Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0594020 | Msa0991640 | 0.955216 | 5.048476e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATGACCACAACATAAA+TGG | 0.158680 | 4_2:+21030675 | None:intergenic |
| CTTCAAGTGTTGGCAGAATT+TGG | 0.203480 | 4_2:-21031590 | Msa0594020:CDS |
| CTTGGACCAGTTTGACTATA+TGG | 0.216705 | 4_2:-21031888 | Msa0594020:CDS |
| CTGTTCTTTGGGCTGCGAAT+TGG | 0.268833 | 4_2:-21030828 | Msa0594020:intron |
| TGAAGAATGTTTCAATATAA+TGG | 0.310787 | 4_2:-21030874 | Msa0594020:three_prime_UTR |
| GGTGTTGGCTACCTTTCATT+TGG | 0.348160 | 4_2:-21031751 | Msa0594020:CDS |
| AATGCAAGGCGGCATACAAC+TGG | 0.398624 | 4_2:+21031779 | None:intergenic |
| TCCTTCCCATATAGTCAAAC+TGG | 0.400973 | 4_2:+21031882 | None:intergenic |
| TGCATCCTCAACTTTATAAT+CGG | 0.403704 | 4_2:+21030999 | None:intergenic |
| AAAATGACCACAACATAAAT+GGG | 0.432645 | 4_2:+21030676 | None:intergenic |
| TTGGACCAGTTTGACTATAT+GGG | 0.435854 | 4_2:-21031887 | Msa0594020:CDS |
| ATTATATTGAAACATTCTTC+AGG | 0.446517 | 4_2:+21030876 | None:intergenic |
| TTGAGGATGCATGCTGTTCA+TGG | 0.468492 | 4_2:-21030987 | Msa0594020:CDS |
| AACATAAATGGGCATTATCA+TGG | 0.478496 | 4_2:+21030687 | None:intergenic |
| GATAGTTGTATTAGTAGCTA+TGG | 0.491251 | 4_2:-21031931 | Msa0594020:CDS |
| TAAATTTAATGTGCTCTGTT+CGG | 0.497149 | 4_2:-21030960 | Msa0594020:three_prime_UTR |
| TGCCATGTTGTCGTTTATGC+GGG | 0.503536 | 4_2:-21031548 | Msa0594020:intron |
| GACTAAATACACCGTTGTAA+AGG | 0.503824 | 4_2:-21030900 | Msa0594020:three_prime_UTR |
| TCTGCCAACACTTGAAGTCT+AGG | 0.508004 | 4_2:+21031596 | None:intergenic |
| TGCTCTGTTCGGTTGTATGA+AGG | 0.527992 | 4_2:-21030949 | Msa0594020:three_prime_UTR |
| ATTCAATTAAGACATGGAAG+AGG | 0.561650 | 4_2:-21033898 | None:intergenic |
| TTTGCAGGTTTCTCTTTATG+GGG | 0.561779 | 4_2:-21031953 | Msa0594020:intron |
| CCTCAACTTTATAATCGGAA+TGG | 0.576798 | 4_2:+21031004 | None:intergenic |
| CTGCCATGTTGTCGTTTATG+CGG | 0.579046 | 4_2:-21031549 | Msa0594020:CDS |
| CCATTCCGATTATAAAGTTG+AGG | 0.581957 | 4_2:-21031004 | Msa0594020:CDS |
| ACTGCAGCCGCACAAACAGA+TGG | 0.587248 | 4_2:+21031724 | None:intergenic |
| GAGCCAAACAAAATAGAAGC+AGG | 0.588448 | 4_2:+21031637 | None:intergenic |
| GAAATCTTTGCTGCATGTAG+TGG | 0.596175 | 4_2:+21030648 | None:intergenic |
| CAGATGGAAAACCAAATGAA+AGG | 0.603397 | 4_2:+21031740 | None:intergenic |
| GATAATGCCCATTTATGTTG+TGG | 0.604578 | 4_2:-21030683 | Msa0594020:three_prime_UTR |
| CATATAGTCAAACTGGTCCA+AGG | 0.607533 | 4_2:+21031889 | None:intergenic |
| AAATCTTTGCTGCATGTAGT+GGG | 0.620560 | 4_2:+21030649 | None:intergenic |
| ACCAGTTTGACTATATGGGA+AGG | 0.624750 | 4_2:-21031883 | Msa0594020:CDS |
| ACAGCCTAGACTTCAAGTGT+TGG | 0.658521 | 4_2:-21031600 | Msa0594020:CDS |
| GACCCGCATAAACGACAACA+TGG | 0.669197 | 4_2:+21031546 | None:intergenic |
| ATTCTTCAGGACCTTTACAA+CGG | 0.672771 | 4_2:+21030889 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTCAAAAACTTAAA+AGG | + | chr4_2:21030905-21030924 | None:intergenic | 10.0% |
| !!! | GCTTTTTTCAAAAATTATAT+GGG | - | chr4_2:21030756-21030775 | Msa0594020:three_prime_UTR | 15.0% |
| !! | CTATATTTGAAAAGAAAATA+TGG | - | chr4_2:21031419-21031438 | Msa0594020:intron | 15.0% |
| !! | ATGAAATTAATATTAAAGAG+AGG | + | chr4_2:21031828-21031847 | None:intergenic | 15.0% |
| !! | TCTTTAATATTAATTTCATG+TGG | - | chr4_2:21031829-21031848 | Msa0594020:CDS | 15.0% |
| !!! | ATTGAATATGAAGTTTTTAT+GGG | - | chr4_2:21031930-21031949 | Msa0594020:CDS | 15.0% |
| !!! | CTATTACTTTAAAATTAATG+AGG | + | chr4_2:21032242-21032261 | None:intergenic | 15.0% |
| !!! | ATTAATTTTAAAGTAATAGC+AGG | - | chr4_2:21032243-21032262 | Msa0594020:intron | 15.0% |
| !! | TATGAATATGAAAAATTGAA+TGG | + | chr4_2:21032400-21032419 | None:intergenic | 15.0% |
| !! | TATTAAAACATATCATGAAT+CGG | + | chr4_2:21032483-21032502 | None:intergenic | 15.0% |
| !! | ATAATATGTAAATATTTGTG+AGG | + | chr4_2:21033097-21033116 | None:intergenic | 15.0% |
| !! | TATTTACATATTATTATAGG+TGG | - | chr4_2:21033103-21033122 | Msa0594020:intron | 15.0% |
| !! | AAGAAAAACAGATAAAATAA+TGG | + | chr4_2:21033301-21033320 | None:intergenic | 15.0% |
| !!! | GGCTTTTTTCAAAAATTATA+TGG | - | chr4_2:21030755-21030774 | Msa0594020:three_prime_UTR | 20.0% |
| !!! | ATATGACAATTAGTTTTCAA+AGG | - | chr4_2:21030960-21030979 | Msa0594020:three_prime_UTR | 20.0% |
| !! | TACAATAATGAATAAGTTTG+TGG | - | chr4_2:21031219-21031238 | Msa0594020:intron | 20.0% |
| !!! | GCAAAGGAAAATTTTAAAAT+GGG | + | chr4_2:21031273-21031292 | None:intergenic | 20.0% |
| !!! | AGCAAAGGAAAATTTTAAAA+TGG | + | chr4_2:21031274-21031293 | None:intergenic | 20.0% |
| !! | AGTGATAGAAAAAGAATAAA+TGG | - | chr4_2:21031694-21031713 | Msa0594020:CDS | 20.0% |
| !!! | TAAATGGATCATAATTTTTC+TGG | - | chr4_2:21031710-21031729 | Msa0594020:CDS | 20.0% |
| !! | AAATTAATATTAAAGAGAGG+TGG | + | chr4_2:21031825-21031844 | None:intergenic | 20.0% |
| !!! | GATTGAATATGAAGTTTTTA+TGG | - | chr4_2:21031929-21031948 | Msa0594020:CDS | 20.0% |
| !!! | GTTATGAATTTTTTATGAAG+TGG | + | chr4_2:21032107-21032126 | None:intergenic | 20.0% |
| !!! | TGCATATATGACTTTTTTTA+AGG | + | chr4_2:21032177-21032196 | None:intergenic | 20.0% |
| !! | TGAATGGTAAAATTATGAAA+TGG | + | chr4_2:21032384-21032403 | None:intergenic | 20.0% |
| !! | AGTTAATTAATATAGGCAAA+TGG | - | chr4_2:21033157-21033176 | Msa0594020:intron | 20.0% |
| !! | GTTAATTAATATAGGCAAAT+GGG | - | chr4_2:21033158-21033177 | Msa0594020:intron | 20.0% |
| !! | TTAATTAATATAGGCAAATG+GGG | - | chr4_2:21033159-21033178 | Msa0594020:intron | 20.0% |
| !! | ATTATATTGAAACATTCTTC+AGG | + | chr4_2:21033654-21033673 | None:intergenic | 20.0% |
| !! | TGAAGAATGTTTCAATATAA+TGG | - | chr4_2:21033653-21033672 | Msa0594020:intron | 20.0% |
| ! | CAGTAGCTTCATTAAAAAAA+AGG | + | chr4_2:21030686-21030705 | None:intergenic | 25.0% |
| ! | AGTTGATTAAGAAGCAAATT+AGG | - | chr4_2:21030716-21030735 | Msa0594020:three_prime_UTR | 25.0% |
| ! | GTTGATTAAGAAGCAAATTA+GGG | - | chr4_2:21030717-21030736 | Msa0594020:three_prime_UTR | 25.0% |
| ! | TTGATTAAGAAGCAAATTAG+GGG | - | chr4_2:21030718-21030737 | Msa0594020:three_prime_UTR | 25.0% |
| !! | GTAATTTTTCCATTTCACAT+TGG | - | chr4_2:21031100-21031119 | Msa0594020:intron | 25.0% |
| ! | AAAATCATGTAGTGATTACA+TGG | - | chr4_2:21031562-21031581 | Msa0594020:CDS | 25.0% |
| ! | AGGCAAGAAAGAAATATAAA+AGG | - | chr4_2:21031644-21031663 | Msa0594020:CDS | 25.0% |
| ! | AATGAAACCCAAAACAAAAT+TGG | + | chr4_2:21031856-21031875 | None:intergenic | 25.0% |
| !! | AATCAACAAAGGTATGAAAT+GGG | + | chr4_2:21032002-21032021 | None:intergenic | 25.0% |
| !! | TAATCAACAAAGGTATGAAA+TGG | + | chr4_2:21032003-21032022 | None:intergenic | 25.0% |
| !! | TACCTTTGTTGATTATATCT+AGG | - | chr4_2:21032008-21032027 | Msa0594020:intron | 25.0% |
| ! | ATCCTAGATATAATCAACAA+AGG | + | chr4_2:21032013-21032032 | None:intergenic | 25.0% |
| !! | TCTAGGATTTAAAATGTAAG+TGG | - | chr4_2:21032025-21032044 | Msa0594020:intron | 25.0% |
| !!! | TAAAATGTAAGTGGATTACA+TGG | - | chr4_2:21032034-21032053 | Msa0594020:intron | 25.0% |
| !!! | ACTTTTTTTAAGGTTGTCTT+AGG | + | chr4_2:21032167-21032186 | None:intergenic | 25.0% |
| ! | TTTAAAGAGCAACTTGTAAT+CGG | + | chr4_2:21032445-21032464 | None:intergenic | 25.0% |
| !!! | TATGGTTGTTATTTTATCGT+TGG | - | chr4_2:21032614-21032633 | Msa0594020:intron | 25.0% |
| !! | TTTTACAGAGTTATCAATTC+AGG | - | chr4_2:21032831-21032850 | Msa0594020:intron | 25.0% |
| ! | TGGTTGAAATACATATATAG+TGG | - | chr4_2:21033123-21033142 | Msa0594020:intron | 25.0% |
| ! | GGTTGAAATACATATATAGT+GGG | - | chr4_2:21033124-21033143 | Msa0594020:intron | 25.0% |
| !! | AAATACATATATAGTGGGAA+TGG | - | chr4_2:21033129-21033148 | Msa0594020:intron | 25.0% |
| ! | GGAAGAGAGTTAATTAATAT+AGG | - | chr4_2:21033150-21033169 | Msa0594020:intron | 25.0% |
| ! | TTGTTATCCTTATGTAATTC+TGG | - | chr4_2:21033476-21033495 | Msa0594020:intron | 25.0% |
| ! | TAAACATCCAGAATTACATA+AGG | + | chr4_2:21033486-21033505 | None:intergenic | 25.0% |
| ! | TAAATTTAATGTGCTCTGTT+CGG | - | chr4_2:21033567-21033586 | Msa0594020:intron | 25.0% |
| !! | TATTTTGTACTGTGATGTAA+TGG | - | chr4_2:21033755-21033774 | Msa0594020:intron | 25.0% |
| ! | AAAATGACCACAACATAAAT+GGG | + | chr4_2:21033854-21033873 | None:intergenic | 25.0% |
| ! | TAAAATGACCACAACATAAA+TGG | + | chr4_2:21033855-21033874 | None:intergenic | 25.0% |
| TTACCAAAGAGATAACGTAT+CGG | + | chr4_2:21030848-21030867 | None:intergenic | 30.0% | |
| TACGTTATCTCTTTGGTAAA+TGG | - | chr4_2:21030849-21030868 | Msa0594020:intron | 30.0% | |
| TTATCTCTTTGGTAAATGGT+AGG | - | chr4_2:21030853-21030872 | Msa0594020:intron | 30.0% | |
| !!! | AATTAGTTTTCAAAGGTTGC+TGG | - | chr4_2:21030967-21030986 | Msa0594020:exon | 30.0% |
| AATCAACAACCAATGTGAAA+TGG | + | chr4_2:21031112-21031131 | None:intergenic | 30.0% | |
| !!! | TGTTGATTTGCAGCTTTTAT+TGG | - | chr4_2:21031124-21031143 | Msa0594020:intron | 30.0% |
| GTTGTATCGTATAGTGTAAA+TGG | + | chr4_2:21031153-21031172 | None:intergenic | 30.0% | |
| AATAGAACAGTGTAAAGCAA+AGG | + | chr4_2:21031289-21031308 | None:intergenic | 30.0% | |
| CACAAAGAGTTAATCGAAAT+TGG | - | chr4_2:21031492-21031511 | Msa0594020:intron | 30.0% | |
| TAGCTGAAATCATTTCATGA+GGG | + | chr4_2:21031759-21031778 | None:intergenic | 30.0% | |
| TTAGCTGAAATCATTTCATG+AGG | + | chr4_2:21031760-21031779 | None:intergenic | 30.0% | |
| CATTATGAATGTTCATGTAC+TGG | - | chr4_2:21031781-21031800 | Msa0594020:CDS | 30.0% | |
| !!! | ATGTGGTCCAATTTTGTTTT+GGG | - | chr4_2:21031846-21031865 | Msa0594020:CDS | 30.0% |
| ! | ATCAACAAAGGTATGAAATG+GGG | + | chr4_2:21032001-21032020 | None:intergenic | 30.0% |
| TAGATGGTTCCTATTTCATT+TGG | + | chr4_2:21032271-21032290 | None:intergenic | 30.0% | |
| TATCCATATACACTGCAATT+TGG | + | chr4_2:21032300-21032319 | None:intergenic | 30.0% | |
| ATCGCACAAAATCAAAATGT+AGG | + | chr4_2:21032352-21032371 | None:intergenic | 30.0% | |
| ! | ATTTTCCTGCATAATTTTGC+AGG | - | chr4_2:21032559-21032578 | Msa0594020:intron | 30.0% |
| ! | ATTTTGCAGGTTTCTCTTTA+TGG | - | chr4_2:21032572-21032591 | Msa0594020:intron | 30.0% |
| ! | TTTTGCAGGTTTCTCTTTAT+GGG | - | chr4_2:21032573-21032592 | Msa0594020:intron | 30.0% |
| GATAGTTGTATTAGTAGCTA+TGG | - | chr4_2:21032596-21032615 | Msa0594020:intron | 30.0% | |
| AATGAATGTCAATCAAACAG+TGG | + | chr4_2:21033233-21033252 | None:intergenic | 30.0% | |
| TGTCTCAACTCTACTTAAAA+TGG | - | chr4_2:21033371-21033390 | Msa0594020:intron | 30.0% | |
| CTTGACAACTATAAAGAACA+AGG | - | chr4_2:21033409-21033428 | Msa0594020:intron | 30.0% | |
| ACATAAGGATAACAATTTGC+AGG | + | chr4_2:21033471-21033490 | None:intergenic | 30.0% | |
| TGTTTAATATCTGTGTTTGC+AGG | - | chr4_2:21033500-21033519 | Msa0594020:intron | 30.0% | |
| TGCATCCTCAACTTTATAAT+CGG | + | chr4_2:21033531-21033550 | None:intergenic | 30.0% | |
| !! | GCTACTTTATTTGTGTTTTG+TGG | - | chr4_2:21033782-21033801 | Msa0594020:intron | 30.0% |
| AACATAAATGGGCATTATCA+TGG | + | chr4_2:21033843-21033862 | None:intergenic | 30.0% | |
| AAGGTTGCTGGAATTTGATT+TGG | - | chr4_2:21030979-21030998 | Msa0594020:exon | 35.0% | |
| TCTTTCATATGTAAGCCTCT+TGG | - | chr4_2:21031311-21031330 | Msa0594020:intron | 35.0% | |
| TCATGAGTCAATCTAAATGC+AGG | - | chr4_2:21031594-21031613 | Msa0594020:CDS | 35.0% | |
| TACATCTCACACTCTAACTT+TGG | + | chr4_2:21031623-21031642 | None:intergenic | 35.0% | |
| AGTTAGAGTGTGAGATGTAT+AGG | - | chr4_2:21031624-21031643 | Msa0594020:CDS | 35.0% | |
| AGCTGAAATCATTTCATGAG+GGG | + | chr4_2:21031758-21031777 | None:intergenic | 35.0% | |
| !! | CATGTGGTCCAATTTTGTTT+TGG | - | chr4_2:21031845-21031864 | Msa0594020:CDS | 35.0% |
| TTATAACCATTTCCAAGTGC+AGG | + | chr4_2:21031886-21031905 | None:intergenic | 35.0% | |
| ! | TCAACAAAGGTATGAAATGG+GGG | + | chr4_2:21032000-21032019 | None:intergenic | 35.0% |
| TAGCAGGTTCCAAATGAAAT+AGG | - | chr4_2:21032259-21032278 | Msa0594020:intron | 35.0% | |
| ATGAAATAGGAACCATCTAC+AGG | - | chr4_2:21032272-21032291 | Msa0594020:intron | 35.0% | |
| GTTCCAAATTGCAGTGTATA+TGG | - | chr4_2:21032294-21032313 | Msa0594020:intron | 35.0% | |
| AGAAACCTGCAAAATTATGC+AGG | + | chr4_2:21032567-21032586 | None:intergenic | 35.0% | |
| TTTGCAGGTTTCTCTTTATG+GGG | - | chr4_2:21032574-21032593 | Msa0594020:intron | 35.0% | |
| !! | GTTATTTTATCGTTGGTCCT+TGG | - | chr4_2:21032621-21032640 | Msa0594020:intron | 35.0% |
| TTGGACCAGTTTGACTATAT+GGG | - | chr4_2:21032640-21032659 | Msa0594020:intron | 35.0% | |
| !!! | AGGAGATGAGTTTAGTTTTG+AGG | - | chr4_2:21032664-21032683 | Msa0594020:intron | 35.0% |
| !!! | TAGTTTTGAGGAATTTCGAG+CGG | - | chr4_2:21032676-21032695 | Msa0594020:intron | 35.0% |
| CAGATGGAAAACCAAATGAA+AGG | + | chr4_2:21032790-21032809 | None:intergenic | 35.0% | |
| ! | AGTCCTGCTTCTATTTTGTT+TGG | - | chr4_2:21032887-21032906 | Msa0594020:intron | 35.0% |
| !!! | TGTTGGCAGAATTTGGTTTT+TGG | - | chr4_2:21032944-21032963 | Msa0594020:intron | 35.0% |
| TCAACTCTACTTAAAATGGC+AGG | - | chr4_2:21033375-21033394 | Msa0594020:intron | 35.0% | |
| CCTCAACTTTATAATCGGAA+TGG | + | chr4_2:21033526-21033545 | None:intergenic | 35.0% | |
| CCATTCCGATTATAAAGTTG+AGG | - | chr4_2:21033523-21033542 | Msa0594020:intron | 35.0% | |
| GACTAAATACACCGTTGTAA+AGG | - | chr4_2:21033627-21033646 | Msa0594020:intron | 35.0% | |
| ATTCTTCAGGACCTTTACAA+CGG | + | chr4_2:21033641-21033660 | None:intergenic | 35.0% | |
| TGCTGTTATTCTCTGTTCTT+TGG | - | chr4_2:21033687-21033706 | Msa0594020:intron | 35.0% | |
| GCTGTTATTCTCTGTTCTTT+GGG | - | chr4_2:21033688-21033707 | Msa0594020:intron | 35.0% | |
| GATAATGCCCATTTATGTTG+TGG | - | chr4_2:21033844-21033863 | Msa0594020:intron | 35.0% | |
| AAATCTTTGCTGCATGTAGT+GGG | + | chr4_2:21033881-21033900 | None:intergenic | 35.0% | |
| !! | ATTAGGGGCATTTGATTGCT+AGG | - | chr4_2:21030733-21030752 | Msa0594020:three_prime_UTR | 40.0% |
| !! | TTAGGGGCATTTGATTGCTA+GGG | - | chr4_2:21030734-21030753 | Msa0594020:three_prime_UTR | 40.0% |
| ! | AAGAGATAACGTATCGGTGT+CGG | + | chr4_2:21030842-21030861 | None:intergenic | 40.0% |
| ACACCGATACGTTATCTCTT+TGG | - | chr4_2:21030842-21030861 | Msa0594020:intron | 40.0% | |
| TTCATATGTAAGCCTCTTGG+TGG | - | chr4_2:21031314-21031333 | Msa0594020:intron | 40.0% | |
| GGTGGTTAGTAGAGGAATAT+TGG | - | chr4_2:21031332-21031351 | Msa0594020:intron | 40.0% | |
| GGAAAGAGCAACAAGAGATT+TGG | - | chr4_2:21031665-21031684 | Msa0594020:CDS | 40.0% | |
| !! | TGTACTGGTACCTTTTCCTT+TGG | - | chr4_2:21031796-21031815 | Msa0594020:CDS | 40.0% |
| TAAAGAGAGGTGGAATCCAA+AGG | + | chr4_2:21031815-21031834 | None:intergenic | 40.0% | |
| ! | TGCAATTTGGAACCTGTAGA+TGG | + | chr4_2:21032287-21032306 | None:intergenic | 40.0% |
| CATATAGTCAAACTGGTCCA+AGG | + | chr4_2:21032641-21032660 | None:intergenic | 40.0% | |
| CTTGGACCAGTTTGACTATA+TGG | - | chr4_2:21032639-21032658 | Msa0594020:intron | 40.0% | |
| ACCAGTTTGACTATATGGGA+AGG | - | chr4_2:21032644-21032663 | Msa0594020:intron | 40.0% | |
| TCCTTCCCATATAGTCAAAC+TGG | + | chr4_2:21032648-21032667 | None:intergenic | 40.0% | |
| !!! | TATGCCGCCTTGCATTTTTT+GGG | - | chr4_2:21032755-21032774 | Msa0594020:intron | 40.0% |
| AACACCCAAAAAATGCAAGG+CGG | + | chr4_2:21032762-21032781 | None:intergenic | 40.0% | |
| ! | TGGTTTTCCATCTGTTTGTG+CGG | - | chr4_2:21032796-21032815 | Msa0594020:intron | 40.0% |
| GAGCCAAACAAAATAGAAGC+AGG | + | chr4_2:21032893-21032912 | None:intergenic | 40.0% | |
| !! | GCTTCTATTTTGTTTGGCTC+TGG | - | chr4_2:21032893-21032912 | Msa0594020:intron | 40.0% |
| !! | CTTCAAGTGTTGGCAGAATT+TGG | - | chr4_2:21032937-21032956 | Msa0594020:intron | 40.0% |
| GTAGTGTACCTTCACAGAAT+TGG | + | chr4_2:21033019-21033038 | None:intergenic | 40.0% | |
| AGGCAAATGGGGAAAATTTG+AGG | - | chr4_2:21033170-21033189 | Msa0594020:intron | 40.0% | |
| GAAATCTTTGCTGCATGTAG+TGG | + | chr4_2:21033882-21033901 | None:intergenic | 40.0% | |
| ! | AGAGATAACGTATCGGTGTC+GGG | + | chr4_2:21030841-21030860 | None:intergenic | 45.0% |
| TTCCTCTACTAACCACCAAG+AGG | + | chr4_2:21031329-21031348 | None:intergenic | 45.0% | |
| GAGGTGGAATCCAAAGGAAA+AGG | + | chr4_2:21031809-21031828 | None:intergenic | 45.0% | |
| !!! | GTATGCCGCCTTGCATTTTT+TGG | - | chr4_2:21032754-21032773 | Msa0594020:intron | 45.0% |
| !!! | GCCTTGCATTTTTTGGGTGT+TGG | - | chr4_2:21032761-21032780 | Msa0594020:intron | 45.0% |
| GCCAACACCCAAAAAATGCA+AGG | + | chr4_2:21032765-21032784 | None:intergenic | 45.0% | |
| !! | GGTGTTGGCTACCTTTCATT+TGG | - | chr4_2:21032776-21032795 | Msa0594020:intron | 45.0% |
| ACAGCCTAGACTTCAAGTGT+TGG | - | chr4_2:21032927-21032946 | Msa0594020:intron | 45.0% | |
| TCTGCCAACACTTGAAGTCT+AGG | + | chr4_2:21032934-21032953 | None:intergenic | 45.0% | |
| ! | CTGCCATGTTGTCGTTTATG+CGG | - | chr4_2:21032978-21032997 | Msa0594020:intron | 45.0% |
| ! | TGCCATGTTGTCGTTTATGC+GGG | - | chr4_2:21032979-21032998 | Msa0594020:intron | 45.0% |
| ACTTTCCGCCAATTCTGTGA+AGG | - | chr4_2:21033008-21033027 | Msa0594020:intron | 45.0% | |
| GTGTACCTTCACAGAATTGG+CGG | + | chr4_2:21033016-21033035 | None:intergenic | 45.0% | |
| TTGAGGATGCATGCTGTTCA+TGG | - | chr4_2:21033540-21033559 | Msa0594020:intron | 45.0% | |
| TGCTCTGTTCGGTTGTATGA+AGG | - | chr4_2:21033578-21033597 | Msa0594020:intron | 45.0% | |
| !!! | AATTTTTCATATTTATAATT+TGG | - | chr4_2:21032522-21032541 | Msa0594020:intron | 5.0% |
| !! | AAATATTTACATATTATTAT+AGG | - | chr4_2:21033100-21033119 | Msa0594020:intron | 5.0% |
| !! | ATAACGTATCGGTGTCGGGT+TGG | + | chr4_2:21030837-21030856 | None:intergenic | 50.0% |
| ! | AGCCTCTTGGTGGTTAGTAG+AGG | - | chr4_2:21031324-21031343 | Msa0594020:intron | 50.0% |
| TCATTGCTACGTCCTGCACT+TGG | - | chr4_2:21031871-21031890 | Msa0594020:CDS | 50.0% | |
| CTACGTCCTGCACTTGGAAA+TGG | - | chr4_2:21031877-21031896 | Msa0594020:CDS | 50.0% | |
| AATGCAAGGCGGCATACAAC+TGG | + | chr4_2:21032751-21032770 | None:intergenic | 50.0% | |
| GACCCGCATAAACGACAACA+TGG | + | chr4_2:21032984-21033003 | None:intergenic | 50.0% | |
| CTGTTCTTTGGGCTGCGAAT+TGG | - | chr4_2:21033699-21033718 | Msa0594020:intron | 50.0% | |
| !! | TCGGTGTCGGGTTGGATTTG+TGG | + | chr4_2:21030829-21030848 | None:intergenic | 55.0% |
| ACTGCAGCCGCACAAACAGA+TGG | + | chr4_2:21032806-21032825 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 21030642 | 21033907 | 21030642 | ID=Msa0594020;Name=Msa0594020 |
| chr4_2 | mRNA | 21030642 | 21033907 | 21030642 | ID=Msa0594020-mRNA-1;Parent=Msa0594020;Name=Msa0594020-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0.33|0.5|1|0.66|0.5|4|318|158 |
| chr4_2 | exon | 21030642 | 21030840 | 21030642 | ID=Msa0594020-mRNA-1:exon:5897;Parent=Msa0594020-mRNA-1 |
| chr4_2 | exon | 21030861 | 21031027 | 21030861 | ID=Msa0594020-mRNA-1:exon:5896;Parent=Msa0594020-mRNA-1 |
| chr4_2 | exon | 21031549 | 21031968 | 21031549 | ID=Msa0594020-mRNA-1:exon:5895;Parent=Msa0594020-mRNA-1 |
| chr4_2 | exon | 21033899 | 21033907 | 21033899 | ID=Msa0594020-mRNA-1:exon:5894;Parent=Msa0594020-mRNA-1 |
| chr4_2 | CDS | 21033899 | 21033907 | 21033899 | ID=Msa0594020-mRNA-1:cds;Parent=Msa0594020-mRNA-1 |
| chr4_2 | CDS | 21031549 | 21031968 | 21031549 | ID=Msa0594020-mRNA-1:cds;Parent=Msa0594020-mRNA-1 |
| chr4_2 | CDS | 21030980 | 21031027 | 21030980 | ID=Msa0594020-mRNA-1:cds;Parent=Msa0594020-mRNA-1 |
| chr4_2 | three_prime_UTR | 21030861 | 21030979 | 21030861 | ID=Msa0594020-mRNA-1:three_prime_utr;Parent=Msa0594020-mRNA-1 |
| chr4_2 | three_prime_UTR | 21030642 | 21030840 | 21030642 | ID=Msa0594020-mRNA-1:three_prime_utr;Parent=Msa0594020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
