Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595350 | XP_039689920.1 | 96.961 | 362 | 6 | 1 | 1 | 362 | 1 | 357 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595350 | sp|O24305|M3OM1_PEA | 78.453 | 362 | 76 | 1 | 1 | 362 | 1 | 360 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595350 | A0A072UJL0 | 96.685 | 362 | 7 | 1 | 1 | 362 | 1 | 357 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539590 | Msa0595350 | 0.808582 | 2.885598e-50 | -8.615850e-47 |
| Msa0595320 | Msa0595350 | 0.812163 | 4.868002e-51 | -8.615850e-47 |
| Msa0595350 | Msa0635020 | 0.825168 | 5.429105e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595350 | MtrunA17_Chr4g0014591 | 96.685 | 362 | 7 | 1 | 1 | 362 | 1 | 357 | 0.0 | 713 |
| Msa0595350 | MtrunA17_Chr4g0014661 | 96.133 | 362 | 9 | 1 | 1 | 362 | 1 | 357 | 0.0 | 709 |
| Msa0595350 | MtrunA17_Chr4g0046361 | 77.348 | 362 | 81 | 1 | 1 | 362 | 1 | 361 | 0.0 | 580 |
| Msa0595350 | MtrunA17_Chr4g0014681 | 78.512 | 363 | 77 | 1 | 1 | 362 | 1 | 363 | 0.0 | 576 |
| Msa0595350 | MtrunA17_Chr4g0014561 | 77.961 | 363 | 79 | 1 | 1 | 362 | 1 | 363 | 0.0 | 572 |
| Msa0595350 | MtrunA17_Chr4g0014641 | 76.860 | 363 | 83 | 1 | 1 | 362 | 1 | 363 | 0.0 | 563 |
| Msa0595350 | MtrunA17_Chr4g0046341 | 77.198 | 364 | 81 | 1 | 1 | 362 | 1 | 364 | 0.0 | 548 |
| Msa0595350 | MtrunA17_Chr4g0014601 | 95.472 | 265 | 7 | 1 | 1 | 265 | 1 | 260 | 0.0 | 513 |
| Msa0595350 | MtrunA17_Chr7g0219141 | 48.459 | 357 | 179 | 4 | 6 | 362 | 6 | 357 | 7.38e-121 | 353 |
| Msa0595350 | MtrunA17_Chr1g0188391 | 49.315 | 365 | 178 | 5 | 1 | 362 | 1 | 361 | 1.36e-119 | 350 |
| Msa0595350 | MtrunA17_Chr7g0219161 | 48.986 | 345 | 171 | 4 | 6 | 350 | 6 | 345 | 5.63e-118 | 346 |
| Msa0595350 | MtrunA17_Chr5g0432251 | 48.023 | 354 | 177 | 5 | 11 | 362 | 11 | 359 | 5.16e-116 | 340 |
| Msa0595350 | MtrunA17_Chr7g0223231 | 47.887 | 355 | 174 | 5 | 6 | 360 | 5 | 348 | 6.60e-116 | 340 |
| Msa0595350 | MtrunA17_Chr5g0432301 | 46.154 | 364 | 186 | 6 | 3 | 361 | 1 | 359 | 3.71e-113 | 333 |
| Msa0595350 | MtrunA17_Chr5g0432241 | 45.983 | 361 | 188 | 5 | 4 | 362 | 5 | 360 | 2.15e-110 | 326 |
| Msa0595350 | MtrunA17_Chr4g0046531 | 50.000 | 362 | 173 | 5 | 1 | 361 | 1 | 355 | 2.67e-109 | 335 |
| Msa0595350 | MtrunA17_Chr4g0046531 | 49.311 | 363 | 176 | 5 | 1 | 362 | 363 | 718 | 1.12e-107 | 331 |
| Msa0595350 | MtrunA17_Chr7g0223241 | 47.042 | 355 | 177 | 5 | 6 | 360 | 5 | 348 | 5.51e-109 | 322 |
| Msa0595350 | MtrunA17_Chr5g0432261 | 44.886 | 352 | 163 | 3 | 11 | 362 | 7 | 327 | 8.15e-105 | 311 |
| Msa0595350 | MtrunA17_Chr5g0432211 | 44.350 | 354 | 176 | 6 | 11 | 362 | 11 | 345 | 2.06e-103 | 308 |
| Msa0595350 | MtrunA17_Chr4g0040621 | 44.193 | 353 | 189 | 3 | 11 | 362 | 24 | 369 | 2.22e-101 | 304 |
| Msa0595350 | MtrunA17_Chr1g0188371 | 46.746 | 338 | 170 | 6 | 9 | 342 | 9 | 340 | 1.36e-96 | 292 |
| Msa0595350 | MtrunA17_Chr3g0121301 | 35.860 | 343 | 204 | 10 | 20 | 358 | 27 | 357 | 1.14e-55 | 186 |
| Msa0595350 | MtrunA17_Chr4g0022021 | 33.791 | 364 | 228 | 9 | 3 | 362 | 14 | 368 | 1.66e-55 | 186 |
| Msa0595350 | MtrunA17_Chr4g0021981 | 33.516 | 364 | 229 | 9 | 3 | 362 | 14 | 368 | 2.46e-54 | 182 |
| Msa0595350 | MtrunA17_Chr7g0219171 | 58.209 | 134 | 55 | 1 | 229 | 362 | 116 | 248 | 5.04e-50 | 168 |
| Msa0595350 | MtrunA17_Chr7g0219171 | 43.590 | 117 | 60 | 1 | 6 | 122 | 6 | 116 | 7.03e-27 | 107 |
| Msa0595350 | MtrunA17_Chr4g0014611 | 96.000 | 100 | 4 | 0 | 263 | 362 | 8 | 107 | 2.51e-45 | 150 |
| Msa0595350 | MtrunA17_Chr1g0200491 | 30.484 | 351 | 227 | 7 | 5 | 348 | 17 | 357 | 7.35e-42 | 150 |
| Msa0595350 | MtrunA17_Chr4g0014671 | 96.190 | 105 | 4 | 0 | 258 | 362 | 30 | 134 | 7.65e-42 | 142 |
| Msa0595350 | MtrunA17_Chr5g0448091 | 31.858 | 339 | 211 | 13 | 29 | 358 | 31 | 358 | 4.06e-41 | 148 |
| Msa0595350 | MtrunA17_Chr3g0128011 | 32.203 | 354 | 205 | 11 | 9 | 348 | 71 | 403 | 7.55e-41 | 148 |
| Msa0595350 | MtrunA17_Chr1g0163601 | 30.030 | 333 | 220 | 6 | 24 | 349 | 29 | 355 | 2.60e-39 | 143 |
| Msa0595350 | MtrunA17_Chr8g0367501 | 29.752 | 363 | 240 | 9 | 5 | 360 | 6 | 360 | 5.81e-39 | 143 |
| Msa0595350 | MtrunA17_Chr1g0163611 | 29.107 | 347 | 231 | 7 | 24 | 361 | 29 | 369 | 7.33e-39 | 142 |
| Msa0595350 | MtrunA17_Chr7g0218131 | 29.377 | 337 | 224 | 8 | 32 | 361 | 40 | 369 | 1.17e-38 | 141 |
| Msa0595350 | MtrunA17_Chr8g0367441 | 30.769 | 325 | 211 | 8 | 26 | 343 | 41 | 358 | 1.27e-38 | 141 |
| Msa0595350 | MtrunA17_Chr7g0276401 | 31.157 | 337 | 217 | 10 | 26 | 357 | 42 | 368 | 1.39e-38 | 141 |
| Msa0595350 | MtrunA17_Chr7g0276411 | 31.003 | 329 | 213 | 8 | 26 | 347 | 26 | 347 | 1.40e-38 | 141 |
| Msa0595350 | MtrunA17_Chr7g0218301 | 29.204 | 339 | 222 | 7 | 32 | 360 | 40 | 370 | 3.67e-38 | 140 |
| Msa0595350 | MtrunA17_Chr7g0218271 | 28.909 | 339 | 223 | 7 | 32 | 360 | 40 | 370 | 9.80e-38 | 139 |
| Msa0595350 | MtrunA17_Chr8g0367491 | 29.377 | 337 | 223 | 9 | 26 | 354 | 40 | 369 | 1.18e-37 | 139 |
| Msa0595350 | MtrunA17_Chr7g0218261 | 28.529 | 333 | 226 | 7 | 32 | 360 | 39 | 363 | 2.17e-37 | 138 |
| Msa0595350 | MtrunA17_Chr7g0218181 | 27.729 | 339 | 224 | 10 | 32 | 361 | 40 | 366 | 6.63e-37 | 136 |
| Msa0595350 | MtrunA17_Chr8g0367451 | 30.462 | 325 | 212 | 8 | 26 | 343 | 40 | 357 | 6.74e-37 | 137 |
| Msa0595350 | MtrunA17_Chr2g0314271 | 33.333 | 327 | 194 | 10 | 31 | 347 | 27 | 339 | 2.20e-36 | 135 |
| Msa0595350 | MtrunA17_Chr1g0163621 | 28.614 | 332 | 224 | 6 | 25 | 349 | 44 | 369 | 9.52e-36 | 134 |
| Msa0595350 | MtrunA17_Chr2g0307521 | 28.869 | 336 | 221 | 8 | 32 | 360 | 34 | 358 | 1.63e-35 | 133 |
| Msa0595350 | MtrunA17_Chr3g0085211 | 30.675 | 326 | 215 | 7 | 28 | 349 | 38 | 356 | 1.00e-34 | 130 |
| Msa0595350 | MtrunA17_Chr7g0218211 | 29.042 | 334 | 224 | 7 | 32 | 360 | 39 | 364 | 1.68e-34 | 130 |
| Msa0595350 | MtrunA17_Chr3g0085201 | 30.539 | 334 | 212 | 11 | 32 | 357 | 29 | 350 | 2.02e-32 | 124 |
| Msa0595350 | MtrunA17_Chr8g0345851 | 32.171 | 258 | 160 | 7 | 97 | 349 | 30 | 277 | 6.80e-32 | 121 |
| Msa0595350 | MtrunA17_Chr8g0367381 | 29.677 | 310 | 187 | 8 | 26 | 329 | 41 | 325 | 1.87e-31 | 121 |
| Msa0595350 | MtrunA17_Chr4g0014621 | 96.970 | 66 | 2 | 0 | 297 | 362 | 197 | 262 | 5.90e-29 | 112 |
| Msa0595350 | MtrunA17_Chr3g0130011 | 27.666 | 347 | 230 | 11 | 23 | 361 | 24 | 357 | 1.10e-27 | 111 |
| Msa0595350 | MtrunA17_Chr3g0130061 | 27.327 | 333 | 221 | 11 | 23 | 347 | 24 | 343 | 1.17e-25 | 105 |
| Msa0595350 | MtrunA17_Chr8g0367461 | 37.963 | 108 | 62 | 3 | 249 | 354 | 1 | 105 | 5.48e-18 | 79.0 |
| Msa0595350 | MtrunA17_Chr6g0482291 | 29.560 | 159 | 100 | 3 | 190 | 347 | 14 | 161 | 7.17e-17 | 77.8 |
| Msa0595350 | MtrunA17_Chr8g0367401 | 33.945 | 109 | 70 | 1 | 154 | 262 | 4 | 110 | 2.50e-13 | 66.6 |
| Msa0595350 | MtrunA17_Chr4g0014551 | 88.636 | 44 | 5 | 0 | 319 | 362 | 1 | 44 | 3.01e-13 | 63.5 |
| Msa0595350 | MtrunA17_Chr4g0011691 | 36.634 | 101 | 55 | 3 | 6 | 106 | 16 | 107 | 9.67e-13 | 67.4 |
| Msa0595350 | MtrunA17_Chr4g0011691 | 39.583 | 96 | 54 | 3 | 264 | 358 | 140 | 232 | 2.07e-11 | 63.2 |
| Msa0595350 | MtrunA17_Chr8g0367391 | 32.203 | 118 | 73 | 4 | 233 | 347 | 6 | 119 | 8.07e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595350 | AT4G35150.1 | 31.933 | 357 | 184 | 10 | 16 | 361 | 15 | 323 | 1.04e-45 | 159 |
| Msa0595350 | AT4G35160.1 | 33.333 | 363 | 214 | 11 | 16 | 361 | 29 | 380 | 5.27e-44 | 156 |
| Msa0595350 | AT5G54160.1 | 31.161 | 353 | 224 | 8 | 8 | 349 | 4 | 348 | 3.30e-42 | 151 |
| Msa0595350 | AT1G77520.1 | 31.977 | 344 | 214 | 9 | 31 | 361 | 44 | 380 | 1.04e-39 | 145 |
| Msa0595350 | AT3G53140.1 | 31.977 | 344 | 205 | 11 | 31 | 359 | 27 | 356 | 6.49e-37 | 137 |
| Msa0595350 | AT1G51990.2 | 32.153 | 339 | 213 | 10 | 33 | 362 | 32 | 362 | 9.88e-37 | 136 |
| Msa0595350 | AT1G33030.1 | 29.607 | 331 | 215 | 10 | 31 | 352 | 21 | 342 | 5.90e-36 | 134 |
| Msa0595350 | AT5G53810.1 | 32.277 | 347 | 214 | 10 | 29 | 361 | 38 | 377 | 8.66e-36 | 134 |
| Msa0595350 | AT1G51990.1 | 32.153 | 339 | 213 | 10 | 33 | 362 | 32 | 362 | 1.07e-35 | 134 |
| Msa0595350 | AT1G63140.4 | 29.444 | 360 | 229 | 12 | 9 | 352 | 39 | 389 | 2.06e-31 | 123 |
| Msa0595350 | AT1G63140.2 | 29.444 | 360 | 229 | 12 | 9 | 352 | 19 | 369 | 2.15e-31 | 122 |
| Msa0595350 | AT1G77530.1 | 31.686 | 344 | 215 | 9 | 31 | 361 | 44 | 380 | 9.64e-31 | 120 |
| Msa0595350 | AT1G76790.1 | 27.717 | 368 | 221 | 13 | 7 | 354 | 9 | 351 | 7.20e-26 | 107 |
| Msa0595350 | AT1G62900.1 | 32.812 | 192 | 124 | 3 | 172 | 361 | 16 | 204 | 2.25e-23 | 96.7 |
| Msa0595350 | AT1G21130.1 | 26.647 | 334 | 217 | 10 | 31 | 349 | 40 | 360 | 2.01e-21 | 94.7 |
| Msa0595350 | AT1G21100.1 | 26.647 | 334 | 217 | 10 | 31 | 349 | 40 | 360 | 9.44e-21 | 92.8 |
| Msa0595350 | AT1G21110.1 | 26.140 | 329 | 215 | 10 | 31 | 344 | 40 | 355 | 4.04e-20 | 90.9 |
| Msa0595350 | AT5G37170.2 | 28.866 | 194 | 132 | 4 | 171 | 361 | 43 | 233 | 1.86e-19 | 86.7 |
| Msa0595350 | AT1G21120.1 | 25.904 | 332 | 218 | 10 | 31 | 347 | 40 | 358 | 4.60e-19 | 87.8 |
| Msa0595350 | AT5G37170.1 | 28.866 | 194 | 132 | 4 | 171 | 361 | 143 | 333 | 5.68e-19 | 87.0 |
| Msa0595350 | AT1G21120.2 | 25.749 | 334 | 220 | 10 | 31 | 349 | 88 | 408 | 5.81e-19 | 88.2 |
| Msa0595350 | AT5G37170.3 | 29.032 | 186 | 126 | 4 | 177 | 359 | 1 | 183 | 3.40e-18 | 82.0 |
| Msa0595350 | AT1G33030.2 | 26.471 | 238 | 163 | 7 | 31 | 262 | 21 | 252 | 2.68e-14 | 72.4 |
| Msa0595350 | AT1G63140.1 | 27.612 | 268 | 176 | 8 | 9 | 262 | 39 | 302 | 3.65e-14 | 72.8 |
| Msa0595350 | AT1G33030.3 | 26.471 | 238 | 163 | 7 | 31 | 262 | 21 | 252 | 5.40e-14 | 72.0 |
Find 73 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATACATGTTTGTATAAA+TGG | 0.173388 | 4_2:-24413202 | None:intergenic |
| GCTGTTCTTCAATATCTTTA+AGG | 0.222796 | 4_2:-24414537 | None:intergenic |
| TATAGGACATTAACTTTAGA+AGG | 0.248539 | 4_2:-24413341 | None:intergenic |
| TTCAAAGATGAGGCTAATTC+AGG | 0.265492 | 4_2:-24413311 | None:intergenic |
| CAAAGTGGGTTCTGCATGAT+TGG | 0.295304 | 4_2:+24414501 | Msa0595350:intron |
| CTCAGAGAACCATTTCTTAG+AGG | 0.305502 | 4_2:-24413552 | None:intergenic |
| TTGGGAAATTCATGTTTCAT+AGG | 0.306052 | 4_2:-24414906 | None:intergenic |
| ACAACTACAAATTAAAATTA+AGG | 0.312416 | 4_2:-24414803 | None:intergenic |
| AACAGCAAAGAAGCTATTTC+AGG | 0.318216 | 4_2:+24414554 | Msa0595350:CDS |
| GTTTGAGGGTTCGGAATCTT+TGG | 0.369730 | 4_2:+24413730 | Msa0595350:CDS |
| CTAAAGTTAATGTCCTATAT+AGG | 0.375731 | 4_2:+24413345 | Msa0595350:CDS |
| CAGCCATGTGTTTGAGGGTT+CGG | 0.376854 | 4_2:+24413721 | Msa0595350:CDS |
| GTTGATGTGGCAGGTGGAAC+TGG | 0.385377 | 4_2:+24413752 | Msa0595350:CDS |
| AAAGAAGCTATTTCAGGAAA+AGG | 0.388596 | 4_2:+24414560 | Msa0595350:CDS |
| CCACTGATGAGAAGCTTTGA+AGG | 0.393766 | 4_2:-24413461 | None:intergenic |
| AATTCTTCATCCATGTTCTC+TGG | 0.398747 | 4_2:+24413517 | Msa0595350:CDS |
| CTCAAATCAGCTGTGGAACT+TGG | 0.404196 | 4_2:+24413245 | Msa0595350:CDS |
| AGAGACTTGAAGCCACATAT+TGG | 0.418939 | 4_2:-24414767 | None:intergenic |
| GCACTCTATGAAAGTGCAAT+GGG | 0.425564 | 4_2:+24413587 | Msa0595350:CDS |
| AGCTTAATCTATAAAACAAA+TGG | 0.426682 | 4_2:+24413130 | Msa0595350:exon |
| CAGGTTGTGGCTAACTTATC+TGG | 0.432889 | 4_2:+24413839 | Msa0595350:CDS |
| GTAATGATGACTCTGCATAA+TGG | 0.436305 | 4_2:+24414674 | Msa0595350:CDS |
| GATAAACTTAGCTTGTTTCA+AGG | 0.437048 | 4_2:+24413650 | Msa0595350:CDS |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.452397 | 4_2:+24413543 | Msa0595350:CDS |
| ACTCAAAATTTGAACTTTGT+TGG | 0.456655 | 4_2:+24413863 | Msa0595350:CDS |
| CAAAATTTGAACTTTGTTGG+TGG | 0.461431 | 4_2:+24413866 | Msa0595350:CDS |
| GCAAGCGCAAGAACCTATAT+AGG | 0.464145 | 4_2:-24413358 | None:intergenic |
| GACTGCAGCCATGTGTTTGA+GGG | 0.469939 | 4_2:+24413716 | Msa0595350:CDS |
| ATAAACTTAGCTTGTTTCAA+GGG | 0.472913 | 4_2:+24413651 | Msa0595350:CDS |
| AATGTTTAAGCTTGCTCTCA+AGG | 0.478021 | 4_2:+24413694 | Msa0595350:CDS |
| GGACTGCAGCCATGTGTTTG+AGG | 0.478258 | 4_2:+24413715 | Msa0595350:CDS |
| ACAACAGTGAAAGGCAAAGA+AGG | 0.480635 | 4_2:+24413407 | Msa0595350:CDS |
| TCAAAGGCTTTCCATGCTTG+TGG | 0.483307 | 4_2:-24413283 | None:intergenic |
| AAGAAGCTATTTCAGGAAAA+GGG | 0.484470 | 4_2:+24414561 | Msa0595350:CDS |
| AAAGTGGGTTCTGCATGATT+GGG | 0.491554 | 4_2:+24414502 | Msa0595350:intron |
| ATCCATGTTCTCTGGATATG+TGG | 0.500274 | 4_2:+24413525 | Msa0595350:CDS |
| ATATATACATTTCAAAATCC+AGG | 0.502207 | 4_2:-24413052 | None:intergenic |
| TACAAGATTACTCCAATATG+TGG | 0.506969 | 4_2:+24414755 | Msa0595350:CDS |
| TTTAGATCAACCACAGGTTG+TGG | 0.518679 | 4_2:+24413826 | Msa0595350:CDS |
| CACAGCTGATTTGAGTGCCA+TGG | 0.520024 | 4_2:-24413237 | None:intergenic |
| TTCGGAATCTTTGGTTGATG+TGG | 0.524768 | 4_2:+24413739 | Msa0595350:CDS |
| GAATCTTTGGTTGATGTGGC+AGG | 0.529321 | 4_2:+24413743 | Msa0595350:CDS |
| TGCACTCTATGAAAGTGCAA+TGG | 0.533425 | 4_2:+24413586 | Msa0595350:CDS |
| TTCGCGAAAACAACAGTGAA+AGG | 0.541145 | 4_2:+24413398 | Msa0595350:CDS |
| GAAATGGTTCTCTGAGGAGA+AGG | 0.549990 | 4_2:+24413559 | Msa0595350:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_2:-24413911 | None:intergenic |
| CATTTGTGAATCAGCTGCCA+TGG | 0.558343 | 4_2:-24413675 | None:intergenic |
| CAAATGGATTTCAAAAGCAA+TGG | 0.568427 | 4_2:+24413146 | Msa0595350:exon |
| ATACAGCTTTATAAGTTCCA+TGG | 0.573273 | 4_2:+24413220 | Msa0595350:CDS |
| GTTGCAATTGCACTTTGACA+TGG | 0.578956 | 4_2:+24414652 | Msa0595350:CDS |
| ATAGGACATTAACTTTAGAA+GGG | 0.580560 | 4_2:-24413340 | None:intergenic |
| CCTTCAAAGCTTCTCATCAG+TGG | 0.586184 | 4_2:+24413461 | Msa0595350:CDS |
| GTAGATGCAATCCACAAGCA+TGG | 0.588262 | 4_2:+24413272 | Msa0595350:CDS |
| GCTAATTCAGGAACAGTCAA+AGG | 0.590671 | 4_2:-24413299 | None:intergenic |
| TGCCACATATCCAGAGAACA+TGG | 0.593078 | 4_2:-24413527 | None:intergenic |
| GTCAAAGTGCAATTGCAACT+CGG | 0.597693 | 4_2:-24414648 | None:intergenic |
| TAGCTTGTTTCAAGGGGCCA+TGG | 0.600696 | 4_2:+24413658 | Msa0595350:CDS |
| TAAACTTAGCTTGTTTCAAG+GGG | 0.605007 | 4_2:+24413652 | Msa0595350:CDS |
| AGGGTGAAGTTTCAAAGATG+AGG | 0.607728 | 4_2:-24413321 | None:intergenic |
| TCTTTGGTTGATGTGGCAGG+TGG | 0.622986 | 4_2:+24413746 | Msa0595350:CDS |
| AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4_2:-24413908 | None:intergenic |
| CATGGCACTCAAATCAGCTG+TGG | 0.632130 | 4_2:+24413238 | Msa0595350:CDS |
| GATAAGTTAGCCACAACCTG+TGG | 0.634807 | 4_2:-24413836 | None:intergenic |
| CACTCTATGAAAGTGCAATG+GGG | 0.635539 | 4_2:+24413588 | Msa0595350:CDS |
| ACTCTATGAAAGTGCAATGG+GGG | 0.643797 | 4_2:+24413589 | Msa0595350:CDS |
| ATTCCGAACCCTCAAACACA+TGG | 0.645998 | 4_2:-24413724 | None:intergenic |
| TTGCGCTTGCTAACACACGA+TGG | 0.651331 | 4_2:+24413371 | Msa0595350:CDS |
| AAAACTGTGCATTTGATGTG+AGG | 0.654544 | 4_2:-24413806 | None:intergenic |
| TGAAGAATTCCCTTAACAAG+TGG | 0.661082 | 4_2:-24413503 | None:intergenic |
| AAGAAACTCATATATGACGC+AGG | 0.661175 | 4_2:+24414722 | Msa0595350:CDS |
| CTCTAAGAAATGGTTCTCTG+AGG | 0.677453 | 4_2:+24413553 | Msa0595350:CDS |
| GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4_2:-24413907 | None:intergenic |
| CTGATGAGAAGCTTTGAAGG+AGG | 0.702373 | 4_2:-24413458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATGTTATTATTTTTTA+GGG | - | chr4_2:24414121-24414140 | None:intergenic | 10.0% |
| !!! | TAATGATGTTATTATTTTTT+AGG | - | chr4_2:24414122-24414141 | None:intergenic | 10.0% |
| !!! | AATGATGTTATTATTTTTTA+GGG | - | chr4_2:24414121-24414140 | None:intergenic | 10.0% |
| !!! | TAATGATGTTATTATTTTTT+AGG | - | chr4_2:24414122-24414141 | None:intergenic | 10.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr4_2:24413618-24413637 | None:intergenic | 15.0% |
| !! | AAGTGATAAAATAATAACAT+CGG | + | chr4_2:24414087-24414106 | Msa0595350:intron | 15.0% |
| !! | ACAACTACAAATTAAAATTA+AGG | - | chr4_2:24414806-24414825 | None:intergenic | 15.0% |
| !! | TTTGTTAAGAAAGTTAAAAA+AGG | - | chr4_2:24413618-24413637 | None:intergenic | 15.0% |
| !! | AAGTGATAAAATAATAACAT+CGG | + | chr4_2:24414087-24414106 | Msa0595350:intron | 15.0% |
| !! | ACAACTACAAATTAAAATTA+AGG | - | chr4_2:24414806-24414825 | None:intergenic | 15.0% |
| !! | ATATATACATTTCAAAATCC+AGG | - | chr4_2:24413055-24413074 | None:intergenic | 20.0% |
| !!! | TTGTTTTATAGATTAAGCTT+TGG | - | chr4_2:24413129-24413148 | None:intergenic | 20.0% |
| !! | AGCTTAATCTATAAAACAAA+TGG | + | chr4_2:24413130-24413149 | Msa0595350:exon | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_2:24413205-24413224 | None:intergenic | 20.0% |
| !! | AAATCATGGACAAAATAAAA+TGG | - | chr4_2:24413973-24413992 | None:intergenic | 20.0% |
| !!! | ATCCATAAATTTTTACTTGT+GGG | + | chr4_2:24414014-24414033 | Msa0595350:intron | 20.0% |
| !!! | CATTAATTTTAATCTCTAGA+TGG | - | chr4_2:24414214-24414233 | None:intergenic | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr4_2:24414699-24414718 | Msa0595350:CDS | 20.0% |
| !! | ATATATACATTTCAAAATCC+AGG | - | chr4_2:24413055-24413074 | None:intergenic | 20.0% |
| !!! | TTGTTTTATAGATTAAGCTT+TGG | - | chr4_2:24413129-24413148 | None:intergenic | 20.0% |
| !! | AGCTTAATCTATAAAACAAA+TGG | + | chr4_2:24413130-24413149 | Msa0595350:exon | 20.0% |
| !! | TGTATACATGTTTGTATAAA+TGG | - | chr4_2:24413205-24413224 | None:intergenic | 20.0% |
| !! | AAATCATGGACAAAATAAAA+TGG | - | chr4_2:24413973-24413992 | None:intergenic | 20.0% |
| !!! | ATCCATAAATTTTTACTTGT+GGG | + | chr4_2:24414014-24414033 | Msa0595350:intron | 20.0% |
| !!! | CATTAATTTTAATCTCTAGA+TGG | - | chr4_2:24414214-24414233 | None:intergenic | 20.0% |
| !! | AAGAAAGAGAAAAAAAAGAA+TGG | + | chr4_2:24414699-24414718 | Msa0595350:CDS | 20.0% |
| !! | ATAGGACATTAACTTTAGAA+GGG | - | chr4_2:24413343-24413362 | None:intergenic | 25.0% |
| ! | TATAGGACATTAACTTTAGA+AGG | - | chr4_2:24413344-24413363 | None:intergenic | 25.0% |
| ! | CTAAAGTTAATGTCCTATAT+AGG | + | chr4_2:24413345-24413364 | Msa0595350:CDS | 25.0% |
| !!! | ATAAACTTAGCTTGTTTCAA+GGG | + | chr4_2:24413651-24413670 | Msa0595350:CDS | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | + | chr4_2:24413863-24413882 | Msa0595350:CDS | 25.0% |
| ! | TAATCCTGATTATGAAATCA+TGG | - | chr4_2:24413987-24414006 | None:intergenic | 25.0% |
| !! | GATCCATAAATTTTTACTTG+TGG | + | chr4_2:24414013-24414032 | Msa0595350:intron | 25.0% |
| !! | ATAGGACATTAACTTTAGAA+GGG | - | chr4_2:24413343-24413362 | None:intergenic | 25.0% |
| ! | TATAGGACATTAACTTTAGA+AGG | - | chr4_2:24413344-24413363 | None:intergenic | 25.0% |
| ! | CTAAAGTTAATGTCCTATAT+AGG | + | chr4_2:24413345-24413364 | Msa0595350:CDS | 25.0% |
| !!! | ATAAACTTAGCTTGTTTCAA+GGG | + | chr4_2:24413651-24413670 | Msa0595350:CDS | 25.0% |
| ! | ACTCAAAATTTGAACTTTGT+TGG | + | chr4_2:24413863-24413882 | Msa0595350:CDS | 25.0% |
| ! | TAATCCTGATTATGAAATCA+TGG | - | chr4_2:24413987-24414006 | None:intergenic | 25.0% |
| !! | GATCCATAAATTTTTACTTG+TGG | + | chr4_2:24414013-24414032 | Msa0595350:intron | 25.0% |
| ! | CAAATGGATTTCAAAAGCAA+TGG | + | chr4_2:24413146-24413165 | Msa0595350:exon | 30.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr4_2:24413220-24413239 | Msa0595350:CDS | 30.0% |
| !! | GATAAACTTAGCTTGTTTCA+AGG | + | chr4_2:24413650-24413669 | Msa0595350:CDS | 30.0% |
| !! | TAAACTTAGCTTGTTTCAAG+GGG | + | chr4_2:24413652-24413671 | Msa0595350:CDS | 30.0% |
| CAAAATTTGAACTTTGTTGG+TGG | + | chr4_2:24413866-24413885 | Msa0595350:CDS | 30.0% | |
| TTGTCCATGATTTCATAATC+AGG | + | chr4_2:24413980-24413999 | Msa0595350:intron | 30.0% | |
| ! | TTCATAATCAGGATTAGTGA+CGG | + | chr4_2:24413991-24414010 | Msa0595350:intron | 30.0% |
| CTCCCACAAGTAAAAATTTA+TGG | - | chr4_2:24414019-24414038 | None:intergenic | 30.0% | |
| CATAGATTTATATCCTGATC+AGG | - | chr4_2:24414345-24414364 | None:intergenic | 30.0% | |
| !! | AGCTCAAATGTTTTTCAAAG+TGG | + | chr4_2:24414486-24414505 | Msa0595350:intron | 30.0% |
| !! | GCTCAAATGTTTTTCAAAGT+GGG | + | chr4_2:24414487-24414506 | Msa0595350:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_2:24414540-24414559 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_2:24414560-24414579 | Msa0595350:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_2:24414561-24414580 | Msa0595350:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_2:24414569-24414588 | Msa0595350:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+TGG | + | chr4_2:24414755-24414774 | Msa0595350:CDS | 30.0% | |
| TTGGGAAATTCATGTTTCAT+AGG | - | chr4_2:24414909-24414928 | None:intergenic | 30.0% | |
| ! | CAAATGGATTTCAAAAGCAA+TGG | + | chr4_2:24413146-24413165 | Msa0595350:exon | 30.0% |
| ! | ATACAGCTTTATAAGTTCCA+TGG | + | chr4_2:24413220-24413239 | Msa0595350:CDS | 30.0% |
| !! | GATAAACTTAGCTTGTTTCA+AGG | + | chr4_2:24413650-24413669 | Msa0595350:CDS | 30.0% |
| !! | TAAACTTAGCTTGTTTCAAG+GGG | + | chr4_2:24413652-24413671 | Msa0595350:CDS | 30.0% |
| CAAAATTTGAACTTTGTTGG+TGG | + | chr4_2:24413866-24413885 | Msa0595350:CDS | 30.0% | |
| TTGTCCATGATTTCATAATC+AGG | + | chr4_2:24413980-24413999 | Msa0595350:intron | 30.0% | |
| ! | TTCATAATCAGGATTAGTGA+CGG | + | chr4_2:24413991-24414010 | Msa0595350:intron | 30.0% |
| CTCCCACAAGTAAAAATTTA+TGG | - | chr4_2:24414019-24414038 | None:intergenic | 30.0% | |
| CATAGATTTATATCCTGATC+AGG | - | chr4_2:24414345-24414364 | None:intergenic | 30.0% | |
| !! | AGCTCAAATGTTTTTCAAAG+TGG | + | chr4_2:24414486-24414505 | Msa0595350:intron | 30.0% |
| !! | GCTCAAATGTTTTTCAAAGT+GGG | + | chr4_2:24414487-24414506 | Msa0595350:intron | 30.0% |
| GCTGTTCTTCAATATCTTTA+AGG | - | chr4_2:24414540-24414559 | None:intergenic | 30.0% | |
| ! | AAAGAAGCTATTTCAGGAAA+AGG | + | chr4_2:24414560-24414579 | Msa0595350:CDS | 30.0% |
| ! | AAGAAGCTATTTCAGGAAAA+GGG | + | chr4_2:24414561-24414580 | Msa0595350:CDS | 30.0% |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_2:24414569-24414588 | Msa0595350:CDS | 30.0% | |
| TACAAGATTACTCCAATATG+TGG | + | chr4_2:24414755-24414774 | Msa0595350:CDS | 30.0% | |
| TTGGGAAATTCATGTTTCAT+AGG | - | chr4_2:24414909-24414928 | None:intergenic | 30.0% | |
| TTCAAAGATGAGGCTAATTC+AGG | - | chr4_2:24413314-24413333 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_2:24413493-24413512 | Msa0595350:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_2:24413494-24413513 | Msa0595350:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_2:24413506-24413525 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_2:24413517-24413536 | Msa0595350:CDS | 35.0% | |
| ! | AATGTTTAAGCTTGCTCTCA+AGG | + | chr4_2:24413694-24413713 | Msa0595350:CDS | 35.0% |
| AAAACTGTGCATTTGATGTG+AGG | - | chr4_2:24413809-24413828 | None:intergenic | 35.0% | |
| ATTTATATCCTGATCAGGCA+CGG | - | chr4_2:24414340-24414359 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_2:24414554-24414573 | Msa0595350:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_2:24414674-24414693 | Msa0595350:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_2:24414722-24414741 | Msa0595350:CDS | 35.0% | |
| CAGGACAACGAAAAGATATT+GGG | - | chr4_2:24413036-24413055 | None:intergenic | 35.0% | |
| TTCAAAGATGAGGCTAATTC+AGG | - | chr4_2:24413314-24413333 | None:intergenic | 35.0% | |
| !! | TTGTTTTGCACCACTTGTTA+AGG | + | chr4_2:24413493-24413512 | Msa0595350:CDS | 35.0% |
| !! | TGTTTTGCACCACTTGTTAA+GGG | + | chr4_2:24413494-24413513 | Msa0595350:CDS | 35.0% |
| TGAAGAATTCCCTTAACAAG+TGG | - | chr4_2:24413506-24413525 | None:intergenic | 35.0% | |
| AATTCTTCATCCATGTTCTC+TGG | + | chr4_2:24413517-24413536 | Msa0595350:CDS | 35.0% | |
| ! | AATGTTTAAGCTTGCTCTCA+AGG | + | chr4_2:24413694-24413713 | Msa0595350:CDS | 35.0% |
| AAAACTGTGCATTTGATGTG+AGG | - | chr4_2:24413809-24413828 | None:intergenic | 35.0% | |
| ATTTATATCCTGATCAGGCA+CGG | - | chr4_2:24414340-24414359 | None:intergenic | 35.0% | |
| ! | AACAGCAAAGAAGCTATTTC+AGG | + | chr4_2:24414554-24414573 | Msa0595350:CDS | 35.0% |
| GTAATGATGACTCTGCATAA+TGG | + | chr4_2:24414674-24414693 | Msa0595350:CDS | 35.0% | |
| AAGAAACTCATATATGACGC+AGG | + | chr4_2:24414722-24414741 | Msa0595350:CDS | 35.0% | |
| GCTAATTCAGGAACAGTCAA+AGG | - | chr4_2:24413302-24413321 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | - | chr4_2:24413324-24413343 | None:intergenic | 40.0% | |
| TTCGCGAAAACAACAGTGAA+AGG | + | chr4_2:24413398-24413417 | Msa0595350:CDS | 40.0% | |
| ACAACAGTGAAAGGCAAAGA+AGG | + | chr4_2:24413407-24413426 | Msa0595350:CDS | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_2:24413525-24413544 | Msa0595350:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_2:24413555-24413574 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_2:24413553-24413572 | Msa0595350:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr4_2:24413586-24413605 | Msa0595350:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr4_2:24413587-24413606 | Msa0595350:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr4_2:24413588-24413607 | Msa0595350:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr4_2:24413589-24413608 | Msa0595350:CDS | 40.0% |
| ! | TTCGGAATCTTTGGTTGATG+TGG | + | chr4_2:24413739-24413758 | Msa0595350:CDS | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | + | chr4_2:24413820-24413839 | Msa0595350:CDS | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | + | chr4_2:24413826-24413845 | Msa0595350:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_2:24413914-24413933 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_2:24413913-24413932 | Msa0595350:CDS | 40.0% |
| ! | AAAGTGGGTTCTGCATGATT+GGG | + | chr4_2:24414502-24414521 | Msa0595350:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_2:24414651-24414670 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_2:24414652-24414671 | Msa0595350:CDS | 40.0% | |
| AGAGACTTGAAGCCACATAT+TGG | - | chr4_2:24414770-24414789 | None:intergenic | 40.0% | |
| CCAGGACAACGAAAAGATAT+TGG | - | chr4_2:24413037-24413056 | None:intergenic | 40.0% | |
| GCTAATTCAGGAACAGTCAA+AGG | - | chr4_2:24413302-24413321 | None:intergenic | 40.0% | |
| AGGGTGAAGTTTCAAAGATG+AGG | - | chr4_2:24413324-24413343 | None:intergenic | 40.0% | |
| TTCGCGAAAACAACAGTGAA+AGG | + | chr4_2:24413398-24413417 | Msa0595350:CDS | 40.0% | |
| ACAACAGTGAAAGGCAAAGA+AGG | + | chr4_2:24413407-24413426 | Msa0595350:CDS | 40.0% | |
| ATCCATGTTCTCTGGATATG+TGG | + | chr4_2:24413525-24413544 | Msa0595350:CDS | 40.0% | |
| CTCAGAGAACCATTTCTTAG+AGG | - | chr4_2:24413555-24413574 | None:intergenic | 40.0% | |
| ! | CTCTAAGAAATGGTTCTCTG+AGG | + | chr4_2:24413553-24413572 | Msa0595350:CDS | 40.0% |
| ! | TGCACTCTATGAAAGTGCAA+TGG | + | chr4_2:24413586-24413605 | Msa0595350:CDS | 40.0% |
| ! | GCACTCTATGAAAGTGCAAT+GGG | + | chr4_2:24413587-24413606 | Msa0595350:CDS | 40.0% |
| ! | CACTCTATGAAAGTGCAATG+GGG | + | chr4_2:24413588-24413607 | Msa0595350:CDS | 40.0% |
| ! | ACTCTATGAAAGTGCAATGG+GGG | + | chr4_2:24413589-24413608 | Msa0595350:CDS | 40.0% |
| ! | TTCGGAATCTTTGGTTGATG+TGG | + | chr4_2:24413739-24413758 | Msa0595350:CDS | 40.0% |
| !!! | CACAGTTTTAGATCAACCAC+AGG | + | chr4_2:24413820-24413839 | Msa0595350:CDS | 40.0% |
| TTTAGATCAACCACAGGTTG+TGG | + | chr4_2:24413826-24413845 | Msa0595350:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_2:24413914-24413933 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_2:24413913-24413932 | Msa0595350:CDS | 40.0% |
| ! | AAAGTGGGTTCTGCATGATT+GGG | + | chr4_2:24414502-24414521 | Msa0595350:intron | 40.0% |
| GTCAAAGTGCAATTGCAACT+CGG | - | chr4_2:24414651-24414670 | None:intergenic | 40.0% | |
| GTTGCAATTGCACTTTGACA+TGG | + | chr4_2:24414652-24414671 | Msa0595350:CDS | 40.0% | |
| AGAGACTTGAAGCCACATAT+TGG | - | chr4_2:24414770-24414789 | None:intergenic | 40.0% | |
| CTCAAATCAGCTGTGGAACT+TGG | + | chr4_2:24413245-24413264 | Msa0595350:CDS | 45.0% | |
| GTAGATGCAATCCACAAGCA+TGG | + | chr4_2:24413272-24413291 | Msa0595350:CDS | 45.0% | |
| TCAAAGGCTTTCCATGCTTG+TGG | - | chr4_2:24413286-24413305 | None:intergenic | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_2:24413361-24413380 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_2:24413461-24413480 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_2:24413464-24413483 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_2:24413461-24413480 | Msa0595350:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_2:24413530-24413549 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_2:24413543-24413562 | Msa0595350:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_2:24413559-24413578 | Msa0595350:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr4_2:24413678-24413697 | None:intergenic | 45.0% | |
| ATTCCGAACCCTCAAACACA+TGG | - | chr4_2:24413727-24413746 | None:intergenic | 45.0% | |
| GTTTGAGGGTTCGGAATCTT+TGG | + | chr4_2:24413730-24413749 | Msa0595350:CDS | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_2:24413743-24413762 | Msa0595350:CDS | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | - | chr4_2:24413839-24413858 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | + | chr4_2:24413839-24413858 | Msa0595350:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr4_2:24413910-24413929 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_2:24413911-24413930 | None:intergenic | 45.0% | |
| ATCCACTCACATGAGATTGG+AGG | - | chr4_2:24414317-24414336 | None:intergenic | 45.0% | |
| ! | CAAAGTGGGTTCTGCATGAT+TGG | + | chr4_2:24414501-24414520 | Msa0595350:intron | 45.0% |
| CTCAAATCAGCTGTGGAACT+TGG | + | chr4_2:24413245-24413264 | Msa0595350:CDS | 45.0% | |
| GTAGATGCAATCCACAAGCA+TGG | + | chr4_2:24413272-24413291 | Msa0595350:CDS | 45.0% | |
| TCAAAGGCTTTCCATGCTTG+TGG | - | chr4_2:24413286-24413305 | None:intergenic | 45.0% | |
| GCAAGCGCAAGAACCTATAT+AGG | - | chr4_2:24413361-24413380 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCTTTGAAGG+AGG | - | chr4_2:24413461-24413480 | None:intergenic | 45.0% |
| ! | CCACTGATGAGAAGCTTTGA+AGG | - | chr4_2:24413464-24413483 | None:intergenic | 45.0% |
| CCTTCAAAGCTTCTCATCAG+TGG | + | chr4_2:24413461-24413480 | Msa0595350:CDS | 45.0% | |
| TGCCACATATCCAGAGAACA+TGG | - | chr4_2:24413530-24413549 | None:intergenic | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_2:24413543-24413562 | Msa0595350:CDS | 45.0% |
| ! | GAAATGGTTCTCTGAGGAGA+AGG | + | chr4_2:24413559-24413578 | Msa0595350:CDS | 45.0% |
| CATTTGTGAATCAGCTGCCA+TGG | - | chr4_2:24413678-24413697 | None:intergenic | 45.0% | |
| ATTCCGAACCCTCAAACACA+TGG | - | chr4_2:24413727-24413746 | None:intergenic | 45.0% | |
| GTTTGAGGGTTCGGAATCTT+TGG | + | chr4_2:24413730-24413749 | Msa0595350:CDS | 45.0% | |
| ! | GAATCTTTGGTTGATGTGGC+AGG | + | chr4_2:24413743-24413762 | Msa0595350:CDS | 45.0% |
| GATAAGTTAGCCACAACCTG+TGG | - | chr4_2:24413839-24413858 | None:intergenic | 45.0% | |
| CAGGTTGTGGCTAACTTATC+TGG | + | chr4_2:24413839-24413858 | Msa0595350:CDS | 45.0% | |
| GTAAAACAGCATCTGCAGGA+GGG | - | chr4_2:24413910-24413929 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_2:24413911-24413930 | None:intergenic | 45.0% | |
| ATCCACTCACATGAGATTGG+AGG | - | chr4_2:24414317-24414336 | None:intergenic | 45.0% | |
| ! | CAAAGTGGGTTCTGCATGAT+TGG | + | chr4_2:24414501-24414520 | Msa0595350:intron | 45.0% |
| !! | TATATTTAAAAAACAATATT+GGG | - | chr4_2:24414927-24414946 | None:intergenic | 5.0% |
| !! | TTATATTTAAAAAACAATAT+TGG | - | chr4_2:24414928-24414947 | None:intergenic | 5.0% |
| !! | TATATTTAAAAAACAATATT+GGG | - | chr4_2:24414927-24414946 | None:intergenic | 5.0% |
| !! | TTATATTTAAAAAACAATAT+TGG | - | chr4_2:24414928-24414947 | None:intergenic | 5.0% |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr4_2:24413240-24413259 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr4_2:24413238-24413257 | Msa0595350:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_2:24413371-24413390 | Msa0595350:CDS | 50.0% |
| !! | TAGCTTGTTTCAAGGGGCCA+TGG | + | chr4_2:24413658-24413677 | Msa0595350:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_2:24413716-24413735 | Msa0595350:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+CGG | + | chr4_2:24413721-24413740 | Msa0595350:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_2:24413746-24413765 | Msa0595350:CDS | 50.0% |
| TGCCTCCAATCTCATGTGAG+TGG | + | chr4_2:24414312-24414331 | Msa0595350:intron | 50.0% | |
| CGGATCCACTCACATGAGAT+TGG | - | chr4_2:24414320-24414339 | None:intergenic | 50.0% | |
| !! | CACAGCTGATTTGAGTGCCA+TGG | - | chr4_2:24413240-24413259 | None:intergenic | 50.0% |
| CATGGCACTCAAATCAGCTG+TGG | + | chr4_2:24413238-24413257 | Msa0595350:CDS | 50.0% | |
| ! | TTGCGCTTGCTAACACACGA+TGG | + | chr4_2:24413371-24413390 | Msa0595350:CDS | 50.0% |
| !! | TAGCTTGTTTCAAGGGGCCA+TGG | + | chr4_2:24413658-24413677 | Msa0595350:CDS | 50.0% |
| GACTGCAGCCATGTGTTTGA+GGG | + | chr4_2:24413716-24413735 | Msa0595350:CDS | 50.0% | |
| CAGCCATGTGTTTGAGGGTT+CGG | + | chr4_2:24413721-24413740 | Msa0595350:CDS | 50.0% | |
| ! | TCTTTGGTTGATGTGGCAGG+TGG | + | chr4_2:24413746-24413765 | Msa0595350:CDS | 50.0% |
| TGCCTCCAATCTCATGTGAG+TGG | + | chr4_2:24414312-24414331 | Msa0595350:intron | 50.0% | |
| CGGATCCACTCACATGAGAT+TGG | - | chr4_2:24414320-24414339 | None:intergenic | 50.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_2:24413715-24413734 | Msa0595350:CDS | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | + | chr4_2:24413752-24413771 | Msa0595350:CDS | 55.0% | |
| GGACTGCAGCCATGTGTTTG+AGG | + | chr4_2:24413715-24413734 | Msa0595350:CDS | 55.0% | |
| GTTGATGTGGCAGGTGGAAC+TGG | + | chr4_2:24413752-24413771 | Msa0595350:CDS | 55.0% | |
| GAGTGGATCCGTGCCTGATC+AGG | + | chr4_2:24414329-24414348 | Msa0595350:intron | 60.0% | |
| GAGTGGATCCGTGCCTGATC+AGG | + | chr4_2:24414329-24414348 | Msa0595350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 24413035 | 24414957 | 24413035 | ID=Msa0595350;Name=Msa0595350 |
| chr4_2 | mRNA | 24413035 | 24414957 | 24413035 | ID=Msa0595350-mRNA-1;Parent=Msa0595350;Name=Msa0595350-mRNA-1;_AED=0.23;_eAED=0.23;_QI=114|1|1|1|1|1|2|149|362 |
| chr4_2 | exon | 24413035 | 24413934 | 24413035 | ID=Msa0595350-mRNA-1:exon:6579;Parent=Msa0595350-mRNA-1 |
| chr4_2 | exon | 24414506 | 24414957 | 24414506 | ID=Msa0595350-mRNA-1:exon:6580;Parent=Msa0595350-mRNA-1 |
| chr4_2 | five_prime_UTR | 24413035 | 24413148 | 24413035 | ID=Msa0595350-mRNA-1:five_prime_utr;Parent=Msa0595350-mRNA-1 |
| chr4_2 | CDS | 24413149 | 24413934 | 24413149 | ID=Msa0595350-mRNA-1:cds;Parent=Msa0595350-mRNA-1 |
| chr4_2 | CDS | 24414506 | 24414808 | 24414506 | ID=Msa0595350-mRNA-1:cds;Parent=Msa0595350-mRNA-1 |
| chr4_2 | three_prime_UTR | 24414809 | 24414957 | 24414809 | ID=Msa0595350-mRNA-1:three_prime_utr;Parent=Msa0595350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
