | TCCTTTCTTTCCTTGTTTTA+GGG | - | chr4_2:19183093-19183112 | Msa0593240:CDS | 30.0% |
| !!! | TTTCCTTGTTTTAGGGTTTT+AGG | - | chr4_2:19183100-19183119 | Msa0593240:CDS | 30.0% |
| TTTCCTAAAACCCTAAAACA+AGG | + | chr4_2:19183106-19183125 | None:intergenic | 30.0% | |
| AAACAAAAAACAACCAGAAG+GGG | + | chr4_2:19183319-19183338 | None:intergenic | 30.0% | |
| !! | AAATGGGTCATTTTCTTATG+TGG | - | chr4_2:19183355-19183374 | Msa0593240:CDS | 30.0% |
| ATGAGTTTGATGGAATTTGA+TGG | - | chr4_2:19183468-19183487 | Msa0593240:intron | 30.0% | |
| TGGAATTTGATGGAATTTCA+TGG | - | chr4_2:19183478-19183497 | Msa0593240:intron | 30.0% | |
| !! | ATGGAGTTTTATGAGTTTGA+TGG | - | chr4_2:19183497-19183516 | Msa0593240:intron | 30.0% |
| !! | GTTTTATGAGTTTGATGGAT+TGG | - | chr4_2:19183502-19183521 | Msa0593240:intron | 30.0% |
| GAATGTAAATGTTGTGAAAC+CGG | - | chr4_2:19183746-19183765 | Msa0593240:intron | 30.0% | |
| AGGTCTTAGGAAACAAATTT+GGG | - | chr4_2:19183803-19183822 | Msa0593240:intron | 30.0% | |
| ! | ATTTTTATATGAGCTGTCTG+CGG | + | chr4_2:19184142-19184161 | None:intergenic | 30.0% |
| CTGATGTTGAAATATAGACA+TGG | - | chr4_2:19184819-19184838 | Msa0593240:CDS | 30.0% | |
| ! | ATGTTTTGTGAGTAGAAAGT+GGG | + | chr4_2:19184954-19184973 | None:intergenic | 30.0% |
| ! | AATGTTTTGTGAGTAGAAAG+TGG | + | chr4_2:19184955-19184974 | None:intergenic | 30.0% |
| TTTGACATTGTAAACCAATG+CGG | - | chr4_2:19185086-19185105 | Msa0593240:intron | 30.0% | |
| ! | TGCAACAAAGTATTAAACTG+CGG | - | chr4_2:19185428-19185447 | Msa0593240:five_prime_UTR | 30.0% |
| AGTAATTCACAACACCACAA+AGG | - | chr4_2:19182914-19182933 | Msa0593240:CDS | 35.0% | |
| ! | ATTAGTTCTCTCATCTCTCT+CGG | - | chr4_2:19183001-19183020 | Msa0593240:CDS | 35.0% |
| TGAATGAGAGATTAGCAACA+AGG | + | chr4_2:19183039-19183058 | None:intergenic | 35.0% | |
| ACCCTAAAACAAGGAAAGAA+AGG | + | chr4_2:19183097-19183116 | None:intergenic | 35.0% | |
| GCAGACTGCAATTGAAAAAT+TGG | - | chr4_2:19183146-19183165 | Msa0593240:CDS | 35.0% | |
| GTGAGTGTGTTTACTTGATT+AGG | - | chr4_2:19183683-19183702 | Msa0593240:intron | 35.0% | |
| ! | CAAATTTGTTTCCTAAGACC+TGG | + | chr4_2:19183804-19183823 | None:intergenic | 35.0% |
| CAGGTCTTAGGAAACAAATT+TGG | - | chr4_2:19183802-19183821 | Msa0593240:intron | 35.0% | |
| ! | GAAACAAATTTGGGAGTATG+CGG | - | chr4_2:19183812-19183831 | Msa0593240:intron | 35.0% |
| TATATCCGTCAAAGAGCAAA+TGG | - | chr4_2:19183891-19183910 | Msa0593240:intron | 35.0% | |
| !!! | TTTGCTTTTATTTTTCGCCC+CGG | - | chr4_2:19184022-19184041 | Msa0593240:intron | 35.0% |
| ! | TTTTTATATGAGCTGTCTGC+GGG | + | chr4_2:19184141-19184160 | None:intergenic | 35.0% |
| ! | CAGCTTTGATGACATAAACA+AGG | + | chr4_2:19184802-19184821 | None:intergenic | 35.0% |
| TATAGTCAAGCTCTGCAATT+TGG | - | chr4_2:19184850-19184869 | Msa0593240:CDS | 35.0% | |
| ! | ATCAATTTTCCACATACCTG+TGG | - | chr4_2:19184905-19184924 | Msa0593240:five_prime_UTR | 35.0% |
| AACTTCATCAGGTCGAATTT+GGG | - | chr4_2:19185196-19185215 | Msa0593240:intron | 35.0% | |
| AATTGTCAAACTGGTGATTG+CGG | - | chr4_2:19185257-19185276 | Msa0593240:intron | 35.0% | |
| CTTACCGAATTCACACTTAA+CGG | - | chr4_2:19185323-19185342 | Msa0593240:five_prime_UTR | 35.0% | |
| ACTTAACGGTGGAAACAATT+TGG | - | chr4_2:19185337-19185356 | Msa0593240:five_prime_UTR | 35.0% | |
| CAACTTAGTTCAACCTCTAA+TGG | - | chr4_2:19185404-19185423 | Msa0593240:five_prime_UTR | 35.0% | |
| TACTTTGTTGCATCCATTAG+AGG | + | chr4_2:19185420-19185439 | None:intergenic | 35.0% | |
| ! | GCAACAAAGTATTAAACTGC+GGG | - | chr4_2:19185429-19185448 | Msa0593240:five_prime_UTR | 35.0% |
| ! | CAACAAAGTATTAAACTGCG+GGG | - | chr4_2:19185430-19185449 | Msa0593240:five_prime_UTR | 35.0% |
| ACAAAAGACAACTCTGTAGT+TGG | + | chr4_2:19185522-19185541 | None:intergenic | 35.0% | |
| TGTAAATGGGCCAAAAGCTT+GGG | + | chr4_2:19182843-19182862 | None:intergenic | 40.0% | |
| CTCTCATCAATCATCTCTCT+CGG | - | chr4_2:19182966-19182985 | Msa0593240:CDS | 40.0% | |
| CTGAAGAGTTTGATGAGCTT+AGG | - | chr4_2:19183441-19183460 | Msa0593240:intron | 40.0% | |
| CTTAGGTGAGATGAGTTTGA+TGG | - | chr4_2:19183458-19183477 | Msa0593240:intron | 40.0% | |
| ! | TTTTCGTTGACCAATGCGAA+TGG | - | chr4_2:19183539-19183558 | Msa0593240:intron | 40.0% |
| ! | CACAATCTCATTGGCTACTT+CGG | + | chr4_2:19183775-19183794 | None:intergenic | 40.0% |
| ! | TTTTATATGAGCTGTCTGCG+GGG | + | chr4_2:19184140-19184159 | None:intergenic | 40.0% |
| !! | GATGAATAAATGGGGTGTTG+AGG | - | chr4_2:19184204-19184223 | Msa0593240:intron | 40.0% |
| CACGTTCAGCATTTCATACA+CGG | + | chr4_2:19184730-19184749 | None:intergenic | 40.0% | |
| AAATGCTGAACGTGTGTCTA+AGG | - | chr4_2:19184736-19184755 | Msa0593240:intron | 40.0% | |
| AATGCTGAACGTGTGTCTAA+GGG | - | chr4_2:19184737-19184756 | Msa0593240:intron | 40.0% | |
| TTATATAGGCCACAGGTATG+TGG | + | chr4_2:19184917-19184936 | None:intergenic | 40.0% | |
| CCTTAGTTTATATAGGCCAC+AGG | + | chr4_2:19184924-19184943 | None:intergenic | 40.0% | |
| CCTGTGGCCTATATAAACTA+AGG | - | chr4_2:19184921-19184940 | Msa0593240:intron | 40.0% | |
| GAACTTCATCAGGTCGAATT+TGG | - | chr4_2:19185195-19185214 | Msa0593240:intron | 40.0% | |
| ACTTCATCAGGTCGAATTTG+GGG | - | chr4_2:19185197-19185216 | Msa0593240:intron | 40.0% | |
| GGCAATGGTAATTGTCAAAC+TGG | - | chr4_2:19185248-19185267 | Msa0593240:intron | 40.0% | |
| TCCACCGTTAAGTGTGAATT+CGG | + | chr4_2:19185330-19185349 | None:intergenic | 40.0% | |
| GAGGTTGAACTAAGTTGCAT+TGG | + | chr4_2:19185401-19185420 | None:intergenic | 40.0% | |
| !! | TGGGTTGATGATAAGCATCA+GGG | + | chr4_2:19185466-19185485 | None:intergenic | 40.0% |
| !! | TTGGGTTGATGATAAGCATC+AGG | + | chr4_2:19185467-19185486 | None:intergenic | 40.0% |
| GTTAAAACGAATACATGCCC+AGG | - | chr4_2:19185491-19185510 | Msa0593240:five_prime_UTR | 40.0% | |
| CAAAAGCTTGGGCCTAATGT+GGG | + | chr4_2:19182832-19182851 | None:intergenic | 45.0% | |
| GTGTAAATGGGCCAAAAGCT+TGG | + | chr4_2:19182844-19182863 | None:intergenic | 45.0% | |
| ! | GAGATTTTCACAACCCCTTC+TGG | - | chr4_2:19183303-19183322 | Msa0593240:CDS | 45.0% |
| GTTCCTCCTCAATCGAATCT+CGG | - | chr4_2:19183582-19183601 | Msa0593240:intron | 45.0% | |
| TTCTCACCGAGATTCGATTG+AGG | + | chr4_2:19183591-19183610 | None:intergenic | 45.0% | |
| TGGATCACGCACAATCTCAT+TGG | + | chr4_2:19183784-19183803 | None:intergenic | 45.0% | |
| AATGAGATTGTGCGTGATCC+AGG | - | chr4_2:19183783-19183802 | Msa0593240:intron | 45.0% | |
| ATCCGTCAAAGAGCAAATGG+CGG | - | chr4_2:19183894-19183913 | Msa0593240:intron | 45.0% | |
| AGCCAGGAATTTCATAGAGC+CGG | + | chr4_2:19184044-19184063 | None:intergenic | 45.0% | |
| TTCTCCTTACTGCTGTACAG+TGG | + | chr4_2:19184070-19184089 | None:intergenic | 45.0% | |
| TTTATATGAGCTGTCTGCGG+GGG | + | chr4_2:19184139-19184158 | None:intergenic | 45.0% | |
| TCTCTGCTTGATATCTGCTC+AGG | - | chr4_2:19185055-19185074 | Msa0593240:intron | 45.0% | |
| AGTTGGACCAAGGTCAAACA+TGG | - | chr4_2:19185153-19185172 | Msa0593240:intron | 45.0% | |
| GTGAATTCGGTAAGAGTGAG+CGG | + | chr4_2:19185317-19185336 | None:intergenic | 45.0% | |
| ACCGAATTCACACTTAACGG+TGG | - | chr4_2:19185326-19185345 | Msa0593240:five_prime_UTR | 45.0% | |
| AAAACGAATACATGCCCAGG+TGG | - | chr4_2:19185494-19185513 | Msa0593240:five_prime_UTR | 45.0% | |
| CCAAAAGCTTGGGCCTAATG+TGG | + | chr4_2:19182833-19182852 | None:intergenic | 50.0% | |
| ! | CCACATTAGGCCCAAGCTTT+TGG | - | chr4_2:19182830-19182849 | Msa0593240:CDS | 50.0% |
| GAAAGCTGCTGTAGCCTTTG+TGG | + | chr4_2:19182931-19182950 | None:intergenic | 50.0% | |
| CATCAATCATCTCTCTCGGC+AGG | - | chr4_2:19182970-19182989 | Msa0593240:CDS | 50.0% | |
| TCACCGAGATTCGATTGAGG+AGG | + | chr4_2:19183588-19183607 | None:intergenic | 50.0% | |
| ! | TCATTGGCTACTTCGGCTTC+CGG | + | chr4_2:19183768-19183787 | None:intergenic | 50.0% |
| TTGTGCGTGATCCAGGTCTT+AGG | - | chr4_2:19183790-19183809 | Msa0593240:intron | 50.0% | |
| ! | TGGGAGTATGCGGTGATGTT+TGG | - | chr4_2:19183822-19183841 | Msa0593240:intron | 50.0% |
| ! | GGGAGTATGCGGTGATGTTT+GGG | - | chr4_2:19183823-19183842 | Msa0593240:intron | 50.0% |
| CACCGCCATTTGCTCTTTGA+CGG | + | chr4_2:19183899-19183918 | None:intergenic | 50.0% | |
| AGCAAATGGCGGTGATGTTG+AGG | - | chr4_2:19183905-19183924 | Msa0593240:intron | 50.0% | |
| CCAGGAATTTCATAGAGCCG+GGG | + | chr4_2:19184042-19184061 | None:intergenic | 50.0% | |
| GCCAGGAATTTCATAGAGCC+GGG | + | chr4_2:19184043-19184062 | None:intergenic | 50.0% | |
| TCCTTACTGCTGTACAGTGG+CGG | + | chr4_2:19184067-19184086 | None:intergenic | 50.0% | |
| TGATATCTGCTCAGGCAGCT+AGG | - | chr4_2:19185063-19185082 | Msa0593240:intron | 50.0% | |
| CCAGAGTCCATGTTTGACCT+TGG | + | chr4_2:19185163-19185182 | None:intergenic | 50.0% | |
| CCAAGGTCAAACATGGACTC+TGG | - | chr4_2:19185160-19185179 | Msa0593240:intron | 50.0% | |
| ATCCCAGCTGGAACTTCATC+AGG | - | chr4_2:19185185-19185204 | Msa0593240:intron | 50.0% | |
| GACCTGATGAAGTTCCAGCT+GGG | + | chr4_2:19185190-19185209 | None:intergenic | 50.0% | |
| TGTCAAACTGGTGATTGCGG+TGG | - | chr4_2:19185260-19185279 | Msa0593240:intron | 50.0% | |
| GTCCTCAGTTGCAGCTTATC+CGG | - | chr4_2:19185284-19185303 | Msa0593240:intron | 50.0% | |
| TACCGGATAAGCTGCAACTG+AGG | + | chr4_2:19185289-19185308 | None:intergenic | 50.0% | |
| ! | AAGAGTGAGCGGACTCTTAC+CGG | + | chr4_2:19185306-19185325 | None:intergenic | 50.0% |
| ! | CTCTGTAGTTGGTACCACCT+GGG | + | chr4_2:19185511-19185530 | None:intergenic | 50.0% |
| ! | ACTCTGTAGTTGGTACCACC+TGG | + | chr4_2:19185512-19185531 | None:intergenic | 50.0% |
| AGCAGGCACTCCATTCGCAT+TGG | + | chr4_2:19183552-19183571 | None:intergenic | 55.0% | |
| ! | AATGCGAATGGAGTGCCTGC+TGG | - | chr4_2:19183551-19183570 | Msa0593240:intron | 55.0% |
| TGCGGTGATGTTTGGGAGCT+TGG | - | chr4_2:19183830-19183849 | Msa0593240:intron | 55.0% | |
| CCCCGGCTCTATGAAATTCC+TGG | - | chr4_2:19184039-19184058 | Msa0593240:intron | 55.0% | |
| TCCGCCACTGTACAGCAGTA+AGG | - | chr4_2:19184063-19184082 | Msa0593240:intron | 55.0% | |
| CGACCTGATGAAGTTCCAGC+TGG | + | chr4_2:19185191-19185210 | None:intergenic | 55.0% | |
| ! | CGTCGAAGGTGCAACCAGTT+CGG | + | chr4_2:19185223-19185242 | None:intergenic | 55.0% |
| CGAACTGGTTGCACCTTCGA+CGG | - | chr4_2:19185221-19185240 | Msa0593240:intron | 55.0% | |
| ACCTTCGACGGTTCAGGCAA+TGG | - | chr4_2:19185233-19185252 | Msa0593240:intron | 55.0% | |
| ACCATTGCCTGAACCGTCGA+AGG | + | chr4_2:19185237-19185256 | None:intergenic | 55.0% | |
| ACCAATGCGGCTACACCGTG+TGG | - | chr4_2:19185099-19185118 | Msa0593240:intron | 60.0% | |
| AACTGCCGACCTCCACCACT+GGG | + | chr4_2:19185137-19185156 | None:intergenic | 60.0% | |
| TGGACTCTGGACATCCCAGC+TGG | - | chr4_2:19185173-19185192 | Msa0593240:intron | 60.0% | |
| ! | GGTCGAATTTGGGGCCGAAC+TGG | - | chr4_2:19185206-19185225 | Msa0593240:intron | 60.0% |
| GGTTGCACCTTCGACGGTTC+AGG | - | chr4_2:19185227-19185246 | Msa0593240:intron | 60.0% | |
| GAGGAACTGCAGCAGCCAGC+AGG | + | chr4_2:19183569-19183588 | None:intergenic | 65.0% | |
| ! | TGCTGTACAGTGGCGGAGCC+AGG | + | chr4_2:19184060-19184079 | None:intergenic | 65.0% |
| GCCACACGGTGTAGCCGCAT+TGG | + | chr4_2:19185103-19185122 | None:intergenic | 65.0% | |
| ! | CCACACCCAGTGGTGGAGGT+CGG | - | chr4_2:19185129-19185148 | Msa0593240:intron | 65.0% |
| CAACTGCCGACCTCCACCAC+TGG | + | chr4_2:19185138-19185157 | None:intergenic | 65.0% | |
| ! | CAGTGGTGGAGGTCGGCAGT+TGG | - | chr4_2:19185136-19185155 | Msa0593240:intron | 65.0% |
| GGAGGTCGGCAGTTGGACCA+AGG | - | chr4_2:19185143-19185162 | Msa0593240:intron | 65.0% | |
| CGGCTACACCGTGTGGCCAG+CGG | - | chr4_2:19185106-19185125 | Msa0593240:intron | 70.0% | |
| CCGACCTCCACCACTGGGTG+TGG | + | chr4_2:19185132-19185151 | None:intergenic | 70.0% | |
| GGGTGTGGCCGCTGGCCACA+CGG | + | chr4_2:19185117-19185136 | None:intergenic | 75.0% | |
| TGGCCAGCGGCCACACCCAG+TGG | - | chr4_2:19185119-19185138 | Msa0593240:intron | 75.0% | |
| CCACCACTGGGTGTGGCCGC+TGG | + | chr4_2:19185125-19185144 | None:intergenic | 75.0% | |
| CCAGCGGCCACACCCAGTGG+TGG | - | chr4_2:19185122-19185141 | Msa0593240:intron | 75.0% | |
| GCGGCCACACCCAGTGGTGG+AGG | - | chr4_2:19185125-19185144 | Msa0593240:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 19182821 | 19185547 | 19182821 | ID=Msa0593240;Name=Msa0593240 |
| chr4_2 | mRNA | 19182821 | 19185547 | 19182821 | ID=Msa0593240-mRNA-1;Parent=Msa0593240;Name=Msa0593240-mRNA-1;_AED=0.28;_eAED=0.33;_QI=313|0.33|0.5|1|0.33|0|4|0|260 |
| chr4_2 | exon | 19182821 | 19183425 | 19182821 | ID=Msa0593240-mRNA-1:exon:5545;Parent=Msa0593240-mRNA-1 |
| chr4_2 | exon | 19184564 | 19184634 | 19184564 | ID=Msa0593240-mRNA-1:exon:5544;Parent=Msa0593240-mRNA-1 |
| chr4_2 | exon | 19184765 | 19184930 | 19184765 | ID=Msa0593240-mRNA-1:exon:5543;Parent=Msa0593240-mRNA-1 |
| chr4_2 | exon | 19185294 | 19185547 | 19185294 | ID=Msa0593240-mRNA-1:exon:5542;Parent=Msa0593240-mRNA-1 |
| chr4_2 | five_prime_UTR | 19185294 | 19185547 | 19185294 | ID=Msa0593240-mRNA-1:five_prime_utr;Parent=Msa0593240-mRNA-1 |
| chr4_2 | five_prime_UTR | 19184872 | 19184930 | 19184872 | ID=Msa0593240-mRNA-1:five_prime_utr;Parent=Msa0593240-mRNA-1 |
| chr4_2 | CDS | 19184765 | 19184871 | 19184765 | ID=Msa0593240-mRNA-1:cds;Parent=Msa0593240-mRNA-1 |
| chr4_2 | CDS | 19184564 | 19184634 | 19184564 | ID=Msa0593240-mRNA-1:cds;Parent=Msa0593240-mRNA-1 |
| chr4_2 | CDS | 19182821 | 19183425 | 19182821 | ID=Msa0593240-mRNA-1:cds;Parent=Msa0593240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
