Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593260 | XP_013447002.1 | 88.636 | 176 | 17 | 1 | 1 | 176 | 1 | 173 | 2.66e-107 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593260 | sp|P31110|TLP_ORYSJ | 61.635 | 159 | 55 | 3 | 19 | 176 | 24 | 177 | 1.90e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0593240 | Msa0593260 | 0.935480 | 7.934737e-97 | -8.615850e-47 |
| Msa0593250 | Msa0593260 | 0.972575 | 5.443214e-135 | -8.615850e-47 |
| Msa0593260 | Msa1351070 | 0.807524 | 4.846110e-50 | -8.615850e-47 |
| Msa0593260 | Msa1412280 | 0.809996 | 1.435404e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593260 | MtrunA17_Chr8g0386351 | 80.114 | 176 | 35 | 0 | 1 | 176 | 43 | 218 | 1.37e-106 | 304 |
| Msa0593260 | MtrunA17_Chr8g0386341 | 47.748 | 222 | 68 | 4 | 2 | 176 | 28 | 248 | 7.36e-62 | 191 |
| Msa0593260 | MtrunA17_Chr5g0397821 | 44.660 | 206 | 65 | 3 | 19 | 176 | 21 | 225 | 5.74e-49 | 158 |
| Msa0593260 | MtrunA17_Chr5g0397831 | 50.000 | 162 | 74 | 3 | 1 | 156 | 1 | 161 | 1.14e-46 | 152 |
| Msa0593260 | MtrunA17_Chr8g0386361 | 47.727 | 176 | 34 | 3 | 1 | 176 | 1 | 118 | 3.19e-43 | 140 |
| Msa0593260 | MtrunA17_Chr2g0311531 | 41.206 | 199 | 72 | 7 | 21 | 176 | 26 | 222 | 7.54e-36 | 125 |
| Msa0593260 | MtrunA17_Chr5g0424221 | 45.255 | 137 | 62 | 5 | 1 | 132 | 11 | 139 | 2.24e-28 | 106 |
| Msa0593260 | MtrunA17_Chr4g0037331 | 41.420 | 169 | 75 | 9 | 1 | 150 | 1 | 164 | 5.30e-28 | 107 |
| Msa0593260 | MtrunA17_Chr5g0428801 | 46.269 | 134 | 62 | 4 | 5 | 129 | 8 | 140 | 6.42e-28 | 106 |
| Msa0593260 | MtrunA17_Chr6g0482741 | 37.857 | 140 | 76 | 4 | 1 | 132 | 1 | 137 | 6.73e-28 | 104 |
| Msa0593260 | MtrunA17_Chr7g0239131 | 39.623 | 159 | 81 | 6 | 1 | 149 | 1 | 154 | 6.91e-27 | 102 |
| Msa0593260 | MtrunA17_Chr8g0392961 | 44.348 | 115 | 53 | 4 | 26 | 132 | 31 | 142 | 9.59e-27 | 101 |
| Msa0593260 | MtrunA17_Chr1g0154591 | 47.200 | 125 | 56 | 3 | 19 | 134 | 10 | 133 | 1.84e-26 | 100 |
| Msa0593260 | MtrunA17_Chr5g0405611 | 33.766 | 231 | 89 | 11 | 6 | 176 | 82 | 308 | 2.99e-26 | 102 |
| Msa0593260 | MtrunA17_Chr2g0311521 | 35.683 | 227 | 73 | 10 | 21 | 176 | 23 | 247 | 1.97e-25 | 102 |
| Msa0593260 | MtrunA17_Chr4g0037351 | 42.000 | 150 | 73 | 7 | 3 | 139 | 5 | 153 | 2.01e-25 | 99.8 |
| Msa0593260 | MtrunA17_Chr8g0371771 | 41.497 | 147 | 68 | 8 | 17 | 150 | 26 | 167 | 7.79e-25 | 97.8 |
| Msa0593260 | MtrunA17_Chr8g0352471 | 40.714 | 140 | 72 | 5 | 2 | 132 | 7 | 144 | 1.21e-24 | 97.4 |
| Msa0593260 | MtrunA17_Chr3g0141341 | 40.816 | 147 | 68 | 5 | 19 | 150 | 9 | 151 | 1.26e-24 | 95.9 |
| Msa0593260 | MtrunA17_Chr8g0351851 | 37.791 | 172 | 85 | 8 | 1 | 157 | 1 | 165 | 2.52e-24 | 95.1 |
| Msa0593260 | MtrunA17_Chr8g0371781 | 39.181 | 171 | 80 | 7 | 21 | 175 | 27 | 189 | 8.62e-24 | 95.1 |
| Msa0593260 | MtrunA17_Chr1g0156711 | 39.241 | 158 | 78 | 5 | 3 | 143 | 4 | 160 | 9.39e-24 | 95.1 |
| Msa0593260 | MtrunA17_Chr5g0405581 | 36.747 | 166 | 82 | 7 | 3 | 150 | 8 | 168 | 2.37e-23 | 93.6 |
| Msa0593260 | MtrunA17_Chr2g0312181 | 31.148 | 244 | 99 | 8 | 1 | 176 | 1 | 243 | 6.46e-23 | 91.7 |
| Msa0593260 | MtrunA17_Chr8g0357311 | 39.855 | 138 | 72 | 5 | 4 | 131 | 7 | 143 | 9.18e-23 | 91.3 |
| Msa0593260 | MtrunA17_Chr3g0112091 | 40.876 | 137 | 66 | 7 | 23 | 149 | 18 | 149 | 2.73e-22 | 89.7 |
| Msa0593260 | MtrunA17_Chr3g0142781 | 40.141 | 142 | 71 | 6 | 1 | 129 | 1 | 141 | 2.99e-22 | 91.3 |
| Msa0593260 | MtrunA17_Chr1g0180161 | 35.714 | 154 | 87 | 7 | 1 | 144 | 1 | 152 | 3.43e-21 | 87.4 |
| Msa0593260 | MtrunA17_Chr2g0311551 | 33.778 | 225 | 78 | 10 | 21 | 176 | 22 | 244 | 3.68e-21 | 89.7 |
| Msa0593260 | MtrunA17_Chr2g0311561 | 37.126 | 167 | 83 | 7 | 19 | 167 | 8 | 170 | 1.01e-20 | 86.7 |
| Msa0593260 | MtrunA17_Chr6g0452331 | 37.681 | 138 | 75 | 5 | 16 | 143 | 23 | 159 | 1.74e-20 | 85.5 |
| Msa0593260 | MtrunA17_Chr1g0180231 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 1.96e-20 | 85.1 |
| Msa0593260 | MtrunA17_Chr1g0179871 | 32.973 | 185 | 91 | 7 | 1 | 176 | 1 | 161 | 1.96e-20 | 85.1 |
| Msa0593260 | MtrunA17_Chr1g0180121 | 33.962 | 159 | 90 | 6 | 1 | 150 | 1 | 153 | 3.48e-20 | 84.3 |
| Msa0593260 | MtrunA17_Chr4g0031221 | 36.641 | 131 | 73 | 4 | 11 | 132 | 18 | 147 | 4.34e-20 | 84.3 |
| Msa0593260 | MtrunA17_Chr7g0265011 | 37.956 | 137 | 68 | 7 | 10 | 131 | 49 | 183 | 4.48e-20 | 84.7 |
| Msa0593260 | MtrunA17_Chr5g0406771 | 36.567 | 134 | 75 | 4 | 12 | 135 | 3 | 136 | 2.63e-19 | 80.5 |
| Msa0593260 | MtrunA17_Chr1g0179891 | 32.778 | 180 | 88 | 7 | 6 | 176 | 1 | 156 | 2.96e-19 | 81.6 |
| Msa0593260 | MtrunA17_Chr1g0179851 | 36.232 | 138 | 76 | 6 | 3 | 131 | 1 | 135 | 3.76e-18 | 79.0 |
| Msa0593260 | MtrunA17_Chr1g0180221 | 31.351 | 185 | 94 | 7 | 1 | 176 | 41 | 201 | 7.81e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593260 | AT4G11650.1 | 44.643 | 224 | 75 | 4 | 1 | 176 | 1 | 223 | 9.78e-55 | 173 |
| Msa0593260 | AT1G77700.3 | 51.261 | 119 | 50 | 3 | 18 | 132 | 57 | 171 | 1.47e-33 | 121 |
| Msa0593260 | AT1G77700.2 | 47.368 | 133 | 62 | 3 | 4 | 132 | 43 | 171 | 2.25e-33 | 120 |
| Msa0593260 | AT1G77700.1 | 51.261 | 119 | 50 | 3 | 18 | 132 | 85 | 199 | 2.44e-33 | 121 |
| Msa0593260 | AT1G75050.1 | 46.324 | 136 | 66 | 2 | 2 | 131 | 5 | 139 | 1.99e-30 | 111 |
| Msa0593260 | AT1G75030.1 | 44.203 | 138 | 68 | 4 | 1 | 131 | 4 | 139 | 7.93e-28 | 104 |
| Msa0593260 | AT4G36010.1 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 2.70e-26 | 102 |
| Msa0593260 | AT4G36010.2 | 50.847 | 118 | 47 | 5 | 24 | 131 | 25 | 141 | 2.70e-26 | 102 |
| Msa0593260 | AT1G18250.1 | 45.455 | 121 | 55 | 4 | 19 | 131 | 18 | 135 | 3.64e-26 | 100 |
| Msa0593260 | AT1G73620.1 | 44.628 | 121 | 56 | 4 | 19 | 131 | 39 | 156 | 5.31e-26 | 100 |
| Msa0593260 | AT4G38660.1 | 42.384 | 151 | 66 | 8 | 12 | 143 | 17 | 165 | 7.92e-26 | 101 |
| Msa0593260 | AT1G18250.2 | 44.262 | 122 | 57 | 4 | 18 | 131 | 18 | 136 | 8.77e-26 | 99.4 |
| Msa0593260 | AT1G75040.1 | 33.750 | 240 | 91 | 8 | 1 | 176 | 4 | 239 | 8.79e-26 | 99.4 |
| Msa0593260 | AT4G38660.2 | 43.056 | 144 | 64 | 6 | 16 | 143 | 2 | 143 | 1.97e-25 | 100 |
| Msa0593260 | AT1G75800.1 | 38.994 | 159 | 83 | 6 | 1 | 149 | 1 | 155 | 2.74e-25 | 99.8 |
| Msa0593260 | AT2G17860.1 | 42.958 | 142 | 69 | 6 | 1 | 131 | 1 | 141 | 1.64e-24 | 96.3 |
| Msa0593260 | AT5G24620.1 | 38.621 | 145 | 77 | 5 | 3 | 137 | 6 | 148 | 5.57e-24 | 97.4 |
| Msa0593260 | AT5G24620.4 | 38.621 | 145 | 77 | 5 | 3 | 137 | 61 | 203 | 6.73e-24 | 97.4 |
| Msa0593260 | AT4G38670.3 | 42.254 | 142 | 69 | 6 | 1 | 131 | 2 | 141 | 7.53e-24 | 95.1 |
| Msa0593260 | AT4G38670.1 | 42.254 | 142 | 69 | 6 | 1 | 131 | 2 | 141 | 7.53e-24 | 95.1 |
| Msa0593260 | AT5G24620.3 | 38.621 | 145 | 77 | 5 | 3 | 137 | 82 | 224 | 7.71e-24 | 97.4 |
| Msa0593260 | AT1G19320.1 | 39.716 | 141 | 71 | 6 | 3 | 132 | 9 | 146 | 4.36e-23 | 92.4 |
| Msa0593260 | AT5G40020.1 | 32.778 | 180 | 95 | 8 | 1 | 158 | 1 | 176 | 1.97e-22 | 90.9 |
| Msa0593260 | AT5G38280.1 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 2.12e-22 | 93.6 |
| Msa0593260 | AT4G38670.2 | 44.094 | 127 | 58 | 6 | 16 | 131 | 1 | 125 | 2.43e-22 | 90.9 |
| Msa0593260 | AT5G38280.2 | 40.146 | 137 | 68 | 6 | 6 | 129 | 5 | 140 | 2.46e-22 | 93.6 |
| Msa0593260 | AT5G02140.2 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 4.06e-22 | 89.7 |
| Msa0593260 | AT5G02140.1 | 34.302 | 172 | 98 | 6 | 7 | 164 | 6 | 176 | 4.78e-22 | 90.5 |
| Msa0593260 | AT4G24180.6 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 5.73e-22 | 89.7 |
| Msa0593260 | AT4G24180.3 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 9.30e-22 | 90.1 |
| Msa0593260 | AT4G24180.1 | 37.415 | 147 | 76 | 6 | 3 | 134 | 14 | 159 | 1.24e-21 | 89.7 |
| Msa0593260 | AT1G20030.1 | 43.478 | 115 | 55 | 4 | 24 | 129 | 5 | 118 | 1.33e-21 | 89.4 |
| Msa0593260 | AT1G20030.2 | 43.478 | 115 | 55 | 4 | 24 | 129 | 22 | 135 | 1.65e-21 | 89.4 |
| Msa0593260 | AT2G28790.2 | 34.706 | 170 | 89 | 9 | 1 | 150 | 26 | 193 | 6.83e-20 | 84.3 |
| Msa0593260 | AT2G28790.1 | 34.969 | 163 | 87 | 8 | 1 | 146 | 1 | 161 | 7.71e-20 | 84.0 |
| Msa0593260 | AT4G24180.5 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 2.53e-19 | 82.4 |
| Msa0593260 | AT4G24180.4 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 4.23e-19 | 82.8 |
| Msa0593260 | AT4G24180.2 | 35.135 | 148 | 80 | 6 | 2 | 134 | 8 | 154 | 6.25e-19 | 82.4 |
| Msa0593260 | AT1G70250.1 | 34.074 | 135 | 79 | 5 | 24 | 150 | 147 | 279 | 4.49e-16 | 75.5 |
| Msa0593260 | AT4G18250.1 | 27.570 | 214 | 90 | 10 | 26 | 176 | 61 | 272 | 5.97e-11 | 60.5 |
Find 58 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTCATCAGGTCGAATT+TGG | 0.148264 | 4_2:-19204304 | Msa0593260:CDS |
| ACTTAACGGTGGAAACAATT+TGG | 0.219094 | 4_2:-19204162 | Msa0593260:CDS |
| AACTTCATCAGGTCGAATTT+GGG | 0.288054 | 4_2:-19204303 | Msa0593260:CDS |
| TACTTTGTTGCATCCATTAG+AGG | 0.301618 | 4_2:+19204082 | None:intergenic |
| CAACTTAGTTCAACCTCTAA+TGG | 0.319722 | 4_2:-19204095 | Msa0593260:CDS |
| AAGAGTGAGCGGACTCTTAC+CGG | 0.332233 | 4_2:+19204196 | None:intergenic |
| ATTGATTTATCTGTGATTGA+TGG | 0.357832 | 4_2:-19204134 | Msa0593260:CDS |
| CCACCACTGGGTGTGGCCGC+TGG | 0.368182 | 4_2:+19204377 | None:intergenic |
| CAACTGCCGACCTCCACCAC+TGG | 0.374879 | 4_2:+19204364 | None:intergenic |
| TCCACCGTTAAGTGTGAATT+CGG | 0.380057 | 4_2:+19204172 | None:intergenic |
| GGTTGCACCTTCGACGGTTC+AGG | 0.394877 | 4_2:-19204272 | Msa0593260:CDS |
| GGCAATGGTAATTGTCAAAC+TGG | 0.406321 | 4_2:-19204251 | Msa0593260:CDS |
| CTTACCGAATTCACACTTAA+CGG | 0.429312 | 4_2:-19204176 | Msa0593260:CDS |
| GTCCTCAGTTGCAGCTTATC+CGG | 0.434820 | 4_2:-19204215 | Msa0593260:CDS |
| TTGGGTTGATGATAAGCATC+AGG | 0.436290 | 4_2:+19204035 | None:intergenic |
| GGTCGAATTTGGGGCCGAAC+TGG | 0.442440 | 4_2:-19204293 | Msa0593260:CDS |
| ACAAAAGACAACTTTGTAGT+TGG | 0.448816 | 4_2:+19203980 | None:intergenic |
| ATCCCAGCTGGAACTTCATC+AGG | 0.462218 | 4_2:-19204314 | Msa0593260:CDS |
| GAGGTTGAACTAAGTTGCAT+TGG | 0.462843 | 4_2:+19204101 | None:intergenic |
| GCCACACGGTGTAGCCGCAT+TGG | 0.474171 | 4_2:+19204399 | None:intergenic |
| CCGACCTCCACCACTGGGTG+TGG | 0.490136 | 4_2:+19204370 | None:intergenic |
| TGATATCTGCTCAGGCAGCT+AGG | 0.492068 | 4_2:-19204436 | Msa0593260:CDS |
| AACTGCCGACCTCCACCACT+GGG | 0.492264 | 4_2:+19204365 | None:intergenic |
| CCAGAGTCCATGTTTGACCT+TGG | 0.495410 | 4_2:+19204339 | None:intergenic |
| CGTCGAAGGTGCAACCAGTT+CGG | 0.498999 | 4_2:+19204279 | None:intergenic |
| CGACCTGATGAAGTTCCAGC+TGG | 0.502812 | 4_2:+19204311 | None:intergenic |
| ACTTTGTAGTTGGTACCACC+TGG | 0.508562 | 4_2:+19203990 | None:intergenic |
| CGAACTGGTTGCACCTTCGA+CGG | 0.509502 | 4_2:-19204278 | Msa0593260:CDS |
| TCTCTGCTTGATATCTGCTC+AGG | 0.510960 | 4_2:-19204444 | Msa0593260:CDS |
| GCGGCCACACCCAGTGGTGG+AGG | 0.514387 | 4_2:-19204374 | Msa0593260:CDS |
| GCAACAAAGTATTAAACTGC+GGG | 0.515893 | 4_2:-19204070 | Msa0593260:CDS |
| ACCTTCGACGGTTCAGGCAA+TGG | 0.516066 | 4_2:-19204266 | Msa0593260:CDS |
| GGGTGTGGCCGCTGGCCACA+CGG | 0.516945 | 4_2:+19204385 | None:intergenic |
| TGGACTCTGGACATCCCAGC+TGG | 0.517689 | 4_2:-19204326 | Msa0593260:CDS |
| CAGTGGTGGAGGTCGGCAGT+TGG | 0.546103 | 4_2:-19204363 | Msa0593260:CDS |
| CCAGCGGCCACACCCAGTGG+TGG | 0.568387 | 4_2:-19204377 | Msa0593260:CDS |
| CCAAGGTCAAACATGGACTC+TGG | 0.568915 | 4_2:-19204339 | Msa0593260:CDS |
| CGGCTACACCGTGTGGCCAG+CGG | 0.572344 | 4_2:-19204393 | Msa0593260:CDS |
| CCACACCCAGTGGTGGAGGT+CGG | 0.594695 | 4_2:-19204370 | Msa0593260:CDS |
| TACCGGATAAGCTGCAACTG+AGG | 0.596730 | 4_2:+19204213 | None:intergenic |
| ACCATTGCCTGAACCGTCGA+AGG | 0.597990 | 4_2:+19204265 | None:intergenic |
| TGGCCAGCGGCCACACCCAG+TGG | 0.600466 | 4_2:-19204380 | Msa0593260:CDS |
| GTTAAAACGAATACATGCCC+AGG | 0.604035 | 4_2:-19204008 | Msa0593260:CDS |
| AGTTGGACCAAGGTCAAACA+TGG | 0.621156 | 4_2:-19204346 | Msa0593260:CDS |
| ACTTCATCAGGTCGAATTTG+GGG | 0.621329 | 4_2:-19204302 | Msa0593260:CDS |
| ACCAATGCGGCTACACCGTG+TGG | 0.625115 | 4_2:-19204400 | Msa0593260:CDS |
| GGAGGTCGGCAGTTGGACCA+AGG | 0.633114 | 4_2:-19204356 | Msa0593260:CDS |
| GACCTGATGAAGTTCCAGCT+GGG | 0.635258 | 4_2:+19204312 | None:intergenic |
| GTGAATTCGGTAAGAGTGAG+CGG | 0.641384 | 4_2:+19204185 | None:intergenic |
| TGGGTTGATGATAAGCATCA+GGG | 0.651917 | 4_2:+19204036 | None:intergenic |
| TGCAACAAAGTATTAAACTG+CGG | 0.658121 | 4_2:-19204071 | Msa0593260:CDS |
| CTTTGTAGTTGGTACCACCT+GGG | 0.662098 | 4_2:+19203991 | None:intergenic |
| AATTGTCAAACTGGTGATTG+CGG | 0.670033 | 4_2:-19204242 | Msa0593260:CDS |
| ACCGAATTCACACTTAACGG+TGG | 0.677282 | 4_2:-19204173 | Msa0593260:CDS |
| TGTCAAACTGGTGATTGCGG+TGG | 0.712111 | 4_2:-19204239 | Msa0593260:CDS |
| CAACAAAGTATTAAACTGCG+GGG | 0.718105 | 4_2:-19204069 | Msa0593260:CDS |
| AAAACGAATACATGCCCAGG+TGG | 0.726701 | 4_2:-19204005 | Msa0593260:CDS |
| TTTGACATTGTAAACCAATG+CGG | 0.728342 | 4_2:-19204413 | Msa0593260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGATTTATCTGTGATTGA+TGG | - | chr4_2:19204322-19204341 | Msa0593260:CDS | 25.0% |
| !!! | GTATTCGTTTTAACATCATT+GGG | + | chr4_2:19204442-19204461 | None:intergenic | 25.0% |
| !!! | TGTATTCGTTTTAACATCAT+TGG | + | chr4_2:19204443-19204462 | None:intergenic | 25.0% |
| TTTGACATTGTAAACCAATG+CGG | - | chr4_2:19204043-19204062 | Msa0593260:CDS | 30.0% | |
| ! | TGCAACAAAGTATTAAACTG+CGG | - | chr4_2:19204385-19204404 | Msa0593260:CDS | 30.0% |
| ACAAAAGACAACTTTGTAGT+TGG | + | chr4_2:19204479-19204498 | None:intergenic | 30.0% | |
| AACTTCATCAGGTCGAATTT+GGG | - | chr4_2:19204153-19204172 | Msa0593260:CDS | 35.0% | |
| AATTGTCAAACTGGTGATTG+CGG | - | chr4_2:19204214-19204233 | Msa0593260:CDS | 35.0% | |
| CTTACCGAATTCACACTTAA+CGG | - | chr4_2:19204280-19204299 | Msa0593260:CDS | 35.0% | |
| ACTTAACGGTGGAAACAATT+TGG | - | chr4_2:19204294-19204313 | Msa0593260:CDS | 35.0% | |
| CAACTTAGTTCAACCTCTAA+TGG | - | chr4_2:19204361-19204380 | Msa0593260:CDS | 35.0% | |
| TACTTTGTTGCATCCATTAG+AGG | + | chr4_2:19204377-19204396 | None:intergenic | 35.0% | |
| ! | GCAACAAAGTATTAAACTGC+GGG | - | chr4_2:19204386-19204405 | Msa0593260:CDS | 35.0% |
| ! | CAACAAAGTATTAAACTGCG+GGG | - | chr4_2:19204387-19204406 | Msa0593260:CDS | 35.0% |
| GAACTTCATCAGGTCGAATT+TGG | - | chr4_2:19204152-19204171 | Msa0593260:CDS | 40.0% | |
| ACTTCATCAGGTCGAATTTG+GGG | - | chr4_2:19204154-19204173 | Msa0593260:CDS | 40.0% | |
| GGCAATGGTAATTGTCAAAC+TGG | - | chr4_2:19204205-19204224 | Msa0593260:CDS | 40.0% | |
| TCCACCGTTAAGTGTGAATT+CGG | + | chr4_2:19204287-19204306 | None:intergenic | 40.0% | |
| GAGGTTGAACTAAGTTGCAT+TGG | + | chr4_2:19204358-19204377 | None:intergenic | 40.0% | |
| !! | TGGGTTGATGATAAGCATCA+GGG | + | chr4_2:19204423-19204442 | None:intergenic | 40.0% |
| !! | TTGGGTTGATGATAAGCATC+AGG | + | chr4_2:19204424-19204443 | None:intergenic | 40.0% |
| GTTAAAACGAATACATGCCC+AGG | - | chr4_2:19204448-19204467 | Msa0593260:CDS | 40.0% | |
| TCTCTGCTTGATATCTGCTC+AGG | - | chr4_2:19204012-19204031 | Msa0593260:CDS | 45.0% | |
| AGTTGGACCAAGGTCAAACA+TGG | - | chr4_2:19204110-19204129 | Msa0593260:CDS | 45.0% | |
| GTGAATTCGGTAAGAGTGAG+CGG | + | chr4_2:19204274-19204293 | None:intergenic | 45.0% | |
| ACCGAATTCACACTTAACGG+TGG | - | chr4_2:19204283-19204302 | Msa0593260:CDS | 45.0% | |
| AAAACGAATACATGCCCAGG+TGG | - | chr4_2:19204451-19204470 | Msa0593260:CDS | 45.0% | |
| ! | CTTTGTAGTTGGTACCACCT+GGG | + | chr4_2:19204468-19204487 | None:intergenic | 45.0% |
| ! | ACTTTGTAGTTGGTACCACC+TGG | + | chr4_2:19204469-19204488 | None:intergenic | 45.0% |
| TGATATCTGCTCAGGCAGCT+AGG | - | chr4_2:19204020-19204039 | Msa0593260:CDS | 50.0% | |
| CCAGAGTCCATGTTTGACCT+TGG | + | chr4_2:19204120-19204139 | None:intergenic | 50.0% | |
| CCAAGGTCAAACATGGACTC+TGG | - | chr4_2:19204117-19204136 | Msa0593260:CDS | 50.0% | |
| ATCCCAGCTGGAACTTCATC+AGG | - | chr4_2:19204142-19204161 | Msa0593260:CDS | 50.0% | |
| GACCTGATGAAGTTCCAGCT+GGG | + | chr4_2:19204147-19204166 | None:intergenic | 50.0% | |
| TGTCAAACTGGTGATTGCGG+TGG | - | chr4_2:19204217-19204236 | Msa0593260:CDS | 50.0% | |
| GTCCTCAGTTGCAGCTTATC+CGG | - | chr4_2:19204241-19204260 | Msa0593260:CDS | 50.0% | |
| TACCGGATAAGCTGCAACTG+AGG | + | chr4_2:19204246-19204265 | None:intergenic | 50.0% | |
| ! | AAGAGTGAGCGGACTCTTAC+CGG | + | chr4_2:19204263-19204282 | None:intergenic | 50.0% |
| CGACCTGATGAAGTTCCAGC+TGG | + | chr4_2:19204148-19204167 | None:intergenic | 55.0% | |
| ! | CGTCGAAGGTGCAACCAGTT+CGG | + | chr4_2:19204180-19204199 | None:intergenic | 55.0% |
| CGAACTGGTTGCACCTTCGA+CGG | - | chr4_2:19204178-19204197 | Msa0593260:CDS | 55.0% | |
| ACCTTCGACGGTTCAGGCAA+TGG | - | chr4_2:19204190-19204209 | Msa0593260:CDS | 55.0% | |
| ACCATTGCCTGAACCGTCGA+AGG | + | chr4_2:19204194-19204213 | None:intergenic | 55.0% | |
| ACCAATGCGGCTACACCGTG+TGG | - | chr4_2:19204056-19204075 | Msa0593260:CDS | 60.0% | |
| AACTGCCGACCTCCACCACT+GGG | + | chr4_2:19204094-19204113 | None:intergenic | 60.0% | |
| TGGACTCTGGACATCCCAGC+TGG | - | chr4_2:19204130-19204149 | Msa0593260:CDS | 60.0% | |
| ! | GGTCGAATTTGGGGCCGAAC+TGG | - | chr4_2:19204163-19204182 | Msa0593260:CDS | 60.0% |
| GGTTGCACCTTCGACGGTTC+AGG | - | chr4_2:19204184-19204203 | Msa0593260:CDS | 60.0% | |
| GCCACACGGTGTAGCCGCAT+TGG | + | chr4_2:19204060-19204079 | None:intergenic | 65.0% | |
| ! | CCACACCCAGTGGTGGAGGT+CGG | - | chr4_2:19204086-19204105 | Msa0593260:CDS | 65.0% |
| CAACTGCCGACCTCCACCAC+TGG | + | chr4_2:19204095-19204114 | None:intergenic | 65.0% | |
| ! | CAGTGGTGGAGGTCGGCAGT+TGG | - | chr4_2:19204093-19204112 | Msa0593260:CDS | 65.0% |
| GGAGGTCGGCAGTTGGACCA+AGG | - | chr4_2:19204100-19204119 | Msa0593260:CDS | 65.0% | |
| CGGCTACACCGTGTGGCCAG+CGG | - | chr4_2:19204063-19204082 | Msa0593260:CDS | 70.0% | |
| CCGACCTCCACCACTGGGTG+TGG | + | chr4_2:19204089-19204108 | None:intergenic | 70.0% | |
| GGGTGTGGCCGCTGGCCACA+CGG | + | chr4_2:19204074-19204093 | None:intergenic | 75.0% | |
| TGGCCAGCGGCCACACCCAG+TGG | - | chr4_2:19204076-19204095 | Msa0593260:CDS | 75.0% | |
| CCACCACTGGGTGTGGCCGC+TGG | + | chr4_2:19204082-19204101 | None:intergenic | 75.0% | |
| CCAGCGGCCACACCCAGTGG+TGG | - | chr4_2:19204079-19204098 | Msa0593260:CDS | 75.0% | |
| GCGGCCACACCCAGTGGTGG+AGG | - | chr4_2:19204082-19204101 | Msa0593260:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 19203974 | 19204504 | 19203974 | ID=Msa0593260;Name=Msa0593260 |
| chr4_2 | mRNA | 19203974 | 19204504 | 19203974 | ID=Msa0593260-mRNA-1;Parent=Msa0593260;Name=Msa0593260-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|176 |
| chr4_2 | exon | 19203974 | 19204504 | 19203974 | ID=Msa0593260-mRNA-1:exon:5547;Parent=Msa0593260-mRNA-1 |
| chr4_2 | CDS | 19203974 | 19204504 | 19203974 | ID=Msa0593260-mRNA-1:cds;Parent=Msa0593260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
