Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220580 | Msa0991640 | 0.804817 | 1.800316e-49 | -8.615850e-47 |
| Msa0991640 | Msa1000860 | 0.821293 | 4.361979e-53 | -8.615850e-47 |
| Msa0594020 | Msa0991640 | 0.955216 | 5.048476e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATGACCACAACATAAA+TGG | 0.158680 | 6_4:+57257135 | None:intergenic |
| CTTCAAGTGTTGGCAGAATT+TGG | 0.203480 | 6_4:-57258050 | Msa0991640:CDS |
| CTTGGACCAGTTTGACTATA+TGG | 0.216705 | 6_4:-57258348 | Msa0991640:CDS |
| CTGTTCTTTGGGCTGCGAAT+TGG | 0.268833 | 6_4:-57257288 | Msa0991640:intron |
| TGAAGAATGTTTCAATATAA+TGG | 0.310787 | 6_4:-57257334 | Msa0991640:three_prime_UTR |
| GGTGTTGGCTACCTTTCATT+TGG | 0.348160 | 6_4:-57258211 | Msa0991640:CDS |
| AATGCAAGGCGGCATACAAC+TGG | 0.398624 | 6_4:+57258239 | None:intergenic |
| TCCTTCCCATATAGTCAAAC+TGG | 0.400973 | 6_4:+57258342 | None:intergenic |
| TGCATCCTCAACTTTATAAT+CGG | 0.403704 | 6_4:+57257459 | None:intergenic |
| AAAATGACCACAACATAAAT+GGG | 0.432645 | 6_4:+57257136 | None:intergenic |
| TTGGACCAGTTTGACTATAT+GGG | 0.435854 | 6_4:-57258347 | Msa0991640:CDS |
| ATTATATTGAAACATTCTTC+AGG | 0.446517 | 6_4:+57257336 | None:intergenic |
| TTGAGGATGCATGCTGTTCA+TGG | 0.468492 | 6_4:-57257447 | Msa0991640:CDS |
| AACATAAATGGGCATTATCA+TGG | 0.478496 | 6_4:+57257147 | None:intergenic |
| GATAGTTGTATTAGTAGCTA+TGG | 0.491251 | 6_4:-57258391 | Msa0991640:CDS |
| TAAATTTAATGTGCTCTGTT+CGG | 0.497149 | 6_4:-57257420 | Msa0991640:three_prime_UTR |
| TGCCATGTTGTCGTTTATGC+GGG | 0.503536 | 6_4:-57258008 | Msa0991640:intron |
| GACTAAATACACCGTTGTAA+AGG | 0.503824 | 6_4:-57257360 | Msa0991640:three_prime_UTR |
| TCTGCCAACACTTGAAGTCT+AGG | 0.508004 | 6_4:+57258056 | None:intergenic |
| TGCTCTGTTCGGTTGTATGA+AGG | 0.527992 | 6_4:-57257409 | Msa0991640:three_prime_UTR |
| ATTCAATTAAGACATGGAAG+AGG | 0.561650 | 6_4:-57260351 | None:intergenic |
| TTTGCAGGTTTCTCTTTATG+GGG | 0.561779 | 6_4:-57258413 | Msa0991640:intron |
| CCTCAACTTTATAATCGGAA+TGG | 0.576798 | 6_4:+57257464 | None:intergenic |
| CTGCCATGTTGTCGTTTATG+CGG | 0.579046 | 6_4:-57258009 | Msa0991640:CDS |
| CCATTCCGATTATAAAGTTG+AGG | 0.581957 | 6_4:-57257464 | Msa0991640:CDS |
| ACTGCAGCCGCACAAACAGA+TGG | 0.587248 | 6_4:+57258184 | None:intergenic |
| GAGCCAAACAAAATAGAAGC+AGG | 0.588448 | 6_4:+57258097 | None:intergenic |
| GAAATCTTTGCTGCATGTAG+TGG | 0.596175 | 6_4:+57257108 | None:intergenic |
| CAGATGGAAAACCAAATGAA+AGG | 0.603397 | 6_4:+57258200 | None:intergenic |
| GATAATGCCCATTTATGTTG+TGG | 0.604578 | 6_4:-57257143 | Msa0991640:three_prime_UTR |
| CATATAGTCAAACTGGTCCA+AGG | 0.607533 | 6_4:+57258349 | None:intergenic |
| AAATCTTTGCTGCATGTAGT+GGG | 0.620560 | 6_4:+57257109 | None:intergenic |
| ACCAGTTTGACTATATGGGA+AGG | 0.624750 | 6_4:-57258343 | Msa0991640:CDS |
| ACAGCCTAGACTTCAAGTGT+TGG | 0.658521 | 6_4:-57258060 | Msa0991640:CDS |
| GACCCGCATAAACGACAACA+TGG | 0.669197 | 6_4:+57258006 | None:intergenic |
| ATTCTTCAGGACCTTTACAA+CGG | 0.672771 | 6_4:+57257349 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTCAAAAACTTAAA+AGG | + | chr6_4:57257365-57257384 | None:intergenic | 10.0% |
| !!! | GCTTTTTTCAAAAATTATAT+GGG | - | chr6_4:57257216-57257235 | Msa0991640:three_prime_UTR | 15.0% |
| !! | CTATATTTGAAAAGAAAATA+TGG | - | chr6_4:57257879-57257898 | Msa0991640:intron | 15.0% |
| !!! | ATTGAATATGAAGTTTTTAT+GGG | - | chr6_4:57258383-57258402 | Msa0991640:CDS | 15.0% |
| !!! | CTATTACTTTAAAATTAATG+AGG | + | chr6_4:57258695-57258714 | None:intergenic | 15.0% |
| !!! | ATTAATTTTAAAGTAATAGC+AGG | - | chr6_4:57258696-57258715 | Msa0991640:intron | 15.0% |
| !! | TATGAATATGAAAAATTGAA+TGG | + | chr6_4:57258853-57258872 | None:intergenic | 15.0% |
| !! | TATTAAAACATATCATGAAT+CGG | + | chr6_4:57258936-57258955 | None:intergenic | 15.0% |
| !! | ATAATATGTAAATATTTGTG+AGG | + | chr6_4:57259550-57259569 | None:intergenic | 15.0% |
| !! | TATTTACATATTATTATAGG+TGG | - | chr6_4:57259556-57259575 | Msa0991640:intron | 15.0% |
| !! | AAGAAAAACAGATAAAATAA+TGG | + | chr6_4:57259754-57259773 | None:intergenic | 15.0% |
| !!! | GGCTTTTTTCAAAAATTATA+TGG | - | chr6_4:57257215-57257234 | Msa0991640:three_prime_UTR | 20.0% |
| !!! | ATATGACAATTAGTTTTCAA+AGG | - | chr6_4:57257420-57257439 | Msa0991640:three_prime_UTR | 20.0% |
| !! | TACAATAATGAATAAGTTTG+TGG | - | chr6_4:57257679-57257698 | Msa0991640:intron | 20.0% |
| !!! | GCAAAGGAAAATTTTAAAAT+GGG | + | chr6_4:57257733-57257752 | None:intergenic | 20.0% |
| !!! | AGCAAAGGAAAATTTTAAAA+TGG | + | chr6_4:57257734-57257753 | None:intergenic | 20.0% |
| !! | AGGTAAGAAAGAAATATAAA+AGG | - | chr6_4:57258104-57258123 | Msa0991640:CDS | 20.0% |
| !! | AGTGATAGAAAAAGAATAAA+TGG | - | chr6_4:57258154-57258173 | Msa0991640:CDS | 20.0% |
| !!! | TAAATGGATCATAATTTTTC+TGG | - | chr6_4:57258170-57258189 | Msa0991640:CDS | 20.0% |
| !!! | GATTGAATATGAAGTTTTTA+TGG | - | chr6_4:57258382-57258401 | Msa0991640:CDS | 20.0% |
| !!! | GTTATGAATTTTTTATGAAG+TGG | + | chr6_4:57258560-57258579 | None:intergenic | 20.0% |
| !!! | TGCATATATGACTTTTTTTA+AGG | + | chr6_4:57258630-57258649 | None:intergenic | 20.0% |
| !! | TGAATGGTAAAATTATGAAA+TGG | + | chr6_4:57258837-57258856 | None:intergenic | 20.0% |
| !! | AGTTAATTAATATAGGCAAA+TGG | - | chr6_4:57259610-57259629 | Msa0991640:intron | 20.0% |
| !! | GTTAATTAATATAGGCAAAT+GGG | - | chr6_4:57259611-57259630 | Msa0991640:intron | 20.0% |
| !! | TTAATTAATATAGGCAAATG+GGG | - | chr6_4:57259612-57259631 | Msa0991640:intron | 20.0% |
| !! | ATTATATTGAAACATTCTTC+AGG | + | chr6_4:57260107-57260126 | None:intergenic | 20.0% |
| !! | TGAAGAATGTTTCAATATAA+TGG | - | chr6_4:57260106-57260125 | Msa0991640:intron | 20.0% |
| ! | CAGTAGCTTCATTAAAAAAA+AGG | + | chr6_4:57257146-57257165 | None:intergenic | 25.0% |
| ! | AGTTGATTAAGAAGCAAATT+AGG | - | chr6_4:57257176-57257195 | Msa0991640:three_prime_UTR | 25.0% |
| ! | GTTGATTAAGAAGCAAATTA+GGG | - | chr6_4:57257177-57257196 | Msa0991640:three_prime_UTR | 25.0% |
| ! | TTGATTAAGAAGCAAATTAG+GGG | - | chr6_4:57257178-57257197 | Msa0991640:three_prime_UTR | 25.0% |
| !! | GTAATTTTTCCATTTCACAT+TGG | - | chr6_4:57257560-57257579 | Msa0991640:intron | 25.0% |
| ! | AAAATCATGTAGTGATTACA+TGG | - | chr6_4:57258022-57258041 | Msa0991640:CDS | 25.0% |
| ! | TTAATATTAGTGGAATCCAA+AGG | + | chr6_4:57258275-57258294 | None:intergenic | 25.0% |
| ! | CCACATGAAATTAATATTAG+TGG | + | chr6_4:57258285-57258304 | None:intergenic | 25.0% |
| ! | CCACTAATATTAATTTCATG+TGG | - | chr6_4:57258282-57258301 | Msa0991640:CDS | 25.0% |
| ! | AATGAAACCCAAAACAAAAT+TGG | + | chr6_4:57258309-57258328 | None:intergenic | 25.0% |
| !! | AATCAACAAAGGTATGAAAT+GGG | + | chr6_4:57258455-57258474 | None:intergenic | 25.0% |
| !! | TAATCAACAAAGGTATGAAA+TGG | + | chr6_4:57258456-57258475 | None:intergenic | 25.0% |
| !! | TACCTTTGTTGATTATATCT+AGG | - | chr6_4:57258461-57258480 | Msa0991640:intron | 25.0% |
| ! | ATCCTAGATATAATCAACAA+AGG | + | chr6_4:57258466-57258485 | None:intergenic | 25.0% |
| !! | TCTAGGATTTAAAATGTAAG+TGG | - | chr6_4:57258478-57258497 | Msa0991640:intron | 25.0% |
| !!! | TAAAATGTAAGTGGATTACA+TGG | - | chr6_4:57258487-57258506 | Msa0991640:intron | 25.0% |
| !!! | ACTTTTTTTAAGGTTGTCTT+AGG | + | chr6_4:57258620-57258639 | None:intergenic | 25.0% |
| ! | TTTAAAGAGCAACTTGTAAT+CGG | + | chr6_4:57258898-57258917 | None:intergenic | 25.0% |
| !!! | TATGGTTGTTATTTTATCGT+TGG | - | chr6_4:57259067-57259086 | Msa0991640:intron | 25.0% |
| !! | TTTTACAGAGTTATCAATTC+AGG | - | chr6_4:57259284-57259303 | Msa0991640:intron | 25.0% |
| ! | TGGTTGAAATACATATATAG+TGG | - | chr6_4:57259576-57259595 | Msa0991640:intron | 25.0% |
| ! | GGTTGAAATACATATATAGT+GGG | - | chr6_4:57259577-57259596 | Msa0991640:intron | 25.0% |
| !! | AAATACATATATAGTGGGAA+TGG | - | chr6_4:57259582-57259601 | Msa0991640:intron | 25.0% |
| ! | GGAAGAGAGTTAATTAATAT+AGG | - | chr6_4:57259603-57259622 | Msa0991640:intron | 25.0% |
| ! | TTGTTATCCTTATGTAATTC+TGG | - | chr6_4:57259929-57259948 | Msa0991640:intron | 25.0% |
| ! | TAAACATCCAGAATTACATA+AGG | + | chr6_4:57259939-57259958 | None:intergenic | 25.0% |
| ! | TAAATTTAATGTGCTCTGTT+CGG | - | chr6_4:57260020-57260039 | Msa0991640:intron | 25.0% |
| !! | TATTTTGTACTGTGATGTAA+TGG | - | chr6_4:57260208-57260227 | Msa0991640:intron | 25.0% |
| ! | AAAATGACCACAACATAAAT+GGG | + | chr6_4:57260307-57260326 | None:intergenic | 25.0% |
| ! | TAAAATGACCACAACATAAA+TGG | + | chr6_4:57260308-57260327 | None:intergenic | 25.0% |
| TTACCAAAGAGATAACGTAT+CGG | + | chr6_4:57257308-57257327 | None:intergenic | 30.0% | |
| ACGTTATCTCTTTGGTAAAA+TGG | - | chr6_4:57257310-57257329 | Msa0991640:intron | 30.0% | |
| TATCTCTTTGGTAAAATGGT+AGG | - | chr6_4:57257314-57257333 | Msa0991640:intron | 30.0% | |
| !!! | AATTAGTTTTCAAAGGTTGC+TGG | - | chr6_4:57257427-57257446 | Msa0991640:exon | 30.0% |
| AATCAACAACCAATGTGAAA+TGG | + | chr6_4:57257572-57257591 | None:intergenic | 30.0% | |
| !!! | TGTTGATTTGCAGCTTTTAT+TGG | - | chr6_4:57257584-57257603 | Msa0991640:intron | 30.0% |
| GTTGTATCGTATAGTGTAAA+TGG | + | chr6_4:57257613-57257632 | None:intergenic | 30.0% | |
| AATAGAACAGTGTAAAGCAA+AGG | + | chr6_4:57257749-57257768 | None:intergenic | 30.0% | |
| CACAAAGAGTTAATCGAAAT+TGG | - | chr6_4:57257952-57257971 | Msa0991640:intron | 30.0% | |
| TAGCTGAAATCATTTCATGA+GGG | + | chr6_4:57258219-57258238 | None:intergenic | 30.0% | |
| TTAGCTGAAATCATTTCATG+AGG | + | chr6_4:57258220-57258239 | None:intergenic | 30.0% | |
| CATTATGAATGTTCATGTAC+TGG | - | chr6_4:57258241-57258260 | Msa0991640:CDS | 30.0% | |
| !!! | ATGTGGTCCAATTTTGTTTT+GGG | - | chr6_4:57258299-57258318 | Msa0991640:CDS | 30.0% |
| ! | ATCAACAAAGGTATGAAATG+GGG | + | chr6_4:57258454-57258473 | None:intergenic | 30.0% |
| TAGATGGTTCCTATTTCATT+TGG | + | chr6_4:57258724-57258743 | None:intergenic | 30.0% | |
| TATCCATATACACTGCAATT+TGG | + | chr6_4:57258753-57258772 | None:intergenic | 30.0% | |
| ! | ATTTTCCTGCATAATTTTGC+AGG | - | chr6_4:57259012-57259031 | Msa0991640:intron | 30.0% |
| ! | ATTTTGCAGGTTTCTCTTTA+TGG | - | chr6_4:57259025-57259044 | Msa0991640:intron | 30.0% |
| ! | TTTTGCAGGTTTCTCTTTAT+GGG | - | chr6_4:57259026-57259045 | Msa0991640:intron | 30.0% |
| GATAGTTGTATTAGTAGCTA+TGG | - | chr6_4:57259049-57259068 | Msa0991640:intron | 30.0% | |
| AATGAATGTCAATCAAACAG+TGG | + | chr6_4:57259686-57259705 | None:intergenic | 30.0% | |
| TGTCTCAACTCTACTTAAAA+TGG | - | chr6_4:57259824-57259843 | Msa0991640:intron | 30.0% | |
| CTTGACAACTATAAAGAACA+AGG | - | chr6_4:57259862-57259881 | Msa0991640:intron | 30.0% | |
| ACATAAGGATAACAATTTGC+AGG | + | chr6_4:57259924-57259943 | None:intergenic | 30.0% | |
| TGTTTAATATCTGTGTTTGC+AGG | - | chr6_4:57259953-57259972 | Msa0991640:intron | 30.0% | |
| TGCATCCTCAACTTTATAAT+CGG | + | chr6_4:57259984-57260003 | None:intergenic | 30.0% | |
| !! | GCTACTTTATTTGTGTTTTG+TGG | - | chr6_4:57260235-57260254 | Msa0991640:intron | 30.0% |
| AACATAAATGGGCATTATCA+TGG | + | chr6_4:57260296-57260315 | None:intergenic | 30.0% | |
| AAGGTTGCTGGAATTTGATT+TGG | - | chr6_4:57257439-57257458 | Msa0991640:exon | 35.0% | |
| TCTTTCATATGTAAGCCTCT+TGG | - | chr6_4:57257771-57257790 | Msa0991640:intron | 35.0% | |
| TCATGAGTCAATCTAAATGC+AGG | - | chr6_4:57258054-57258073 | Msa0991640:CDS | 35.0% | |
| TACATCTCACACTCTAACTT+TGG | + | chr6_4:57258083-57258102 | None:intergenic | 35.0% | |
| AGTTAGAGTGTGAGATGTAT+AGG | - | chr6_4:57258084-57258103 | Msa0991640:CDS | 35.0% | |
| AGCTGAAATCATTTCATGAG+GGG | + | chr6_4:57258218-57258237 | None:intergenic | 35.0% | |
| TTAGTGGAATCCAAAGGAAA+AGG | + | chr6_4:57258269-57258288 | None:intergenic | 35.0% | |
| !! | CATGTGGTCCAATTTTGTTT+TGG | - | chr6_4:57258298-57258317 | Msa0991640:CDS | 35.0% |
| TTATAACCATTTCCATGTGC+AGG | + | chr6_4:57258339-57258358 | None:intergenic | 35.0% | |
| ! | TCAACAAAGGTATGAAATGG+GGG | + | chr6_4:57258453-57258472 | None:intergenic | 35.0% |
| TAGCAGGTTCCAAATGAAAT+AGG | - | chr6_4:57258712-57258731 | Msa0991640:intron | 35.0% | |
| ATGAAATAGGAACCATCTAC+AGG | - | chr6_4:57258725-57258744 | Msa0991640:intron | 35.0% | |
| GTTCCAAATTGCAGTGTATA+TGG | - | chr6_4:57258747-57258766 | Msa0991640:intron | 35.0% | |
| ATCGCACAAAATCAAAATGC+AGG | + | chr6_4:57258805-57258824 | None:intergenic | 35.0% | |
| AGAAACCTGCAAAATTATGC+AGG | + | chr6_4:57259020-57259039 | None:intergenic | 35.0% | |
| TTTGCAGGTTTCTCTTTATG+GGG | - | chr6_4:57259027-57259046 | Msa0991640:intron | 35.0% | |
| !! | GTTATTTTATCGTTGGTCCT+TGG | - | chr6_4:57259074-57259093 | Msa0991640:intron | 35.0% |
| TTGGACCAGTTTGACTATAT+GGG | - | chr6_4:57259093-57259112 | Msa0991640:intron | 35.0% | |
| !!! | AGGAGATGAGTTTAGTTTTG+AGG | - | chr6_4:57259117-57259136 | Msa0991640:intron | 35.0% |
| !!! | TAGTTTTGAGGAATTTCGAG+CGG | - | chr6_4:57259129-57259148 | Msa0991640:intron | 35.0% |
| CAGATGGAAAACCAAATGAA+AGG | + | chr6_4:57259243-57259262 | None:intergenic | 35.0% | |
| ! | AGTCCTGCTTCTATTTTGTT+TGG | - | chr6_4:57259340-57259359 | Msa0991640:intron | 35.0% |
| !!! | TGTTGGCAGAATTTGGTTTT+TGG | - | chr6_4:57259397-57259416 | Msa0991640:intron | 35.0% |
| TCAACTCTACTTAAAATGGC+AGG | - | chr6_4:57259828-57259847 | Msa0991640:intron | 35.0% | |
| CCTCAACTTTATAATCGGAA+TGG | + | chr6_4:57259979-57259998 | None:intergenic | 35.0% | |
| CCATTCCGATTATAAAGTTG+AGG | - | chr6_4:57259976-57259995 | Msa0991640:intron | 35.0% | |
| GACTAAATACACCGTTGTAA+AGG | - | chr6_4:57260080-57260099 | Msa0991640:intron | 35.0% | |
| ATTCTTCAGGACCTTTACAA+CGG | + | chr6_4:57260094-57260113 | None:intergenic | 35.0% | |
| TGCTGTTATTCTCTGTTCTT+TGG | - | chr6_4:57260140-57260159 | Msa0991640:intron | 35.0% | |
| GCTGTTATTCTCTGTTCTTT+GGG | - | chr6_4:57260141-57260160 | Msa0991640:intron | 35.0% | |
| GATAATGCCCATTTATGTTG+TGG | - | chr6_4:57260297-57260316 | Msa0991640:intron | 35.0% | |
| AAATCTTTGCTGCATGTAGT+GGG | + | chr6_4:57260334-57260353 | None:intergenic | 35.0% | |
| !! | ATTAGGGGCATTTGATTGCT+AGG | - | chr6_4:57257193-57257212 | Msa0991640:three_prime_UTR | 40.0% |
| !! | TTAGGGGCATTTGATTGCTA+GGG | - | chr6_4:57257194-57257213 | Msa0991640:three_prime_UTR | 40.0% |
| ! | AAGAGATAACGTATCGGTGT+CGG | + | chr6_4:57257302-57257321 | None:intergenic | 40.0% |
| ACACCGATACGTTATCTCTT+TGG | - | chr6_4:57257302-57257321 | Msa0991640:intron | 40.0% | |
| TTCATATGTAAGCCTCTTGG+TGG | - | chr6_4:57257774-57257793 | Msa0991640:intron | 40.0% | |
| GGTGGTTAGTAGAGGAATAT+TGG | - | chr6_4:57257792-57257811 | Msa0991640:intron | 40.0% | |
| GGAAAGAGCAACAAGAGATT+TGG | - | chr6_4:57258125-57258144 | Msa0991640:CDS | 40.0% | |
| !! | TGTACTGGTACCTTTTCCTT+TGG | - | chr6_4:57258256-57258275 | Msa0991640:CDS | 40.0% |
| ! | TGCAATTTGGAACCTGTAGA+TGG | + | chr6_4:57258740-57258759 | None:intergenic | 40.0% |
| CATATAGTCAAACTGGTCCA+AGG | + | chr6_4:57259094-57259113 | None:intergenic | 40.0% | |
| CTTGGACCAGTTTGACTATA+TGG | - | chr6_4:57259092-57259111 | Msa0991640:intron | 40.0% | |
| ACCAGTTTGACTATATGGGA+AGG | - | chr6_4:57259097-57259116 | Msa0991640:intron | 40.0% | |
| TCCTTCCCATATAGTCAAAC+TGG | + | chr6_4:57259101-57259120 | None:intergenic | 40.0% | |
| !!! | TATGCCGCCTTGCATTTTTT+GGG | - | chr6_4:57259208-57259227 | Msa0991640:intron | 40.0% |
| AACACCCAAAAAATGCAAGG+CGG | + | chr6_4:57259215-57259234 | None:intergenic | 40.0% | |
| ! | TGGTTTTCCATCTGTTTGTG+CGG | - | chr6_4:57259249-57259268 | Msa0991640:intron | 40.0% |
| GAGCCAAACAAAATAGAAGC+AGG | + | chr6_4:57259346-57259365 | None:intergenic | 40.0% | |
| !! | GCTTCTATTTTGTTTGGCTC+TGG | - | chr6_4:57259346-57259365 | Msa0991640:intron | 40.0% |
| !! | CTTCAAGTGTTGGCAGAATT+TGG | - | chr6_4:57259390-57259409 | Msa0991640:intron | 40.0% |
| GTAGTGTACCTTCACAGAAT+TGG | + | chr6_4:57259472-57259491 | None:intergenic | 40.0% | |
| AGGCAAATGGGGAAAATTTG+AGG | - | chr6_4:57259623-57259642 | Msa0991640:intron | 40.0% | |
| GAAATCTTTGCTGCATGTAG+TGG | + | chr6_4:57260335-57260354 | None:intergenic | 40.0% | |
| ! | AGAGATAACGTATCGGTGTC+GGG | + | chr6_4:57257301-57257320 | None:intergenic | 45.0% |
| TTCCTCTACTAACCACCAAG+AGG | + | chr6_4:57257789-57257808 | None:intergenic | 45.0% | |
| !!! | GTATGCCGCCTTGCATTTTT+TGG | - | chr6_4:57259207-57259226 | Msa0991640:intron | 45.0% |
| !!! | GCCTTGCATTTTTTGGGTGT+TGG | - | chr6_4:57259214-57259233 | Msa0991640:intron | 45.0% |
| GCCAACACCCAAAAAATGCA+AGG | + | chr6_4:57259218-57259237 | None:intergenic | 45.0% | |
| !! | GGTGTTGGCTACCTTTCATT+TGG | - | chr6_4:57259229-57259248 | Msa0991640:intron | 45.0% |
| ACAGCCTAGACTTCAAGTGT+TGG | - | chr6_4:57259380-57259399 | Msa0991640:intron | 45.0% | |
| TCTGCCAACACTTGAAGTCT+AGG | + | chr6_4:57259387-57259406 | None:intergenic | 45.0% | |
| ! | CTGCCATGTTGTCGTTTATG+CGG | - | chr6_4:57259431-57259450 | Msa0991640:intron | 45.0% |
| ! | TGCCATGTTGTCGTTTATGC+GGG | - | chr6_4:57259432-57259451 | Msa0991640:intron | 45.0% |
| ACTTTCCGCCAATTCTGTGA+AGG | - | chr6_4:57259461-57259480 | Msa0991640:intron | 45.0% | |
| GTGTACCTTCACAGAATTGG+CGG | + | chr6_4:57259469-57259488 | None:intergenic | 45.0% | |
| TTGAGGATGCATGCTGTTCA+TGG | - | chr6_4:57259993-57260012 | Msa0991640:intron | 45.0% | |
| TGCTCTGTTCGGTTGTATGA+AGG | - | chr6_4:57260031-57260050 | Msa0991640:intron | 45.0% | |
| !!! | AATTTTTCATATTTATAATT+TGG | - | chr6_4:57258975-57258994 | Msa0991640:intron | 5.0% |
| !! | AAATATTTACATATTATTAT+AGG | - | chr6_4:57259553-57259572 | Msa0991640:intron | 5.0% |
| !! | ATAACGTATCGGTGTCGGGT+TGG | + | chr6_4:57257297-57257316 | None:intergenic | 50.0% |
| ! | AGCCTCTTGGTGGTTAGTAG+AGG | - | chr6_4:57257784-57257803 | Msa0991640:intron | 50.0% |
| TCATTGCTACGTCCTGCACA+TGG | - | chr6_4:57258324-57258343 | Msa0991640:CDS | 50.0% | |
| CTACGTCCTGCACATGGAAA+TGG | - | chr6_4:57258330-57258349 | Msa0991640:CDS | 50.0% | |
| AATGCAAGGCGGCATACAAC+TGG | + | chr6_4:57259204-57259223 | None:intergenic | 50.0% | |
| GACCCGCATAAACGACAACA+TGG | + | chr6_4:57259437-57259456 | None:intergenic | 50.0% | |
| CTGTTCTTTGGGCTGCGAAT+TGG | - | chr6_4:57260152-57260171 | Msa0991640:intron | 50.0% | |
| !! | TCGGTGTCGGGTTGGATTTG+TGG | + | chr6_4:57257289-57257308 | None:intergenic | 55.0% |
| ACTGCAGCCGCACAAACAGA+TGG | + | chr6_4:57259259-57259278 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 57257102 | 57260360 | 57257102 | ID=Msa0991640;Name=Msa0991640 |
| chr6_4 | mRNA | 57257102 | 57260360 | 57257102 | ID=Msa0991640-mRNA-1;Parent=Msa0991640;Name=Msa0991640-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0.33|0.5|1|0.66|0.5|4|318|158 |
| chr6_4 | exon | 57257102 | 57257300 | 57257102 | ID=Msa0991640-mRNA-1:exon:11455;Parent=Msa0991640-mRNA-1 |
| chr6_4 | exon | 57257321 | 57257487 | 57257321 | ID=Msa0991640-mRNA-1:exon:11454;Parent=Msa0991640-mRNA-1 |
| chr6_4 | exon | 57258009 | 57258428 | 57258009 | ID=Msa0991640-mRNA-1:exon:11453;Parent=Msa0991640-mRNA-1 |
| chr6_4 | exon | 57260352 | 57260360 | 57260352 | ID=Msa0991640-mRNA-1:exon:11452;Parent=Msa0991640-mRNA-1 |
| chr6_4 | CDS | 57260352 | 57260360 | 57260352 | ID=Msa0991640-mRNA-1:cds;Parent=Msa0991640-mRNA-1 |
| chr6_4 | CDS | 57258009 | 57258428 | 57258009 | ID=Msa0991640-mRNA-1:cds;Parent=Msa0991640-mRNA-1 |
| chr6_4 | CDS | 57257440 | 57257487 | 57257440 | ID=Msa0991640-mRNA-1:cds;Parent=Msa0991640-mRNA-1 |
| chr6_4 | three_prime_UTR | 57257321 | 57257439 | 57257321 | ID=Msa0991640-mRNA-1:three_prime_utr;Parent=Msa0991640-mRNA-1 |
| chr6_4 | three_prime_UTR | 57257102 | 57257300 | 57257102 | ID=Msa0991640-mRNA-1:three_prime_utr;Parent=Msa0991640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
