AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595400 MtrunA17_Chr4g0014681 91.892 333 27 0 1 333 31 363 0.0 609
Msa0595400 MtrunA17_Chr4g0014561 91.892 333 27 0 1 333 31 363 0.0 608
Msa0595400 MtrunA17_Chr4g0014641 89.189 333 36 0 1 333 31 363 0.0 593
Msa0595400 MtrunA17_Chr4g0046361 72.973 333 88 1 1 333 31 361 0.0 510
Msa0595400 MtrunA17_Chr4g0014661 75.676 333 75 1 1 333 31 357 1.29e-174 488
Msa0595400 MtrunA17_Chr4g0046341 75.150 334 82 1 1 333 31 364 7.04e-174 486
Msa0595400 MtrunA17_Chr4g0014591 75.375 333 76 1 1 333 31 357 1.99e-165 465
Msa0595400 MtrunA17_Chr4g0014601 74.153 236 55 1 1 236 31 260 1.86e-127 365
Msa0595400 MtrunA17_Chr5g0432251 49.851 335 160 5 1 333 31 359 4.90e-114 334
Msa0595400 MtrunA17_Chr5g0432301 50.599 334 157 5 1 332 32 359 4.10e-113 332
Msa0595400 MtrunA17_Chr7g0219141 47.147 333 170 4 1 333 31 357 2.20e-108 320
Msa0595400 MtrunA17_Chr5g0432241 48.657 335 164 5 1 333 32 360 1.64e-107 318
Msa0595400 MtrunA17_Chr1g0188391 48.512 336 165 6 1 333 31 361 1.79e-107 318
Msa0595400 MtrunA17_Chr7g0223231 47.734 331 161 4 1 331 30 348 9.81e-107 315
Msa0595400 MtrunA17_Chr7g0219161 48.758 322 157 6 1 321 31 345 1.93e-105 313
Msa0595400 MtrunA17_Chr7g0223241 49.547 331 155 4 1 331 30 348 3.93e-105 311
Msa0595400 MtrunA17_Chr5g0432261 46.847 333 145 3 1 333 27 327 7.42e-102 302
Msa0595400 MtrunA17_Chr4g0046531 50.751 333 155 4 1 332 31 355 4.47e-101 312
Msa0595400 MtrunA17_Chr4g0046531 49.701 334 159 4 1 333 393 718 1.63e-99 308
Msa0595400 MtrunA17_Chr4g0040621 46.108 334 171 3 1 333 44 369 2.63e-100 300
Msa0595400 MtrunA17_Chr5g0432211 45.075 335 162 6 1 333 31 345 1.48e-96 290
Msa0595400 MtrunA17_Chr1g0188371 45.570 316 163 5 1 313 31 340 8.30e-86 263
Msa0595400 MtrunA17_Chr3g0121301 37.273 330 192 8 3 329 40 357 1.22e-60 198
Msa0595400 MtrunA17_Chr4g0021981 35.714 336 202 8 2 333 43 368 2.74e-57 189
Msa0595400 MtrunA17_Chr4g0022021 35.608 337 203 8 1 333 42 368 9.07e-56 185
Msa0595400 MtrunA17_Chr7g0218301 33.431 341 206 10 2 331 40 370 4.34e-49 168
Msa0595400 MtrunA17_Chr7g0218181 31.778 343 206 10 2 332 40 366 1.72e-48 166
Msa0595400 MtrunA17_Chr7g0218131 32.840 338 212 9 2 332 40 369 3.56e-48 166
Msa0595400 MtrunA17_Chr7g0218271 32.845 341 208 11 2 331 40 370 5.26e-48 165
Msa0595400 MtrunA17_Chr7g0219171 55.224 134 59 1 200 333 116 248 4.05e-47 159
Msa0595400 MtrunA17_Chr7g0219171 46.739 92 42 1 1 92 31 115 1.73e-18 83.6
Msa0595400 MtrunA17_Chr1g0163601 31.692 325 208 7 3 320 38 355 1.75e-46 161
Msa0595400 MtrunA17_Chr7g0218261 32.635 334 212 8 2 331 39 363 7.33e-46 159
Msa0595400 MtrunA17_Chr1g0200491 32.308 325 206 7 3 320 41 358 1.75e-45 159
Msa0595400 MtrunA17_Chr5g0448091 34.731 334 197 13 1 325 33 354 2.33e-45 158
Msa0595400 MtrunA17_Chr1g0163611 31.765 340 214 10 3 332 38 369 3.72e-45 157
Msa0595400 MtrunA17_Chr2g0307521 32.537 335 211 9 2 331 34 358 5.39e-45 157
Msa0595400 MtrunA17_Chr8g0367501 33.728 338 208 10 1 331 32 360 2.84e-44 156
Msa0595400 MtrunA17_Chr7g0218211 32.836 335 211 8 2 331 39 364 4.54e-44 155
Msa0595400 MtrunA17_Chr8g0367491 32.432 333 209 10 1 325 45 369 4.22e-43 152
Msa0595400 MtrunA17_Chr8g0367441 33.645 321 198 9 1 314 46 358 4.79e-43 152
Msa0595400 MtrunA17_Chr8g0367451 33.125 320 201 8 1 314 45 357 4.84e-43 152
Msa0595400 MtrunA17_Chr7g0276411 32.822 326 202 11 1 318 31 347 2.95e-42 150
Msa0595400 MtrunA17_Chr3g0128011 32.716 324 205 8 1 319 88 403 5.71e-41 148
Msa0595400 MtrunA17_Chr7g0276401 32.831 332 199 9 1 323 47 363 6.55e-41 147
Msa0595400 MtrunA17_Chr1g0163621 31.650 297 194 6 26 320 80 369 1.09e-40 146
Msa0595400 MtrunA17_Chr3g0085211 33.127 323 204 8 2 320 42 356 1.01e-39 143
Msa0595400 MtrunA17_Chr2g0314271 31.454 337 212 8 1 330 27 351 8.91e-39 140
Msa0595400 MtrunA17_Chr8g0345851 34.457 267 164 6 58 320 18 277 1.32e-38 138
Msa0595400 MtrunA17_Chr3g0085201 31.579 323 209 8 2 320 29 343 3.64e-38 139
Msa0595400 MtrunA17_Chr8g0367381 32.353 306 175 10 1 300 46 325 2.67e-36 133
Msa0595400 MtrunA17_Chr4g0014611 78.000 100 22 0 234 333 8 107 3.95e-36 126
Msa0595400 MtrunA17_Chr3g0130011 29.794 339 218 10 2 332 31 357 9.97e-35 130
Msa0595400 MtrunA17_Chr3g0130061 28.274 336 223 9 2 330 31 355 1.26e-31 121
Msa0595400 MtrunA17_Chr4g0014671 75.238 105 26 0 229 333 30 134 2.93e-28 106
Msa0595400 MtrunA17_Chr4g0014621 77.273 66 15 0 268 333 197 262 6.59e-21 90.5
Msa0595400 MtrunA17_Chr8g0367461 42.593 108 57 3 220 325 1 105 2.24e-19 82.4
Msa0595400 MtrunA17_Chr6g0482291 32.468 154 92 3 166 318 19 161 2.40e-19 84.0
Msa0595400 MtrunA17_Chr4g0014551 97.727 44 1 0 290 333 1 44 1.59e-15 69.7
Msa0595400 MtrunA17_Chr8g0367401 36.036 111 69 1 123 233 2 110 1.68e-15 72.8
Msa0595400 MtrunA17_Chr1g0170941 46.970 66 35 0 166 231 11 76 3.92e-14 67.0
Msa0595400 MtrunA17_Chr4g0011691 41.667 96 52 3 235 329 140 232 2.53e-13 68.6
Msa0595400 MtrunA17_Chr8g0367391 35.345 116 68 4 206 318 8 119 8.97e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595400 AT5G54160.1 33.746 323 203 7 1 320 34 348 2.24e-46 161
Msa0595400 AT1G51990.2 33.648 318 195 10 21 333 56 362 3.53e-44 155
Msa0595400 AT4G35160.1 34.384 349 198 13 2 332 45 380 1.32e-43 154
Msa0595400 AT1G77520.1 32.571 350 205 10 1 332 44 380 3.88e-43 153
Msa0595400 AT4G35150.1 31.287 342 175 11 2 332 31 323 6.99e-43 151
Msa0595400 AT1G51990.1 33.645 321 191 11 21 333 56 362 2.22e-42 150
Msa0595400 AT3G53140.1 31.778 343 208 12 1 330 27 356 4.33e-39 142
Msa0595400 AT1G33030.1 31.138 334 207 11 1 323 21 342 8.63e-39 141
Msa0595400 AT1G77530.1 33.333 345 209 10 1 332 44 380 7.56e-36 134
Msa0595400 AT5G53810.1 30.725 345 219 9 1 332 40 377 9.08e-36 133
Msa0595400 AT1G63140.2 31.884 345 214 11 1 332 44 380 1.56e-34 130
Msa0595400 AT1G63140.4 31.884 345 214 11 1 332 64 400 1.86e-34 130
Msa0595400 AT1G76790.1 30.321 343 200 12 1 325 30 351 6.24e-27 109
Msa0595400 AT1G62900.1 36.458 192 117 3 143 332 16 204 5.32e-26 103
Msa0595400 AT1G21130.1 27.976 336 211 11 1 320 40 360 8.73e-26 106
Msa0595400 AT1G21100.1 27.976 336 211 11 1 320 40 360 6.41e-25 103
Msa0595400 AT1G21110.1 27.492 331 209 11 1 315 40 355 1.67e-24 102
Msa0595400 AT1G21120.1 27.083 336 214 11 1 320 40 360 1.79e-23 100
Msa0595400 AT5G37170.2 31.959 194 126 4 142 332 43 233 2.24e-23 97.1
Msa0595400 AT5G37170.1 31.959 194 126 4 142 332 143 333 3.97e-23 98.2
Msa0595400 AT1G21120.2 27.083 336 214 11 1 320 88 408 6.13e-23 99.0
Msa0595400 AT5G37170.3 34.286 175 106 5 164 332 14 185 1.70e-22 93.2
Msa0595400 AT1G33030.2 30.165 242 150 10 1 233 21 252 8.21e-18 82.4
Msa0595400 AT1G33030.3 30.165 242 150 10 1 233 21 252 1.17e-17 82.0
Msa0595400 AT1G63140.1 29.918 244 155 8 1 233 64 302 4.80e-16 77.8

Find 57 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTTCTCCAATATCTTTA+AGG 0.188779 4_2:-24453153 None:intergenic
GCGCAAGAGGCGAGTCATTT+TGG 0.211023 4_2:+24452324 Msa0595400:CDS
ATGATGATGACTTTGTTAAA+TGG 0.247172 4_2:+24453290 Msa0595400:CDS
TGAATTGTCCTTAAAGATAT+TGG 0.269123 4_2:+24453145 Msa0595400:CDS
TAAAACAAATGAGTTGAAAT+TGG 0.270517 4_2:+24453256 Msa0595400:CDS
CTCAGTGAGCCATTTCTTAG+AGG 0.316815 4_2:-24452276 None:intergenic
TAGCCATGTGTTTGAAGGTT+TGG 0.322024 4_2:+24452445 Msa0595400:CDS
TACAGGACACTAACTTTAGA+AGG 0.365683 4_2:-24452062 None:intergenic
GCTAATTCAGTAAGAGTCAT+TGG 0.368956 4_2:-24452020 None:intergenic
AAGAAAGAGAGAAGAAAGAA+TGG 0.382447 4_2:+24453315 Msa0595400:CDS
GATAGACTTGAAGCCGCATA+TGG 0.398440 4_2:-24453384 None:intergenic
AACGAAAATTTGAAATTTGT+TGG 0.401585 4_2:+24452587 Msa0595400:CDS
TGTTTGTCACCATTTGTTAC+CGG 0.405515 4_2:+24452218 Msa0595400:CDS
TGAGGTGAGGAAAAGTTTCA+TGG 0.410589 4_2:-24452517 None:intergenic
GAGTATAGCCATGTGTTTGA+AGG 0.421443 4_2:+24452440 Msa0595400:CDS
GTTTGAAGGTTTGGAGTCTC+TGG 0.426025 4_2:+24452454 Msa0595400:CDS
CCACTGATGAGAAGCATTGA+AGG 0.442792 4_2:-24452185 None:intergenic
TGTGGTACTCCTCTAAGAAA+TGG 0.454917 4_2:+24452267 Msa0595400:CDS
GTTGATGTTGGAGGTGGCAC+AGG 0.461040 4_2:+24452476 Msa0595400:CDS
ATTTCAGGAAAAGGGACAAA+AGG 0.472680 4_2:+24453185 Msa0595400:CDS
AGAAAGAGAGAAGAAAGAAT+GGG 0.494469 4_2:+24453316 Msa0595400:CDS
TTGGAGTCTCTGGTTGATGT+TGG 0.495110 4_2:+24452464 Msa0595400:CDS
GAAAATTTGAAATTTGTTGG+TGG 0.495217 4_2:+24452590 Msa0595400:CDS
GGTCAAATACTATGCATTTG+AGG 0.496242 4_2:-24452535 None:intergenic
GAGTCTCTGGTTGATGTTGG+AGG 0.503583 4_2:+24452467 Msa0595400:CDS
CTCAAATCAGCTGTGGAACT+AGG 0.506689 4_2:+24451966 Msa0595400:CDS
CACAGCTGATTTGAGTGCCA+TGG 0.511000 4_2:-24451958 None:intergenic
GATGTTGGAGGTGGCACAGG+AGG 0.520874 4_2:+24452479 Msa0595400:CDS
TGAAGCGATCCGGTAACAAA+TGG 0.526003 4_2:-24452227 None:intergenic
AGTCTCTTTGAGAGCGCAAG+AGG 0.547483 4_2:+24452311 Msa0595400:CDS
ACGACATGGATGAAGCGATC+CGG 0.554100 4_2:-24452237 None:intergenic
TTGAGTAAAACAGCATCTGC+AGG 0.557051 4_2:-24452635 None:intergenic
GCAAGCGCAAGAGACGATAC+AGG 0.558531 4_2:-24452079 None:intergenic
AATCTTATAGCTGCTGAAGC+CGG 0.565225 4_2:-24453357 None:intergenic
CCTTCAATGCTTCTCATCAG+TGG 0.573536 4_2:+24452185 Msa0595400:CDS
GATTTGAGAATCAGCTGCCA+TGG 0.583476 4_2:-24452399 None:intergenic
TCTCTGGTTGATGTTGGAGG+TGG 0.586831 4_2:+24452470 Msa0595400:CDS
GAGAAACTCATATTTGACTC+CGG 0.588298 4_2:+24453338 Msa0595400:CDS
TACCACATGTTGAGACGACA+TGG 0.595315 4_2:-24452251 None:intergenic
ATCCATGTCGTCTCAACATG+TGG 0.596571 4_2:+24452249 Msa0595400:CDS
GAGTATGTTTCAAGATGCCA+TGG 0.599550 4_2:+24452382 Msa0595400:CDS
ATAGACTTGAAGCCGCATAT+GGG 0.603518 4_2:-24453383 None:intergenic
TTGCGCTTGCTAACACACAA+TGG 0.607728 4_2:+24452092 Msa0595400:CDS
AATACTATGCATTTGAGGTG+AGG 0.609052 4_2:-24452530 None:intergenic
GGACACTAACTTTAGAAGGG+TGG 0.621869 4_2:-24452058 None:intergenic
ACACTGATGAATGACAAAGA+AGG 0.622288 4_2:+24452131 Msa0595400:CDS
GAAATGGCTCACTGAGGACA+AGG 0.624424 4_2:+24452283 Msa0595400:CDS
AGTAAAACAGCATCTGCAGG+AGG 0.624714 4_2:-24452632 None:intergenic
AGGAAAAGGGACAAAAGGAA+AGG 0.628316 4_2:+24453190 Msa0595400:CDS
CATGGCACTCAAATCAGCTG+TGG 0.632130 4_2:+24451959 None:intergenic
GTAGATGCAATCCACAACCA+TGG 0.642372 4_2:+24451993 Msa0595400:CDS
ACAGGACACTAACTTTAGAA+GGG 0.644029 4_2:-24452061 None:intergenic
CTGATGAGAAGCATTGAAGG+AGG 0.666811 4_2:-24452182 None:intergenic
TATAAGATTACACCCATATG+CGG 0.675606 4_2:+24453371 Msa0595400:CDS
ACTCCAAACCTTCAAACACA+TGG 0.677292 4_2:-24452448 None:intergenic
GTAAAACAGCATCTGCAGGA+GGG 0.681270 4_2:-24452631 None:intergenic
CTCTAAGAAATGGCTCACTG+AGG 0.732533 4_2:+24452277 Msa0595400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTAAAGATATATTTTTTT+GGG + chr4_2:24452681-24452700 Msa0595400:intron 10.0%
!!! AGTTAAAGATATATTTTTTT+GGG + chr4_2:24452681-24452700 Msa0595400:intron 10.0%
!!! GAGTTAAAGATATATTTTTT+TGG + chr4_2:24452680-24452699 Msa0595400:intron 15.0%
!!! GATAAAATATTTTTTTACAG+TGG + chr4_2:24453102-24453121 Msa0595400:intron 15.0%
!!! GAGTTAAAGATATATTTTTT+TGG + chr4_2:24452680-24452699 Msa0595400:intron 15.0%
!!! GATAAAATATTTTTTTACAG+TGG + chr4_2:24453102-24453121 Msa0595400:intron 15.0%
!!! AACGAAAATTTGAAATTTGT+TGG + chr4_2:24452587-24452606 Msa0595400:CDS 20.0%
!! TGTTCATTATCTTATATCAA+CGG - chr4_2:24452919-24452938 None:intergenic 20.0%
!!! GAGTAATTTTCTTATGTTAT+TGG + chr4_2:24452955-24452974 Msa0595400:intron 20.0%
!! CTAATTAATCTTTGCAATAA+AGG + chr4_2:24453008-24453027 Msa0595400:intron 20.0%
!!! TAAAACAAATGAGTTGAAAT+TGG + chr4_2:24453256-24453275 Msa0595400:CDS 20.0%
!!! AACGAAAATTTGAAATTTGT+TGG + chr4_2:24452587-24452606 Msa0595400:CDS 20.0%
!! TGTTCATTATCTTATATCAA+CGG - chr4_2:24452919-24452938 None:intergenic 20.0%
!!! GAGTAATTTTCTTATGTTAT+TGG + chr4_2:24452955-24452974 Msa0595400:intron 20.0%
!! CTAATTAATCTTTGCAATAA+AGG + chr4_2:24453008-24453027 Msa0595400:intron 20.0%
!!! TAAAACAAATGAGTTGAAAT+TGG + chr4_2:24453256-24453275 Msa0595400:CDS 20.0%
!!! GAAAATTTGAAATTTGTTGG+TGG + chr4_2:24452590-24452609 Msa0595400:CDS 25.0%
! TAATTAGTCATCAACTAAAC+TGG - chr4_2:24452995-24453014 None:intergenic 25.0%
! TGAATTGTCCTTAAAGATAT+TGG + chr4_2:24453145-24453164 Msa0595400:CDS 25.0%
!! AAAAAAGCTATTTCAGGAAA+AGG + chr4_2:24453176-24453195 Msa0595400:CDS 25.0%
!! AAAAAGCTATTTCAGGAAAA+GGG + chr4_2:24453177-24453196 Msa0595400:CDS 25.0%
!! ATGATGATGACTTTGTTAAA+TGG + chr4_2:24453290-24453309 Msa0595400:CDS 25.0%
!!! GAAAATTTGAAATTTGTTGG+TGG + chr4_2:24452590-24452609 Msa0595400:CDS 25.0%
! TAATTAGTCATCAACTAAAC+TGG - chr4_2:24452995-24453014 None:intergenic 25.0%
! TGAATTGTCCTTAAAGATAT+TGG + chr4_2:24453145-24453164 Msa0595400:CDS 25.0%
!! AAAAAAGCTATTTCAGGAAA+AGG + chr4_2:24453176-24453195 Msa0595400:CDS 25.0%
!! AAAAAGCTATTTCAGGAAAA+GGG + chr4_2:24453177-24453196 Msa0595400:CDS 25.0%
!! ATGATGATGACTTTGTTAAA+TGG + chr4_2:24453290-24453309 Msa0595400:CDS 25.0%
!!! TGTTTTTTACAACTTGTGGT+TGG - chr4_2:24452559-24452578 None:intergenic 30.0%
!!! GACATGTTTTTTACAACTTG+TGG - chr4_2:24452563-24452582 None:intergenic 30.0%
CAAGTTGTAAAAAACATGTC+TGG + chr4_2:24452563-24452582 Msa0595400:CDS 30.0%
ACCGATCTTAAAATTGTCAA+CGG + chr4_2:24452852-24452871 Msa0595400:intron 30.0%
! AACTGCAAAAAAGCTATTTC+AGG + chr4_2:24453170-24453189 Msa0595400:CDS 30.0%
AAGAAAGAGAGAAGAAAGAA+TGG + chr4_2:24453315-24453334 Msa0595400:CDS 30.0%
AGAAAGAGAGAAGAAAGAAT+GGG + chr4_2:24453316-24453335 Msa0595400:CDS 30.0%
TATAAGATTACACCCATATG+CGG + chr4_2:24453371-24453390 Msa0595400:CDS 30.0%
!!! TGTTTTTTACAACTTGTGGT+TGG - chr4_2:24452559-24452578 None:intergenic 30.0%
!!! GACATGTTTTTTACAACTTG+TGG - chr4_2:24452563-24452582 None:intergenic 30.0%
CAAGTTGTAAAAAACATGTC+TGG + chr4_2:24452563-24452582 Msa0595400:CDS 30.0%
ACCGATCTTAAAATTGTCAA+CGG + chr4_2:24452852-24452871 Msa0595400:intron 30.0%
! AACTGCAAAAAAGCTATTTC+AGG + chr4_2:24453170-24453189 Msa0595400:CDS 30.0%
AAGAAAGAGAGAAGAAAGAA+TGG + chr4_2:24453315-24453334 Msa0595400:CDS 30.0%
AGAAAGAGAGAAGAAAGAAT+GGG + chr4_2:24453316-24453335 Msa0595400:CDS 30.0%
TATAAGATTACACCCATATG+CGG + chr4_2:24453371-24453390 Msa0595400:CDS 30.0%
!!! TAAGAGTCATTGGTTTTCCA+TGG - chr4_2:24452013-24452032 None:intergenic 35.0%
GCTAATTCAGTAAGAGTCAT+TGG - chr4_2:24452023-24452042 None:intergenic 35.0%
! ACAGGACACTAACTTTAGAA+GGG - chr4_2:24452064-24452083 None:intergenic 35.0%
TACAGGACACTAACTTTAGA+AGG - chr4_2:24452065-24452084 None:intergenic 35.0%
ACACTGATGAATGACAAAGA+AGG + chr4_2:24452131-24452150 Msa0595400:CDS 35.0%
! TGTTTGTCACCATTTGTTAC+CGG + chr4_2:24452218-24452237 Msa0595400:CDS 35.0%
! AATACTATGCATTTGAGGTG+AGG - chr4_2:24452533-24452552 None:intergenic 35.0%
GGTCAAATACTATGCATTTG+AGG - chr4_2:24452538-24452557 None:intergenic 35.0%
!!! GCCGTTGACAATTTTAAGAT+CGG - chr4_2:24452856-24452875 None:intergenic 35.0%
!! TACAGTGGATTTTGCATGAT+TGG + chr4_2:24453117-24453136 Msa0595400:intron 35.0%
GCAGTTCTCCAATATCTTTA+AGG - chr4_2:24453156-24453175 None:intergenic 35.0%
ATTTCAGGAAAAGGGACAAA+AGG + chr4_2:24453185-24453204 Msa0595400:CDS 35.0%
GAGAAACTCATATTTGACTC+CGG + chr4_2:24453338-24453357 Msa0595400:CDS 35.0%
!!! TAAGAGTCATTGGTTTTCCA+TGG - chr4_2:24452013-24452032 None:intergenic 35.0%
GCTAATTCAGTAAGAGTCAT+TGG - chr4_2:24452023-24452042 None:intergenic 35.0%
! ACAGGACACTAACTTTAGAA+GGG - chr4_2:24452064-24452083 None:intergenic 35.0%
TACAGGACACTAACTTTAGA+AGG - chr4_2:24452065-24452084 None:intergenic 35.0%
ACACTGATGAATGACAAAGA+AGG + chr4_2:24452131-24452150 Msa0595400:CDS 35.0%
! TGTTTGTCACCATTTGTTAC+CGG + chr4_2:24452218-24452237 Msa0595400:CDS 35.0%
! AATACTATGCATTTGAGGTG+AGG - chr4_2:24452533-24452552 None:intergenic 35.0%
GGTCAAATACTATGCATTTG+AGG - chr4_2:24452538-24452557 None:intergenic 35.0%
!!! GCCGTTGACAATTTTAAGAT+CGG - chr4_2:24452856-24452875 None:intergenic 35.0%
!! TACAGTGGATTTTGCATGAT+TGG + chr4_2:24453117-24453136 Msa0595400:intron 35.0%
GCAGTTCTCCAATATCTTTA+AGG - chr4_2:24453156-24453175 None:intergenic 35.0%
ATTTCAGGAAAAGGGACAAA+AGG + chr4_2:24453185-24453204 Msa0595400:CDS 35.0%
GAGAAACTCATATTTGACTC+CGG + chr4_2:24453338-24453357 Msa0595400:CDS 35.0%
!!! TCATTGGTTTTCCATGGTTG+TGG - chr4_2:24452007-24452026 None:intergenic 40.0%
! TGTGGTACTCCTCTAAGAAA+TGG + chr4_2:24452267-24452286 Msa0595400:CDS 40.0%
GAGTATGTTTCAAGATGCCA+TGG + chr4_2:24452382-24452401 Msa0595400:CDS 40.0%
GAGTATAGCCATGTGTTTGA+AGG + chr4_2:24452440-24452459 Msa0595400:CDS 40.0%
TAGCCATGTGTTTGAAGGTT+TGG + chr4_2:24452445-24452464 Msa0595400:CDS 40.0%
ACTCCAAACCTTCAAACACA+TGG - chr4_2:24452451-24452470 None:intergenic 40.0%
TGAGGTGAGGAAAAGTTTCA+TGG - chr4_2:24452520-24452539 None:intergenic 40.0%
TTGAGTAAAACAGCATCTGC+AGG - chr4_2:24452638-24452657 None:intergenic 40.0%
!!! TGCAGATGCTGTTTTACTCA+AGG + chr4_2:24452637-24452656 Msa0595400:CDS 40.0%
! GGGAACGAGCAATTTTACAA+GGG - chr4_2:24452734-24452753 None:intergenic 40.0%
! AGGGAACGAGCAATTTTACA+AGG - chr4_2:24452735-24452754 None:intergenic 40.0%
GTTAACTGCCGCTGATATAA+GGG - chr4_2:24452754-24452773 None:intergenic 40.0%
AGTTAACTGCCGCTGATATA+AGG - chr4_2:24452755-24452774 None:intergenic 40.0%
!! TTCGATCATAAAAGCGTCAG+TGG - chr4_2:24452808-24452827 None:intergenic 40.0%
AGGAAAAGGGACAAAAGGAA+AGG + chr4_2:24453190-24453209 Msa0595400:CDS 40.0%
AATCTTATAGCTGCTGAAGC+CGG - chr4_2:24453360-24453379 None:intergenic 40.0%
ATAGACTTGAAGCCGCATAT+GGG - chr4_2:24453386-24453405 None:intergenic 40.0%
!!! TCATTGGTTTTCCATGGTTG+TGG - chr4_2:24452007-24452026 None:intergenic 40.0%
! TGTGGTACTCCTCTAAGAAA+TGG + chr4_2:24452267-24452286 Msa0595400:CDS 40.0%
GAGTATGTTTCAAGATGCCA+TGG + chr4_2:24452382-24452401 Msa0595400:CDS 40.0%
GAGTATAGCCATGTGTTTGA+AGG + chr4_2:24452440-24452459 Msa0595400:CDS 40.0%
TAGCCATGTGTTTGAAGGTT+TGG + chr4_2:24452445-24452464 Msa0595400:CDS 40.0%
ACTCCAAACCTTCAAACACA+TGG - chr4_2:24452451-24452470 None:intergenic 40.0%
TGAGGTGAGGAAAAGTTTCA+TGG - chr4_2:24452520-24452539 None:intergenic 40.0%
TTGAGTAAAACAGCATCTGC+AGG - chr4_2:24452638-24452657 None:intergenic 40.0%
!!! TGCAGATGCTGTTTTACTCA+AGG + chr4_2:24452637-24452656 Msa0595400:CDS 40.0%
! GGGAACGAGCAATTTTACAA+GGG - chr4_2:24452734-24452753 None:intergenic 40.0%
! AGGGAACGAGCAATTTTACA+AGG - chr4_2:24452735-24452754 None:intergenic 40.0%
GTTAACTGCCGCTGATATAA+GGG - chr4_2:24452754-24452773 None:intergenic 40.0%
AGTTAACTGCCGCTGATATA+AGG - chr4_2:24452755-24452774 None:intergenic 40.0%
!! TTCGATCATAAAAGCGTCAG+TGG - chr4_2:24452808-24452827 None:intergenic 40.0%
AGGAAAAGGGACAAAAGGAA+AGG + chr4_2:24453190-24453209 Msa0595400:CDS 40.0%
AATCTTATAGCTGCTGAAGC+CGG - chr4_2:24453360-24453379 None:intergenic 40.0%
ATAGACTTGAAGCCGCATAT+GGG - chr4_2:24453386-24453405 None:intergenic 40.0%
CTCAAATCAGCTGTGGAACT+AGG + chr4_2:24451966-24451985 Msa0595400:CDS 45.0%
GTAGATGCAATCCACAACCA+TGG + chr4_2:24451993-24452012 Msa0595400:CDS 45.0%
! GGACACTAACTTTAGAAGGG+TGG - chr4_2:24452061-24452080 None:intergenic 45.0%
! TTGCGCTTGCTAACACACAA+TGG + chr4_2:24452092-24452111 Msa0595400:CDS 45.0%
!! CTGATGAGAAGCATTGAAGG+AGG - chr4_2:24452185-24452204 None:intergenic 45.0%
!! CCACTGATGAGAAGCATTGA+AGG - chr4_2:24452188-24452207 None:intergenic 45.0%
CCTTCAATGCTTCTCATCAG+TGG + chr4_2:24452185-24452204 Msa0595400:CDS 45.0%
TGAAGCGATCCGGTAACAAA+TGG - chr4_2:24452230-24452249 None:intergenic 45.0%
ATCCATGTCGTCTCAACATG+TGG + chr4_2:24452249-24452268 Msa0595400:CDS 45.0%
TACCACATGTTGAGACGACA+TGG - chr4_2:24452254-24452273 None:intergenic 45.0%
CTCAGTGAGCCATTTCTTAG+AGG - chr4_2:24452279-24452298 None:intergenic 45.0%
! CTCTAAGAAATGGCTCACTG+AGG + chr4_2:24452277-24452296 Msa0595400:CDS 45.0%
GATTTGAGAATCAGCTGCCA+TGG - chr4_2:24452402-24452421 None:intergenic 45.0%
! GTTTGAAGGTTTGGAGTCTC+TGG + chr4_2:24452454-24452473 Msa0595400:CDS 45.0%
! TTGGAGTCTCTGGTTGATGT+TGG + chr4_2:24452464-24452483 Msa0595400:CDS 45.0%
GTAAAACAGCATCTGCAGGA+GGG - chr4_2:24452634-24452653 None:intergenic 45.0%
AGTAAAACAGCATCTGCAGG+AGG - chr4_2:24452635-24452654 None:intergenic 45.0%
TGCTCGTTCCCTTATATCAG+CGG + chr4_2:24452743-24452762 Msa0595400:intron 45.0%
TATCGCTGAAAAATGCCGAG+CGG - chr4_2:24452779-24452798 None:intergenic 45.0%
GATAGACTTGAAGCCGCATA+TGG - chr4_2:24453387-24453406 None:intergenic 45.0%
CTCAAATCAGCTGTGGAACT+AGG + chr4_2:24451966-24451985 Msa0595400:CDS 45.0%
GTAGATGCAATCCACAACCA+TGG + chr4_2:24451993-24452012 Msa0595400:CDS 45.0%
! GGACACTAACTTTAGAAGGG+TGG - chr4_2:24452061-24452080 None:intergenic 45.0%
! TTGCGCTTGCTAACACACAA+TGG + chr4_2:24452092-24452111 Msa0595400:CDS 45.0%
!! CTGATGAGAAGCATTGAAGG+AGG - chr4_2:24452185-24452204 None:intergenic 45.0%
!! CCACTGATGAGAAGCATTGA+AGG - chr4_2:24452188-24452207 None:intergenic 45.0%
CCTTCAATGCTTCTCATCAG+TGG + chr4_2:24452185-24452204 Msa0595400:CDS 45.0%
TGAAGCGATCCGGTAACAAA+TGG - chr4_2:24452230-24452249 None:intergenic 45.0%
ATCCATGTCGTCTCAACATG+TGG + chr4_2:24452249-24452268 Msa0595400:CDS 45.0%
TACCACATGTTGAGACGACA+TGG - chr4_2:24452254-24452273 None:intergenic 45.0%
CTCAGTGAGCCATTTCTTAG+AGG - chr4_2:24452279-24452298 None:intergenic 45.0%
! CTCTAAGAAATGGCTCACTG+AGG + chr4_2:24452277-24452296 Msa0595400:CDS 45.0%
GATTTGAGAATCAGCTGCCA+TGG - chr4_2:24452402-24452421 None:intergenic 45.0%
! GTTTGAAGGTTTGGAGTCTC+TGG + chr4_2:24452454-24452473 Msa0595400:CDS 45.0%
! TTGGAGTCTCTGGTTGATGT+TGG + chr4_2:24452464-24452483 Msa0595400:CDS 45.0%
GTAAAACAGCATCTGCAGGA+GGG - chr4_2:24452634-24452653 None:intergenic 45.0%
AGTAAAACAGCATCTGCAGG+AGG - chr4_2:24452635-24452654 None:intergenic 45.0%
TGCTCGTTCCCTTATATCAG+CGG + chr4_2:24452743-24452762 Msa0595400:intron 45.0%
TATCGCTGAAAAATGCCGAG+CGG - chr4_2:24452779-24452798 None:intergenic 45.0%
GATAGACTTGAAGCCGCATA+TGG - chr4_2:24453387-24453406 None:intergenic 45.0%
ACGACATGGATGAAGCGATC+CGG - chr4_2:24452240-24452259 None:intergenic 50.0%
GAAATGGCTCACTGAGGACA+AGG + chr4_2:24452283-24452302 Msa0595400:CDS 50.0%
! AGTCTCTTTGAGAGCGCAAG+AGG + chr4_2:24452311-24452330 Msa0595400:CDS 50.0%
!! CGCAAGAGGCGAGTCATTTT+GGG + chr4_2:24452325-24452344 Msa0595400:CDS 50.0%
! GAGTCTCTGGTTGATGTTGG+AGG + chr4_2:24452467-24452486 Msa0595400:CDS 50.0%
! TCTCTGGTTGATGTTGGAGG+TGG + chr4_2:24452470-24452489 Msa0595400:CDS 50.0%
TGCCACTGAAAAATGCCGAG+CGG + chr4_2:24452883-24452902 Msa0595400:intron 50.0%
ACGACATGGATGAAGCGATC+CGG - chr4_2:24452240-24452259 None:intergenic 50.0%
GAAATGGCTCACTGAGGACA+AGG + chr4_2:24452283-24452302 Msa0595400:CDS 50.0%
! AGTCTCTTTGAGAGCGCAAG+AGG + chr4_2:24452311-24452330 Msa0595400:CDS 50.0%
!! CGCAAGAGGCGAGTCATTTT+GGG + chr4_2:24452325-24452344 Msa0595400:CDS 50.0%
! GAGTCTCTGGTTGATGTTGG+AGG + chr4_2:24452467-24452486 Msa0595400:CDS 50.0%
! TCTCTGGTTGATGTTGGAGG+TGG + chr4_2:24452470-24452489 Msa0595400:CDS 50.0%
TGCCACTGAAAAATGCCGAG+CGG + chr4_2:24452883-24452902 Msa0595400:intron 50.0%
GCAAGCGCAAGAGACGATAC+AGG - chr4_2:24452082-24452101 None:intergenic 55.0%
! GCGCAAGAGGCGAGTCATTT+TGG + chr4_2:24452324-24452343 Msa0595400:CDS 55.0%
GTTGATGTTGGAGGTGGCAC+AGG + chr4_2:24452476-24452495 Msa0595400:CDS 55.0%
AGCGGCAGTTAACTACCGCT+CGG + chr4_2:24452761-24452780 Msa0595400:intron 55.0%
!! TGCCGCTCGGCATTTTTCAG+TGG - chr4_2:24452888-24452907 None:intergenic 55.0%
AACGGCAGTTAACTGCCGCT+CGG - chr4_2:24452901-24452920 None:intergenic 55.0%
GCAAGCGCAAGAGACGATAC+AGG - chr4_2:24452082-24452101 None:intergenic 55.0%
! GCGCAAGAGGCGAGTCATTT+TGG + chr4_2:24452324-24452343 Msa0595400:CDS 55.0%
GTTGATGTTGGAGGTGGCAC+AGG + chr4_2:24452476-24452495 Msa0595400:CDS 55.0%
AGCGGCAGTTAACTACCGCT+CGG + chr4_2:24452761-24452780 Msa0595400:intron 55.0%
!! TGCCGCTCGGCATTTTTCAG+TGG - chr4_2:24452888-24452907 None:intergenic 55.0%
AACGGCAGTTAACTGCCGCT+CGG - chr4_2:24452901-24452920 None:intergenic 55.0%
GATGTTGGAGGTGGCACAGG+AGG + chr4_2:24452479-24452498 Msa0595400:CDS 60.0%
GATGTTGGAGGTGGCACAGG+AGG + chr4_2:24452479-24452498 Msa0595400:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 24451960 24453424 24451960 ID=Msa0595400;Name=Msa0595400
chr4_2 mRNA 24451960 24453424 24451960 ID=Msa0595400-mRNA-1;Parent=Msa0595400;Name=Msa0595400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|333
chr4_2 exon 24451960 24452658 24451960 ID=Msa0595400-mRNA-1:exon:6574;Parent=Msa0595400-mRNA-1
chr4_2 exon 24453122 24453424 24453122 ID=Msa0595400-mRNA-1:exon:6575;Parent=Msa0595400-mRNA-1
chr4_2 CDS 24451960 24452658 24451960 ID=Msa0595400-mRNA-1:cds;Parent=Msa0595400-mRNA-1
chr4_2 CDS 24453122 24453424 24453122 ID=Msa0595400-mRNA-1:cds;Parent=Msa0595400-mRNA-1
Gene Sequence

>Msa0595400

ATGGCACTCAAATCAGCTGTGGAACTAGGCATAGTAGATGCAATCCACAACCATGGAAAACCAATGACTCTTACTGAATTAGCTTCATCTTTGAAACTCCACCCTTCTAAAGTTAGTGTCCTGTATCGTCTCTTGCGCTTGCTAACACACAATGGTTTCTTTGCAAAAACAACACTGATGAATGACAAAGAAGGAGAAGAAGAAACAACATATTCTCTCACTCCTCCTTCAATGCTTCTCATCAGTGGCAAATCAACATGTTTGTCACCATTTGTTACCGGATCGCTTCATCCATGTCGTCTCAACATGTGGTACTCCTCTAAGAAATGGCTCACTGAGGACAAGGAACTCAGTCTCTTTGAGAGCGCAAGAGGCGAGTCATTTTGGGACTATCTTAACAAAGATTCTGAATCTGATGAACTGAGTATGTTTCAAGATGCCATGGCAGCTGATTCTCAAATCTTTAACATTGCACTAAAAGAGTATAGCCATGTGTTTGAAGGTTTGGAGTCTCTGGTTGATGTTGGAGGTGGCACAGGAGGTGTCACAAAACTTATCCATGAAACTTTTCCTCACCTCAAATGCATAGTATTTGACCAACCACAAGTTGTAAAAAACATGTCTGGAAACGAAAATTTGAAATTTGTTGGTGGAGATATGTTCGAATCTATCCCTCCTGCAGATGCTGTTTTACTCAAGTGGATTTTGCATGATTGGAATGATGAATTGTCCTTAAAGATATTGGAGAACTGCAAAAAAGCTATTTCAGGAAAAGGGACAAAAGGAAAGGTGATAATCATTGACATATCAATTGATGAAATAAGTGACAATCATAAAACAAATGAGTTGAAATTGGACTTTGACTTCATGATGATGACTTTGTTAAATGGAAAAGAAAGAGAGAAGAAAGAATGGGAGAAACTCATATTTGACTCCGGCTTCAGCAGCTATAAGATTACACCCATATGCGGCTTCAAGTCTATCATCGAAGTTTATCCTTAA

Protein sequence

>Msa0595400

MALKSAVELGIVDAIHNHGKPMTLTELASSLKLHPSKVSVLYRLLRLLTHNGFFAKTTLMNDKEGEEETTYSLTPPSMLLISGKSTCLSPFVTGSLHPCRLNMWYSSKKWLTEDKELSLFESARGESFWDYLNKDSESDELSMFQDAMAADSQIFNIALKEYSHVFEGLESLVDVGGGTGGVTKLIHETFPHLKCIVFDQPQVVKNMSGNENLKFVGGDMFESIPPADAVLLKWILHDWNDELSLKILENCKKAISGKGTKGKVIIIDISIDEISDNHKTNELKLDFDFMMMTLLNGKEREKKEWEKLIFDSGFSSYKITPICGFKSIIEVYP*