Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139120 | sp|O24305|M3OM1_PEA | 73.333 | 270 | 70 | 1 | 5 | 274 | 93 | 360 | 5.60e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139120 | Q06YR0 | 92.336 | 274 | 21 | 0 | 1 | 274 | 90 | 363 | 3.88e-178 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139120 | Msa0595310 | 0.855700 | 5.292414e-62 | -8.615850e-47 |
| Msa0139120 | Msa1179660 | 0.820283 | 7.444726e-53 | -8.615850e-47 |
| Msa0139120 | Msa1275160 | 0.815458 | 9.151861e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139120 | MtrunA17_Chr4g0014681 | 92.336 | 274 | 21 | 0 | 1 | 274 | 90 | 363 | 0.0 | 504 |
| Msa0139120 | MtrunA17_Chr4g0014561 | 91.606 | 274 | 23 | 0 | 1 | 274 | 90 | 363 | 7.69e-180 | 499 |
| Msa0139120 | MtrunA17_Chr4g0014641 | 86.861 | 274 | 36 | 0 | 1 | 274 | 90 | 363 | 3.51e-172 | 479 |
| Msa0139120 | MtrunA17_Chr4g0046361 | 72.015 | 268 | 75 | 0 | 7 | 274 | 94 | 361 | 8.83e-145 | 410 |
| Msa0139120 | MtrunA17_Chr4g0014661 | 75.746 | 268 | 65 | 0 | 7 | 274 | 90 | 357 | 8.06e-140 | 397 |
| Msa0139120 | MtrunA17_Chr4g0046341 | 73.864 | 264 | 69 | 0 | 11 | 274 | 101 | 364 | 1.05e-135 | 387 |
| Msa0139120 | MtrunA17_Chr4g0014591 | 74.627 | 268 | 68 | 0 | 7 | 274 | 90 | 357 | 9.04e-130 | 372 |
| Msa0139120 | MtrunA17_Chr5g0432251 | 51.111 | 270 | 127 | 4 | 7 | 274 | 93 | 359 | 3.76e-93 | 279 |
| Msa0139120 | MtrunA17_Chr5g0432301 | 51.825 | 274 | 127 | 4 | 2 | 273 | 89 | 359 | 9.41e-93 | 278 |
| Msa0139120 | MtrunA17_Chr7g0219141 | 47.985 | 273 | 138 | 3 | 2 | 274 | 89 | 357 | 3.47e-91 | 274 |
| Msa0139120 | MtrunA17_Chr4g0014601 | 71.930 | 171 | 48 | 0 | 7 | 177 | 90 | 260 | 4.95e-91 | 270 |
| Msa0139120 | MtrunA17_Chr1g0188391 | 50.182 | 275 | 130 | 5 | 3 | 274 | 91 | 361 | 7.46e-91 | 273 |
| Msa0139120 | MtrunA17_Chr5g0432241 | 50.545 | 275 | 131 | 4 | 2 | 274 | 89 | 360 | 1.29e-90 | 272 |
| Msa0139120 | MtrunA17_Chr7g0219161 | 50.763 | 262 | 123 | 5 | 2 | 262 | 89 | 345 | 7.95e-90 | 270 |
| Msa0139120 | MtrunA17_Chr7g0223231 | 48.699 | 269 | 131 | 3 | 4 | 272 | 87 | 348 | 7.96e-89 | 268 |
| Msa0139120 | MtrunA17_Chr4g0046531 | 51.471 | 272 | 128 | 3 | 4 | 274 | 450 | 718 | 2.85e-86 | 271 |
| Msa0139120 | MtrunA17_Chr4g0046531 | 51.661 | 271 | 127 | 3 | 4 | 273 | 88 | 355 | 5.00e-86 | 271 |
| Msa0139120 | MtrunA17_Chr7g0223241 | 51.145 | 262 | 121 | 3 | 11 | 272 | 94 | 348 | 3.89e-86 | 261 |
| Msa0139120 | MtrunA17_Chr5g0432261 | 47.778 | 270 | 112 | 2 | 5 | 274 | 87 | 327 | 6.07e-84 | 254 |
| Msa0139120 | MtrunA17_Chr5g0432211 | 50.813 | 246 | 116 | 4 | 31 | 274 | 103 | 345 | 1.79e-81 | 249 |
| Msa0139120 | MtrunA17_Chr4g0040621 | 45.985 | 274 | 145 | 2 | 2 | 274 | 98 | 369 | 3.74e-81 | 249 |
| Msa0139120 | MtrunA17_Chr1g0188371 | 45.865 | 266 | 135 | 5 | 5 | 264 | 91 | 353 | 3.75e-71 | 223 |
| Msa0139120 | MtrunA17_Chr7g0219171 | 57.463 | 134 | 56 | 1 | 141 | 274 | 116 | 248 | 1.32e-49 | 164 |
| Msa0139120 | MtrunA17_Chr3g0121301 | 36.882 | 263 | 158 | 6 | 11 | 270 | 100 | 357 | 5.09e-46 | 158 |
| Msa0139120 | MtrunA17_Chr4g0021981 | 35.316 | 269 | 166 | 6 | 9 | 274 | 105 | 368 | 3.24e-43 | 150 |
| Msa0139120 | MtrunA17_Chr4g0022021 | 35.316 | 269 | 166 | 6 | 9 | 274 | 105 | 368 | 1.14e-42 | 149 |
| Msa0139120 | MtrunA17_Chr1g0163601 | 32.692 | 260 | 168 | 4 | 3 | 261 | 102 | 355 | 5.77e-42 | 147 |
| Msa0139120 | MtrunA17_Chr1g0163611 | 31.752 | 274 | 178 | 5 | 3 | 273 | 102 | 369 | 1.13e-41 | 147 |
| Msa0139120 | MtrunA17_Chr7g0218301 | 33.700 | 273 | 169 | 7 | 3 | 272 | 107 | 370 | 2.24e-41 | 146 |
| Msa0139120 | MtrunA17_Chr1g0200491 | 33.205 | 259 | 166 | 4 | 4 | 261 | 106 | 358 | 2.80e-41 | 145 |
| Msa0139120 | MtrunA17_Chr7g0218271 | 32.967 | 273 | 171 | 7 | 3 | 272 | 107 | 370 | 3.24e-41 | 145 |
| Msa0139120 | MtrunA17_Chr7g0218131 | 35.223 | 247 | 151 | 5 | 29 | 273 | 130 | 369 | 5.27e-41 | 145 |
| Msa0139120 | MtrunA17_Chr7g0218181 | 31.206 | 282 | 170 | 7 | 3 | 273 | 98 | 366 | 1.61e-40 | 144 |
| Msa0139120 | MtrunA17_Chr8g0367501 | 34.686 | 271 | 167 | 6 | 4 | 272 | 98 | 360 | 1.68e-40 | 144 |
| Msa0139120 | MtrunA17_Chr2g0307521 | 33.198 | 247 | 151 | 6 | 29 | 272 | 123 | 358 | 1.65e-38 | 138 |
| Msa0139120 | MtrunA17_Chr8g0367441 | 34.252 | 254 | 158 | 5 | 4 | 255 | 112 | 358 | 3.53e-38 | 137 |
| Msa0139120 | MtrunA17_Chr8g0367491 | 33.459 | 266 | 167 | 6 | 4 | 266 | 111 | 369 | 3.69e-38 | 137 |
| Msa0139120 | MtrunA17_Chr4g0014611 | 81.000 | 100 | 19 | 0 | 175 | 274 | 8 | 107 | 4.00e-38 | 130 |
| Msa0139120 | MtrunA17_Chr5g0448091 | 38.164 | 207 | 121 | 4 | 61 | 266 | 154 | 354 | 4.09e-38 | 137 |
| Msa0139120 | MtrunA17_Chr7g0218261 | 31.734 | 271 | 176 | 5 | 3 | 272 | 101 | 363 | 1.40e-37 | 136 |
| Msa0139120 | MtrunA17_Chr7g0218211 | 32.721 | 272 | 173 | 5 | 3 | 272 | 101 | 364 | 1.44e-37 | 136 |
| Msa0139120 | MtrunA17_Chr8g0367451 | 34.615 | 260 | 159 | 6 | 4 | 259 | 111 | 363 | 1.97e-37 | 135 |
| Msa0139120 | MtrunA17_Chr3g0128011 | 39.303 | 201 | 116 | 3 | 61 | 260 | 208 | 403 | 8.69e-37 | 135 |
| Msa0139120 | MtrunA17_Chr1g0163621 | 31.154 | 260 | 172 | 4 | 3 | 261 | 116 | 369 | 9.22e-37 | 134 |
| Msa0139120 | MtrunA17_Chr8g0345851 | 33.080 | 263 | 165 | 6 | 3 | 261 | 22 | 277 | 1.42e-36 | 131 |
| Msa0139120 | MtrunA17_Chr2g0314271 | 33.704 | 270 | 169 | 6 | 6 | 271 | 88 | 351 | 3.13e-35 | 129 |
| Msa0139120 | MtrunA17_Chr7g0276401 | 36.585 | 205 | 122 | 4 | 61 | 264 | 166 | 363 | 2.83e-34 | 127 |
| Msa0139120 | MtrunA17_Chr7g0276411 | 36.500 | 200 | 121 | 3 | 61 | 259 | 153 | 347 | 4.29e-34 | 126 |
| Msa0139120 | MtrunA17_Chr3g0085201 | 30.769 | 260 | 172 | 5 | 3 | 261 | 91 | 343 | 1.16e-31 | 120 |
| Msa0139120 | MtrunA17_Chr8g0367381 | 36.813 | 182 | 109 | 3 | 61 | 241 | 149 | 325 | 2.70e-31 | 118 |
| Msa0139120 | MtrunA17_Chr3g0085211 | 37.989 | 179 | 107 | 2 | 83 | 261 | 182 | 356 | 4.95e-31 | 118 |
| Msa0139120 | MtrunA17_Chr3g0130011 | 29.856 | 278 | 183 | 7 | 1 | 273 | 87 | 357 | 1.68e-29 | 114 |
| Msa0139120 | MtrunA17_Chr4g0014671 | 76.190 | 105 | 25 | 0 | 170 | 274 | 30 | 134 | 3.03e-29 | 107 |
| Msa0139120 | MtrunA17_Chr3g0130061 | 30.631 | 222 | 146 | 4 | 53 | 271 | 139 | 355 | 1.21e-27 | 109 |
| Msa0139120 | MtrunA17_Chr4g0014621 | 78.788 | 66 | 14 | 0 | 209 | 274 | 197 | 262 | 4.37e-22 | 92.4 |
| Msa0139120 | MtrunA17_Chr6g0482291 | 30.814 | 172 | 107 | 3 | 89 | 259 | 1 | 161 | 7.71e-21 | 87.0 |
| Msa0139120 | MtrunA17_Chr8g0367461 | 40.741 | 108 | 59 | 3 | 161 | 266 | 1 | 105 | 2.90e-19 | 80.9 |
| Msa0139120 | MtrunA17_Chr4g0014551 | 97.727 | 44 | 1 | 0 | 231 | 274 | 1 | 44 | 9.83e-16 | 69.7 |
| Msa0139120 | MtrunA17_Chr8g0367401 | 35.135 | 111 | 70 | 1 | 64 | 174 | 2 | 110 | 2.77e-15 | 71.2 |
| Msa0139120 | MtrunA17_Chr1g0170941 | 45.455 | 66 | 36 | 0 | 107 | 172 | 11 | 76 | 1.16e-13 | 65.1 |
| Msa0139120 | MtrunA17_Chr8g0367391 | 34.483 | 116 | 69 | 4 | 147 | 259 | 8 | 119 | 3.63e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139120 | AT1G51990.2 | 35.125 | 279 | 168 | 8 | 1 | 274 | 92 | 362 | 3.60e-41 | 145 |
| Msa0139120 | AT1G51990.1 | 35.125 | 279 | 168 | 8 | 1 | 274 | 92 | 362 | 1.98e-40 | 144 |
| Msa0139120 | AT1G77520.1 | 31.522 | 276 | 178 | 6 | 2 | 273 | 112 | 380 | 2.47e-36 | 133 |
| Msa0139120 | AT5G54160.1 | 36.139 | 202 | 123 | 3 | 61 | 261 | 152 | 348 | 2.29e-35 | 130 |
| Msa0139120 | AT4G35150.1 | 34.101 | 217 | 130 | 5 | 66 | 273 | 111 | 323 | 5.08e-35 | 128 |
| Msa0139120 | AT1G33030.1 | 30.000 | 270 | 176 | 7 | 1 | 264 | 80 | 342 | 3.47e-32 | 121 |
| Msa0139120 | AT4G35160.1 | 33.214 | 280 | 165 | 9 | 10 | 273 | 107 | 380 | 4.13e-31 | 119 |
| Msa0139120 | AT1G63140.4 | 35.349 | 215 | 132 | 4 | 61 | 273 | 191 | 400 | 7.01e-29 | 114 |
| Msa0139120 | AT1G63140.2 | 35.349 | 215 | 132 | 4 | 61 | 273 | 171 | 380 | 8.05e-29 | 113 |
| Msa0139120 | AT5G53810.1 | 31.408 | 277 | 178 | 6 | 2 | 273 | 108 | 377 | 1.26e-28 | 112 |
| Msa0139120 | AT3G53140.1 | 31.111 | 270 | 176 | 7 | 6 | 271 | 93 | 356 | 1.89e-28 | 112 |
| Msa0139120 | AT1G77530.1 | 35.470 | 234 | 142 | 5 | 42 | 273 | 154 | 380 | 1.90e-28 | 112 |
| Msa0139120 | AT1G62900.1 | 35.938 | 192 | 118 | 3 | 84 | 273 | 16 | 204 | 1.32e-26 | 103 |
| Msa0139120 | AT5G37170.2 | 30.928 | 194 | 128 | 4 | 83 | 273 | 43 | 233 | 1.71e-23 | 95.9 |
| Msa0139120 | AT5G37170.1 | 30.928 | 194 | 128 | 4 | 83 | 273 | 143 | 333 | 3.75e-23 | 97.1 |
| Msa0139120 | AT5G37170.3 | 33.333 | 174 | 107 | 5 | 106 | 273 | 15 | 185 | 2.12e-22 | 92.0 |
| Msa0139120 | AT1G76790.1 | 31.884 | 207 | 118 | 7 | 66 | 266 | 162 | 351 | 2.13e-21 | 92.8 |
| Msa0139120 | AT1G21130.1 | 26.692 | 266 | 174 | 8 | 5 | 261 | 107 | 360 | 2.17e-19 | 87.0 |
| Msa0139120 | AT1G21100.1 | 28.761 | 226 | 143 | 7 | 42 | 261 | 147 | 360 | 3.24e-19 | 86.7 |
| Msa0139120 | AT1G21110.1 | 26.437 | 261 | 171 | 8 | 6 | 257 | 108 | 356 | 9.77e-19 | 85.1 |
| Msa0139120 | AT1G21120.1 | 32.609 | 138 | 88 | 3 | 126 | 261 | 226 | 360 | 4.38e-18 | 83.6 |
| Msa0139120 | AT1G21120.2 | 32.609 | 138 | 88 | 3 | 126 | 261 | 274 | 408 | 7.89e-18 | 83.2 |
| Msa0139120 | AT1G63140.1 | 35.965 | 114 | 71 | 1 | 61 | 174 | 191 | 302 | 1.14e-11 | 64.3 |
Find 44 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCAAGAGGAGAGACATTT+TGG | 0.134700 | 1_3:+72416423 | Msa0139120:CDS |
| ATGATGATGACTTTGTTAAA+TGG | 0.247172 | 1_3:+72417366 | Msa0139120:CDS |
| TGAAACAAATGAGTTGAAAT+TGG | 0.279186 | 1_3:+72417332 | Msa0139120:CDS |
| TGAATTGTCCTTAAGGATAT+TGG | 0.289913 | 1_3:+72417221 | Msa0139120:CDS |
| CTCAGTGAGCCATTTGTTAG+AGG | 0.332609 | 1_3:-72416375 | None:intergenic |
| CTTAACAAAGATTCTGAATC+TGG | 0.352374 | 1_3:+72416452 | Msa0139120:CDS |
| TAGCCATGTGTTTGAAGGTT+TGG | 0.381600 | 1_3:+72416544 | Msa0139120:CDS |
| AAGAAAGAGAGAAGAAAGAA+TGG | 0.382447 | 1_3:+72417391 | Msa0139120:CDS |
| AACGAAAATTTGAAATTTGT+TGG | 0.401585 | 1_3:+72416686 | Msa0139120:CDS |
| TGAGGTGAGGAAAAGTTTCA+TGG | 0.410589 | 1_3:-72416616 | None:intergenic |
| GAGTGTAGCCATGTGTTTGA+AGG | 0.425506 | 1_3:+72416539 | Msa0139120:CDS |
| GTTTGAAGGTTTGGAGTCTC+TGG | 0.426025 | 1_3:+72416553 | Msa0139120:CDS |
| GGAATGATGAATTGTCCTTA+AGG | 0.441769 | 1_3:+72417214 | Msa0139120:CDS |
| CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 1_3:-72416284 | None:intergenic |
| GCAGTTCTCCAATATCCTTA+AGG | 0.450113 | 1_3:-72417229 | None:intergenic |
| GTTGATGTTGGAGGTGGCAC+AGG | 0.461040 | 1_3:+72416575 | Msa0139120:CDS |
| AGAAAGAGAGAAGAAAGAAT+GGG | 0.494469 | 1_3:+72417392 | Msa0139120:CDS |
| TTGGAGTCTCTGGTTGATGT+TGG | 0.495110 | 1_3:+72416563 | Msa0139120:CDS |
| GAAAATTTGAAATTTGTTGG+TGG | 0.495217 | 1_3:+72416689 | Msa0139120:CDS |
| GGTCAAATACTATGCATTTG+AGG | 0.496242 | 1_3:-72416634 | None:intergenic |
| GAGTCTCTGGTTGATGTTGG+AGG | 0.503583 | 1_3:+72416566 | Msa0139120:CDS |
| AGTCTCTTTGAGAGCGCAAG+AGG | 0.511386 | 1_3:+72416410 | Msa0139120:CDS |
| TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | 1_3:-72416326 | None:intergenic |
| TGTGGCACTCCTCTAACAAA+TGG | 0.518573 | 1_3:+72416366 | Msa0139120:CDS |
| GATGTTGGAGGTGGCACAGG+AGG | 0.520874 | 1_3:+72416578 | Msa0139120:CDS |
| TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | 1_3:+72416317 | Msa0139120:CDS |
| ATAGACTTGAAACCGCATAT+AGG | 0.541344 | 1_3:-72417459 | None:intergenic |
| ATCCATGTCGTCTGAACGTG+TGG | 0.545741 | 1_3:+72416348 | Msa0139120:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 1_3:-72416734 | None:intergenic |
| GAGTATGTTTCAAGATGCCA+TGG | 0.571374 | 1_3:+72416481 | Msa0139120:CDS |
| CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 1_3:+72416284 | Msa0139120:CDS |
| CAAATGGCTCACTGAGGACA+AGG | 0.577988 | 1_3:+72416382 | Msa0139120:CDS |
| GATTTGAGAATCAGCTGCCA+TGG | 0.583476 | 1_3:-72416498 | None:intergenic |
| TCTCTGGTTGATGTTGGAGG+TGG | 0.586831 | 1_3:+72416569 | Msa0139120:CDS |
| TGCCACACGTTCAGACGACA+TGG | 0.594397 | 1_3:-72416350 | None:intergenic |
| AATACTATGCATTTGAGGTG+AGG | 0.609052 | 1_3:-72416629 | None:intergenic |
| ACACTGATGAATGACAAAGA+AGG | 0.622288 | 1_3:+72416230 | None:intergenic |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 1_3:-72416731 | None:intergenic |
| GAGAAACTCATATTTGACGC+AGG | 0.638948 | 1_3:+72417414 | Msa0139120:CDS |
| TATAAGATTACACCTATATG+CGG | 0.666581 | 1_3:+72417447 | Msa0139120:CDS |
| CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 1_3:-72416281 | None:intergenic |
| ACTCCAAACCTTCAAACACA+TGG | 0.677292 | 1_3:-72416547 | None:intergenic |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 1_3:-72416730 | None:intergenic |
| CTCTAACAAATGGCTCACTG+AGG | 0.728882 | 1_3:+72416376 | Msa0139120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAAAACATATTTTTTTT+AGG | + | chr1_3:72416779-72416798 | Msa0139120:intron | 10.0% |
| !!! | GATTAAAACATATTTTTTTT+AGG | + | chr1_3:72416779-72416798 | Msa0139120:intron | 10.0% |
| !!! | AACGAAAATTTGAAATTTGT+TGG | + | chr1_3:72416686-72416705 | Msa0139120:CDS | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | + | chr1_3:72417031-72417050 | Msa0139120:intron | 20.0% |
| !! | CTAATTAATCTTTGCAATAA+AGG | + | chr1_3:72417084-72417103 | Msa0139120:intron | 20.0% |
| !!! | GATAAATTCTTTTTTTACAG+TGG | + | chr1_3:72417178-72417197 | Msa0139120:intron | 20.0% |
| !!! | AACGAAAATTTGAAATTTGT+TGG | + | chr1_3:72416686-72416705 | Msa0139120:CDS | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | + | chr1_3:72417031-72417050 | Msa0139120:intron | 20.0% |
| !! | CTAATTAATCTTTGCAATAA+AGG | + | chr1_3:72417084-72417103 | Msa0139120:intron | 20.0% |
| !!! | GATAAATTCTTTTTTTACAG+TGG | + | chr1_3:72417178-72417197 | Msa0139120:intron | 20.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | chr1_3:72416689-72416708 | Msa0139120:CDS | 25.0% |
| ! | TAATTAGTCATCAACAAAAC+TGG | - | chr1_3:72417071-72417090 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | chr1_3:72417252-72417271 | Msa0139120:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | chr1_3:72417253-72417272 | Msa0139120:CDS | 25.0% |
| !! | TGAAACAAATGAGTTGAAAT+TGG | + | chr1_3:72417332-72417351 | Msa0139120:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | chr1_3:72417366-72417385 | Msa0139120:CDS | 25.0% |
| ! | TATAAGATTACACCTATATG+CGG | + | chr1_3:72417447-72417466 | Msa0139120:CDS | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | chr1_3:72416689-72416708 | Msa0139120:CDS | 25.0% |
| ! | TAATTAGTCATCAACAAAAC+TGG | - | chr1_3:72417071-72417090 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | chr1_3:72417252-72417271 | Msa0139120:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | chr1_3:72417253-72417272 | Msa0139120:CDS | 25.0% |
| !! | TGAAACAAATGAGTTGAAAT+TGG | + | chr1_3:72417332-72417351 | Msa0139120:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | chr1_3:72417366-72417385 | Msa0139120:CDS | 25.0% |
| ! | TATAAGATTACACCTATATG+CGG | + | chr1_3:72417447-72417466 | Msa0139120:CDS | 25.0% |
| CTTAACAAAGATTCTGAATC+TGG | + | chr1_3:72416452-72416471 | Msa0139120:CDS | 30.0% | |
| !!! | TGTTTTTTACAACTTGTGGT+TGG | - | chr1_3:72416658-72416677 | None:intergenic | 30.0% |
| !!! | GACATGTTTTTTACAACTTG+TGG | - | chr1_3:72416662-72416681 | None:intergenic | 30.0% |
| CAAGTTGTAAAAAACATGTC+TGG | + | chr1_3:72416662-72416681 | Msa0139120:CDS | 30.0% | |
| ACCAATCTTAAAATTGTCAG+CGG | + | chr1_3:72416928-72416947 | Msa0139120:intron | 30.0% | |
| AATTAATTGCCGCTGATATA+AGG | + | chr1_3:72416983-72417002 | Msa0139120:intron | 30.0% | |
| TGTTCATTACCTTATATCAG+CGG | - | chr1_3:72416995-72417014 | None:intergenic | 30.0% | |
| TGAATTGTCCTTAAGGATAT+TGG | + | chr1_3:72417221-72417240 | Msa0139120:CDS | 30.0% | |
| ! | AACTGCAAAAAAGCTATTTC+AGG | + | chr1_3:72417246-72417265 | Msa0139120:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr1_3:72417261-72417280 | Msa0139120:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | chr1_3:72417391-72417410 | Msa0139120:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | chr1_3:72417392-72417411 | Msa0139120:CDS | 30.0% | |
| CTTAACAAAGATTCTGAATC+TGG | + | chr1_3:72416452-72416471 | Msa0139120:CDS | 30.0% | |
| !!! | TGTTTTTTACAACTTGTGGT+TGG | - | chr1_3:72416658-72416677 | None:intergenic | 30.0% |
| !!! | GACATGTTTTTTACAACTTG+TGG | - | chr1_3:72416662-72416681 | None:intergenic | 30.0% |
| CAAGTTGTAAAAAACATGTC+TGG | + | chr1_3:72416662-72416681 | Msa0139120:CDS | 30.0% | |
| ACCAATCTTAAAATTGTCAG+CGG | + | chr1_3:72416928-72416947 | Msa0139120:intron | 30.0% | |
| AATTAATTGCCGCTGATATA+AGG | + | chr1_3:72416983-72417002 | Msa0139120:intron | 30.0% | |
| TGTTCATTACCTTATATCAG+CGG | - | chr1_3:72416995-72417014 | None:intergenic | 30.0% | |
| TGAATTGTCCTTAAGGATAT+TGG | + | chr1_3:72417221-72417240 | Msa0139120:CDS | 30.0% | |
| ! | AACTGCAAAAAAGCTATTTC+AGG | + | chr1_3:72417246-72417265 | Msa0139120:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr1_3:72417261-72417280 | Msa0139120:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | chr1_3:72417391-72417410 | Msa0139120:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | chr1_3:72417392-72417411 | Msa0139120:CDS | 30.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | + | chr1_3:72416317-72416336 | Msa0139120:CDS | 35.0% |
| ! | AATACTATGCATTTGAGGTG+AGG | - | chr1_3:72416632-72416651 | None:intergenic | 35.0% |
| GGTCAAATACTATGCATTTG+AGG | - | chr1_3:72416637-72416656 | None:intergenic | 35.0% | |
| TATCGCTGAAAAATGTCAAG+CGG | - | chr1_3:72416876-72416895 | None:intergenic | 35.0% | |
| !! | TACAGTGGATTTTGCATGAT+TGG | + | chr1_3:72417193-72417212 | Msa0139120:intron | 35.0% |
| GGAATGATGAATTGTCCTTA+AGG | + | chr1_3:72417214-72417233 | Msa0139120:CDS | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | + | chr1_3:72417266-72417285 | Msa0139120:CDS | 35.0% | |
| ATAGACTTGAAACCGCATAT+AGG | - | chr1_3:72417462-72417481 | None:intergenic | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | + | chr1_3:72416317-72416336 | Msa0139120:CDS | 35.0% |
| ! | AATACTATGCATTTGAGGTG+AGG | - | chr1_3:72416632-72416651 | None:intergenic | 35.0% |
| GGTCAAATACTATGCATTTG+AGG | - | chr1_3:72416637-72416656 | None:intergenic | 35.0% | |
| TATCGCTGAAAAATGTCAAG+CGG | - | chr1_3:72416876-72416895 | None:intergenic | 35.0% | |
| !! | TACAGTGGATTTTGCATGAT+TGG | + | chr1_3:72417193-72417212 | Msa0139120:intron | 35.0% |
| GGAATGATGAATTGTCCTTA+AGG | + | chr1_3:72417214-72417233 | Msa0139120:CDS | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | + | chr1_3:72417266-72417285 | Msa0139120:CDS | 35.0% | |
| ATAGACTTGAAACCGCATAT+AGG | - | chr1_3:72417462-72417481 | None:intergenic | 35.0% | |
| GAGTATGTTTCAAGATGCCA+TGG | + | chr1_3:72416481-72416500 | Msa0139120:CDS | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | chr1_3:72416544-72416563 | Msa0139120:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | chr1_3:72416550-72416569 | None:intergenic | 40.0% | |
| TGAGGTGAGGAAAAGTTTCA+TGG | - | chr1_3:72416619-72416638 | None:intergenic | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr1_3:72416737-72416756 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr1_3:72416736-72416755 | Msa0139120:CDS | 40.0% |
| TGCTCATTCGCTTATATCAG+TGG | + | chr1_3:72416840-72416859 | Msa0139120:intron | 40.0% | |
| !!! | GCCGCTGACAATTTTAAGAT+TGG | - | chr1_3:72416932-72416951 | None:intergenic | 40.0% |
| GCAGTTCTCCAATATCCTTA+AGG | - | chr1_3:72417232-72417251 | None:intergenic | 40.0% | |
| GAGAAACTCATATTTGACGC+AGG | + | chr1_3:72417414-72417433 | Msa0139120:CDS | 40.0% | |
| GAGTATGTTTCAAGATGCCA+TGG | + | chr1_3:72416481-72416500 | Msa0139120:CDS | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | chr1_3:72416544-72416563 | Msa0139120:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | chr1_3:72416550-72416569 | None:intergenic | 40.0% | |
| TGAGGTGAGGAAAAGTTTCA+TGG | - | chr1_3:72416619-72416638 | None:intergenic | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr1_3:72416737-72416756 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr1_3:72416736-72416755 | Msa0139120:CDS | 40.0% |
| TGCTCATTCGCTTATATCAG+TGG | + | chr1_3:72416840-72416859 | Msa0139120:intron | 40.0% | |
| !!! | GCCGCTGACAATTTTAAGAT+TGG | - | chr1_3:72416932-72416951 | None:intergenic | 40.0% |
| GCAGTTCTCCAATATCCTTA+AGG | - | chr1_3:72417232-72417251 | None:intergenic | 40.0% | |
| GAGAAACTCATATTTGACGC+AGG | + | chr1_3:72417414-72417433 | Msa0139120:CDS | 40.0% | |
| !! | CTGATGAGAAGCATTGAAGG+AGG | - | chr1_3:72416284-72416303 | None:intergenic | 45.0% |
| !! | CCACTGATGAGAAGCATTGA+AGG | - | chr1_3:72416287-72416306 | None:intergenic | 45.0% |
| CCTTCAATGCTTCTCATCAG+TGG | + | chr1_3:72416284-72416303 | Msa0139120:CDS | 45.0% | |
| ! | TGAAGCACTCCGCTAACAAA+TGG | - | chr1_3:72416329-72416348 | None:intergenic | 45.0% |
| TGTGGCACTCCTCTAACAAA+TGG | + | chr1_3:72416366-72416385 | Msa0139120:CDS | 45.0% | |
| ! | CTCAGTGAGCCATTTGTTAG+AGG | - | chr1_3:72416378-72416397 | None:intergenic | 45.0% |
| CTCTAACAAATGGCTCACTG+AGG | + | chr1_3:72416376-72416395 | Msa0139120:CDS | 45.0% | |
| ! | CGCAAGAGGAGAGACATTTT+GGG | + | chr1_3:72416424-72416443 | Msa0139120:CDS | 45.0% |
| GATTTGAGAATCAGCTGCCA+TGG | - | chr1_3:72416501-72416520 | None:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | + | chr1_3:72416539-72416558 | Msa0139120:CDS | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | chr1_3:72416553-72416572 | Msa0139120:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | chr1_3:72416563-72416582 | Msa0139120:CDS | 45.0% |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr1_3:72416733-72416752 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr1_3:72416734-72416753 | None:intergenic | 45.0% | |
| !!! | ACCGCTGACGCTTTTAAGAT+CGG | + | chr1_3:72416901-72416920 | Msa0139120:intron | 45.0% |
| !! | ACCGATCTTAAAAGCGTCAG+CGG | - | chr1_3:72416905-72416924 | None:intergenic | 45.0% |
| !! | TGCCACTCGGTATTTTTCAG+CGG | - | chr1_3:72416964-72416983 | None:intergenic | 45.0% |
| AGCGGCAATTAATTGCCACT+CGG | - | chr1_3:72416977-72416996 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCATTGAAGG+AGG | - | chr1_3:72416284-72416303 | None:intergenic | 45.0% |
| !! | CCACTGATGAGAAGCATTGA+AGG | - | chr1_3:72416287-72416306 | None:intergenic | 45.0% |
| CCTTCAATGCTTCTCATCAG+TGG | + | chr1_3:72416284-72416303 | Msa0139120:CDS | 45.0% | |
| ! | TGAAGCACTCCGCTAACAAA+TGG | - | chr1_3:72416329-72416348 | None:intergenic | 45.0% |
| TGTGGCACTCCTCTAACAAA+TGG | + | chr1_3:72416366-72416385 | Msa0139120:CDS | 45.0% | |
| ! | CTCAGTGAGCCATTTGTTAG+AGG | - | chr1_3:72416378-72416397 | None:intergenic | 45.0% |
| CTCTAACAAATGGCTCACTG+AGG | + | chr1_3:72416376-72416395 | Msa0139120:CDS | 45.0% | |
| ! | CGCAAGAGGAGAGACATTTT+GGG | + | chr1_3:72416424-72416443 | Msa0139120:CDS | 45.0% |
| GATTTGAGAATCAGCTGCCA+TGG | - | chr1_3:72416501-72416520 | None:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | + | chr1_3:72416539-72416558 | Msa0139120:CDS | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | chr1_3:72416553-72416572 | Msa0139120:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | chr1_3:72416563-72416582 | Msa0139120:CDS | 45.0% |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr1_3:72416733-72416752 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr1_3:72416734-72416753 | None:intergenic | 45.0% | |
| !!! | ACCGCTGACGCTTTTAAGAT+CGG | + | chr1_3:72416901-72416920 | Msa0139120:intron | 45.0% |
| !! | ACCGATCTTAAAAGCGTCAG+CGG | - | chr1_3:72416905-72416924 | None:intergenic | 45.0% |
| !! | TGCCACTCGGTATTTTTCAG+CGG | - | chr1_3:72416964-72416983 | None:intergenic | 45.0% |
| AGCGGCAATTAATTGCCACT+CGG | - | chr1_3:72416977-72416996 | None:intergenic | 45.0% | |
| ATCCATGTCGTCTGAACGTG+TGG | + | chr1_3:72416348-72416367 | Msa0139120:CDS | 50.0% | |
| CAAATGGCTCACTGAGGACA+AGG | + | chr1_3:72416382-72416401 | Msa0139120:CDS | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | + | chr1_3:72416410-72416429 | Msa0139120:CDS | 50.0% |
| ! | GCGCAAGAGGAGAGACATTT+TGG | + | chr1_3:72416423-72416442 | Msa0139120:CDS | 50.0% |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | + | chr1_3:72416566-72416585 | Msa0139120:CDS | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | + | chr1_3:72416569-72416588 | Msa0139120:CDS | 50.0% |
| TGCCGCTGAAAAATACCGAG+TGG | + | chr1_3:72416959-72416978 | Msa0139120:intron | 50.0% | |
| ATCCATGTCGTCTGAACGTG+TGG | + | chr1_3:72416348-72416367 | Msa0139120:CDS | 50.0% | |
| CAAATGGCTCACTGAGGACA+AGG | + | chr1_3:72416382-72416401 | Msa0139120:CDS | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | + | chr1_3:72416410-72416429 | Msa0139120:CDS | 50.0% |
| ! | GCGCAAGAGGAGAGACATTT+TGG | + | chr1_3:72416423-72416442 | Msa0139120:CDS | 50.0% |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | + | chr1_3:72416566-72416585 | Msa0139120:CDS | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | + | chr1_3:72416569-72416588 | Msa0139120:CDS | 50.0% |
| TGCCGCTGAAAAATACCGAG+TGG | + | chr1_3:72416959-72416978 | Msa0139120:intron | 50.0% | |
| TGCCACACGTTCAGACGACA+TGG | - | chr1_3:72416353-72416372 | None:intergenic | 55.0% | |
| GTTGATGTTGGAGGTGGCAC+AGG | + | chr1_3:72416575-72416594 | Msa0139120:CDS | 55.0% | |
| TGCCACACGTTCAGACGACA+TGG | - | chr1_3:72416353-72416372 | None:intergenic | 55.0% | |
| GTTGATGTTGGAGGTGGCAC+AGG | + | chr1_3:72416575-72416594 | Msa0139120:CDS | 55.0% | |
| GATGTTGGAGGTGGCACAGG+AGG | + | chr1_3:72416578-72416597 | Msa0139120:CDS | 60.0% | |
| GATGTTGGAGGTGGCACAGG+AGG | + | chr1_3:72416578-72416597 | Msa0139120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72416236 | 72417500 | 72416236 | ID=Msa0139120;Name=Msa0139120 |
| chr1_3 | mRNA | 72416236 | 72417500 | 72416236 | ID=Msa0139120-mRNA-1;Parent=Msa0139120;Name=Msa0139120-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|2|0|274 |
| chr1_3 | exon | 72416236 | 72416757 | 72416236 | ID=Msa0139120-mRNA-1:exon:25283;Parent=Msa0139120-mRNA-1 |
| chr1_3 | exon | 72417198 | 72417500 | 72417198 | ID=Msa0139120-mRNA-1:exon:25284;Parent=Msa0139120-mRNA-1 |
| chr1_3 | CDS | 72416236 | 72416757 | 72416236 | ID=Msa0139120-mRNA-1:cds;Parent=Msa0139120-mRNA-1 |
| chr1_3 | CDS | 72417198 | 72417500 | 72417198 | ID=Msa0139120-mRNA-1:cds;Parent=Msa0139120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
