Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595320 | AFK39217.1 | 83.240 | 358 | 14 | 2 | 1 | 317 | 1 | 353 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595320 | sp|O24305|M3OM1_PEA | 68.156 | 358 | 71 | 2 | 1 | 317 | 1 | 356 | 8.54e-173 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0595320 | Msa0595350 | 0.812163 | 4.868002e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595320 | MtrunA17_Chr4g0014661 | 83.520 | 358 | 13 | 2 | 1 | 317 | 1 | 353 | 0.0 | 539 |
| Msa0595320 | MtrunA17_Chr4g0014591 | 84.078 | 358 | 11 | 2 | 1 | 317 | 1 | 353 | 0.0 | 526 |
| Msa0595320 | MtrunA17_Chr4g0014681 | 69.081 | 359 | 69 | 2 | 1 | 317 | 1 | 359 | 1.11e-170 | 478 |
| Msa0595320 | MtrunA17_Chr4g0046361 | 67.598 | 358 | 74 | 2 | 1 | 317 | 1 | 357 | 2.10e-170 | 477 |
| Msa0595320 | MtrunA17_Chr4g0014561 | 68.802 | 359 | 70 | 2 | 1 | 317 | 1 | 359 | 1.50e-169 | 475 |
| Msa0595320 | MtrunA17_Chr4g0014641 | 67.688 | 359 | 74 | 2 | 1 | 317 | 1 | 359 | 1.24e-166 | 468 |
| Msa0595320 | MtrunA17_Chr4g0046341 | 67.222 | 360 | 75 | 2 | 1 | 317 | 1 | 360 | 7.23e-163 | 458 |
| Msa0595320 | MtrunA17_Chr4g0014601 | 78.491 | 265 | 11 | 2 | 1 | 224 | 1 | 260 | 4.97e-142 | 402 |
| Msa0595320 | MtrunA17_Chr7g0219161 | 42.609 | 345 | 152 | 5 | 6 | 309 | 6 | 345 | 1.13e-90 | 275 |
| Msa0595320 | MtrunA17_Chr7g0219141 | 41.926 | 353 | 159 | 5 | 6 | 317 | 6 | 353 | 2.10e-90 | 274 |
| Msa0595320 | MtrunA17_Chr7g0223231 | 40.793 | 353 | 157 | 5 | 6 | 317 | 5 | 346 | 7.16e-90 | 272 |
| Msa0595320 | MtrunA17_Chr1g0188391 | 42.308 | 364 | 160 | 7 | 1 | 319 | 1 | 359 | 1.42e-88 | 269 |
| Msa0595320 | MtrunA17_Chr5g0432251 | 42.000 | 350 | 155 | 6 | 11 | 317 | 11 | 355 | 4.88e-87 | 265 |
| Msa0595320 | MtrunA17_Chr5g0432301 | 40.443 | 361 | 164 | 7 | 3 | 317 | 1 | 356 | 3.81e-85 | 260 |
| Msa0595320 | MtrunA17_Chr7g0223241 | 40.169 | 356 | 161 | 5 | 6 | 320 | 5 | 349 | 1.39e-84 | 258 |
| Msa0595320 | MtrunA17_Chr5g0432241 | 40.056 | 357 | 166 | 6 | 4 | 317 | 5 | 356 | 7.20e-82 | 252 |
| Msa0595320 | MtrunA17_Chr4g0046531 | 41.620 | 358 | 160 | 5 | 1 | 316 | 1 | 351 | 7.68e-82 | 262 |
| Msa0595320 | MtrunA17_Chr4g0046531 | 40.390 | 359 | 165 | 5 | 1 | 317 | 363 | 714 | 4.08e-77 | 249 |
| Msa0595320 | MtrunA17_Chr5g0432261 | 41.875 | 320 | 170 | 5 | 11 | 317 | 7 | 323 | 5.20e-79 | 243 |
| Msa0595320 | MtrunA17_Chr5g0432211 | 38.286 | 350 | 154 | 7 | 11 | 317 | 11 | 341 | 3.98e-74 | 232 |
| Msa0595320 | MtrunA17_Chr4g0040621 | 38.395 | 349 | 166 | 4 | 11 | 317 | 24 | 365 | 1.51e-73 | 231 |
| Msa0595320 | MtrunA17_Chr1g0188371 | 40.059 | 337 | 153 | 6 | 9 | 301 | 9 | 340 | 5.72e-71 | 224 |
| Msa0595320 | MtrunA17_Chr4g0014671 | 96.078 | 102 | 4 | 0 | 216 | 317 | 29 | 130 | 1.67e-63 | 197 |
| Msa0595320 | MtrunA17_Chr7g0219171 | 33.754 | 317 | 127 | 6 | 6 | 317 | 6 | 244 | 1.48e-51 | 171 |
| Msa0595320 | MtrunA17_Chr3g0121301 | 32.853 | 347 | 176 | 11 | 20 | 321 | 27 | 361 | 6.25e-43 | 151 |
| Msa0595320 | MtrunA17_Chr4g0014611 | 95.833 | 96 | 4 | 0 | 222 | 317 | 8 | 103 | 6.78e-42 | 140 |
| Msa0595320 | MtrunA17_Chr4g0022021 | 29.558 | 362 | 201 | 10 | 3 | 319 | 14 | 366 | 1.88e-37 | 137 |
| Msa0595320 | MtrunA17_Chr4g0021981 | 29.477 | 363 | 200 | 11 | 3 | 319 | 14 | 366 | 1.45e-36 | 134 |
| Msa0595320 | MtrunA17_Chr8g0367501 | 26.389 | 360 | 209 | 10 | 5 | 316 | 6 | 357 | 2.40e-26 | 107 |
| Msa0595320 | MtrunA17_Chr1g0200491 | 25.926 | 351 | 202 | 8 | 5 | 307 | 17 | 357 | 2.91e-26 | 107 |
| Msa0595320 | MtrunA17_Chr4g0014621 | 96.774 | 62 | 2 | 0 | 256 | 317 | 197 | 258 | 6.82e-26 | 103 |
| Msa0595320 | MtrunA17_Chr8g0367441 | 27.077 | 325 | 182 | 9 | 26 | 302 | 41 | 358 | 2.41e-25 | 104 |
| Msa0595320 | MtrunA17_Chr3g0128011 | 28.249 | 354 | 178 | 12 | 9 | 307 | 71 | 403 | 9.67e-25 | 103 |
| Msa0595320 | MtrunA17_Chr7g0276401 | 26.706 | 337 | 191 | 11 | 26 | 316 | 42 | 368 | 2.13e-24 | 102 |
| Msa0595320 | MtrunA17_Chr5g0448091 | 28.024 | 339 | 183 | 14 | 29 | 317 | 31 | 358 | 4.53e-24 | 100 |
| Msa0595320 | MtrunA17_Chr8g0367451 | 26.462 | 325 | 184 | 9 | 26 | 302 | 40 | 357 | 6.74e-24 | 100 |
| Msa0595320 | MtrunA17_Chr7g0276411 | 26.970 | 330 | 184 | 10 | 26 | 306 | 26 | 347 | 8.41e-24 | 100 |
| Msa0595320 | MtrunA17_Chr8g0367491 | 25.519 | 337 | 195 | 10 | 26 | 313 | 40 | 369 | 2.51e-23 | 99.0 |
| Msa0595320 | MtrunA17_Chr1g0163611 | 25.000 | 332 | 195 | 7 | 25 | 308 | 30 | 355 | 1.25e-21 | 94.0 |
| Msa0595320 | MtrunA17_Chr7g0218271 | 24.695 | 328 | 190 | 7 | 32 | 308 | 40 | 361 | 1.55e-21 | 94.0 |
| Msa0595320 | MtrunA17_Chr7g0218301 | 25.000 | 328 | 189 | 7 | 32 | 308 | 40 | 361 | 1.79e-21 | 93.6 |
| Msa0595320 | MtrunA17_Chr7g0218261 | 24.224 | 322 | 193 | 7 | 32 | 308 | 39 | 354 | 2.70e-21 | 93.2 |
| Msa0595320 | MtrunA17_Chr3g0085211 | 27.744 | 328 | 181 | 10 | 28 | 308 | 38 | 356 | 5.79e-21 | 92.0 |
| Msa0595320 | MtrunA17_Chr2g0314271 | 28.440 | 327 | 169 | 10 | 31 | 306 | 27 | 339 | 7.72e-21 | 91.7 |
| Msa0595320 | MtrunA17_Chr7g0218131 | 24.695 | 328 | 194 | 8 | 32 | 313 | 40 | 360 | 1.49e-20 | 90.9 |
| Msa0595320 | MtrunA17_Chr1g0163601 | 24.398 | 332 | 197 | 7 | 25 | 308 | 30 | 355 | 1.73e-20 | 90.9 |
| Msa0595320 | MtrunA17_Chr1g0163621 | 24.478 | 335 | 193 | 9 | 25 | 308 | 44 | 369 | 2.29e-20 | 90.5 |
| Msa0595320 | MtrunA17_Chr8g0367381 | 26.129 | 310 | 157 | 9 | 26 | 288 | 41 | 325 | 1.28e-19 | 87.8 |
| Msa0595320 | MtrunA17_Chr8g0345851 | 38.211 | 123 | 69 | 3 | 190 | 308 | 158 | 277 | 4.00e-19 | 85.9 |
| Msa0595320 | MtrunA17_Chr2g0307521 | 24.458 | 323 | 187 | 8 | 32 | 306 | 34 | 347 | 1.75e-18 | 85.1 |
| Msa0595320 | MtrunA17_Chr7g0218181 | 23.030 | 330 | 194 | 10 | 32 | 313 | 40 | 357 | 2.46e-18 | 84.7 |
| Msa0595320 | MtrunA17_Chr3g0085201 | 26.647 | 334 | 184 | 12 | 32 | 316 | 29 | 350 | 7.60e-18 | 83.2 |
| Msa0595320 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 208 | 313 | 1 | 105 | 2.29e-17 | 76.6 |
| Msa0595320 | MtrunA17_Chr3g0130011 | 24.625 | 333 | 189 | 11 | 23 | 306 | 24 | 343 | 3.69e-14 | 72.4 |
| Msa0595320 | MtrunA17_Chr4g0011691 | 38.614 | 101 | 53 | 3 | 6 | 106 | 16 | 107 | 9.51e-14 | 69.7 |
| Msa0595320 | MtrunA17_Chr4g0011691 | 39.000 | 100 | 57 | 3 | 223 | 321 | 140 | 236 | 3.72e-12 | 65.1 |
| Msa0595320 | MtrunA17_Chr3g0130061 | 23.724 | 333 | 192 | 11 | 23 | 306 | 24 | 343 | 3.89e-12 | 66.2 |
| Msa0595320 | MtrunA17_Chr8g0367391 | 37.931 | 87 | 50 | 2 | 221 | 306 | 36 | 119 | 8.96e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595320 | AT4G35160.1 | 29.722 | 360 | 184 | 12 | 16 | 317 | 29 | 377 | 8.08e-34 | 128 |
| Msa0595320 | AT4G35150.1 | 30.514 | 331 | 176 | 14 | 16 | 317 | 15 | 320 | 2.20e-33 | 125 |
| Msa0595320 | AT5G54160.1 | 28.612 | 353 | 192 | 9 | 8 | 308 | 4 | 348 | 3.91e-27 | 109 |
| Msa0595320 | AT1G33030.1 | 26.888 | 331 | 183 | 10 | 31 | 311 | 21 | 342 | 1.45e-25 | 105 |
| Msa0595320 | AT5G53810.1 | 28.358 | 335 | 178 | 10 | 29 | 308 | 38 | 365 | 1.24e-23 | 100 |
| Msa0595320 | AT1G77520.1 | 27.463 | 335 | 180 | 11 | 31 | 311 | 44 | 369 | 1.67e-22 | 97.1 |
| Msa0595320 | AT1G51990.2 | 28.173 | 323 | 178 | 9 | 33 | 307 | 32 | 348 | 5.92e-22 | 95.5 |
| Msa0595320 | AT3G53140.1 | 28.614 | 332 | 167 | 11 | 31 | 306 | 27 | 344 | 4.79e-21 | 92.8 |
| Msa0595320 | AT1G51990.1 | 28.173 | 323 | 178 | 9 | 33 | 307 | 32 | 348 | 6.01e-21 | 92.4 |
| Msa0595320 | AT1G77530.1 | 27.914 | 326 | 174 | 10 | 31 | 302 | 44 | 362 | 8.18e-20 | 89.4 |
| Msa0595320 | AT1G76790.1 | 25.543 | 368 | 188 | 13 | 7 | 313 | 9 | 351 | 1.06e-19 | 89.0 |
| Msa0595320 | AT1G63140.2 | 25.833 | 360 | 201 | 13 | 9 | 311 | 19 | 369 | 1.20e-19 | 89.0 |
| Msa0595320 | AT1G63140.4 | 25.833 | 360 | 201 | 13 | 9 | 311 | 39 | 389 | 1.34e-19 | 89.0 |
| Msa0595320 | AT1G21110.1 | 24.773 | 331 | 176 | 11 | 31 | 303 | 40 | 355 | 8.00e-17 | 80.9 |
| Msa0595320 | AT1G21130.1 | 24.551 | 334 | 183 | 10 | 31 | 308 | 40 | 360 | 3.72e-16 | 79.0 |
| Msa0595320 | AT1G62900.1 | 38.182 | 110 | 61 | 4 | 204 | 311 | 89 | 193 | 1.14e-15 | 75.1 |
| Msa0595320 | AT1G21100.1 | 24.478 | 335 | 182 | 11 | 31 | 308 | 40 | 360 | 1.72e-15 | 77.0 |
| Msa0595320 | AT1G21120.1 | 23.810 | 336 | 183 | 11 | 31 | 308 | 40 | 360 | 4.08e-14 | 72.8 |
| Msa0595320 | AT1G21120.2 | 23.810 | 336 | 183 | 11 | 31 | 308 | 88 | 408 | 4.21e-14 | 73.2 |
Find 61 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACATGTTTGTATAAA+TGG | 0.137435 | 4_2:-24386367 | None:intergenic |
| GCTGTTCTTCAATATCTTTA+AGG | 0.203276 | 4_2:-24388083 | None:intergenic |
| TATAGGACATTAACTTTAGA+AGG | 0.248539 | 4_2:-24386506 | None:intergenic |
| TTCAAAGATGAGGCTAATTC+AGG | 0.265492 | 4_2:-24386476 | None:intergenic |
| CAGCCATGTGTTTGAGGGTT+TGG | 0.297695 | 4_2:+24386886 | Msa0595320:CDS |
| GTTTGAGGGTTTGGAATCTT+TGG | 0.299287 | 4_2:+24386895 | Msa0595320:CDS |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_2:-24386717 | None:intergenic |
| AACAGCAAAGAAGCTATTTC+AGG | 0.318216 | 4_2:+24388100 | Msa0595320:CDS |
| AATGTTTAAGCTTGCTCTTA+AGG | 0.321006 | 4_2:+24386859 | Msa0595320:CDS |
| TCAAGTGGGTTCTGCATGAT+TGG | 0.323139 | 4_2:+24388047 | Msa0595320:intron |
| CTAAAGTTAATGTCCTATAT+AGG | 0.375731 | 4_2:+24386510 | Msa0595320:CDS |
| AAAGAAGCTATTTCAGGAAA+AGG | 0.388596 | 4_2:+24388106 | Msa0595320:CDS |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4_2:-24386626 | None:intergenic |
| AAGAAAGAGAAAAGAAAGAA+TGG | 0.396191 | 4_2:+24388245 | Msa0595320:CDS |
| TTGAGTAAAATAGCATTTGC+AGG | 0.398299 | 4_2:-24387488 | None:intergenic |
| AATTCTTCATCCATGTTCTC+TGG | 0.398747 | 4_2:+24386682 | Msa0595320:CDS |
| TCATAGGCTTTCCATGTTTG+TGG | 0.399025 | 4_2:-24386448 | None:intergenic |
| GAGAGACTTGAAGCCGCATA+TGG | 0.400326 | 4_2:-24388314 | None:intergenic |
| CAAGTGGGTTCTGCATGATT+GGG | 0.411383 | 4_2:+24388048 | Msa0595320:intron |
| GCACTCTATGAAAGTGCAAT+GGG | 0.425564 | 4_2:+24386752 | Msa0595320:CDS |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_2:+24388220 | Msa0595320:CDS |
| GCTAATTCAGGAACAGTCAT+AGG | 0.442962 | 4_2:-24386464 | None:intergenic |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_2:+24386708 | Msa0595320:CDS |
| GACAAACTTAGCTTGTTTCA+AGG | 0.452747 | 4_2:+24386815 | Msa0595320:CDS |
| GACTGCAGCCATGTGTTTGA+GGG | 0.461485 | 4_2:+24386881 | Msa0595320:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_2:-24386523 | None:intergenic |
| CATTTGTGAATCAGCTATCA+TGG | 0.465834 | 4_2:-24386840 | None:intergenic |
| CTTAAATCAGCTGTGGAACT+AGG | 0.466691 | 4_2:+24386410 | Msa0595320:CDS |
| GGACTGCAGCCATGTGTTTG+AGG | 0.479176 | 4_2:+24386880 | Msa0595320:CDS |
| CATTTGCAGGAGGAATAGAT+TGG | 0.481197 | 4_2:-24387475 | None:intergenic |
| AAGAAGCTATTTCAGGAAAA+GGG | 0.484470 | 4_2:+24388107 | Msa0595320:CDS |
| CACAGCTGATTTAAGTGCCA+TGG | 0.493095 | 4_2:-24386402 | None:intergenic |
| GAATCTTTGGTTGATGTGGC+AGG | 0.499173 | 4_2:+24386908 | Msa0595320:CDS |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_2:+24386690 | Msa0595320:CDS |
| ACAAACTTAGCTTGTTTCAA+GGG | 0.501629 | 4_2:+24386816 | Msa0595320:CDS |
| ATAACAGTGAAAGGCAAAGA+AGG | 0.521667 | 4_2:+24386572 | Msa0595320:CDS |
| TGCACTCTATGAAAGTGCAA+TGG | 0.533425 | 4_2:+24386751 | Msa0595320:CDS |
| TTCGCGAAAATAACAGTGAA+AGG | 0.538851 | 4_2:+24386563 | Msa0595320:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_2:+24386724 | Msa0595320:CDS |
| TTTGGAATCTTTGGTTGATG+TGG | 0.555368 | 4_2:+24386904 | Msa0595320:CDS |
| CAAATGGATTTCAAGAGCAA+TGG | 0.555834 | 4_2:+24386311 | None:intergenic |
| AGAGACTTGAAGCCGCATAT+GGG | 0.571433 | 4_2:-24388313 | None:intergenic |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_2:+24388198 | Msa0595320:CDS |
| ATAGGACATTAACTTTAGAA+GGG | 0.580560 | 4_2:-24386505 | None:intergenic |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4_2:+24386626 | Msa0595320:CDS |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_2:-24386692 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_2:-24388194 | None:intergenic |
| CAAACTTAGCTTGTTTCAAG+GGG | 0.606778 | 4_2:+24386817 | Msa0595320:CDS |
| AGGGTGAAGTTTCAAAGATG+AGG | 0.607728 | 4_2:-24386486 | None:intergenic |
| TACAAGATTACTCCCATATG+CGG | 0.624719 | 4_2:+24388301 | Msa0595320:CDS |
| TTAGATGCAATCCACAAACA+TGG | 0.629343 | 4_2:+24386437 | Msa0595320:CDS |
| CATGGCACTTAAATCAGCTG+TGG | 0.634572 | 4_2:+24386403 | Msa0595320:CDS |
| CACTCTATGAAAGTGCAATG+GGG | 0.635539 | 4_2:+24386753 | Msa0595320:CDS |
| ATTCCAAACCCTCAAACACA+TGG | 0.643702 | 4_2:-24386889 | None:intergenic |
| ACTCTATGAAAGTGCAATGG+GGG | 0.643797 | 4_2:+24386754 | Msa0595320:CDS |
| TTGCGCTTGCTAACACACGA+TGG | 0.651331 | 4_2:+24386536 | Msa0595320:CDS |
| TGAAGAATTCCCTTAACAAG+TGG | 0.661082 | 4_2:-24386668 | None:intergenic |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_2:+24388268 | Msa0595320:CDS |
| AGTAAAATAGCATTTGCAGG+AGG | 0.664262 | 4_2:-24387485 | None:intergenic |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_2:+24386718 | Msa0595320:CDS |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4_2:-24386623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACATCTTTATTTTATTAT+GGG | - | chr4_2:24387050-24387069 | None:intergenic | 10.0% |
| !!! | AATACATCTTTATTTTATTA+TGG | - | chr4_2:24387051-24387070 | None:intergenic | 10.0% |
| !!! | ATACATCTTTATTTTATTAT+GGG | - | chr4_2:24387050-24387069 | None:intergenic | 10.0% |
| !!! | AATACATCTTTATTTTATTA+TGG | - | chr4_2:24387051-24387070 | None:intergenic | 10.0% |
| !!! | CAATTTTAAATATTAAGTCA+TGG | - | chr4_2:24387775-24387794 | None:intergenic | 15.0% |
| !!! | CAATTTTAAATATTAAGTCA+TGG | - | chr4_2:24387775-24387794 | None:intergenic | 15.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_2:24386370-24386389 | None:intergenic | 20.0% |
| !!! | AGAAAGAGTTTTTTTTTTAG+TGG | + | chr4_2:24387286-24387305 | Msa0595320:intron | 20.0% |
| !!! | GAAAGAGTTTTTTTTTTAGT+GGG | + | chr4_2:24387287-24387306 | Msa0595320:intron | 20.0% |
| !!! | AAAGAGTTTTTTTTTTAGTG+GGG | + | chr4_2:24387288-24387307 | Msa0595320:intron | 20.0% |
| !!! | GGGCTATAAAATTTTTTTTT+AGG | + | chr4_2:24387317-24387336 | Msa0595320:intron | 20.0% |
| !! | ATCCAAAAAAAATTACTTGT+AGG | + | chr4_2:24387582-24387601 | Msa0595320:intron | 20.0% |
| !! | TCCAAAAAAAATTACTTGTA+GGG | + | chr4_2:24387583-24387602 | Msa0595320:intron | 20.0% |
| !! | TACAGATTTATATCTTGATT+AGG | - | chr4_2:24387892-24387911 | None:intergenic | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_2:24386370-24386389 | None:intergenic | 20.0% |
| !!! | AGAAAGAGTTTTTTTTTTAG+TGG | + | chr4_2:24387286-24387305 | Msa0595320:intron | 20.0% |
| !!! | GAAAGAGTTTTTTTTTTAGT+GGG | + | chr4_2:24387287-24387306 | Msa0595320:intron | 20.0% |
| !!! | AAAGAGTTTTTTTTTTAGTG+GGG | + | chr4_2:24387288-24387307 | Msa0595320:intron | 20.0% |
| !!! | GGGCTATAAAATTTTTTTTT+AGG | + | chr4_2:24387317-24387336 | Msa0595320:intron | 20.0% |
| !! | ATCCAAAAAAAATTACTTGT+AGG | + | chr4_2:24387582-24387601 | Msa0595320:intron | 20.0% |
| !! | TCCAAAAAAAATTACTTGTA+GGG | + | chr4_2:24387583-24387602 | Msa0595320:intron | 20.0% |
| !! | TACAGATTTATATCTTGATT+AGG | - | chr4_2:24387892-24387911 | None:intergenic | 20.0% |
| !!! | ATACAGTTTTATAAGTTCCA+TGG | + | chr4_2:24386385-24386404 | Msa0595320:CDS | 25.0% |
| !! | ATAGGACATTAACTTTAGAA+GGG | - | chr4_2:24386508-24386527 | None:intergenic | 25.0% |
| ! | TATAGGACATTAACTTTAGA+AGG | - | chr4_2:24386509-24386528 | None:intergenic | 25.0% |
| ! | CTAAAGTTAATGTCCTATAT+AGG | + | chr4_2:24386510-24386529 | Msa0595320:CDS | 25.0% |
| !!! | AAGAGTTTTTTTTTTAGTGG+GGG | + | chr4_2:24387289-24387308 | Msa0595320:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | + | chr4_2:24387440-24387459 | Msa0595320:intron | 25.0% |
| ! | TATGAAATCATGAACATACA+TGG | - | chr4_2:24387545-24387564 | None:intergenic | 25.0% |
| ! | CCAAAAAAAATTACTTGTAG+GGG | + | chr4_2:24387584-24387603 | Msa0595320:intron | 25.0% |
| !!! | AATCTCAAATGTTTTTCAAG+TGG | + | chr4_2:24388032-24388051 | Msa0595320:intron | 25.0% |
| !!! | ATCTCAAATGTTTTTCAAGT+GGG | + | chr4_2:24388033-24388052 | Msa0595320:intron | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | + | chr4_2:24388245-24388264 | Msa0595320:CDS | 25.0% |
| !!! | ATACAGTTTTATAAGTTCCA+TGG | + | chr4_2:24386385-24386404 | Msa0595320:CDS | 25.0% |
| !! | ATAGGACATTAACTTTAGAA+GGG | - | chr4_2:24386508-24386527 | None:intergenic | 25.0% |
| ! | TATAGGACATTAACTTTAGA+AGG | - | chr4_2:24386509-24386528 | None:intergenic | 25.0% |
| ! | CTAAAGTTAATGTCCTATAT+AGG | + | chr4_2:24386510-24386529 | Msa0595320:CDS | 25.0% |
| !!! | AAGAGTTTTTTTTTTAGTGG+GGG | + | chr4_2:24387289-24387308 | Msa0595320:intron | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | + | chr4_2:24387440-24387459 | Msa0595320:intron | 25.0% |
| ! | TATGAAATCATGAACATACA+TGG | - | chr4_2:24387545-24387564 | None:intergenic | 25.0% |
| ! | CCAAAAAAAATTACTTGTAG+GGG | + | chr4_2:24387584-24387603 | Msa0595320:intron | 25.0% |
| !!! | AATCTCAAATGTTTTTCAAG+TGG | + | chr4_2:24388032-24388051 | Msa0595320:intron | 25.0% |
| !!! | ATCTCAAATGTTTTTCAAGT+GGG | + | chr4_2:24388033-24388052 | Msa0595320:intron | 25.0% |
| ! | AAGAAAGAGAAAAGAAAGAA+TGG | + | chr4_2:24388245-24388264 | Msa0595320:CDS | 25.0% |
| !! | ACAAACTTAGCTTGTTTCAA+GGG | + | chr4_2:24386816-24386835 | Msa0595320:CDS | 30.0% |
| ! | AATGTTTAAGCTTGCTCTTA+AGG | + | chr4_2:24386859-24386878 | Msa0595320:CDS | 30.0% |
| !!! | AGAGTTTTTTTTTTAGTGGG+GGG | + | chr4_2:24387290-24387309 | Msa0595320:intron | 30.0% |
| CAAAATTTGAACTTTGTTGG+AGG | + | chr4_2:24387443-24387462 | Msa0595320:intron | 30.0% | |
| TTGAGTAAAATAGCATTTGC+AGG | - | chr4_2:24387491-24387510 | None:intergenic | 30.0% | |
| !!! | TGCAAATGCTATTTTACTCA+AGG | + | chr4_2:24387490-24387509 | Msa0595320:CDS | 30.0% |
| TTCATAACCAAGATTAGTGA+CGG | + | chr4_2:24387559-24387578 | Msa0595320:intron | 30.0% | |
| !!! | CCCCTACAAGTAATTTTTTT+TGG | - | chr4_2:24387587-24387606 | None:intergenic | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_2:24388086-24388105 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_2:24388106-24388125 | Msa0595320:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_2:24388107-24388126 | Msa0595320:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_2:24388115-24388134 | Msa0595320:CDS | 30.0% | |
| !! | ACAAACTTAGCTTGTTTCAA+GGG | + | chr4_2:24386816-24386835 | Msa0595320:CDS | 30.0% |
| ! | AATGTTTAAGCTTGCTCTTA+AGG | + | chr4_2:24386859-24386878 | Msa0595320:CDS | 30.0% |
| !!! | AGAGTTTTTTTTTTAGTGGG+GGG | + | chr4_2:24387290-24387309 | Msa0595320:intron | 30.0% |
| CAAAATTTGAACTTTGTTGG+AGG | + | chr4_2:24387443-24387462 | Msa0595320:intron | 30.0% | |
| TTGAGTAAAATAGCATTTGC+AGG | - | chr4_2:24387491-24387510 | None:intergenic | 30.0% | |
| !!! | TGCAAATGCTATTTTACTCA+AGG | + | chr4_2:24387490-24387509 | Msa0595320:CDS | 30.0% |
| TTCATAACCAAGATTAGTGA+CGG | + | chr4_2:24387559-24387578 | Msa0595320:intron | 30.0% | |
| !!! | CCCCTACAAGTAATTTTTTT+TGG | - | chr4_2:24387587-24387606 | None:intergenic | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_2:24388086-24388105 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_2:24388106-24388125 | Msa0595320:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_2:24388107-24388126 | Msa0595320:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_2:24388115-24388134 | Msa0595320:CDS | 30.0% | |
| TTAGATGCAATCCACAAACA+TGG | + | chr4_2:24386437-24386456 | Msa0595320:CDS | 35.0% | |
| TTCAAAGATGAGGCTAATTC+AGG | - | chr4_2:24386479-24386498 | None:intergenic | 35.0% | |
| TTCGCGAAAATAACAGTGAA+AGG | + | chr4_2:24386563-24386582 | Msa0595320:CDS | 35.0% | |
| ATAACAGTGAAAGGCAAAGA+AGG | + | chr4_2:24386572-24386591 | Msa0595320:CDS | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_2:24386658-24386677 | Msa0595320:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_2:24386659-24386678 | Msa0595320:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_2:24386671-24386690 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_2:24386682-24386701 | Msa0595320:CDS | 35.0% | |
| !! | GACAAACTTAGCTTGTTTCA+AGG | + | chr4_2:24386815-24386834 | Msa0595320:CDS | 35.0% |
| !! | CAAACTTAGCTTGTTTCAAG+GGG | + | chr4_2:24386817-24386836 | Msa0595320:CDS | 35.0% |
| CATTTGTGAATCAGCTATCA+TGG | - | chr4_2:24386843-24386862 | None:intergenic | 35.0% | |
| ! | TTTGGAATCTTTGGTTGATG+TGG | + | chr4_2:24386904-24386923 | Msa0595320:CDS | 35.0% |
| AAAACTGTGCATTTGATGTG+AGG | - | chr4_2:24386974-24386993 | None:intergenic | 35.0% | |
| !!! | TCAAATGCACAGTTTTAGAC+AGG | + | chr4_2:24386978-24386997 | Msa0595320:intron | 35.0% |
| !!! | CAAATGCACAGTTTTAGACA+GGG | + | chr4_2:24386979-24386998 | Msa0595320:intron | 35.0% |
| !!! | TGTCAGTGTTGTTTTGGAAA+GGG | + | chr4_2:24387087-24387106 | Msa0595320:intron | 35.0% |
| !! | TCGTTTTTCTTCTTCCTTCA+TGG | - | chr4_2:24387221-24387240 | None:intergenic | 35.0% |
| GAAGAAAAACGAAACACTGA+TGG | + | chr4_2:24387229-24387248 | Msa0595320:intron | 35.0% | |
| ! | TTGTGGTAGATCTAAAACCA+GGG | - | chr4_2:24387399-24387418 | None:intergenic | 35.0% |
| TTTAGATCTACCACAAGTTG+TGG | + | chr4_2:24387403-24387422 | Msa0595320:intron | 35.0% | |
| AGTAAAATAGCATTTGCAGG+AGG | - | chr4_2:24387488-24387507 | None:intergenic | 35.0% | |
| CATGAACATACATGGACAAA+AGG | - | chr4_2:24387537-24387556 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_2:24388100-24388119 | Msa0595320:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_2:24388220-24388239 | Msa0595320:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_2:24388268-24388287 | Msa0595320:CDS | 35.0% | |
| TACAAGATTACTCCCATATG+CGG | + | chr4_2:24388301-24388320 | Msa0595320:CDS | 35.0% | |
| TTAGATGCAATCCACAAACA+TGG | + | chr4_2:24386437-24386456 | Msa0595320:CDS | 35.0% | |
| TTCAAAGATGAGGCTAATTC+AGG | - | chr4_2:24386479-24386498 | None:intergenic | 35.0% | |
| TTCGCGAAAATAACAGTGAA+AGG | + | chr4_2:24386563-24386582 | Msa0595320:CDS | 35.0% | |
| ATAACAGTGAAAGGCAAAGA+AGG | + | chr4_2:24386572-24386591 | Msa0595320:CDS | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_2:24386658-24386677 | Msa0595320:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_2:24386659-24386678 | Msa0595320:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_2:24386671-24386690 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_2:24386682-24386701 | Msa0595320:CDS | 35.0% | |
| !! | GACAAACTTAGCTTGTTTCA+AGG | + | chr4_2:24386815-24386834 | Msa0595320:CDS | 35.0% |
| !! | CAAACTTAGCTTGTTTCAAG+GGG | + | chr4_2:24386817-24386836 | Msa0595320:CDS | 35.0% |
| CATTTGTGAATCAGCTATCA+TGG | - | chr4_2:24386843-24386862 | None:intergenic | 35.0% | |
| ! | TTTGGAATCTTTGGTTGATG+TGG | + | chr4_2:24386904-24386923 | Msa0595320:CDS | 35.0% |
| AAAACTGTGCATTTGATGTG+AGG | - | chr4_2:24386974-24386993 | None:intergenic | 35.0% | |
| !!! | TCAAATGCACAGTTTTAGAC+AGG | + | chr4_2:24386978-24386997 | Msa0595320:intron | 35.0% |
| !!! | CAAATGCACAGTTTTAGACA+GGG | + | chr4_2:24386979-24386998 | Msa0595320:intron | 35.0% |
| !!! | TGTCAGTGTTGTTTTGGAAA+GGG | + | chr4_2:24387087-24387106 | Msa0595320:intron | 35.0% |
| !! | TCGTTTTTCTTCTTCCTTCA+TGG | - | chr4_2:24387221-24387240 | None:intergenic | 35.0% |
| GAAGAAAAACGAAACACTGA+TGG | + | chr4_2:24387229-24387248 | Msa0595320:intron | 35.0% | |
| ! | TTGTGGTAGATCTAAAACCA+GGG | - | chr4_2:24387399-24387418 | None:intergenic | 35.0% |
| TTTAGATCTACCACAAGTTG+TGG | + | chr4_2:24387403-24387422 | Msa0595320:intron | 35.0% | |
| AGTAAAATAGCATTTGCAGG+AGG | - | chr4_2:24387488-24387507 | None:intergenic | 35.0% | |
| CATGAACATACATGGACAAA+AGG | - | chr4_2:24387537-24387556 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_2:24388100-24388119 | Msa0595320:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_2:24388220-24388239 | Msa0595320:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_2:24388268-24388287 | Msa0595320:CDS | 35.0% | |
| TACAAGATTACTCCCATATG+CGG | + | chr4_2:24388301-24388320 | Msa0595320:CDS | 35.0% | |
| CTTAAATCAGCTGTGGAACT+AGG | + | chr4_2:24386410-24386429 | Msa0595320:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | - | chr4_2:24386451-24386470 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | - | chr4_2:24386467-24386486 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | - | chr4_2:24386489-24386508 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_2:24386690-24386709 | Msa0595320:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_2:24386720-24386739 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_2:24386718-24386737 | Msa0595320:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr4_2:24386751-24386770 | Msa0595320:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr4_2:24386752-24386771 | Msa0595320:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr4_2:24386753-24386772 | Msa0595320:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr4_2:24386754-24386773 | Msa0595320:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr4_2:24386892-24386911 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr4_2:24386895-24386914 | Msa0595320:CDS | 40.0% |
| !!! | GAACAGTGTCAGTGTTGTTT+TGG | + | chr4_2:24387081-24387100 | Msa0595320:intron | 40.0% |
| !!! | GTGTCAGTGTTGTTTTGGAA+AGG | + | chr4_2:24387086-24387105 | Msa0595320:intron | 40.0% |
| !!! | GTCAGTGTTGTTTTGGAAAG+GGG | + | chr4_2:24387088-24387107 | Msa0595320:intron | 40.0% |
| GGAAAGGGGAAAACATCAAT+TGG | + | chr4_2:24387102-24387121 | Msa0595320:intron | 40.0% | |
| AGGGGAAAACATCAATTGGA+TGG | + | chr4_2:24387106-24387125 | Msa0595320:intron | 40.0% | |
| GACCATACCATCATCATCAT+CGG | - | chr4_2:24387132-24387151 | None:intergenic | 40.0% | |
| GGTATGGTCAGAAATCGAAT+TGG | + | chr4_2:24387143-24387162 | Msa0595320:intron | 40.0% | |
| !!! | TTTTTTTTAGTGGGGGGTAC+TGG | + | chr4_2:24387296-24387315 | Msa0595320:intron | 40.0% |
| !!! | TTTTTTTAGTGGGGGGTACT+GGG | + | chr4_2:24387297-24387316 | Msa0595320:intron | 40.0% |
| !!! | TTTTTTTTAGGCCCATACCC+AGG | + | chr4_2:24387329-24387348 | Msa0595320:intron | 40.0% |
| !!! | TTTTTTTAGGCCCATACCCA+GGG | + | chr4_2:24387330-24387349 | Msa0595320:intron | 40.0% |
| ! | CTTGTGGTAGATCTAAAACC+AGG | - | chr4_2:24387400-24387419 | None:intergenic | 40.0% |
| GATAAGTTAGCCACAACTTG+TGG | - | chr4_2:24387416-24387435 | None:intergenic | 40.0% | |
| CATTTGCAGGAGGAATAGAT+TGG | - | chr4_2:24387478-24387497 | None:intergenic | 40.0% | |
| TTTGGATCCGTCACTAATCT+TGG | - | chr4_2:24387569-24387588 | None:intergenic | 40.0% | |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_2:24388197-24388216 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_2:24388198-24388217 | Msa0595320:CDS | 40.0% | |
| CTTAAATCAGCTGTGGAACT+AGG | + | chr4_2:24386410-24386429 | Msa0595320:CDS | 40.0% | |
| TCATAGGCTTTCCATGTTTG+TGG | - | chr4_2:24386451-24386470 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAT+AGG | - | chr4_2:24386467-24386486 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | - | chr4_2:24386489-24386508 | None:intergenic | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_2:24386690-24386709 | Msa0595320:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_2:24386720-24386739 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_2:24386718-24386737 | Msa0595320:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr4_2:24386751-24386770 | Msa0595320:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr4_2:24386752-24386771 | Msa0595320:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr4_2:24386753-24386772 | Msa0595320:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr4_2:24386754-24386773 | Msa0595320:CDS | 40.0% |
| ATTCCAAACCCTCAAACACA+TGG | - | chr4_2:24386892-24386911 | None:intergenic | 40.0% | |
| ! | GTTTGAGGGTTTGGAATCTT+TGG | + | chr4_2:24386895-24386914 | Msa0595320:CDS | 40.0% |
| !!! | GAACAGTGTCAGTGTTGTTT+TGG | + | chr4_2:24387081-24387100 | Msa0595320:intron | 40.0% |
| !!! | GTGTCAGTGTTGTTTTGGAA+AGG | + | chr4_2:24387086-24387105 | Msa0595320:intron | 40.0% |
| !!! | GTCAGTGTTGTTTTGGAAAG+GGG | + | chr4_2:24387088-24387107 | Msa0595320:intron | 40.0% |
| GGAAAGGGGAAAACATCAAT+TGG | + | chr4_2:24387102-24387121 | Msa0595320:intron | 40.0% | |
| AGGGGAAAACATCAATTGGA+TGG | + | chr4_2:24387106-24387125 | Msa0595320:intron | 40.0% | |
| GACCATACCATCATCATCAT+CGG | - | chr4_2:24387132-24387151 | None:intergenic | 40.0% | |
| GGTATGGTCAGAAATCGAAT+TGG | + | chr4_2:24387143-24387162 | Msa0595320:intron | 40.0% | |
| !!! | TTTTTTTTAGTGGGGGGTAC+TGG | + | chr4_2:24387296-24387315 | Msa0595320:intron | 40.0% |
| !!! | TTTTTTTAGTGGGGGGTACT+GGG | + | chr4_2:24387297-24387316 | Msa0595320:intron | 40.0% |
| !!! | TTTTTTTTAGGCCCATACCC+AGG | + | chr4_2:24387329-24387348 | Msa0595320:intron | 40.0% |
| !!! | TTTTTTTAGGCCCATACCCA+GGG | + | chr4_2:24387330-24387349 | Msa0595320:intron | 40.0% |
| ! | CTTGTGGTAGATCTAAAACC+AGG | - | chr4_2:24387400-24387419 | None:intergenic | 40.0% |
| GATAAGTTAGCCACAACTTG+TGG | - | chr4_2:24387416-24387435 | None:intergenic | 40.0% | |
| CATTTGCAGGAGGAATAGAT+TGG | - | chr4_2:24387478-24387497 | None:intergenic | 40.0% | |
| TTTGGATCCGTCACTAATCT+TGG | - | chr4_2:24387569-24387588 | None:intergenic | 40.0% | |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_2:24388197-24388216 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_2:24388198-24388217 | Msa0595320:CDS | 40.0% | |
| ! | CACAGCTGATTTAAGTGCCA+TGG | - | chr4_2:24386405-24386424 | None:intergenic | 45.0% |
| CATGGCACTTAAATCAGCTG+TGG | + | chr4_2:24386403-24386422 | Msa0595320:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_2:24386526-24386545 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_2:24386626-24386645 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_2:24386629-24386648 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_2:24386626-24386645 | Msa0595320:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_2:24386695-24386714 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_2:24386708-24386727 | Msa0595320:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_2:24386724-24386743 | Msa0595320:CDS | 45.0% |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_2:24386908-24386927 | Msa0595320:CDS | 45.0% |
| TTCCTACGAATATGGAGGCT+CGG | + | chr4_2:24387005-24387024 | Msa0595320:intron | 45.0% | |
| !! | TCGGTGCTGGAATTGAAATG+AGG | + | chr4_2:24387024-24387043 | Msa0595320:intron | 45.0% |
| CAATCGCGTTTGAACCATGA+AGG | + | chr4_2:24387204-24387223 | Msa0595320:intron | 45.0% | |
| ! | AACGAAACACTGATGGTGAG+AGG | + | chr4_2:24387236-24387255 | Msa0595320:intron | 45.0% |
| ! | AACACTGATGGTGAGAGGAA+TGG | + | chr4_2:24387241-24387260 | Msa0595320:intron | 45.0% |
| !!! | TTTTTTAGGCCCATACCCAG+GGG | + | chr4_2:24387331-24387350 | Msa0595320:intron | 45.0% |
| AATCCACTCACATGAGGTTG+GGG | - | chr4_2:24387865-24387884 | None:intergenic | 45.0% | |
| GAATCCACTCACATGAGGTT+GGG | - | chr4_2:24387866-24387885 | None:intergenic | 45.0% | |
| TGAATCCACTCACATGAGGT+TGG | - | chr4_2:24387867-24387886 | None:intergenic | 45.0% | |
| ! | TCAAGTGGGTTCTGCATGAT+TGG | + | chr4_2:24388047-24388066 | Msa0595320:intron | 45.0% |
| ! | CAAGTGGGTTCTGCATGATT+GGG | + | chr4_2:24388048-24388067 | Msa0595320:intron | 45.0% |
| AGAGACTTGAAGCCGCATAT+GGG | - | chr4_2:24388316-24388335 | None:intergenic | 45.0% | |
| ! | CACAGCTGATTTAAGTGCCA+TGG | - | chr4_2:24386405-24386424 | None:intergenic | 45.0% |
| CATGGCACTTAAATCAGCTG+TGG | + | chr4_2:24386403-24386422 | Msa0595320:CDS | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_2:24386526-24386545 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_2:24386626-24386645 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_2:24386629-24386648 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_2:24386626-24386645 | Msa0595320:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_2:24386695-24386714 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_2:24386708-24386727 | Msa0595320:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_2:24386724-24386743 | Msa0595320:CDS | 45.0% |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_2:24386908-24386927 | Msa0595320:CDS | 45.0% |
| TTCCTACGAATATGGAGGCT+CGG | + | chr4_2:24387005-24387024 | Msa0595320:intron | 45.0% | |
| !! | TCGGTGCTGGAATTGAAATG+AGG | + | chr4_2:24387024-24387043 | Msa0595320:intron | 45.0% |
| CAATCGCGTTTGAACCATGA+AGG | + | chr4_2:24387204-24387223 | Msa0595320:intron | 45.0% | |
| ! | AACGAAACACTGATGGTGAG+AGG | + | chr4_2:24387236-24387255 | Msa0595320:intron | 45.0% |
| ! | AACACTGATGGTGAGAGGAA+TGG | + | chr4_2:24387241-24387260 | Msa0595320:intron | 45.0% |
| !!! | TTTTTTAGGCCCATACCCAG+GGG | + | chr4_2:24387331-24387350 | Msa0595320:intron | 45.0% |
| AATCCACTCACATGAGGTTG+GGG | - | chr4_2:24387865-24387884 | None:intergenic | 45.0% | |
| GAATCCACTCACATGAGGTT+GGG | - | chr4_2:24387866-24387885 | None:intergenic | 45.0% | |
| TGAATCCACTCACATGAGGT+TGG | - | chr4_2:24387867-24387886 | None:intergenic | 45.0% | |
| ! | TCAAGTGGGTTCTGCATGAT+TGG | + | chr4_2:24388047-24388066 | Msa0595320:intron | 45.0% |
| ! | CAAGTGGGTTCTGCATGATT+GGG | + | chr4_2:24388048-24388067 | Msa0595320:intron | 45.0% |
| AGAGACTTGAAGCCGCATAT+GGG | - | chr4_2:24388316-24388335 | None:intergenic | 45.0% | |
| !!! | ATAATATTATTTTAATGTAT+TGG | + | chr4_2:24387981-24388000 | Msa0595320:intron | 5.0% |
| !!! | ATAATATTATTTTAATGTAT+TGG | + | chr4_2:24387981-24388000 | Msa0595320:intron | 5.0% |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_2:24386536-24386555 | Msa0595320:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_2:24386881-24386900 | Msa0595320:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr4_2:24386886-24386905 | Msa0595320:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_2:24386911-24386930 | Msa0595320:intron | 50.0% |
| ! | CTTTGGTTGATGTGGCAGGT+GGG | + | chr4_2:24386912-24386931 | Msa0595320:intron | 50.0% |
| CAGGGTCGTTCCTACGAATA+TGG | + | chr4_2:24386997-24387016 | Msa0595320:intron | 50.0% | |
| GGTCGTTCCTACGAATATGG+AGG | + | chr4_2:24387000-24387019 | Msa0595320:intron | 50.0% | |
| ! | TGGATGGCCGATGATGATGA+TGG | + | chr4_2:24387122-24387141 | Msa0595320:intron | 50.0% |
| !! | GGCCGATGATGATGATGGTA+TGG | + | chr4_2:24387127-24387146 | Msa0595320:intron | 50.0% |
| TGGTTGAGAGATGCAGTCAG+AGG | + | chr4_2:24387163-24387182 | Msa0595320:intron | 50.0% | |
| ! | GGTAGATCTAAAACCAGGGC+CGG | - | chr4_2:24387395-24387414 | None:intergenic | 50.0% |
| ATCCACTCACATGAGGTTGG+GGG | - | chr4_2:24387864-24387883 | None:intergenic | 50.0% | |
| GGCATGAATCCACTCACATG+AGG | - | chr4_2:24387871-24387890 | None:intergenic | 50.0% | |
| GAGAGACTTGAAGCCGCATA+TGG | - | chr4_2:24388317-24388336 | None:intergenic | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_2:24386536-24386555 | Msa0595320:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_2:24386881-24386900 | Msa0595320:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+TGG | + | chr4_2:24386886-24386905 | Msa0595320:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_2:24386911-24386930 | Msa0595320:intron | 50.0% |
| ! | CTTTGGTTGATGTGGCAGGT+GGG | + | chr4_2:24386912-24386931 | Msa0595320:intron | 50.0% |
| CAGGGTCGTTCCTACGAATA+TGG | + | chr4_2:24386997-24387016 | Msa0595320:intron | 50.0% | |
| GGTCGTTCCTACGAATATGG+AGG | + | chr4_2:24387000-24387019 | Msa0595320:intron | 50.0% | |
| ! | TGGATGGCCGATGATGATGA+TGG | + | chr4_2:24387122-24387141 | Msa0595320:intron | 50.0% |
| !! | GGCCGATGATGATGATGGTA+TGG | + | chr4_2:24387127-24387146 | Msa0595320:intron | 50.0% |
| TGGTTGAGAGATGCAGTCAG+AGG | + | chr4_2:24387163-24387182 | Msa0595320:intron | 50.0% | |
| ! | GGTAGATCTAAAACCAGGGC+CGG | - | chr4_2:24387395-24387414 | None:intergenic | 50.0% |
| ATCCACTCACATGAGGTTGG+GGG | - | chr4_2:24387864-24387883 | None:intergenic | 50.0% | |
| GGCATGAATCCACTCACATG+AGG | - | chr4_2:24387871-24387890 | None:intergenic | 50.0% | |
| GAGAGACTTGAAGCCGCATA+TGG | - | chr4_2:24388317-24388336 | None:intergenic | 50.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_2:24386880-24386899 | Msa0595320:CDS | 55.0% | |
| CACCGAGCCTCCATATTCGT+AGG | - | chr4_2:24387010-24387029 | None:intergenic | 55.0% | |
| GAGAGGAATGGAACGCTCGT+TGG | + | chr4_2:24387253-24387272 | Msa0595320:intron | 55.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_2:24386880-24386899 | Msa0595320:CDS | 55.0% | |
| CACCGAGCCTCCATATTCGT+AGG | - | chr4_2:24387010-24387029 | None:intergenic | 55.0% | |
| GAGAGGAATGGAACGCTCGT+TGG | + | chr4_2:24387253-24387272 | Msa0595320:intron | 55.0% | |
| GTTGATGTGGCAGGTGGGAC+TGG | + | chr4_2:24386917-24386936 | Msa0595320:intron | 60.0% | |
| !! | CGAATATGGAGGCTCGGTGC+TGG | + | chr4_2:24387011-24387030 | Msa0595320:intron | 60.0% |
| TTTAGGCCCATACCCAGGGG+AGG | + | chr4_2:24387334-24387353 | Msa0595320:intron | 60.0% | |
| ! | TATAGCACCGAGCCTCCCCT+GGG | - | chr4_2:24387349-24387368 | None:intergenic | 60.0% |
| AAAACCAGGGCCGGACCCTA+GGG | - | chr4_2:24387386-24387405 | None:intergenic | 60.0% | |
| TAAAACCAGGGCCGGACCCT+AGG | - | chr4_2:24387387-24387406 | None:intergenic | 60.0% | |
| TGCCCCCAACCTCATGTGAG+TGG | + | chr4_2:24387859-24387878 | Msa0595320:intron | 60.0% | |
| GTTGATGTGGCAGGTGGGAC+TGG | + | chr4_2:24386917-24386936 | Msa0595320:intron | 60.0% | |
| !! | CGAATATGGAGGCTCGGTGC+TGG | + | chr4_2:24387011-24387030 | Msa0595320:intron | 60.0% |
| TTTAGGCCCATACCCAGGGG+AGG | + | chr4_2:24387334-24387353 | Msa0595320:intron | 60.0% | |
| ! | TATAGCACCGAGCCTCCCCT+GGG | - | chr4_2:24387349-24387368 | None:intergenic | 60.0% |
| AAAACCAGGGCCGGACCCTA+GGG | - | chr4_2:24387386-24387405 | None:intergenic | 60.0% | |
| TAAAACCAGGGCCGGACCCT+AGG | - | chr4_2:24387387-24387406 | None:intergenic | 60.0% | |
| TGCCCCCAACCTCATGTGAG+TGG | + | chr4_2:24387859-24387878 | Msa0595320:intron | 60.0% | |
| ACCGAGCCTCCCCTGGGTAT+GGG | - | chr4_2:24387343-24387362 | None:intergenic | 65.0% | |
| ! | CTATAGCACCGAGCCTCCCC+TGG | - | chr4_2:24387350-24387369 | None:intergenic | 65.0% |
| TAGCGCTGCTTGCACCCCCT+AGG | + | chr4_2:24387367-24387386 | Msa0595320:intron | 65.0% | |
| AGCGCTGCTTGCACCCCCTA+GGG | + | chr4_2:24387368-24387387 | Msa0595320:intron | 65.0% | |
| TGCTTGCACCCCCTAGGGTC+CGG | + | chr4_2:24387373-24387392 | Msa0595320:intron | 65.0% | |
| AAACCAGGGCCGGACCCTAG+GGG | - | chr4_2:24387385-24387404 | None:intergenic | 65.0% | |
| ACCGAGCCTCCCCTGGGTAT+GGG | - | chr4_2:24387343-24387362 | None:intergenic | 65.0% | |
| ! | CTATAGCACCGAGCCTCCCC+TGG | - | chr4_2:24387350-24387369 | None:intergenic | 65.0% |
| TAGCGCTGCTTGCACCCCCT+AGG | + | chr4_2:24387367-24387386 | Msa0595320:intron | 65.0% | |
| AGCGCTGCTTGCACCCCCTA+GGG | + | chr4_2:24387368-24387387 | Msa0595320:intron | 65.0% | |
| TGCTTGCACCCCCTAGGGTC+CGG | + | chr4_2:24387373-24387392 | Msa0595320:intron | 65.0% | |
| AAACCAGGGCCGGACCCTAG+GGG | - | chr4_2:24387385-24387404 | None:intergenic | 65.0% | |
| GCCCATACCCAGGGGAGGCT+CGG | + | chr4_2:24387339-24387358 | Msa0595320:intron | 70.0% | |
| CACCGAGCCTCCCCTGGGTA+TGG | - | chr4_2:24387344-24387363 | None:intergenic | 70.0% | |
| AACCAGGGCCGGACCCTAGG+GGG | - | chr4_2:24387384-24387403 | None:intergenic | 70.0% | |
| GCCCATACCCAGGGGAGGCT+CGG | + | chr4_2:24387339-24387358 | Msa0595320:intron | 70.0% | |
| CACCGAGCCTCCCCTGGGTA+TGG | - | chr4_2:24387344-24387363 | None:intergenic | 70.0% | |
| AACCAGGGCCGGACCCTAGG+GGG | - | chr4_2:24387384-24387403 | None:intergenic | 70.0% | |
| ! | CACCCCCTAGGGTCCGGCCC+TGG | + | chr4_2:24387379-24387398 | Msa0595320:intron | 80.0% |
| ! | CACCCCCTAGGGTCCGGCCC+TGG | + | chr4_2:24387379-24387398 | Msa0595320:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 24386314 | 24388357 | 24386314 | ID=Msa0595320;Name=Msa0595320 |
| chr4_2 | mRNA | 24386314 | 24388357 | 24386314 | ID=Msa0595320-mRNA-1;Parent=Msa0595320;Name=Msa0595320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|322 |
| chr4_2 | exon | 24386314 | 24386929 | 24386314 | ID=Msa0595320-mRNA-1:exon:6560;Parent=Msa0595320-mRNA-1 |
| chr4_2 | exon | 24387465 | 24387511 | 24387465 | ID=Msa0595320-mRNA-1:exon:6561;Parent=Msa0595320-mRNA-1 |
| chr4_2 | exon | 24388052 | 24388357 | 24388052 | ID=Msa0595320-mRNA-1:exon:6562;Parent=Msa0595320-mRNA-1 |
| chr4_2 | CDS | 24386314 | 24386929 | 24386314 | ID=Msa0595320-mRNA-1:cds;Parent=Msa0595320-mRNA-1 |
| chr4_2 | CDS | 24387465 | 24387511 | 24387465 | ID=Msa0595320-mRNA-1:cds;Parent=Msa0595320-mRNA-1 |
| chr4_2 | CDS | 24388052 | 24388357 | 24388052 | ID=Msa0595320-mRNA-1:cds;Parent=Msa0595320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
