Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539630 | XP_013455259.2 | 90.876 | 274 | 25 | 0 | 1 | 274 | 90 | 363 | 4.92e-174 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539630 | sp|O24305|M3OM1_PEA | 73.333 | 270 | 70 | 1 | 5 | 274 | 93 | 360 | 4.75e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539630 | Q06YR0 | 90.876 | 274 | 25 | 0 | 1 | 274 | 90 | 363 | 2.35e-174 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0539630 | 0.800597 | 1.337786e-48 | -8.615850e-47 |
| Msa0045810 | Msa0539630 | 0.810913 | 9.100804e-51 | -8.615850e-47 |
| Msa0046200 | Msa0539630 | 0.813140 | 2.976495e-51 | -8.615850e-47 |
| Msa0062190 | Msa0539630 | 0.806502 | 7.972738e-50 | -8.615850e-47 |
| Msa0072180 | Msa0539630 | 0.816931 | 4.287142e-52 | -8.615850e-47 |
| Msa0106540 | Msa0539630 | 0.810404 | 1.172458e-50 | -8.615850e-47 |
| Msa0139500 | Msa0539630 | 0.808504 | 2.997686e-50 | -8.615850e-47 |
| Msa0163690 | Msa0539630 | 0.809351 | 1.975381e-50 | -8.615850e-47 |
| Msa0209060 | Msa0539630 | 0.800328 | 1.517613e-48 | -8.615850e-47 |
| Msa0386910 | Msa0539630 | 0.812720 | 3.678591e-51 | -8.615850e-47 |
| Msa0401500 | Msa0539630 | 0.807270 | 5.486581e-50 | -8.615850e-47 |
| Msa0439000 | Msa0539630 | 0.806921 | 6.505353e-50 | -8.615850e-47 |
| Msa0439370 | Msa0539630 | 0.804656 | 1.945262e-49 | -8.615850e-47 |
| Msa0448190 | Msa0539630 | 0.800581 | 1.347366e-48 | -8.615850e-47 |
| Msa0288540 | Msa0539630 | 0.806384 | 8.444217e-50 | -8.615850e-47 |
| Msa0326770 | Msa0539630 | 0.803299 | 3.725578e-49 | -8.615850e-47 |
| Msa0349100 | Msa0539630 | 0.802856 | 4.600415e-49 | -8.615850e-47 |
| Msa0523720 | Msa0539630 | 0.816552 | 5.215476e-52 | -8.615850e-47 |
| Msa0539600 | Msa0539630 | 0.817071 | 3.988067e-52 | -8.615850e-47 |
| Msa0539620 | Msa0539630 | 0.805022 | 1.631601e-49 | -8.615850e-47 |
| Msa0539630 | Msa0595390 | 0.831659 | 1.472705e-55 | -8.615850e-47 |
| Msa0539630 | Msa0595400 | 0.853490 | 2.308351e-61 | -8.615850e-47 |
| Msa0539630 | Msa0873880 | 0.800075 | 1.708416e-48 | -8.615850e-47 |
| Msa0539630 | Msa0880910 | 0.821828 | 3.279898e-53 | -8.615850e-47 |
| Msa0539630 | Msa0913550 | 0.802089 | 6.620166e-49 | -8.615850e-47 |
| Msa0539630 | Msa0946010 | 0.804581 | 2.016915e-49 | -8.615850e-47 |
| Msa0539630 | Msa0951150 | 0.810469 | 1.134904e-50 | -8.615850e-47 |
| Msa0539630 | Msa0967780 | 0.824459 | 7.979036e-54 | -8.615850e-47 |
| Msa0539630 | Msa1029820 | 0.828683 | 7.844054e-55 | -8.615850e-47 |
| Msa0539630 | Msa1068940 | 0.829654 | 4.561801e-55 | -8.615850e-47 |
| Msa0539630 | Msa1106030 | 0.800604 | 1.333317e-48 | -8.615850e-47 |
| Msa0539630 | Msa1108560 | 0.810782 | 9.715093e-51 | -8.615850e-47 |
| Msa0539630 | Msa1120770 | 0.816269 | 6.033378e-52 | -8.615850e-47 |
| Msa0539630 | Msa1156710 | 0.824294 | 8.724601e-54 | -8.615850e-47 |
| Msa0539630 | Msa1156920 | 0.813244 | 2.823411e-51 | -8.615850e-47 |
| Msa0539630 | Msa1160540 | 0.802612 | 5.165765e-49 | -8.615850e-47 |
| Msa0539630 | Msa1197910 | 0.804357 | 2.245291e-49 | -8.615850e-47 |
| Msa0539630 | Msa1205910 | 0.808218 | 3.449727e-50 | -8.615850e-47 |
| Msa0539630 | Msa1297850 | 0.817052 | 4.027227e-52 | -8.615850e-47 |
| Msa0539630 | Msa1323080 | 0.801071 | 1.070505e-48 | -8.615850e-47 |
| Msa0539630 | Msa1365450 | 0.803966 | 2.709115e-49 | -8.615850e-47 |
| Msa0539630 | Msa1368420 | 0.819144 | 1.355030e-52 | -8.615850e-47 |
| Msa0539630 | Msa1383220 | 0.817972 | 2.498486e-52 | -8.615850e-47 |
| Msa0539630 | Msa1405830 | 0.809869 | 1.528427e-50 | -8.615850e-47 |
| Msa0539630 | Msa1445890 | 0.812921 | 3.323663e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539630 | MtrunA17_Chr4g0014681 | 90.876 | 274 | 25 | 0 | 1 | 274 | 90 | 363 | 4.53e-178 | 494 |
| Msa0539630 | MtrunA17_Chr4g0014561 | 90.511 | 274 | 26 | 0 | 1 | 274 | 90 | 363 | 3.18e-177 | 492 |
| Msa0539630 | MtrunA17_Chr4g0014641 | 87.591 | 274 | 34 | 0 | 1 | 274 | 90 | 363 | 1.72e-172 | 480 |
| Msa0539630 | MtrunA17_Chr4g0046361 | 72.015 | 268 | 75 | 0 | 7 | 274 | 94 | 361 | 3.66e-144 | 409 |
| Msa0539630 | MtrunA17_Chr4g0046341 | 75.379 | 264 | 65 | 0 | 11 | 274 | 101 | 364 | 2.62e-137 | 391 |
| Msa0539630 | MtrunA17_Chr4g0014661 | 74.627 | 268 | 68 | 0 | 7 | 274 | 90 | 357 | 1.21e-136 | 389 |
| Msa0539630 | MtrunA17_Chr4g0014591 | 74.254 | 268 | 69 | 0 | 7 | 274 | 90 | 357 | 1.36e-127 | 366 |
| Msa0539630 | MtrunA17_Chr5g0432251 | 50.741 | 270 | 128 | 4 | 7 | 274 | 93 | 359 | 4.54e-90 | 271 |
| Msa0539630 | MtrunA17_Chr4g0014601 | 71.930 | 171 | 48 | 0 | 7 | 177 | 90 | 260 | 1.02e-89 | 267 |
| Msa0539630 | MtrunA17_Chr7g0219141 | 47.253 | 273 | 140 | 3 | 2 | 274 | 89 | 357 | 5.99e-88 | 266 |
| Msa0539630 | MtrunA17_Chr5g0432301 | 50.365 | 274 | 131 | 4 | 2 | 273 | 89 | 359 | 7.60e-88 | 265 |
| Msa0539630 | MtrunA17_Chr1g0188391 | 48.727 | 275 | 134 | 5 | 3 | 274 | 91 | 361 | 3.34e-87 | 264 |
| Msa0539630 | MtrunA17_Chr7g0223231 | 48.855 | 262 | 127 | 3 | 11 | 272 | 94 | 348 | 1.56e-85 | 259 |
| Msa0539630 | MtrunA17_Chr7g0219161 | 48.855 | 262 | 128 | 5 | 2 | 262 | 89 | 345 | 4.00e-85 | 258 |
| Msa0539630 | MtrunA17_Chr5g0432241 | 49.091 | 275 | 135 | 4 | 2 | 274 | 89 | 360 | 4.06e-85 | 258 |
| Msa0539630 | MtrunA17_Chr7g0223241 | 51.145 | 262 | 121 | 3 | 11 | 272 | 94 | 348 | 2.93e-84 | 256 |
| Msa0539630 | MtrunA17_Chr4g0046531 | 50.929 | 269 | 128 | 3 | 7 | 274 | 453 | 718 | 3.43e-82 | 261 |
| Msa0539630 | MtrunA17_Chr4g0046531 | 51.119 | 268 | 127 | 3 | 7 | 273 | 91 | 355 | 1.30e-81 | 259 |
| Msa0539630 | MtrunA17_Chr5g0432261 | 46.296 | 270 | 116 | 2 | 5 | 274 | 87 | 327 | 9.26e-79 | 241 |
| Msa0539630 | MtrunA17_Chr4g0040621 | 45.255 | 274 | 147 | 2 | 2 | 274 | 98 | 369 | 4.27e-78 | 241 |
| Msa0539630 | MtrunA17_Chr5g0432211 | 49.593 | 246 | 119 | 4 | 31 | 274 | 103 | 345 | 1.20e-76 | 236 |
| Msa0539630 | MtrunA17_Chr1g0188371 | 45.455 | 253 | 132 | 4 | 5 | 254 | 91 | 340 | 1.36e-66 | 211 |
| Msa0539630 | MtrunA17_Chr7g0219171 | 55.970 | 134 | 58 | 1 | 141 | 274 | 116 | 248 | 8.33e-48 | 159 |
| Msa0539630 | MtrunA17_Chr3g0121301 | 36.882 | 263 | 158 | 6 | 11 | 270 | 100 | 357 | 9.51e-47 | 160 |
| Msa0539630 | MtrunA17_Chr4g0021981 | 36.059 | 269 | 164 | 6 | 9 | 274 | 105 | 368 | 1.83e-45 | 156 |
| Msa0539630 | MtrunA17_Chr4g0022021 | 36.059 | 269 | 164 | 6 | 9 | 274 | 105 | 368 | 8.25e-45 | 155 |
| Msa0539630 | MtrunA17_Chr1g0163601 | 33.077 | 260 | 167 | 4 | 3 | 261 | 102 | 355 | 1.20e-42 | 149 |
| Msa0539630 | MtrunA17_Chr7g0218181 | 31.560 | 282 | 169 | 7 | 3 | 273 | 98 | 366 | 2.70e-42 | 148 |
| Msa0539630 | MtrunA17_Chr7g0218131 | 35.628 | 247 | 150 | 5 | 29 | 273 | 130 | 369 | 3.06e-42 | 148 |
| Msa0539630 | MtrunA17_Chr7g0218301 | 33.700 | 273 | 169 | 7 | 3 | 272 | 107 | 370 | 4.42e-42 | 148 |
| Msa0539630 | MtrunA17_Chr1g0163611 | 33.455 | 275 | 172 | 7 | 3 | 273 | 102 | 369 | 5.89e-42 | 147 |
| Msa0539630 | MtrunA17_Chr7g0218271 | 32.967 | 273 | 171 | 7 | 3 | 272 | 107 | 370 | 6.74e-42 | 147 |
| Msa0539630 | MtrunA17_Chr1g0200491 | 33.205 | 259 | 166 | 4 | 4 | 261 | 106 | 358 | 3.84e-41 | 145 |
| Msa0539630 | MtrunA17_Chr2g0307521 | 34.426 | 244 | 152 | 4 | 29 | 272 | 123 | 358 | 6.80e-41 | 144 |
| Msa0539630 | MtrunA17_Chr8g0345851 | 34.221 | 263 | 162 | 6 | 3 | 261 | 22 | 277 | 1.35e-38 | 137 |
| Msa0539630 | MtrunA17_Chr5g0448091 | 37.611 | 226 | 130 | 7 | 43 | 266 | 138 | 354 | 3.46e-38 | 137 |
| Msa0539630 | MtrunA17_Chr7g0218261 | 31.734 | 271 | 176 | 5 | 3 | 272 | 101 | 363 | 3.48e-38 | 137 |
| Msa0539630 | MtrunA17_Chr1g0163621 | 31.923 | 260 | 170 | 4 | 3 | 261 | 116 | 369 | 4.62e-38 | 137 |
| Msa0539630 | MtrunA17_Chr7g0218211 | 32.721 | 272 | 173 | 5 | 3 | 272 | 101 | 364 | 1.29e-37 | 136 |
| Msa0539630 | MtrunA17_Chr8g0367501 | 33.948 | 271 | 169 | 6 | 4 | 272 | 98 | 360 | 4.18e-37 | 135 |
| Msa0539630 | MtrunA17_Chr8g0367491 | 33.083 | 266 | 168 | 6 | 4 | 266 | 111 | 369 | 4.54e-37 | 134 |
| Msa0539630 | MtrunA17_Chr8g0367451 | 34.646 | 254 | 157 | 5 | 4 | 255 | 111 | 357 | 6.27e-37 | 134 |
| Msa0539630 | MtrunA17_Chr4g0014611 | 78.000 | 100 | 22 | 0 | 175 | 274 | 8 | 107 | 8.50e-37 | 126 |
| Msa0539630 | MtrunA17_Chr8g0367441 | 34.252 | 254 | 158 | 5 | 4 | 255 | 112 | 358 | 1.85e-36 | 133 |
| Msa0539630 | MtrunA17_Chr3g0128011 | 38.806 | 201 | 117 | 3 | 61 | 260 | 208 | 403 | 4.79e-36 | 133 |
| Msa0539630 | MtrunA17_Chr2g0314271 | 32.963 | 270 | 171 | 6 | 6 | 271 | 88 | 351 | 1.81e-34 | 127 |
| Msa0539630 | MtrunA17_Chr7g0276411 | 37.811 | 201 | 117 | 5 | 61 | 259 | 153 | 347 | 2.47e-34 | 127 |
| Msa0539630 | MtrunA17_Chr7g0276401 | 37.073 | 205 | 121 | 4 | 61 | 264 | 166 | 363 | 7.35e-34 | 126 |
| Msa0539630 | MtrunA17_Chr3g0085201 | 32.308 | 260 | 168 | 5 | 3 | 261 | 91 | 343 | 9.30e-34 | 125 |
| Msa0539630 | MtrunA17_Chr3g0085211 | 32.950 | 261 | 167 | 5 | 2 | 261 | 103 | 356 | 7.47e-33 | 123 |
| Msa0539630 | MtrunA17_Chr8g0367381 | 37.363 | 182 | 108 | 3 | 61 | 241 | 149 | 325 | 8.15e-32 | 119 |
| Msa0539630 | MtrunA17_Chr3g0130011 | 31.111 | 270 | 174 | 7 | 9 | 273 | 95 | 357 | 1.67e-30 | 117 |
| Msa0539630 | MtrunA17_Chr3g0130061 | 31.081 | 222 | 145 | 4 | 53 | 271 | 139 | 355 | 4.46e-29 | 113 |
| Msa0539630 | MtrunA17_Chr4g0014671 | 75.238 | 105 | 26 | 0 | 170 | 274 | 30 | 134 | 1.11e-28 | 106 |
| Msa0539630 | MtrunA17_Chr4g0014621 | 77.273 | 66 | 15 | 0 | 209 | 274 | 197 | 262 | 2.62e-21 | 90.5 |
| Msa0539630 | MtrunA17_Chr6g0482291 | 31.818 | 154 | 93 | 3 | 107 | 259 | 19 | 161 | 2.33e-19 | 83.2 |
| Msa0539630 | MtrunA17_Chr8g0367461 | 41.667 | 108 | 58 | 3 | 161 | 266 | 1 | 105 | 3.22e-19 | 80.9 |
| Msa0539630 | MtrunA17_Chr4g0014551 | 97.727 | 44 | 1 | 0 | 231 | 274 | 1 | 44 | 9.73e-16 | 69.7 |
| Msa0539630 | MtrunA17_Chr8g0367401 | 35.135 | 111 | 70 | 1 | 64 | 174 | 2 | 110 | 1.58e-15 | 72.0 |
| Msa0539630 | MtrunA17_Chr1g0170941 | 45.455 | 66 | 36 | 0 | 107 | 172 | 11 | 76 | 8.74e-13 | 62.4 |
| Msa0539630 | MtrunA17_Chr8g0367391 | 35.345 | 116 | 68 | 4 | 147 | 259 | 8 | 119 | 4.02e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539630 | AT1G51990.2 | 34.767 | 279 | 169 | 8 | 1 | 274 | 92 | 362 | 4.95e-42 | 148 |
| Msa0539630 | AT1G51990.1 | 34.752 | 282 | 165 | 9 | 1 | 274 | 92 | 362 | 3.25e-40 | 143 |
| Msa0539630 | AT1G77520.1 | 32.624 | 282 | 167 | 7 | 2 | 273 | 112 | 380 | 8.19e-37 | 134 |
| Msa0539630 | AT5G54160.1 | 37.624 | 202 | 120 | 3 | 61 | 261 | 152 | 348 | 1.38e-36 | 133 |
| Msa0539630 | AT4G35150.1 | 33.641 | 217 | 131 | 5 | 66 | 273 | 111 | 323 | 8.43e-34 | 125 |
| Msa0539630 | AT1G33030.1 | 31.111 | 270 | 173 | 7 | 1 | 264 | 80 | 342 | 1.63e-33 | 125 |
| Msa0539630 | AT4G35160.1 | 33.571 | 280 | 164 | 9 | 10 | 273 | 107 | 380 | 1.91e-31 | 120 |
| Msa0539630 | AT1G77530.1 | 36.752 | 234 | 139 | 5 | 42 | 273 | 154 | 380 | 9.50e-30 | 115 |
| Msa0539630 | AT3G53140.1 | 30.996 | 271 | 175 | 8 | 6 | 271 | 93 | 356 | 2.89e-29 | 114 |
| Msa0539630 | AT1G63140.2 | 35.065 | 231 | 141 | 5 | 45 | 273 | 157 | 380 | 5.86e-29 | 113 |
| Msa0539630 | AT1G63140.4 | 35.065 | 231 | 141 | 5 | 45 | 273 | 177 | 400 | 5.95e-29 | 114 |
| Msa0539630 | AT5G53810.1 | 31.047 | 277 | 179 | 6 | 2 | 273 | 108 | 377 | 1.61e-28 | 112 |
| Msa0539630 | AT1G62900.1 | 36.458 | 192 | 117 | 3 | 84 | 273 | 16 | 204 | 1.50e-26 | 103 |
| Msa0539630 | AT5G37170.2 | 31.959 | 194 | 126 | 4 | 83 | 273 | 43 | 233 | 6.01e-24 | 97.1 |
| Msa0539630 | AT5G37170.1 | 31.959 | 194 | 126 | 4 | 83 | 273 | 143 | 333 | 1.31e-23 | 98.2 |
| Msa0539630 | AT1G76790.1 | 34.802 | 227 | 132 | 7 | 42 | 266 | 139 | 351 | 5.45e-23 | 97.1 |
| Msa0539630 | AT5G37170.3 | 34.483 | 174 | 105 | 5 | 106 | 273 | 15 | 185 | 7.69e-23 | 93.2 |
| Msa0539630 | AT1G21100.1 | 30.531 | 226 | 139 | 7 | 42 | 261 | 147 | 360 | 2.47e-20 | 89.7 |
| Msa0539630 | AT1G21130.1 | 30.088 | 226 | 140 | 7 | 42 | 261 | 147 | 360 | 5.82e-20 | 88.6 |
| Msa0539630 | AT1G21110.1 | 28.077 | 260 | 166 | 8 | 6 | 256 | 108 | 355 | 2.51e-19 | 87.0 |
| Msa0539630 | AT1G21120.1 | 29.646 | 226 | 141 | 7 | 42 | 261 | 147 | 360 | 7.50e-19 | 85.5 |
| Msa0539630 | AT1G21120.2 | 34.783 | 138 | 85 | 3 | 126 | 261 | 274 | 408 | 1.51e-18 | 85.1 |
| Msa0539630 | AT1G33030.2 | 29.775 | 178 | 116 | 6 | 1 | 174 | 80 | 252 | 9.88e-13 | 67.0 |
| Msa0539630 | AT1G33030.3 | 29.775 | 178 | 116 | 6 | 1 | 174 | 80 | 252 | 1.62e-12 | 66.6 |
| Msa0539630 | AT1G63140.1 | 33.846 | 130 | 82 | 2 | 45 | 174 | 177 | 302 | 3.06e-11 | 63.2 |
Find 48 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTCTCCAGTATCTTTA+AGG | 0.192054 | 4_1:-20729273 | None:intergenic |
| GCGCAAGAGGCGAGTCATTT+TGG | 0.211023 | 4_1:+20728444 | Msa0539630:CDS |
| ATGATGATGACTTTGTTAAA+TGG | 0.247172 | 4_1:+20729410 | Msa0539630:CDS |
| TAAAACAAATGAGTTGAAAT+TGG | 0.270517 | 4_1:+20729376 | Msa0539630:CDS |
| CTCAGTGAGCCATTTCTTAG+AGG | 0.316815 | 4_1:-20728396 | None:intergenic |
| TAGCCATGTGTTTGAAGGTT+TGG | 0.322024 | 4_1:+20728565 | Msa0539630:CDS |
| TGAATTGTCCTTAAAGATAC+TGG | 0.359896 | 4_1:+20729265 | Msa0539630:CDS |
| AAGAAAGAGAGAAGAAAGAA+TGG | 0.382447 | 4_1:+20729435 | Msa0539630:CDS |
| GATAGACTTGAAGCCGCATA+TGG | 0.398440 | 4_1:-20729504 | None:intergenic |
| AACGAAAATTTGAAATTTGT+TGG | 0.401585 | 4_1:+20728707 | Msa0539630:CDS |
| TGTTTGTCACCATTTGTTAC+CGG | 0.405515 | 4_1:+20728338 | Msa0539630:CDS |
| TGAGGTGAGGAAAAGTTTCA+TGG | 0.410589 | 4_1:-20728637 | None:intergenic |
| GAGTATAGCCATGTGTTTGA+AGG | 0.421443 | 4_1:+20728560 | Msa0539630:CDS |
| GTTTGAAGGTTTGGAGTCTC+TGG | 0.426025 | 4_1:+20728574 | Msa0539630:CDS |
| CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 4_1:-20728305 | None:intergenic |
| TGTGGTACTCCTCTAAGAAA+TGG | 0.454917 | 4_1:+20728387 | Msa0539630:CDS |
| GTTGATGTTGGAGGTGGCAC+AGG | 0.461040 | 4_1:+20728596 | Msa0539630:CDS |
| ATTTCAGGAAAAGGGACAAA+AGG | 0.472680 | 4_1:+20729305 | Msa0539630:CDS |
| AGAAAGAGAGAAGAAAGAAT+GGG | 0.494469 | 4_1:+20729436 | Msa0539630:CDS |
| TTGGAGTCTCTGGTTGATGT+TGG | 0.495110 | 4_1:+20728584 | Msa0539630:CDS |
| GAAAATTTGAAATTTGTTGG+TGG | 0.495217 | 4_1:+20728710 | Msa0539630:CDS |
| GGTCAAATACTATGCATTTG+AGG | 0.496242 | 4_1:-20728655 | None:intergenic |
| GAGTCTCTGGTTGATGTTGG+AGG | 0.503583 | 4_1:+20728587 | Msa0539630:CDS |
| GATGTTGGAGGTGGCACAGG+AGG | 0.520874 | 4_1:+20728599 | Msa0539630:CDS |
| TGAAGCGATCCGGTAACAAA+TGG | 0.526003 | 4_1:-20728347 | None:intergenic |
| AGTCTCTTTGAGAGCGCAAG+AGG | 0.547483 | 4_1:+20728431 | Msa0539630:CDS |
| CATCTGCAGGAGGAATAGAT+TGG | 0.547615 | 4_1:-20728742 | None:intergenic |
| ACGACATGGATGAAGCGATC+CGG | 0.554100 | 4_1:-20728357 | None:intergenic |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_1:-20728755 | None:intergenic |
| AATCTTATAGCTGCTGAAGC+CGG | 0.565225 | 4_1:-20729477 | None:intergenic |
| CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 4_1:+20728305 | Msa0539630:CDS |
| GATTTGAGAATCAGCTGCCA+TGG | 0.583476 | 4_1:-20728519 | None:intergenic |
| TCTCTGGTTGATGTTGGAGG+TGG | 0.586831 | 4_1:+20728590 | Msa0539630:CDS |
| GAGAAACTCATATTTGACTC+CGG | 0.588298 | 4_1:+20729458 | Msa0539630:CDS |
| TACCACATGTTGAGACGACA+TGG | 0.595315 | 4_1:-20728371 | None:intergenic |
| ATCCATGTCGTCTCAACATG+TGG | 0.596571 | 4_1:+20728369 | Msa0539630:CDS |
| GAGTATGTTTCAAGATGCCA+TGG | 0.599550 | 4_1:+20728502 | Msa0539630:CDS |
| CATAGTATTTGACCAACCAC+AGG | 0.602779 | 4_1:+20728664 | Msa0539630:CDS |
| ATAGACTTGAAGCCGCATAT+GGG | 0.603518 | 4_1:-20729503 | None:intergenic |
| AATACTATGCATTTGAGGTG+AGG | 0.609052 | 4_1:-20728650 | None:intergenic |
| ACACTGATGAATGACAAAGA+AGG | 0.622288 | 4_1:+20728251 | None:intergenic |
| GAAATGGCTCACTGAGGACA+AGG | 0.624424 | 4_1:+20728403 | Msa0539630:CDS |
| AGGAAAAGGGACAAAAGGAA+AGG | 0.628316 | 4_1:+20729310 | Msa0539630:CDS |
| AGTAAAACAGCATCTGCAGG+AGG | 0.666345 | 4_1:-20728752 | None:intergenic |
| CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 4_1:-20728302 | None:intergenic |
| TATAAGATTACACCCATATG+CGG | 0.675606 | 4_1:+20729491 | Msa0539630:CDS |
| ACTCCAAACCTTCAAACACA+TGG | 0.677292 | 4_1:-20728568 | None:intergenic |
| CTCTAAGAAATGGCTCACTG+AGG | 0.732533 | 4_1:+20728397 | Msa0539630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAAAGATATATTTTTTT+GGG | + | chr4_1:20728801-20728820 | Msa0539630:intron | 10.0% |
| !!! | AGTTAAAGATATATTTTTTT+GGG | + | chr4_1:20728801-20728820 | Msa0539630:intron | 10.0% |
| !!! | GAGTTAAAGATATATTTTTT+TGG | + | chr4_1:20728800-20728819 | Msa0539630:intron | 15.0% |
| !!! | GAGTAATTTTCTTATTTTAT+TGG | + | chr4_1:20729075-20729094 | Msa0539630:intron | 15.0% |
| !!! | GATAAAATATTTTTTTACAG+TGG | + | chr4_1:20729222-20729241 | Msa0539630:intron | 15.0% |
| !!! | GAGTTAAAGATATATTTTTT+TGG | + | chr4_1:20728800-20728819 | Msa0539630:intron | 15.0% |
| !!! | GAGTAATTTTCTTATTTTAT+TGG | + | chr4_1:20729075-20729094 | Msa0539630:intron | 15.0% |
| !!! | GATAAAATATTTTTTTACAG+TGG | + | chr4_1:20729222-20729241 | Msa0539630:intron | 15.0% |
| !!! | AACGAAAATTTGAAATTTGT+TGG | + | chr4_1:20728707-20728726 | Msa0539630:CDS | 20.0% |
| !! | TGTTCATTATCTTATATCAA+CGG | - | chr4_1:20729039-20729058 | None:intergenic | 20.0% |
| !! | CTAATTAATCTTTGCAATAA+AGG | + | chr4_1:20729128-20729147 | Msa0539630:intron | 20.0% |
| !!! | TAAAACAAATGAGTTGAAAT+TGG | + | chr4_1:20729376-20729395 | Msa0539630:CDS | 20.0% |
| !!! | AACGAAAATTTGAAATTTGT+TGG | + | chr4_1:20728707-20728726 | Msa0539630:CDS | 20.0% |
| !! | TGTTCATTATCTTATATCAA+CGG | - | chr4_1:20729039-20729058 | None:intergenic | 20.0% |
| !! | CTAATTAATCTTTGCAATAA+AGG | + | chr4_1:20729128-20729147 | Msa0539630:intron | 20.0% |
| !!! | TAAAACAAATGAGTTGAAAT+TGG | + | chr4_1:20729376-20729395 | Msa0539630:CDS | 20.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | chr4_1:20728710-20728729 | Msa0539630:CDS | 25.0% |
| ! | TAATTAGTCATCAACTAAAC+TGG | - | chr4_1:20729115-20729134 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | chr4_1:20729296-20729315 | Msa0539630:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | chr4_1:20729297-20729316 | Msa0539630:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | chr4_1:20729410-20729429 | Msa0539630:CDS | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | chr4_1:20728710-20728729 | Msa0539630:CDS | 25.0% |
| ! | TAATTAGTCATCAACTAAAC+TGG | - | chr4_1:20729115-20729134 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | chr4_1:20729296-20729315 | Msa0539630:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | chr4_1:20729297-20729316 | Msa0539630:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | chr4_1:20729410-20729429 | Msa0539630:CDS | 25.0% |
| ACCGATCTTAAAATTGTCAA+CGG | + | chr4_1:20728972-20728991 | Msa0539630:intron | 30.0% | |
| TGAATTGTCCTTAAAGATAC+TGG | + | chr4_1:20729265-20729284 | Msa0539630:CDS | 30.0% | |
| ! | AACTGCAAAAAAGCTATTTC+AGG | + | chr4_1:20729290-20729309 | Msa0539630:CDS | 30.0% |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | chr4_1:20729435-20729454 | Msa0539630:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | chr4_1:20729436-20729455 | Msa0539630:CDS | 30.0% | |
| TATAAGATTACACCCATATG+CGG | + | chr4_1:20729491-20729510 | Msa0539630:CDS | 30.0% | |
| ACCGATCTTAAAATTGTCAA+CGG | + | chr4_1:20728972-20728991 | Msa0539630:intron | 30.0% | |
| TGAATTGTCCTTAAAGATAC+TGG | + | chr4_1:20729265-20729284 | Msa0539630:CDS | 30.0% | |
| ! | AACTGCAAAAAAGCTATTTC+AGG | + | chr4_1:20729290-20729309 | Msa0539630:CDS | 30.0% |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | chr4_1:20729435-20729454 | Msa0539630:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | chr4_1:20729436-20729455 | Msa0539630:CDS | 30.0% | |
| TATAAGATTACACCCATATG+CGG | + | chr4_1:20729491-20729510 | Msa0539630:CDS | 30.0% | |
| ! | TGTTTGTCACCATTTGTTAC+CGG | + | chr4_1:20728338-20728357 | Msa0539630:CDS | 35.0% |
| ! | AATACTATGCATTTGAGGTG+AGG | - | chr4_1:20728653-20728672 | None:intergenic | 35.0% |
| GGTCAAATACTATGCATTTG+AGG | - | chr4_1:20728658-20728677 | None:intergenic | 35.0% | |
| !!! | AGTTTTTTACAACCTGTGGT+TGG | - | chr4_1:20728679-20728698 | None:intergenic | 35.0% |
| !!! | GACAAGTTTTTTACAACCTG+TGG | - | chr4_1:20728683-20728702 | None:intergenic | 35.0% |
| CAGGTTGTAAAAAACTTGTC+TGG | + | chr4_1:20728683-20728702 | Msa0539630:CDS | 35.0% | |
| !!! | GCCGTTGACAATTTTAAGAT+CGG | - | chr4_1:20728976-20728995 | None:intergenic | 35.0% |
| !! | TACAGTGGATTTTGCATGAT+TGG | + | chr4_1:20729237-20729256 | Msa0539630:intron | 35.0% |
| ATTTCAGGAAAAGGGACAAA+AGG | + | chr4_1:20729305-20729324 | Msa0539630:CDS | 35.0% | |
| GAGAAACTCATATTTGACTC+CGG | + | chr4_1:20729458-20729477 | Msa0539630:CDS | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAC+CGG | + | chr4_1:20728338-20728357 | Msa0539630:CDS | 35.0% |
| ! | AATACTATGCATTTGAGGTG+AGG | - | chr4_1:20728653-20728672 | None:intergenic | 35.0% |
| GGTCAAATACTATGCATTTG+AGG | - | chr4_1:20728658-20728677 | None:intergenic | 35.0% | |
| !!! | AGTTTTTTACAACCTGTGGT+TGG | - | chr4_1:20728679-20728698 | None:intergenic | 35.0% |
| !!! | GACAAGTTTTTTACAACCTG+TGG | - | chr4_1:20728683-20728702 | None:intergenic | 35.0% |
| CAGGTTGTAAAAAACTTGTC+TGG | + | chr4_1:20728683-20728702 | Msa0539630:CDS | 35.0% | |
| !!! | GCCGTTGACAATTTTAAGAT+CGG | - | chr4_1:20728976-20728995 | None:intergenic | 35.0% |
| !! | TACAGTGGATTTTGCATGAT+TGG | + | chr4_1:20729237-20729256 | Msa0539630:intron | 35.0% |
| ATTTCAGGAAAAGGGACAAA+AGG | + | chr4_1:20729305-20729324 | Msa0539630:CDS | 35.0% | |
| GAGAAACTCATATTTGACTC+CGG | + | chr4_1:20729458-20729477 | Msa0539630:CDS | 35.0% | |
| ! | TGTGGTACTCCTCTAAGAAA+TGG | + | chr4_1:20728387-20728406 | Msa0539630:CDS | 40.0% |
| GAGTATGTTTCAAGATGCCA+TGG | + | chr4_1:20728502-20728521 | Msa0539630:CDS | 40.0% | |
| GAGTATAGCCATGTGTTTGA+AGG | + | chr4_1:20728560-20728579 | Msa0539630:CDS | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | chr4_1:20728565-20728584 | Msa0539630:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | chr4_1:20728571-20728590 | None:intergenic | 40.0% | |
| TGAGGTGAGGAAAAGTTTCA+TGG | - | chr4_1:20728640-20728659 | None:intergenic | 40.0% | |
| CATAGTATTTGACCAACCAC+AGG | + | chr4_1:20728664-20728683 | Msa0539630:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_1:20728758-20728777 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_1:20728757-20728776 | Msa0539630:CDS | 40.0% |
| ! | GGGAACGAGCAATTTTACAA+GGG | - | chr4_1:20728854-20728873 | None:intergenic | 40.0% |
| ! | AGGGAACGAGCAATTTTACA+AGG | - | chr4_1:20728855-20728874 | None:intergenic | 40.0% |
| GTTAACTGCCGCTGATATAA+GGG | - | chr4_1:20728874-20728893 | None:intergenic | 40.0% | |
| AGTTAACTGCCGCTGATATA+AGG | - | chr4_1:20728875-20728894 | None:intergenic | 40.0% | |
| !! | TTCGATCATAAAAGCGTCAG+TGG | - | chr4_1:20728928-20728947 | None:intergenic | 40.0% |
| GCAGTTCTCCAGTATCTTTA+AGG | - | chr4_1:20729276-20729295 | None:intergenic | 40.0% | |
| AGGAAAAGGGACAAAAGGAA+AGG | + | chr4_1:20729310-20729329 | Msa0539630:CDS | 40.0% | |
| AATCTTATAGCTGCTGAAGC+CGG | - | chr4_1:20729480-20729499 | None:intergenic | 40.0% | |
| ATAGACTTGAAGCCGCATAT+GGG | - | chr4_1:20729506-20729525 | None:intergenic | 40.0% | |
| ! | TGTGGTACTCCTCTAAGAAA+TGG | + | chr4_1:20728387-20728406 | Msa0539630:CDS | 40.0% |
| GAGTATGTTTCAAGATGCCA+TGG | + | chr4_1:20728502-20728521 | Msa0539630:CDS | 40.0% | |
| GAGTATAGCCATGTGTTTGA+AGG | + | chr4_1:20728560-20728579 | Msa0539630:CDS | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | chr4_1:20728565-20728584 | Msa0539630:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | chr4_1:20728571-20728590 | None:intergenic | 40.0% | |
| TGAGGTGAGGAAAAGTTTCA+TGG | - | chr4_1:20728640-20728659 | None:intergenic | 40.0% | |
| CATAGTATTTGACCAACCAC+AGG | + | chr4_1:20728664-20728683 | Msa0539630:CDS | 40.0% | |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_1:20728758-20728777 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_1:20728757-20728776 | Msa0539630:CDS | 40.0% |
| ! | GGGAACGAGCAATTTTACAA+GGG | - | chr4_1:20728854-20728873 | None:intergenic | 40.0% |
| ! | AGGGAACGAGCAATTTTACA+AGG | - | chr4_1:20728855-20728874 | None:intergenic | 40.0% |
| GTTAACTGCCGCTGATATAA+GGG | - | chr4_1:20728874-20728893 | None:intergenic | 40.0% | |
| AGTTAACTGCCGCTGATATA+AGG | - | chr4_1:20728875-20728894 | None:intergenic | 40.0% | |
| !! | TTCGATCATAAAAGCGTCAG+TGG | - | chr4_1:20728928-20728947 | None:intergenic | 40.0% |
| GCAGTTCTCCAGTATCTTTA+AGG | - | chr4_1:20729276-20729295 | None:intergenic | 40.0% | |
| AGGAAAAGGGACAAAAGGAA+AGG | + | chr4_1:20729310-20729329 | Msa0539630:CDS | 40.0% | |
| AATCTTATAGCTGCTGAAGC+CGG | - | chr4_1:20729480-20729499 | None:intergenic | 40.0% | |
| ATAGACTTGAAGCCGCATAT+GGG | - | chr4_1:20729506-20729525 | None:intergenic | 40.0% | |
| !! | CTGATGAGAAGCATTGAAGG+AGG | - | chr4_1:20728305-20728324 | None:intergenic | 45.0% |
| !! | CCACTGATGAGAAGCATTGA+AGG | - | chr4_1:20728308-20728327 | None:intergenic | 45.0% |
| CCTTCAATGCTTCTCATCAG+TGG | + | chr4_1:20728305-20728324 | Msa0539630:CDS | 45.0% | |
| TGAAGCGATCCGGTAACAAA+TGG | - | chr4_1:20728350-20728369 | None:intergenic | 45.0% | |
| ATCCATGTCGTCTCAACATG+TGG | + | chr4_1:20728369-20728388 | Msa0539630:CDS | 45.0% | |
| TACCACATGTTGAGACGACA+TGG | - | chr4_1:20728374-20728393 | None:intergenic | 45.0% | |
| CTCAGTGAGCCATTTCTTAG+AGG | - | chr4_1:20728399-20728418 | None:intergenic | 45.0% | |
| ! | CTCTAAGAAATGGCTCACTG+AGG | + | chr4_1:20728397-20728416 | Msa0539630:CDS | 45.0% |
| GATTTGAGAATCAGCTGCCA+TGG | - | chr4_1:20728522-20728541 | None:intergenic | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | chr4_1:20728574-20728593 | Msa0539630:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | chr4_1:20728584-20728603 | Msa0539630:CDS | 45.0% |
| CATCTGCAGGAGGAATAGAT+TGG | - | chr4_1:20728745-20728764 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_1:20728755-20728774 | None:intergenic | 45.0% | |
| TGCTCGTTCCCTTATATCAG+CGG | + | chr4_1:20728863-20728882 | Msa0539630:intron | 45.0% | |
| TATCGCTGAAAAATGCCGAG+CGG | - | chr4_1:20728899-20728918 | None:intergenic | 45.0% | |
| GATAGACTTGAAGCCGCATA+TGG | - | chr4_1:20729507-20729526 | None:intergenic | 45.0% | |
| !! | CTGATGAGAAGCATTGAAGG+AGG | - | chr4_1:20728305-20728324 | None:intergenic | 45.0% |
| !! | CCACTGATGAGAAGCATTGA+AGG | - | chr4_1:20728308-20728327 | None:intergenic | 45.0% |
| CCTTCAATGCTTCTCATCAG+TGG | + | chr4_1:20728305-20728324 | Msa0539630:CDS | 45.0% | |
| TGAAGCGATCCGGTAACAAA+TGG | - | chr4_1:20728350-20728369 | None:intergenic | 45.0% | |
| ATCCATGTCGTCTCAACATG+TGG | + | chr4_1:20728369-20728388 | Msa0539630:CDS | 45.0% | |
| TACCACATGTTGAGACGACA+TGG | - | chr4_1:20728374-20728393 | None:intergenic | 45.0% | |
| CTCAGTGAGCCATTTCTTAG+AGG | - | chr4_1:20728399-20728418 | None:intergenic | 45.0% | |
| ! | CTCTAAGAAATGGCTCACTG+AGG | + | chr4_1:20728397-20728416 | Msa0539630:CDS | 45.0% |
| GATTTGAGAATCAGCTGCCA+TGG | - | chr4_1:20728522-20728541 | None:intergenic | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | chr4_1:20728574-20728593 | Msa0539630:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | chr4_1:20728584-20728603 | Msa0539630:CDS | 45.0% |
| CATCTGCAGGAGGAATAGAT+TGG | - | chr4_1:20728745-20728764 | None:intergenic | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_1:20728755-20728774 | None:intergenic | 45.0% | |
| TGCTCGTTCCCTTATATCAG+CGG | + | chr4_1:20728863-20728882 | Msa0539630:intron | 45.0% | |
| TATCGCTGAAAAATGCCGAG+CGG | - | chr4_1:20728899-20728918 | None:intergenic | 45.0% | |
| GATAGACTTGAAGCCGCATA+TGG | - | chr4_1:20729507-20729526 | None:intergenic | 45.0% | |
| ACGACATGGATGAAGCGATC+CGG | - | chr4_1:20728360-20728379 | None:intergenic | 50.0% | |
| GAAATGGCTCACTGAGGACA+AGG | + | chr4_1:20728403-20728422 | Msa0539630:CDS | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | + | chr4_1:20728431-20728450 | Msa0539630:CDS | 50.0% |
| !! | CGCAAGAGGCGAGTCATTTT+GGG | + | chr4_1:20728445-20728464 | Msa0539630:CDS | 50.0% |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | + | chr4_1:20728587-20728606 | Msa0539630:CDS | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | + | chr4_1:20728590-20728609 | Msa0539630:CDS | 50.0% |
| TGCCACTGAAAAATGCCGAG+CGG | + | chr4_1:20729003-20729022 | Msa0539630:intron | 50.0% | |
| ACGACATGGATGAAGCGATC+CGG | - | chr4_1:20728360-20728379 | None:intergenic | 50.0% | |
| GAAATGGCTCACTGAGGACA+AGG | + | chr4_1:20728403-20728422 | Msa0539630:CDS | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | + | chr4_1:20728431-20728450 | Msa0539630:CDS | 50.0% |
| !! | CGCAAGAGGCGAGTCATTTT+GGG | + | chr4_1:20728445-20728464 | Msa0539630:CDS | 50.0% |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | + | chr4_1:20728587-20728606 | Msa0539630:CDS | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | + | chr4_1:20728590-20728609 | Msa0539630:CDS | 50.0% |
| TGCCACTGAAAAATGCCGAG+CGG | + | chr4_1:20729003-20729022 | Msa0539630:intron | 50.0% | |
| ! | GCGCAAGAGGCGAGTCATTT+TGG | + | chr4_1:20728444-20728463 | Msa0539630:CDS | 55.0% |
| GTTGATGTTGGAGGTGGCAC+AGG | + | chr4_1:20728596-20728615 | Msa0539630:CDS | 55.0% | |
| AGCGGCAGTTAACTACCGCT+CGG | + | chr4_1:20728881-20728900 | Msa0539630:intron | 55.0% | |
| !! | TGCCGCTCGGCATTTTTCAG+TGG | - | chr4_1:20729008-20729027 | None:intergenic | 55.0% |
| AACGGCAGTTAACTGCCGCT+CGG | - | chr4_1:20729021-20729040 | None:intergenic | 55.0% | |
| ! | GCGCAAGAGGCGAGTCATTT+TGG | + | chr4_1:20728444-20728463 | Msa0539630:CDS | 55.0% |
| GTTGATGTTGGAGGTGGCAC+AGG | + | chr4_1:20728596-20728615 | Msa0539630:CDS | 55.0% | |
| AGCGGCAGTTAACTACCGCT+CGG | + | chr4_1:20728881-20728900 | Msa0539630:intron | 55.0% | |
| !! | TGCCGCTCGGCATTTTTCAG+TGG | - | chr4_1:20729008-20729027 | None:intergenic | 55.0% |
| AACGGCAGTTAACTGCCGCT+CGG | - | chr4_1:20729021-20729040 | None:intergenic | 55.0% | |
| GATGTTGGAGGTGGCACAGG+AGG | + | chr4_1:20728599-20728618 | Msa0539630:CDS | 60.0% | |
| GATGTTGGAGGTGGCACAGG+AGG | + | chr4_1:20728599-20728618 | Msa0539630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20728257 | 20729544 | 20728257 | ID=Msa0539630;Name=Msa0539630 |
| chr4_1 | mRNA | 20728257 | 20729544 | 20728257 | ID=Msa0539630-mRNA-1;Parent=Msa0539630;Name=Msa0539630-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|2|0|274 |
| chr4_1 | exon | 20728257 | 20728778 | 20728257 | ID=Msa0539630-mRNA-1:exon:5923;Parent=Msa0539630-mRNA-1 |
| chr4_1 | exon | 20729242 | 20729544 | 20729242 | ID=Msa0539630-mRNA-1:exon:5924;Parent=Msa0539630-mRNA-1 |
| chr4_1 | CDS | 20728257 | 20728778 | 20728257 | ID=Msa0539630-mRNA-1:cds;Parent=Msa0539630-mRNA-1 |
| chr4_1 | CDS | 20729242 | 20729544 | 20729242 | ID=Msa0539630-mRNA-1:cds;Parent=Msa0539630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
