Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595310 | XP_013455259.2 | 93.388 | 363 | 24 | 0 | 1 | 363 | 1 | 363 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595310 | sp|O24305|M3OM1_PEA | 74.931 | 363 | 88 | 2 | 1 | 363 | 1 | 360 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595310 | Q06YR0 | 93.388 | 363 | 24 | 0 | 1 | 363 | 1 | 363 | 0.0 | 677 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139120 | Msa0595310 | 0.855700 | 5.292414e-62 | -8.615850e-47 |
| Msa0595310 | Msa0595360 | 0.800819 | 1.204878e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595310 | MtrunA17_Chr4g0014681 | 93.388 | 363 | 24 | 0 | 1 | 363 | 1 | 363 | 0.0 | 677 |
| Msa0595310 | MtrunA17_Chr4g0014561 | 92.837 | 363 | 26 | 0 | 1 | 363 | 1 | 363 | 0.0 | 672 |
| Msa0595310 | MtrunA17_Chr4g0014641 | 88.981 | 363 | 40 | 0 | 1 | 363 | 1 | 363 | 0.0 | 651 |
| Msa0595310 | MtrunA17_Chr4g0046361 | 73.003 | 363 | 96 | 1 | 1 | 363 | 1 | 361 | 0.0 | 559 |
| Msa0595310 | MtrunA17_Chr4g0014661 | 77.135 | 363 | 77 | 1 | 1 | 363 | 1 | 357 | 0.0 | 549 |
| Msa0595310 | MtrunA17_Chr4g0046341 | 74.451 | 364 | 92 | 1 | 1 | 363 | 1 | 364 | 0.0 | 534 |
| Msa0595310 | MtrunA17_Chr4g0014591 | 76.309 | 363 | 80 | 1 | 1 | 363 | 1 | 357 | 0.0 | 523 |
| Msa0595310 | MtrunA17_Chr4g0014601 | 74.812 | 266 | 61 | 1 | 1 | 266 | 1 | 260 | 5.68e-149 | 421 |
| Msa0595310 | MtrunA17_Chr5g0432301 | 51.240 | 363 | 167 | 6 | 4 | 362 | 3 | 359 | 2.57e-126 | 367 |
| Msa0595310 | MtrunA17_Chr5g0432251 | 49.859 | 355 | 170 | 5 | 11 | 363 | 11 | 359 | 3.57e-124 | 361 |
| Msa0595310 | MtrunA17_Chr7g0219141 | 47.383 | 363 | 185 | 4 | 1 | 363 | 1 | 357 | 4.04e-122 | 356 |
| Msa0595310 | MtrunA17_Chr5g0432241 | 49.859 | 355 | 170 | 5 | 11 | 363 | 12 | 360 | 2.88e-121 | 354 |
| Msa0595310 | MtrunA17_Chr7g0219161 | 49.716 | 352 | 169 | 6 | 1 | 351 | 1 | 345 | 2.69e-120 | 352 |
| Msa0595310 | MtrunA17_Chr1g0188391 | 48.907 | 366 | 179 | 6 | 1 | 363 | 1 | 361 | 6.83e-119 | 348 |
| Msa0595310 | MtrunA17_Chr7g0223231 | 47.765 | 358 | 175 | 4 | 4 | 361 | 3 | 348 | 8.87e-118 | 345 |
| Msa0595310 | MtrunA17_Chr5g0432261 | 48.442 | 353 | 150 | 3 | 11 | 363 | 7 | 327 | 1.74e-115 | 338 |
| Msa0595310 | MtrunA17_Chr7g0223241 | 48.603 | 358 | 172 | 4 | 4 | 361 | 3 | 348 | 4.60e-115 | 338 |
| Msa0595310 | MtrunA17_Chr4g0046531 | 51.558 | 353 | 162 | 4 | 11 | 362 | 11 | 355 | 6.54e-115 | 350 |
| Msa0595310 | MtrunA17_Chr4g0046531 | 50.565 | 354 | 166 | 4 | 11 | 363 | 373 | 718 | 4.06e-113 | 345 |
| Msa0595310 | MtrunA17_Chr5g0432211 | 46.761 | 355 | 167 | 6 | 11 | 363 | 11 | 345 | 2.02e-110 | 326 |
| Msa0595310 | MtrunA17_Chr4g0040621 | 46.610 | 354 | 180 | 3 | 11 | 363 | 24 | 369 | 2.21e-110 | 327 |
| Msa0595310 | MtrunA17_Chr1g0188371 | 46.377 | 345 | 173 | 7 | 4 | 343 | 3 | 340 | 6.68e-97 | 293 |
| Msa0595310 | MtrunA17_Chr3g0121301 | 37.609 | 343 | 199 | 9 | 20 | 359 | 27 | 357 | 2.63e-64 | 208 |
| Msa0595310 | MtrunA17_Chr4g0021981 | 34.247 | 365 | 226 | 8 | 3 | 363 | 14 | 368 | 6.34e-59 | 194 |
| Msa0595310 | MtrunA17_Chr4g0022021 | 34.521 | 365 | 225 | 8 | 3 | 363 | 14 | 368 | 3.07e-58 | 193 |
| Msa0595310 | MtrunA17_Chr7g0219171 | 57.463 | 134 | 56 | 1 | 230 | 363 | 116 | 248 | 6.56e-49 | 165 |
| Msa0595310 | MtrunA17_Chr7g0219171 | 47.541 | 122 | 57 | 1 | 1 | 122 | 1 | 115 | 4.09e-30 | 115 |
| Msa0595310 | MtrunA17_Chr8g0367501 | 32.967 | 364 | 228 | 10 | 5 | 361 | 6 | 360 | 4.27e-47 | 165 |
| Msa0595310 | MtrunA17_Chr7g0218301 | 32.845 | 341 | 208 | 10 | 32 | 361 | 40 | 370 | 6.75e-46 | 160 |
| Msa0595310 | MtrunA17_Chr7g0218271 | 32.258 | 341 | 210 | 11 | 32 | 361 | 40 | 370 | 1.25e-44 | 157 |
| Msa0595310 | MtrunA17_Chr1g0200491 | 32.209 | 326 | 207 | 7 | 32 | 350 | 40 | 358 | 1.75e-44 | 157 |
| Msa0595310 | MtrunA17_Chr7g0218131 | 31.953 | 338 | 215 | 9 | 32 | 362 | 40 | 369 | 2.37e-44 | 156 |
| Msa0595310 | MtrunA17_Chr1g0163601 | 30.931 | 333 | 216 | 7 | 25 | 350 | 30 | 355 | 5.54e-44 | 155 |
| Msa0595310 | MtrunA17_Chr7g0218181 | 30.904 | 343 | 209 | 10 | 32 | 362 | 40 | 366 | 6.53e-44 | 155 |
| Msa0595310 | MtrunA17_Chr1g0163611 | 30.259 | 347 | 226 | 8 | 25 | 362 | 30 | 369 | 3.32e-43 | 153 |
| Msa0595310 | MtrunA17_Chr8g0367491 | 32.047 | 337 | 215 | 9 | 26 | 355 | 40 | 369 | 5.00e-43 | 153 |
| Msa0595310 | MtrunA17_Chr5g0448091 | 34.132 | 334 | 199 | 12 | 31 | 355 | 33 | 354 | 9.39e-43 | 152 |
| Msa0595310 | MtrunA17_Chr7g0218261 | 32.036 | 334 | 214 | 8 | 32 | 361 | 39 | 363 | 1.30e-42 | 152 |
| Msa0595310 | MtrunA17_Chr8g0367451 | 32.923 | 325 | 205 | 8 | 26 | 344 | 40 | 357 | 3.17e-42 | 151 |
| Msa0595310 | MtrunA17_Chr8g0367441 | 32.615 | 325 | 206 | 8 | 26 | 344 | 41 | 358 | 3.31e-42 | 151 |
| Msa0595310 | MtrunA17_Chr7g0218211 | 32.239 | 335 | 213 | 8 | 32 | 361 | 39 | 364 | 2.42e-41 | 148 |
| Msa0595310 | MtrunA17_Chr7g0276401 | 31.751 | 337 | 206 | 9 | 26 | 353 | 42 | 363 | 1.42e-40 | 147 |
| Msa0595310 | MtrunA17_Chr7g0276411 | 31.307 | 329 | 213 | 8 | 26 | 348 | 26 | 347 | 3.74e-40 | 145 |
| Msa0595310 | MtrunA17_Chr2g0307521 | 30.769 | 338 | 213 | 11 | 32 | 361 | 34 | 358 | 8.86e-40 | 144 |
| Msa0595310 | MtrunA17_Chr2g0314271 | 32.344 | 337 | 209 | 8 | 31 | 360 | 27 | 351 | 3.12e-39 | 142 |
| Msa0595310 | MtrunA17_Chr3g0128011 | 33.133 | 332 | 193 | 10 | 31 | 349 | 88 | 403 | 2.40e-38 | 142 |
| Msa0595310 | MtrunA17_Chr1g0163621 | 28.916 | 332 | 224 | 5 | 25 | 350 | 44 | 369 | 7.80e-38 | 139 |
| Msa0595310 | MtrunA17_Chr4g0014611 | 82.000 | 100 | 18 | 0 | 264 | 363 | 8 | 107 | 9.66e-38 | 131 |
| Msa0595310 | MtrunA17_Chr3g0085211 | 31.804 | 327 | 211 | 8 | 28 | 350 | 38 | 356 | 1.93e-37 | 138 |
| Msa0595310 | MtrunA17_Chr8g0345851 | 33.333 | 255 | 161 | 5 | 98 | 350 | 30 | 277 | 8.70e-35 | 129 |
| Msa0595310 | MtrunA17_Chr3g0085201 | 30.031 | 323 | 214 | 8 | 32 | 350 | 29 | 343 | 5.21e-34 | 129 |
| Msa0595310 | MtrunA17_Chr3g0130011 | 29.885 | 348 | 222 | 11 | 23 | 362 | 24 | 357 | 7.07e-34 | 128 |
| Msa0595310 | MtrunA17_Chr8g0367381 | 30.645 | 310 | 185 | 8 | 26 | 330 | 41 | 325 | 7.96e-34 | 127 |
| Msa0595310 | MtrunA17_Chr3g0130061 | 28.406 | 345 | 227 | 10 | 23 | 360 | 24 | 355 | 9.16e-31 | 120 |
| Msa0595310 | MtrunA17_Chr4g0014671 | 77.143 | 105 | 24 | 0 | 259 | 363 | 30 | 134 | 6.09e-29 | 109 |
| Msa0595310 | MtrunA17_Chr4g0014621 | 80.303 | 66 | 13 | 0 | 298 | 363 | 197 | 262 | 6.00e-22 | 94.0 |
| Msa0595310 | MtrunA17_Chr6g0482291 | 30.814 | 172 | 107 | 3 | 178 | 348 | 1 | 161 | 2.55e-20 | 87.0 |
| Msa0595310 | MtrunA17_Chr8g0367461 | 40.741 | 108 | 59 | 3 | 250 | 355 | 1 | 105 | 7.22e-19 | 81.3 |
| Msa0595310 | MtrunA17_Chr4g0014551 | 100.000 | 44 | 0 | 0 | 320 | 363 | 1 | 44 | 7.16e-16 | 70.9 |
| Msa0595310 | MtrunA17_Chr4g0011691 | 35.252 | 139 | 79 | 4 | 6 | 144 | 16 | 143 | 1.16e-14 | 72.8 |
| Msa0595310 | MtrunA17_Chr4g0011691 | 41.667 | 96 | 52 | 3 | 265 | 359 | 140 | 232 | 5.09e-13 | 68.2 |
| Msa0595310 | MtrunA17_Chr8g0367401 | 38.462 | 91 | 56 | 0 | 173 | 263 | 20 | 110 | 1.19e-14 | 70.5 |
| Msa0595310 | MtrunA17_Chr1g0170941 | 45.455 | 66 | 36 | 0 | 196 | 261 | 11 | 76 | 1.73e-13 | 65.1 |
| Msa0595310 | MtrunA17_Chr8g0367391 | 34.483 | 116 | 69 | 4 | 236 | 348 | 8 | 119 | 7.45e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595310 | AT4G35150.1 | 30.447 | 358 | 189 | 10 | 16 | 362 | 15 | 323 | 1.28e-48 | 167 |
| Msa0595310 | AT4G35160.1 | 33.607 | 366 | 210 | 13 | 16 | 362 | 29 | 380 | 3.27e-47 | 165 |
| Msa0595310 | AT1G77520.1 | 30.997 | 371 | 231 | 11 | 8 | 362 | 19 | 380 | 3.99e-42 | 151 |
| Msa0595310 | AT5G54160.1 | 32.931 | 331 | 195 | 9 | 31 | 350 | 34 | 348 | 6.61e-42 | 150 |
| Msa0595310 | AT1G51990.2 | 32.749 | 342 | 208 | 11 | 33 | 363 | 32 | 362 | 3.62e-41 | 148 |
| Msa0595310 | AT1G51990.1 | 32.749 | 342 | 208 | 11 | 33 | 363 | 32 | 362 | 1.39e-40 | 147 |
| Msa0595310 | AT3G53140.1 | 33.430 | 344 | 201 | 13 | 31 | 360 | 27 | 356 | 2.09e-38 | 140 |
| Msa0595310 | AT5G53810.1 | 31.124 | 347 | 219 | 9 | 29 | 362 | 38 | 377 | 2.06e-35 | 133 |
| Msa0595310 | AT1G33030.1 | 29.217 | 332 | 216 | 10 | 31 | 353 | 21 | 342 | 3.90e-35 | 132 |
| Msa0595310 | AT1G77530.1 | 31.536 | 371 | 229 | 11 | 8 | 362 | 19 | 380 | 5.04e-34 | 129 |
| Msa0595310 | AT1G63140.2 | 29.730 | 370 | 236 | 11 | 9 | 362 | 19 | 380 | 1.90e-33 | 128 |
| Msa0595310 | AT1G63140.4 | 29.730 | 370 | 236 | 11 | 9 | 362 | 39 | 400 | 2.01e-33 | 128 |
| Msa0595310 | AT1G76790.1 | 28.032 | 371 | 217 | 16 | 7 | 355 | 9 | 351 | 6.06e-26 | 107 |
| Msa0595310 | AT1G62900.1 | 35.938 | 192 | 118 | 3 | 173 | 362 | 16 | 204 | 8.77e-26 | 103 |
| Msa0595310 | AT1G21130.1 | 26.946 | 334 | 213 | 11 | 31 | 348 | 40 | 358 | 4.93e-24 | 102 |
| Msa0595310 | AT1G21100.1 | 26.786 | 336 | 215 | 11 | 31 | 350 | 40 | 360 | 1.56e-23 | 100 |
| Msa0595310 | AT1G21110.1 | 26.284 | 331 | 213 | 11 | 31 | 345 | 40 | 355 | 6.31e-23 | 99.0 |
| Msa0595310 | AT5G37170.2 | 30.928 | 194 | 128 | 4 | 172 | 362 | 43 | 233 | 1.16e-22 | 95.5 |
| Msa0595310 | AT5G37170.1 | 23.836 | 365 | 218 | 10 | 8 | 362 | 19 | 333 | 1.92e-22 | 97.1 |
| Msa0595310 | AT1G21120.1 | 26.048 | 334 | 216 | 11 | 31 | 348 | 40 | 358 | 9.19e-22 | 95.5 |
| Msa0595310 | AT5G37170.3 | 33.526 | 173 | 106 | 5 | 194 | 360 | 14 | 183 | 1.02e-21 | 91.7 |
| Msa0595310 | AT1G21120.2 | 25.893 | 336 | 218 | 11 | 31 | 350 | 88 | 408 | 2.23e-21 | 95.1 |
| Msa0595310 | AT1G63140.1 | 27.881 | 269 | 175 | 8 | 9 | 263 | 39 | 302 | 6.84e-16 | 77.8 |
| Msa0595310 | AT1G33030.2 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 3.12e-14 | 72.4 |
| Msa0595310 | AT1G33030.3 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 6.83e-14 | 71.6 |
Find 61 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCAAGAGGAGAGACATTT+TGG | 0.134700 | 4_2:-24349845 | Msa0595310:CDS |
| GGTCAAATACTATGCATTTA+AGG | 0.227863 | 4_2:+24349634 | None:intergenic |
| ATGATGATGACTTTGTTAAA+TGG | 0.247172 | 4_2:-24348539 | Msa0595310:CDS |
| TGAAACAAATGAGTTGAAAT+TGG | 0.279186 | 4_2:-24348573 | Msa0595310:CDS |
| TGTATATATGTTTGTATAGA+TGG | 0.289789 | 4_2:+24350246 | None:intergenic |
| TGAATTGTCCTTAAGGATAT+TGG | 0.289913 | 4_2:-24348684 | Msa0595310:CDS |
| CTCAGTGAGCCATTTGTTAG+AGG | 0.332609 | 4_2:+24349893 | None:intergenic |
| GCTAATTCATTAAGAGTCAT+TGG | 0.360430 | 4_2:+24350149 | None:intergenic |
| TAGCCATGTGTTTGAAGGTT+TGG | 0.381600 | 4_2:-24349724 | Msa0595310:CDS |
| AAGAAAGAGAGAAGAAAGAA+TGG | 0.382447 | 4_2:-24348514 | Msa0595310:CDS |
| TAAGGTGAGGAAAAGTTTCA+TGG | 0.401531 | 4_2:+24349652 | None:intergenic |
| AACGAAAATTTGAAATTTGT+TGG | 0.401585 | 4_2:-24349582 | Msa0595310:CDS |
| CTGAGTTTCTTCCCTGCCAT+TGG | 0.421198 | 4_2:+24350286 | None:intergenic |
| GAGTGTAGCCATGTGTTTGA+AGG | 0.425506 | 4_2:-24349729 | Msa0595310:CDS |
| GTTTGAAGGTTTGGAGTCTC+TGG | 0.426025 | 4_2:-24349715 | Msa0595310:CDS |
| GGAATGATGAATTGTCCTTA+AGG | 0.441769 | 4_2:-24348691 | Msa0595310:CDS |
| CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 4_2:+24349984 | None:intergenic |
| GCAGTTCTCCAATATCCTTA+AGG | 0.450113 | 4_2:+24348676 | None:intergenic |
| GTTGATGTTGGAGGTGGCAC+AGG | 0.461040 | 4_2:-24349693 | Msa0595310:CDS |
| CTCAAATCAGCCGTGGAACT+AGG | 0.484791 | 4_2:-24350203 | Msa0595310:CDS |
| AGAAAGAGAGAAGAAAGAAT+GGG | 0.494469 | 4_2:-24348513 | Msa0595310:CDS |
| TTGGAGTCTCTGGTTGATGT+TGG | 0.495110 | 4_2:-24349705 | Msa0595310:CDS |
| GAAAATTTGAAATTTGTTGG+TGG | 0.495217 | 4_2:-24349579 | Msa0595310:CDS |
| GAGTCTCTGGTTGATGTTGG+AGG | 0.503583 | 4_2:-24349702 | Msa0595310:CDS |
| GCAAACGCAAGAGACGATAA+AGG | 0.507273 | 4_2:+24350090 | None:intergenic |
| AGTCTCTTTGAGAGCGCAAG+AGG | 0.511386 | 4_2:-24349858 | Msa0595310:CDS |
| TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | 4_2:+24349942 | None:intergenic |
| ACACTGATGAATGGCAAAGA+AGG | 0.516027 | 4_2:-24350038 | Msa0595310:CDS |
| CACGGCTGATTTGAGTGCCA+TGG | 0.517659 | 4_2:+24350211 | None:intergenic |
| TGTGGCACTCCTCTAACAAA+TGG | 0.518573 | 4_2:-24349902 | Msa0595310:CDS |
| GATGTTGGAGGTGGCACAGG+AGG | 0.520874 | 4_2:-24349690 | Msa0595310:CDS |
| GAGAAACTCATATTTGATGC+AGG | 0.523151 | 4_2:-24348491 | Msa0595310:CDS |
| ATCTGCTATGCCTAGTTCCA+CGG | 0.523313 | 4_2:+24350193 | None:intergenic |
| TGGATTTCAGTACCAATGGC+AGG | 0.523941 | 4_2:-24350298 | Msa0595310:CDS |
| TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | 4_2:-24349951 | Msa0595310:CDS |
| ATAGACTTGAAACCGCATAT+AGG | 0.541344 | 4_2:+24348446 | None:intergenic |
| GCGAAAACAACACTGATGAA+TGG | 0.541866 | 4_2:-24350047 | Msa0595310:CDS |
| ATCCATGTCGTCTGAACGTG+TGG | 0.545741 | 4_2:-24349920 | Msa0595310:CDS |
| ATACAGCTTTATAAATTCCA+TGG | 0.553200 | 4_2:-24350228 | Msa0595310:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_2:+24349534 | None:intergenic |
| AAAATGGATTTCAGTACCAA+TGG | 0.558143 | 4_2:-24350302 | Msa0595310:CDS |
| GAGTATGTTTCAAGATGCCA+TGG | 0.571374 | 4_2:-24349787 | Msa0595310:CDS |
| CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 4_2:-24349984 | Msa0595310:CDS |
| CAAATGGCTCACTGAGGACA+AGG | 0.577988 | 4_2:-24349886 | Msa0595310:CDS |
| GATTTGAGAATCAGCTGCCA+TGG | 0.583476 | 4_2:+24349770 | None:intergenic |
| TCTCTGGTTGATGTTGGAGG+TGG | 0.586831 | 4_2:-24349699 | Msa0595310:CDS |
| TGCCACACGTTCAGACGACA+TGG | 0.594397 | 4_2:+24349918 | None:intergenic |
| AATACTATGCATTTAAGGTG+AGG | 0.597229 | 4_2:+24349639 | None:intergenic |
| TAAAGGACACTAACTTTCGA+AGG | 0.602158 | 4_2:+24350107 | None:intergenic |
| TTGCGTTTGCTAACACACAA+TGG | 0.605432 | 4_2:-24350077 | Msa0595310:CDS |
| GGACACTAACTTTCGAAGGG+TGG | 0.614681 | 4_2:+24350111 | None:intergenic |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_2:+24349537 | None:intergenic |
| GGATTTCAGTACCAATGGCA+GGG | 0.632276 | 4_2:-24350297 | Msa0595310:CDS |
| CATGGCACTCAAATCAGCCG+TGG | 0.640463 | 4_2:-24350210 | Msa0595310:CDS |
| GCAGATGCAATCCACAACCA+TGG | 0.642290 | 4_2:-24350176 | Msa0595310:CDS |
| TATAAGATTACACCTATATG+CGG | 0.657814 | 4_2:-24348458 | Msa0595310:CDS |
| CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 4_2:+24349987 | None:intergenic |
| AAAGGACACTAACTTTCGAA+GGG | 0.667819 | 4_2:+24350108 | None:intergenic |
| ACTCCAAACCTTCAAACACA+TGG | 0.677292 | 4_2:+24349721 | None:intergenic |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_2:+24349538 | None:intergenic |
| CTCTAACAAATGGCTCACTG+AGG | 0.728882 | 4_2:-24349892 | Msa0595310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTAAAACATTTTTTTT+TGG | - | chr4_2:24349235-24349254 | Msa0595310:intron | 10.0% |
| !!! | TGATTAAAACATTTTTTTTT+GGG | - | chr4_2:24349236-24349255 | Msa0595310:intron | 10.0% |
| !!! | AATCTTTTAAAAAAAATTGT+AGG | - | chr4_2:24349547-24349566 | Msa0595310:CDS | 10.0% |
| !!! | TTGATTAAAACATTTTTTTT+TGG | - | chr4_2:24349235-24349254 | Msa0595310:intron | 10.0% |
| !!! | TGATTAAAACATTTTTTTTT+GGG | - | chr4_2:24349236-24349255 | Msa0595310:intron | 10.0% |
| !!! | AATCTTTTAAAAAAAATTGT+AGG | - | chr4_2:24349547-24349566 | Msa0595310:CDS | 10.0% |
| !! | TGTATATATGTTTGTATAGA+TGG | + | chr4_2:24348483-24348502 | None:intergenic | 20.0% |
| !!! | AACGAAAATTTGAAATTTGT+TGG | - | chr4_2:24349144-24349163 | Msa0595310:intron | 20.0% |
| !! | TTATGTCATGAAAATAATCA+AGG | - | chr4_2:24349262-24349281 | Msa0595310:intron | 20.0% |
| !!! | TTCATTTTTCTTTTTTGAGT+GGG | + | chr4_2:24349380-24349399 | None:intergenic | 20.0% |
| !! | TTAACTTAGAAATAGAAACA+TGG | + | chr4_2:24349435-24349454 | None:intergenic | 20.0% |
| !!! | AATTGTAGGTTTTCTTTATT+AGG | - | chr4_2:24349561-24349580 | Msa0595310:CDS | 20.0% |
| !!! | ATTGTAGGTTTTCTTTATTA+GGG | - | chr4_2:24349562-24349581 | Msa0595310:CDS | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | - | chr4_2:24349852-24349871 | Msa0595310:CDS | 20.0% |
| !! | CTAATTAATCTTTGCAATAA+AGG | - | chr4_2:24349905-24349924 | Msa0595310:CDS | 20.0% |
| !!! | GATAAATTCTTTTTTTACAG+TGG | - | chr4_2:24349999-24350018 | Msa0595310:CDS | 20.0% |
| !! | TGTATATATGTTTGTATAGA+TGG | + | chr4_2:24348483-24348502 | None:intergenic | 20.0% |
| !!! | AACGAAAATTTGAAATTTGT+TGG | - | chr4_2:24349144-24349163 | Msa0595310:intron | 20.0% |
| !! | TTATGTCATGAAAATAATCA+AGG | - | chr4_2:24349262-24349281 | Msa0595310:intron | 20.0% |
| !!! | TTCATTTTTCTTTTTTGAGT+GGG | + | chr4_2:24349380-24349399 | None:intergenic | 20.0% |
| !! | TTAACTTAGAAATAGAAACA+TGG | + | chr4_2:24349435-24349454 | None:intergenic | 20.0% |
| !!! | AATTGTAGGTTTTCTTTATT+AGG | - | chr4_2:24349561-24349580 | Msa0595310:CDS | 20.0% |
| !!! | ATTGTAGGTTTTCTTTATTA+GGG | - | chr4_2:24349562-24349581 | Msa0595310:CDS | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | - | chr4_2:24349852-24349871 | Msa0595310:CDS | 20.0% |
| !! | CTAATTAATCTTTGCAATAA+AGG | - | chr4_2:24349905-24349924 | Msa0595310:CDS | 20.0% |
| !!! | GATAAATTCTTTTTTTACAG+TGG | - | chr4_2:24349999-24350018 | Msa0595310:CDS | 20.0% |
| !! | ATACAGCTTTATAAATTCCA+TGG | - | chr4_2:24348498-24348517 | Msa0595310:CDS | 25.0% |
| !! | CTTAACAAAGATTTTGAATC+TGG | - | chr4_2:24348910-24348929 | Msa0595310:intron | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | - | chr4_2:24349147-24349166 | Msa0595310:intron | 25.0% |
| !!! | TCATTTTTCTTTTTTGAGTG+GGG | + | chr4_2:24349379-24349398 | None:intergenic | 25.0% |
| !!! | GTTCATTTTTCTTTTTTGAG+TGG | + | chr4_2:24349381-24349400 | None:intergenic | 25.0% |
| !!! | ATTGCTAAGTTTGATTTTTG+TGG | - | chr4_2:24349478-24349497 | Msa0595310:intron | 25.0% |
| !! | TTGTAGGTTTTCTTTATTAG+GGG | - | chr4_2:24349563-24349582 | Msa0595310:CDS | 25.0% |
| !! | ATGTGAGAAGATTATTTTCA+GGG | + | chr4_2:24349634-24349653 | None:intergenic | 25.0% |
| !! | TATGTGAGAAGATTATTTTC+AGG | + | chr4_2:24349635-24349654 | None:intergenic | 25.0% |
| ! | TAATTAGTCATCAACAAAAC+TGG | + | chr4_2:24349892-24349911 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | - | chr4_2:24350073-24350092 | Msa0595310:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | - | chr4_2:24350074-24350093 | Msa0595310:CDS | 25.0% |
| !! | TGAAACAAATGAGTTGAAAT+TGG | - | chr4_2:24350153-24350172 | Msa0595310:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | - | chr4_2:24350187-24350206 | Msa0595310:CDS | 25.0% |
| ! | TATAAGATTACACCTATATG+CGG | - | chr4_2:24350268-24350287 | Msa0595310:CDS | 25.0% |
| !! | ATACAGCTTTATAAATTCCA+TGG | - | chr4_2:24348498-24348517 | Msa0595310:CDS | 25.0% |
| !! | CTTAACAAAGATTTTGAATC+TGG | - | chr4_2:24348910-24348929 | Msa0595310:intron | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | - | chr4_2:24349147-24349166 | Msa0595310:intron | 25.0% |
| !!! | TCATTTTTCTTTTTTGAGTG+GGG | + | chr4_2:24349379-24349398 | None:intergenic | 25.0% |
| !!! | GTTCATTTTTCTTTTTTGAG+TGG | + | chr4_2:24349381-24349400 | None:intergenic | 25.0% |
| !!! | ATTGCTAAGTTTGATTTTTG+TGG | - | chr4_2:24349478-24349497 | Msa0595310:intron | 25.0% |
| !! | TTGTAGGTTTTCTTTATTAG+GGG | - | chr4_2:24349563-24349582 | Msa0595310:CDS | 25.0% |
| !! | ATGTGAGAAGATTATTTTCA+GGG | + | chr4_2:24349634-24349653 | None:intergenic | 25.0% |
| !! | TATGTGAGAAGATTATTTTC+AGG | + | chr4_2:24349635-24349654 | None:intergenic | 25.0% |
| ! | TAATTAGTCATCAACAAAAC+TGG | + | chr4_2:24349892-24349911 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | - | chr4_2:24350073-24350092 | Msa0595310:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | - | chr4_2:24350074-24350093 | Msa0595310:CDS | 25.0% |
| !! | TGAAACAAATGAGTTGAAAT+TGG | - | chr4_2:24350153-24350172 | Msa0595310:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | - | chr4_2:24350187-24350206 | Msa0595310:CDS | 25.0% |
| ! | TATAAGATTACACCTATATG+CGG | - | chr4_2:24350268-24350287 | Msa0595310:CDS | 25.0% |
| GCTAATTCATTAAGAGTCAT+TGG | + | chr4_2:24348580-24348599 | None:intergenic | 30.0% | |
| ! | AATACTATGCATTTAAGGTG+AGG | + | chr4_2:24349090-24349109 | None:intergenic | 30.0% |
| GGTCAAATACTATGCATTTA+AGG | + | chr4_2:24349095-24349114 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTACAACTTGTGGT+TGG | + | chr4_2:24349116-24349135 | None:intergenic | 30.0% |
| !!! | GACATGTTTTTTACAACTTG+TGG | + | chr4_2:24349120-24349139 | None:intergenic | 30.0% |
| CAAGTTGTAAAAAACATGTC+TGG | - | chr4_2:24349120-24349139 | Msa0595310:intron | 30.0% | |
| !!! | CATTTTTCTTTTTTGAGTGG+GGG | + | chr4_2:24349378-24349397 | None:intergenic | 30.0% |
| ACCAATCTTAAAATTGTCAG+CGG | - | chr4_2:24349749-24349768 | Msa0595310:CDS | 30.0% | |
| AATTAATTGCCGCTGATATA+AGG | - | chr4_2:24349804-24349823 | Msa0595310:CDS | 30.0% | |
| TGTTCATTACCTTATATCAG+CGG | + | chr4_2:24349816-24349835 | None:intergenic | 30.0% | |
| TGAATTGTCCTTAAGGATAT+TGG | - | chr4_2:24350042-24350061 | Msa0595310:CDS | 30.0% | |
| ! | AACTGCAAAAAAGCTATTTC+AGG | - | chr4_2:24350067-24350086 | Msa0595310:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | - | chr4_2:24350082-24350101 | Msa0595310:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | - | chr4_2:24350212-24350231 | Msa0595310:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | - | chr4_2:24350213-24350232 | Msa0595310:CDS | 30.0% | |
| GCTAATTCATTAAGAGTCAT+TGG | + | chr4_2:24348580-24348599 | None:intergenic | 30.0% | |
| ! | AATACTATGCATTTAAGGTG+AGG | + | chr4_2:24349090-24349109 | None:intergenic | 30.0% |
| GGTCAAATACTATGCATTTA+AGG | + | chr4_2:24349095-24349114 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTACAACTTGTGGT+TGG | + | chr4_2:24349116-24349135 | None:intergenic | 30.0% |
| !!! | GACATGTTTTTTACAACTTG+TGG | + | chr4_2:24349120-24349139 | None:intergenic | 30.0% |
| CAAGTTGTAAAAAACATGTC+TGG | - | chr4_2:24349120-24349139 | Msa0595310:intron | 30.0% | |
| !!! | CATTTTTCTTTTTTGAGTGG+GGG | + | chr4_2:24349378-24349397 | None:intergenic | 30.0% |
| ACCAATCTTAAAATTGTCAG+CGG | - | chr4_2:24349749-24349768 | Msa0595310:CDS | 30.0% | |
| AATTAATTGCCGCTGATATA+AGG | - | chr4_2:24349804-24349823 | Msa0595310:CDS | 30.0% | |
| TGTTCATTACCTTATATCAG+CGG | + | chr4_2:24349816-24349835 | None:intergenic | 30.0% | |
| TGAATTGTCCTTAAGGATAT+TGG | - | chr4_2:24350042-24350061 | Msa0595310:CDS | 30.0% | |
| ! | AACTGCAAAAAAGCTATTTC+AGG | - | chr4_2:24350067-24350086 | Msa0595310:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | - | chr4_2:24350082-24350101 | Msa0595310:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | - | chr4_2:24350212-24350231 | Msa0595310:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | - | chr4_2:24350213-24350232 | Msa0595310:CDS | 30.0% | |
| !!! | TAAGAGTCATTGGTTTTCCA+TGG | + | chr4_2:24348570-24348589 | None:intergenic | 35.0% |
| AAAGGACACTAACTTTCGAA+GGG | + | chr4_2:24348621-24348640 | None:intergenic | 35.0% | |
| TAAAGGACACTAACTTTCGA+AGG | + | chr4_2:24348622-24348641 | None:intergenic | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | - | chr4_2:24348775-24348794 | Msa0595310:intron | 35.0% |
| TAAGGTGAGGAAAAGTTTCA+TGG | + | chr4_2:24349077-24349096 | None:intergenic | 35.0% | |
| AAATAATCAAGGCCGTTCTT+TGG | - | chr4_2:24349273-24349292 | Msa0595310:intron | 35.0% | |
| AATAATCAAGGCCGTTCTTT+GGG | - | chr4_2:24349274-24349293 | Msa0595310:intron | 35.0% | |
| TCGGCTCTCATAGTAAAAAT+AGG | + | chr4_2:24349589-24349608 | None:intergenic | 35.0% | |
| TATCGCTGAAAAATGTCAAG+CGG | + | chr4_2:24349697-24349716 | None:intergenic | 35.0% | |
| !! | TACAGTGGATTTTGCATGAT+TGG | - | chr4_2:24350014-24350033 | Msa0595310:CDS | 35.0% |
| GGAATGATGAATTGTCCTTA+AGG | - | chr4_2:24350035-24350054 | Msa0595310:CDS | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | - | chr4_2:24350087-24350106 | Msa0595310:CDS | 35.0% | |
| GAGAAACTCATATTTGATGC+AGG | - | chr4_2:24350235-24350254 | Msa0595310:CDS | 35.0% | |
| ATAGACTTGAAACCGCATAT+AGG | + | chr4_2:24350283-24350302 | None:intergenic | 35.0% | |
| !!! | TAAGAGTCATTGGTTTTCCA+TGG | + | chr4_2:24348570-24348589 | None:intergenic | 35.0% |
| AAAGGACACTAACTTTCGAA+GGG | + | chr4_2:24348621-24348640 | None:intergenic | 35.0% | |
| TAAAGGACACTAACTTTCGA+AGG | + | chr4_2:24348622-24348641 | None:intergenic | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | - | chr4_2:24348775-24348794 | Msa0595310:intron | 35.0% |
| TAAGGTGAGGAAAAGTTTCA+TGG | + | chr4_2:24349077-24349096 | None:intergenic | 35.0% | |
| AAATAATCAAGGCCGTTCTT+TGG | - | chr4_2:24349273-24349292 | Msa0595310:intron | 35.0% | |
| AATAATCAAGGCCGTTCTTT+GGG | - | chr4_2:24349274-24349293 | Msa0595310:intron | 35.0% | |
| TCGGCTCTCATAGTAAAAAT+AGG | + | chr4_2:24349589-24349608 | None:intergenic | 35.0% | |
| TATCGCTGAAAAATGTCAAG+CGG | + | chr4_2:24349697-24349716 | None:intergenic | 35.0% | |
| !! | TACAGTGGATTTTGCATGAT+TGG | - | chr4_2:24350014-24350033 | Msa0595310:CDS | 35.0% |
| GGAATGATGAATTGTCCTTA+AGG | - | chr4_2:24350035-24350054 | Msa0595310:CDS | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | - | chr4_2:24350087-24350106 | Msa0595310:CDS | 35.0% | |
| GAGAAACTCATATTTGATGC+AGG | - | chr4_2:24350235-24350254 | Msa0595310:CDS | 35.0% | |
| ATAGACTTGAAACCGCATAT+AGG | + | chr4_2:24350283-24350302 | None:intergenic | 35.0% | |
| !!! | TCATTGGTTTTCCATGGTTG+TGG | + | chr4_2:24348564-24348583 | None:intergenic | 40.0% |
| ! | TTGCGTTTGCTAACACACAA+TGG | - | chr4_2:24348649-24348668 | Msa0595310:CDS | 40.0% |
| GCGAAAACAACACTGATGAA+TGG | - | chr4_2:24348679-24348698 | Msa0595310:CDS | 40.0% | |
| ACACTGATGAATGGCAAAGA+AGG | - | chr4_2:24348688-24348707 | Msa0595310:CDS | 40.0% | |
| GAGTATGTTTCAAGATGCCA+TGG | - | chr4_2:24348939-24348958 | Msa0595310:intron | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | - | chr4_2:24349002-24349021 | Msa0595310:intron | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | + | chr4_2:24349008-24349027 | None:intergenic | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_2:24349195-24349214 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_2:24349194-24349213 | Msa0595310:intron | 40.0% |
| ATAATCAAGGCCGTTCTTTG+GGG | - | chr4_2:24349275-24349294 | Msa0595310:intron | 40.0% | |
| TTCTTGAAGCCCATCACTTT+GGG | + | chr4_2:24349330-24349349 | None:intergenic | 40.0% | |
| TTTCTTGAAGCCCATCACTT+TGG | + | chr4_2:24349331-24349350 | None:intergenic | 40.0% | |
| !!! | TTTCTTTTTTGAGTGGGGGT+GGG | + | chr4_2:24349374-24349393 | None:intergenic | 40.0% |
| !!! | TTTTCTTTTTTGAGTGGGGG+TGG | + | chr4_2:24349375-24349394 | None:intergenic | 40.0% |
| TGCTCATTCGCTTATATCAG+TGG | - | chr4_2:24349661-24349680 | Msa0595310:CDS | 40.0% | |
| !!! | GCCGCTGACAATTTTAAGAT+TGG | + | chr4_2:24349753-24349772 | None:intergenic | 40.0% |
| GCAGTTCTCCAATATCCTTA+AGG | + | chr4_2:24350053-24350072 | None:intergenic | 40.0% | |
| !!! | TCATTGGTTTTCCATGGTTG+TGG | + | chr4_2:24348564-24348583 | None:intergenic | 40.0% |
| ! | TTGCGTTTGCTAACACACAA+TGG | - | chr4_2:24348649-24348668 | Msa0595310:CDS | 40.0% |
| GCGAAAACAACACTGATGAA+TGG | - | chr4_2:24348679-24348698 | Msa0595310:CDS | 40.0% | |
| ACACTGATGAATGGCAAAGA+AGG | - | chr4_2:24348688-24348707 | Msa0595310:CDS | 40.0% | |
| GAGTATGTTTCAAGATGCCA+TGG | - | chr4_2:24348939-24348958 | Msa0595310:intron | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | - | chr4_2:24349002-24349021 | Msa0595310:intron | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | + | chr4_2:24349008-24349027 | None:intergenic | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | + | chr4_2:24349195-24349214 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4_2:24349194-24349213 | Msa0595310:intron | 40.0% |
| ATAATCAAGGCCGTTCTTTG+GGG | - | chr4_2:24349275-24349294 | Msa0595310:intron | 40.0% | |
| TTCTTGAAGCCCATCACTTT+GGG | + | chr4_2:24349330-24349349 | None:intergenic | 40.0% | |
| TTTCTTGAAGCCCATCACTT+TGG | + | chr4_2:24349331-24349350 | None:intergenic | 40.0% | |
| !!! | TTTCTTTTTTGAGTGGGGGT+GGG | + | chr4_2:24349374-24349393 | None:intergenic | 40.0% |
| !!! | TTTTCTTTTTTGAGTGGGGG+TGG | + | chr4_2:24349375-24349394 | None:intergenic | 40.0% |
| TGCTCATTCGCTTATATCAG+TGG | - | chr4_2:24349661-24349680 | Msa0595310:CDS | 40.0% | |
| !!! | GCCGCTGACAATTTTAAGAT+TGG | + | chr4_2:24349753-24349772 | None:intergenic | 40.0% |
| GCAGTTCTCCAATATCCTTA+AGG | + | chr4_2:24350053-24350072 | None:intergenic | 40.0% | |
| TGGATTTCAGTACCAATGGC+AGG | - | chr4_2:24348428-24348447 | Msa0595310:CDS | 45.0% | |
| GGATTTCAGTACCAATGGCA+GGG | - | chr4_2:24348429-24348448 | Msa0595310:CDS | 45.0% | |
| ATCTGCTATGCCTAGTTCCA+CGG | + | chr4_2:24348536-24348555 | None:intergenic | 45.0% | |
| GCAAACGCAAGAGACGATAA+AGG | + | chr4_2:24348639-24348658 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCATTGAAGG+AGG | + | chr4_2:24348742-24348761 | None:intergenic | 45.0% |
| !! | CCACTGATGAGAAGCATTGA+AGG | + | chr4_2:24348745-24348764 | None:intergenic | 45.0% |
| CCTTCAATGCTTCTCATCAG+TGG | - | chr4_2:24348742-24348761 | Msa0595310:intron | 45.0% | |
| ! | TGAAGCACTCCGCTAACAAA+TGG | + | chr4_2:24348787-24348806 | None:intergenic | 45.0% |
| TGTGGCACTCCTCTAACAAA+TGG | - | chr4_2:24348824-24348843 | Msa0595310:intron | 45.0% | |
| ! | CTCAGTGAGCCATTTGTTAG+AGG | + | chr4_2:24348836-24348855 | None:intergenic | 45.0% |
| CTCTAACAAATGGCTCACTG+AGG | - | chr4_2:24348834-24348853 | Msa0595310:intron | 45.0% | |
| ! | CGCAAGAGGAGAGACATTTT+GGG | - | chr4_2:24348882-24348901 | Msa0595310:intron | 45.0% |
| GATTTGAGAATCAGCTGCCA+TGG | + | chr4_2:24348959-24348978 | None:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | - | chr4_2:24348997-24349016 | Msa0595310:intron | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | - | chr4_2:24349011-24349030 | Msa0595310:intron | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | - | chr4_2:24349021-24349040 | Msa0595310:intron | 45.0% |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_2:24349191-24349210 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_2:24349192-24349211 | None:intergenic | 45.0% | |
| TCTTTGCACTCCCCAAAGAA+CGG | + | chr4_2:24349288-24349307 | None:intergenic | 45.0% | |
| TGCAAAGAGCTCAATCAAGC+TGG | - | chr4_2:24349300-24349319 | Msa0595310:intron | 45.0% | |
| GCAAAGAGCTCAATCAAGCT+GGG | - | chr4_2:24349301-24349320 | Msa0595310:intron | 45.0% | |
| !!! | TTCTTTTTTGAGTGGGGGTG+GGG | + | chr4_2:24349373-24349392 | None:intergenic | 45.0% |
| !!! | ACCGCTGACGCTTTTAAGAT+CGG | - | chr4_2:24349722-24349741 | Msa0595310:CDS | 45.0% |
| !! | ACCGATCTTAAAAGCGTCAG+CGG | + | chr4_2:24349726-24349745 | None:intergenic | 45.0% |
| !! | TGCCACTCGGTATTTTTCAG+CGG | + | chr4_2:24349785-24349804 | None:intergenic | 45.0% |
| AGCGGCAATTAATTGCCACT+CGG | + | chr4_2:24349798-24349817 | None:intergenic | 45.0% | |
| TGGATTTCAGTACCAATGGC+AGG | - | chr4_2:24348428-24348447 | Msa0595310:CDS | 45.0% | |
| GGATTTCAGTACCAATGGCA+GGG | - | chr4_2:24348429-24348448 | Msa0595310:CDS | 45.0% | |
| ATCTGCTATGCCTAGTTCCA+CGG | + | chr4_2:24348536-24348555 | None:intergenic | 45.0% | |
| GCAAACGCAAGAGACGATAA+AGG | + | chr4_2:24348639-24348658 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCATTGAAGG+AGG | + | chr4_2:24348742-24348761 | None:intergenic | 45.0% |
| !! | CCACTGATGAGAAGCATTGA+AGG | + | chr4_2:24348745-24348764 | None:intergenic | 45.0% |
| CCTTCAATGCTTCTCATCAG+TGG | - | chr4_2:24348742-24348761 | Msa0595310:intron | 45.0% | |
| ! | TGAAGCACTCCGCTAACAAA+TGG | + | chr4_2:24348787-24348806 | None:intergenic | 45.0% |
| TGTGGCACTCCTCTAACAAA+TGG | - | chr4_2:24348824-24348843 | Msa0595310:intron | 45.0% | |
| ! | CTCAGTGAGCCATTTGTTAG+AGG | + | chr4_2:24348836-24348855 | None:intergenic | 45.0% |
| CTCTAACAAATGGCTCACTG+AGG | - | chr4_2:24348834-24348853 | Msa0595310:intron | 45.0% | |
| ! | CGCAAGAGGAGAGACATTTT+GGG | - | chr4_2:24348882-24348901 | Msa0595310:intron | 45.0% |
| GATTTGAGAATCAGCTGCCA+TGG | + | chr4_2:24348959-24348978 | None:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | - | chr4_2:24348997-24349016 | Msa0595310:intron | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | - | chr4_2:24349011-24349030 | Msa0595310:intron | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | - | chr4_2:24349021-24349040 | Msa0595310:intron | 45.0% |
| GTAAAACAGCATCTGCAGGA+GGG | + | chr4_2:24349191-24349210 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | + | chr4_2:24349192-24349211 | None:intergenic | 45.0% | |
| TCTTTGCACTCCCCAAAGAA+CGG | + | chr4_2:24349288-24349307 | None:intergenic | 45.0% | |
| TGCAAAGAGCTCAATCAAGC+TGG | - | chr4_2:24349300-24349319 | Msa0595310:intron | 45.0% | |
| GCAAAGAGCTCAATCAAGCT+GGG | - | chr4_2:24349301-24349320 | Msa0595310:intron | 45.0% | |
| !!! | TTCTTTTTTGAGTGGGGGTG+GGG | + | chr4_2:24349373-24349392 | None:intergenic | 45.0% |
| !!! | ACCGCTGACGCTTTTAAGAT+CGG | - | chr4_2:24349722-24349741 | Msa0595310:CDS | 45.0% |
| !! | ACCGATCTTAAAAGCGTCAG+CGG | + | chr4_2:24349726-24349745 | None:intergenic | 45.0% |
| !! | TGCCACTCGGTATTTTTCAG+CGG | + | chr4_2:24349785-24349804 | None:intergenic | 45.0% |
| AGCGGCAATTAATTGCCACT+CGG | + | chr4_2:24349798-24349817 | None:intergenic | 45.0% | |
| CTGAGTTTCTTCCCTGCCAT+TGG | + | chr4_2:24348443-24348462 | None:intergenic | 50.0% | |
| CTCAAATCAGCCGTGGAACT+AGG | - | chr4_2:24348523-24348542 | Msa0595310:CDS | 50.0% | |
| GCAGATGCAATCCACAACCA+TGG | - | chr4_2:24348550-24348569 | Msa0595310:CDS | 50.0% | |
| GGACACTAACTTTCGAAGGG+TGG | + | chr4_2:24348618-24348637 | None:intergenic | 50.0% | |
| ATCCATGTCGTCTGAACGTG+TGG | - | chr4_2:24348806-24348825 | Msa0595310:intron | 50.0% | |
| CAAATGGCTCACTGAGGACA+AGG | - | chr4_2:24348840-24348859 | Msa0595310:intron | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | - | chr4_2:24348868-24348887 | Msa0595310:intron | 50.0% |
| ! | GCGCAAGAGGAGAGACATTT+TGG | - | chr4_2:24348881-24348900 | Msa0595310:intron | 50.0% |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | - | chr4_2:24349024-24349043 | Msa0595310:intron | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | - | chr4_2:24349027-24349046 | Msa0595310:intron | 50.0% |
| TTGAAGCCCATCACTTTGGG+AGG | + | chr4_2:24349327-24349346 | None:intergenic | 50.0% | |
| TCCCTATGAAACTGGAGGCT+CGG | + | chr4_2:24349608-24349627 | None:intergenic | 50.0% | |
| TGCCGCTGAAAAATACCGAG+TGG | - | chr4_2:24349780-24349799 | Msa0595310:CDS | 50.0% | |
| CTGAGTTTCTTCCCTGCCAT+TGG | + | chr4_2:24348443-24348462 | None:intergenic | 50.0% | |
| CTCAAATCAGCCGTGGAACT+AGG | - | chr4_2:24348523-24348542 | Msa0595310:CDS | 50.0% | |
| GCAGATGCAATCCACAACCA+TGG | - | chr4_2:24348550-24348569 | Msa0595310:CDS | 50.0% | |
| GGACACTAACTTTCGAAGGG+TGG | + | chr4_2:24348618-24348637 | None:intergenic | 50.0% | |
| ATCCATGTCGTCTGAACGTG+TGG | - | chr4_2:24348806-24348825 | Msa0595310:intron | 50.0% | |
| CAAATGGCTCACTGAGGACA+AGG | - | chr4_2:24348840-24348859 | Msa0595310:intron | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | - | chr4_2:24348868-24348887 | Msa0595310:intron | 50.0% |
| ! | GCGCAAGAGGAGAGACATTT+TGG | - | chr4_2:24348881-24348900 | Msa0595310:intron | 50.0% |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | - | chr4_2:24349024-24349043 | Msa0595310:intron | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | - | chr4_2:24349027-24349046 | Msa0595310:intron | 50.0% |
| TTGAAGCCCATCACTTTGGG+AGG | + | chr4_2:24349327-24349346 | None:intergenic | 50.0% | |
| TCCCTATGAAACTGGAGGCT+CGG | + | chr4_2:24349608-24349627 | None:intergenic | 50.0% | |
| TGCCGCTGAAAAATACCGAG+TGG | - | chr4_2:24349780-24349799 | Msa0595310:CDS | 50.0% | |
| !! | CACGGCTGATTTGAGTGCCA+TGG | + | chr4_2:24348518-24348537 | None:intergenic | 55.0% |
| CATGGCACTCAAATCAGCCG+TGG | - | chr4_2:24348516-24348535 | Msa0595310:CDS | 55.0% | |
| TGCCACACGTTCAGACGACA+TGG | + | chr4_2:24348811-24348830 | None:intergenic | 55.0% | |
| GTTGATGTTGGAGGTGGCAC+AGG | - | chr4_2:24349033-24349052 | Msa0595310:intron | 55.0% | |
| AGCCGAGCCTCCAGTTTCAT+AGG | - | chr4_2:24349603-24349622 | Msa0595310:CDS | 55.0% | |
| GCCGAGCCTCCAGTTTCATA+GGG | - | chr4_2:24349604-24349623 | Msa0595310:CDS | 55.0% | |
| GGTCGTCCCTATGAAACTGG+AGG | + | chr4_2:24349613-24349632 | None:intergenic | 55.0% | |
| CAGGGTCGTCCCTATGAAAC+TGG | + | chr4_2:24349616-24349635 | None:intergenic | 55.0% | |
| !! | CACGGCTGATTTGAGTGCCA+TGG | + | chr4_2:24348518-24348537 | None:intergenic | 55.0% |
| CATGGCACTCAAATCAGCCG+TGG | - | chr4_2:24348516-24348535 | Msa0595310:CDS | 55.0% | |
| TGCCACACGTTCAGACGACA+TGG | + | chr4_2:24348811-24348830 | None:intergenic | 55.0% | |
| GTTGATGTTGGAGGTGGCAC+AGG | - | chr4_2:24349033-24349052 | Msa0595310:intron | 55.0% | |
| AGCCGAGCCTCCAGTTTCAT+AGG | - | chr4_2:24349603-24349622 | Msa0595310:CDS | 55.0% | |
| GCCGAGCCTCCAGTTTCATA+GGG | - | chr4_2:24349604-24349623 | Msa0595310:CDS | 55.0% | |
| GGTCGTCCCTATGAAACTGG+AGG | + | chr4_2:24349613-24349632 | None:intergenic | 55.0% | |
| CAGGGTCGTCCCTATGAAAC+TGG | + | chr4_2:24349616-24349635 | None:intergenic | 55.0% | |
| GATGTTGGAGGTGGCACAGG+AGG | - | chr4_2:24349036-24349055 | Msa0595310:intron | 60.0% | |
| AGCTGGGCCTCCCAAAGTGA+TGG | - | chr4_2:24349317-24349336 | Msa0595310:intron | 60.0% | |
| GCTGGGCCTCCCAAAGTGAT+GGG | - | chr4_2:24349318-24349337 | Msa0595310:intron | 60.0% | |
| GATGTTGGAGGTGGCACAGG+AGG | - | chr4_2:24349036-24349055 | Msa0595310:intron | 60.0% | |
| AGCTGGGCCTCCCAAAGTGA+TGG | - | chr4_2:24349317-24349336 | Msa0595310:intron | 60.0% | |
| GCTGGGCCTCCCAAAGTGAT+GGG | - | chr4_2:24349318-24349337 | Msa0595310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 24348427 | 24350321 | 24348427 | ID=Msa0595310;Name=Msa0595310 |
| chr4_2 | mRNA | 24348427 | 24350321 | 24348427 | ID=Msa0595310-mRNA-1;Parent=Msa0595310;Name=Msa0595310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|363 |
| chr4_2 | exon | 24349533 | 24350321 | 24349533 | ID=Msa0595310-mRNA-1:exon:6564;Parent=Msa0595310-mRNA-1 |
| chr4_2 | exon | 24348427 | 24348729 | 24348427 | ID=Msa0595310-mRNA-1:exon:6563;Parent=Msa0595310-mRNA-1 |
| chr4_2 | CDS | 24349533 | 24350321 | 24349533 | ID=Msa0595310-mRNA-1:cds;Parent=Msa0595310-mRNA-1 |
| chr4_2 | CDS | 24348427 | 24348729 | 24348427 | ID=Msa0595310-mRNA-1:cds;Parent=Msa0595310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
