AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595920 MtrunA17_Chr4g0015181 95.200 250 5 3 1 248 1 245 3.09e-175 481
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595920 AT2G44870.1 61.463 205 68 2 53 248 46 248 1.29e-75 229

Find 87 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGAGGTATTAATTATT+TGG 0.140256 4_2:-25429024 None:intergenic
GCAAATTGTGTCTTGCAATT+TGG 0.170819 4_2:-25428467 None:intergenic
TTCTTTCTTTCTTCCCTTGC+TGG 0.180619 4_2:-25423311 None:intergenic
AAGAAATCCCCTTTGCCTTT+AGG 0.248872 4_2:-25428545 None:intergenic
TTTGCTGGACCTCTTCTAAT+TGG 0.264317 4_2:+25427772 Msa0595920:CDS
TTGAAATTGGTGTTAAATAT+CGG 0.273456 4_2:+25423723 Msa0595920:CDS
TATGAATCCTCCTGCCTATA+TGG 0.288559 4_2:-25428908 None:intergenic
TTCATCTGGTTTGCATTCTC+TGG 0.294791 4_2:+25427706 Msa0595920:CDS
GTGGCGGTGACGGCGGTTGA+AGG 0.301958 4_2:-25423474 None:intergenic
CCCAGTTGGGAAAAGCTTTA+CGG 0.304266 4_2:+25423915 Msa0595920:CDS
GTTCAAAATGCATACAGTTT+TGG 0.304862 4_2:+25428883 Msa0595920:three_prime_UTR
TAATATGATGATAGCATAGA+TGG 0.314348 4_2:+25428815 Msa0595920:three_prime_UTR
CGTCTGTTTGGTTTGGGAAA+TGG 0.326761 4_2:-25423365 None:intergenic
CAACAATAAACCAAATGATA+TGG 0.333595 4_2:+25423532 Msa0595920:CDS
TCTGGTTTGCATTCTCTGGC+TGG 0.360142 4_2:+25427710 Msa0595920:CDS
CATCATTGATGTTGACTTTG+AGG 0.361123 4_2:+25428613 Msa0595920:CDS
ACATGGGTACTTCCATTTGC+TGG 0.366973 4_2:+25427757 Msa0595920:CDS
AACTAACCCTAGGCCAGTTA+AGG 0.370985 4_2:-25423766 None:intergenic
GTACCCATGTAGCGATTATC+AGG 0.373220 4_2:-25427744 None:intergenic
ATATATTCGTTTAATGTCTC+CGG 0.375187 4_2:+25428713 Msa0595920:three_prime_UTR
ACTGTAAACAATACCCAAAA+TGG 0.378984 4_2:-25429060 None:intergenic
AAAACCCTATCCATATCATT+TGG 0.381924 4_2:-25423542 None:intergenic
ATTGTTGCGTCTGTTTGGTT+TGG 0.388800 4_2:-25423372 None:intergenic
TTCTTGAATGAAACGGTTAC+GGG 0.393276 4_2:-25423506 None:intergenic
TTGCTGGACCTCTTCTAATT+GGG 0.399505 4_2:+25427773 Msa0595920:CDS
AAGTCAACATCAATGATGTT+GGG 0.400393 4_2:-25428608 None:intergenic
ATGAAACGGTTACGGGTTGC+CGG 0.404141 4_2:-25423499 None:intergenic
TTGTTGCGTCTGTTTGGTTT+GGG 0.415873 4_2:-25423371 None:intergenic
AATTGCAAGACACAATTTGC+CGG 0.417824 4_2:+25428470 Msa0595920:CDS
CGGTTACGGGTTGCCGGTGG+TGG 0.421312 4_2:-25423493 None:intergenic
GGTATTGTTTACAGTTCTGC+AGG 0.421429 4_2:+25429068 Msa0595920:three_prime_UTR
ATATGAAGCGCATATGGTTT+CGG 0.421608 4_2:+25428774 Msa0595920:three_prime_UTR
TGTGCTATATGAAGCGCATA+TGG 0.422910 4_2:+25428768 Msa0595920:three_prime_UTR
AACTACTTGATTCTTGTAAC+CGG 0.423852 4_2:-25428489 None:intergenic
CTTTGATTGTTGCGTCTGTT+TGG 0.430031 4_2:-25423377 None:intergenic
GGCCAACAGCTTAGTTATCA+AGG 0.432409 4_2:+25427801 Msa0595920:CDS
AGGCCAGTTAAGGGCAAAAT+CGG 0.432734 4_2:-25423756 None:intergenic
GTTCTTGAATGAAACGGTTA+CGG 0.435446 4_2:-25423507 None:intergenic
GTTGCCGGTGGTGGCGGTGA+CGG 0.453861 4_2:-25423484 None:intergenic
CGGTGACGGCGGTTGAAGGG+TGG 0.455893 4_2:-25423470 None:intergenic
ATCAAGTTACCAATTCTCTC+TGG 0.457495 4_2:+25428654 Msa0595920:three_prime_UTR
ATTAGAAGAGGTCCAGCAAA+TGG 0.472232 4_2:-25427769 None:intergenic
GGGAGTGGAGGTGCCAGCAA+GGG 0.474880 4_2:+25423298 Msa0595920:five_prime_UTR
AAAGTCAACATCAATGATGT+TGG 0.479956 4_2:-25428609 None:intergenic
ACTAACCCTAGGCCAGTTAA+GGG 0.487848 4_2:-25423765 None:intergenic
TTACGGGTTGCCGGTGGTGG+CGG 0.488685 4_2:-25423490 None:intergenic
GAGTCAGATCCAGAGAGAAT+TGG 0.489245 4_2:-25428663 None:intergenic
ATAAACCAAATGATATGGAT+AGG 0.489253 4_2:+25423537 Msa0595920:CDS
GGTGACGGCGGTTGAAGGGT+GGG 0.492527 4_2:-25423469 None:intergenic
TGGCGGTGACGGCGGTTGAA+GGG 0.495800 4_2:-25423473 None:intergenic
GGTTCCTGATAATCGCTACA+TGG 0.513233 4_2:+25427740 Msa0595920:CDS
TGTGGCAACCTAAAGGCAAA+GGG 0.513451 4_2:+25428537 Msa0595920:CDS
CGGTTGAAGGGTGGGAGGTG+TGG 0.516128 4_2:-25423461 None:intergenic
GTAAGAACAAACTTCAATCA+AGG 0.521498 4_2:-25428742 None:intergenic
TATATTCGTTTAATGTCTCC+GGG 0.532668 4_2:+25428714 Msa0595920:three_prime_UTR
GTTGTTGTTCTTGAATGAAA+CGG 0.534891 4_2:-25423513 None:intergenic
AGGGAGTGGAGGTGCCAGCA+AGG 0.539070 4_2:+25423297 None:intergenic
ACCTCTTCTAATTGGGACAT+TGG 0.542048 4_2:+25427780 Msa0595920:CDS
AACACTGTGTGGCAACCTAA+AGG 0.542175 4_2:+25428530 Msa0595920:CDS
ACCGCCGTCACCGCCACCAC+CGG 0.543092 4_2:+25423480 Msa0595920:CDS
TAAACCAAATGATATGGATA+GGG 0.546958 4_2:+25423538 Msa0595920:CDS
TCGTGTAAAAGTGGAGGGAG+TGG 0.554653 4_2:+25423283 None:intergenic
TGCATATGTACTGTATTGAG+AGG 0.558245 4_2:+25428936 Msa0595920:three_prime_UTR
GCAAAATCATATTATTTGAG+AGG 0.559796 4_2:-25429038 None:intergenic
AAAGGGGATTTCTTTACAAG+AGG 0.560839 4_2:+25428554 Msa0595920:CDS
GTGTGGCAACCTAAAGGCAA+AGG 0.564536 4_2:+25428536 Msa0595920:CDS
AAGCTAAGAAAACTGCTGAA+AGG 0.566137 4_2:+25423615 Msa0595920:CDS
AATATGATGATAGCATAGAT+GGG 0.570860 4_2:+25428816 Msa0595920:three_prime_UTR
ACAATGACAAACACATGCAC+AGG 0.572025 4_2:+25423407 Msa0595920:CDS
GCCGGTGGTGGCGGTGACGG+CGG 0.572648 4_2:-25423481 None:intergenic
GACGGCGGTTGAAGGGTGGG+AGG 0.588812 4_2:-25423466 None:intergenic
GATCTGACTCTGCAAACAGA+TGG 0.594211 4_2:+25428676 Msa0595920:three_prime_UTR
TACCTTGATAACTAAGCTGT+TGG 0.594517 4_2:-25427803 None:intergenic
AGTCAACATCAATGATGTTG+GGG 0.610971 4_2:-25428607 None:intergenic
GGGGATTTCTTTACAAGAGG+CGG 0.613608 4_2:+25428557 Msa0595920:CDS
GCGTGGCAAAACGCAAACGA+TGG 0.622683 4_2:+25423572 Msa0595920:CDS
GCCAATGTCCCAATTAGAAG+AGG 0.623244 4_2:-25427781 None:intergenic
TGTAAAAGTGGAGGGAGTGG+AGG 0.627438 4_2:+25423286 None:intergenic
TTTGGAGCCATATAGGCAGG+AGG 0.630061 4_2:+25428901 Msa0595920:three_prime_UTR
GTAGTTCGATGTACAAGATG+TGG 0.632051 4_2:+25428506 Msa0595920:CDS
GTTCCTGATAATCGCTACAT+GGG 0.649923 4_2:+25427741 Msa0595920:CDS
AAACGGTTACGGGTTGCCGG+TGG 0.668861 4_2:-25423496 None:intergenic
ACTTCAATCAAGGAATAACC+CGG 0.669715 4_2:-25428732 None:intergenic
GTTTAGACACGGAATACTGA+CGG 0.693461 4_2:-25423643 None:intergenic
CAAGATGTGGCAACACTGTG+TGG 0.713546 4_2:+25428519 Msa0595920:CDS
GTGGCAACCTAAAGGCAAAG+GGG 0.714098 4_2:+25428538 Msa0595920:CDS
AGAAGCAAGACGTTTAGACA+CGG 0.720219 4_2:-25423654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTATATATACTTAAATT+TGG + chr4_2:25425030-25425049 Msa0595920:intron 10.0%
!!! ATTTTATTTTTCATACATTT+TGG + chr4_2:25427550-25427569 Msa0595920:intron 10.0%
!!! TTTTATTTTTCATACATTTT+GGG + chr4_2:25427551-25427570 Msa0595920:intron 10.0%
!! TAATTATAAAAAAGGTAAAA+GGG - chr4_2:25429097-25429116 None:intergenic 10.0%
!!! ATATCAATATGATTTTTTTG+TGG + chr4_2:25423842-25423861 Msa0595920:intron 15.0%
!!! TATATCATTTTGATATTGTA+AGG + chr4_2:25424258-25424277 Msa0595920:intron 15.0%
!! AATAAATACAATTAAAGTTG+TGG + chr4_2:25424532-25424551 Msa0595920:intron 15.0%
!! ATAAATACAATTAAAGTTGT+GGG + chr4_2:25424533-25424552 Msa0595920:intron 15.0%
!!! ATAATTGCTAATATTTCTAT+TGG + chr4_2:25424786-25424805 Msa0595920:intron 15.0%
!!! TAATATTTCTATTGGTTTAA+TGG + chr4_2:25424794-25424813 Msa0595920:intron 15.0%
!! ATTTAAGTATATATACATTG+CGG - chr4_2:25425029-25425048 None:intergenic 15.0%
!! AATTCATTTATGCTTAAATT+TGG + chr4_2:25425164-25425183 Msa0595920:intron 15.0%
!!! TATAATTATTTGTTTCTTTC+TGG - chr4_2:25425571-25425590 None:intergenic 15.0%
!! TAAGCATATATTAACATAAA+TGG - chr4_2:25426156-25426175 None:intergenic 15.0%
!! AAAAAAAAAATCAATCCTAT+AGG - chr4_2:25426371-25426390 None:intergenic 15.0%
!!! TGTGTTTATTTCTTTTATAA+AGG + chr4_2:25427221-25427240 Msa0595920:intron 15.0%
!! TGTATGAAAAATAAAATTCA+TGG - chr4_2:25427547-25427566 None:intergenic 15.0%
!! ATAAAACGTTAAAATTCAAA+TGG - chr4_2:25428385-25428404 None:intergenic 15.0%
!!! TTGAAATTGGTGTTAAATAT+CGG + chr4_2:25423723-25423742 Msa0595920:CDS 20.0%
!!! TTTTTTGTTTTTTGCAGTAT+AGG + chr4_2:25423866-25423885 Msa0595920:intron 20.0%
!!! TATATGCTTTAGATTTTGTA+AGG + chr4_2:25424077-25424096 Msa0595920:intron 20.0%
!!! AGGAAAAATACTTGATTTTT+AGG + chr4_2:25424113-25424132 Msa0595920:intron 20.0%
!! CACAAATACAAAATGAAAAA+GGG - chr4_2:25424176-25424195 None:intergenic 20.0%
!!! CTCATATTCATACATTTTTT+CGG - chr4_2:25424366-25424385 None:intergenic 20.0%
!! TATGTGAGTTAATTTAACTA+AGG + chr4_2:25424426-25424445 Msa0595920:intron 20.0%
!! ATGTGAGTTAATTTAACTAA+GGG + chr4_2:25424427-25424446 Msa0595920:intron 20.0%
!!! TATCCTTTAACTAATGATTT+TGG + chr4_2:25424625-25424644 Msa0595920:intron 20.0%
!!! ATCCTTTAACTAATGATTTT+GGG + chr4_2:25424626-25424645 Msa0595920:intron 20.0%
!! TTTATATATAGATTGTTGCA+TGG + chr4_2:25424731-25424750 Msa0595920:intron 20.0%
!!! AAGATTAGCTCAATTTTTTA+GGG - chr4_2:25425192-25425211 None:intergenic 20.0%
!!! AAAGATTAGCTCAATTTTTT+AGG - chr4_2:25425193-25425212 None:intergenic 20.0%
!! GTTAAGAGATTGAAATAAAA+TGG - chr4_2:25425431-25425450 None:intergenic 20.0%
!! GTATTAAAGAGATATTAAGT+GGG - chr4_2:25425472-25425491 None:intergenic 20.0%
!! AGTATTAAAGAGATATTAAG+TGG - chr4_2:25425473-25425492 None:intergenic 20.0%
!! AGTTGTATATGGAATTTATA+GGG - chr4_2:25425607-25425626 None:intergenic 20.0%
!! AAGTTGTATATGGAATTTAT+AGG - chr4_2:25425608-25425627 None:intergenic 20.0%
!! AAATTTCTGTTTACATATCT+AGG + chr4_2:25426181-25426200 Msa0595920:intron 20.0%
!! CATATACATAATAAGTTTCA+GGG - chr4_2:25426263-25426282 None:intergenic 20.0%
!! ACATATACATAATAAGTTTC+AGG - chr4_2:25426264-25426283 None:intergenic 20.0%
!! ACTTATTATGTATATGTATC+TGG + chr4_2:25426267-25426286 Msa0595920:intron 20.0%
!!! TCTTCTAAGATATATGTATT+GGG + chr4_2:25426290-25426309 Msa0595920:intron 20.0%
!! AGTGTGTATATACTTAAATT+TGG + chr4_2:25426554-25426573 Msa0595920:intron 20.0%
!! ATTGATATTGCTAATAATTG+TGG + chr4_2:25426622-25426641 Msa0595920:intron 20.0%
!! TAAAAGAAAGTTATCACATT+AGG - chr4_2:25427283-25427302 None:intergenic 20.0%
!! ATATTTGATAAGTATAGTGT+TGG - chr4_2:25427502-25427521 None:intergenic 20.0%
!! AATAAAATTCATGGAAAACA+GGG - chr4_2:25427538-25427557 None:intergenic 20.0%
!! AAATAAAATTCATGGAAAAC+AGG - chr4_2:25427539-25427558 None:intergenic 20.0%
!! TTCATATCAAACATACATAT+AGG + chr4_2:25427579-25427598 Msa0595920:intron 20.0%
!! TCATATCAAACATACATATA+GGG + chr4_2:25427580-25427599 Msa0595920:intron 20.0%
!!! ATAGGGTATTATTTGATATT+TGG + chr4_2:25427597-25427616 Msa0595920:intron 20.0%
!! AATTATGATATTAACATGCA+AGG - chr4_2:25428076-25428095 None:intergenic 20.0%
!!! TCAATTAATTTTATGATGCT+TGG + chr4_2:25428207-25428226 Msa0595920:intron 20.0%
!!! AATTATGTTTCTACTGTAAT+TGG + chr4_2:25428431-25428450 Msa0595920:intron 20.0%
!!! TTTGAGAGGTATTAATTATT+TGG - chr4_2:25429027-25429046 None:intergenic 20.0%
!!! ATAATATGATTTTGCCATTT+TGG + chr4_2:25429046-25429065 Msa0595920:three_prime_UTR 20.0%
!!! TAATATGATTTTGCCATTTT+GGG + chr4_2:25429047-25429066 Msa0595920:three_prime_UTR 20.0%
!!! TTTGAGTTTTTGTTTGTGTT+TGG - chr4_2:25423340-25423359 None:intergenic 25.0%
! CAACAATAAACCAAATGATA+TGG + chr4_2:25423532-25423551 Msa0595920:CDS 25.0%
! ATAAACCAAATGATATGGAT+AGG + chr4_2:25423537-25423556 Msa0595920:CDS 25.0%
! TAAACCAAATGATATGGATA+GGG + chr4_2:25423538-25423557 Msa0595920:CDS 25.0%
!!! ATTGATCGTGATTTTGAAAT+TGG + chr4_2:25423710-25423729 Msa0595920:CDS 25.0%
!!! TCTCTTTCATTTTTGTGTTT+TGG + chr4_2:25423812-25423831 Msa0595920:intron 25.0%
!!! CTCTTTCATTTTTGTGTTTT+GGG + chr4_2:25423813-25423832 Msa0595920:intron 25.0%
!! GATGCAGATTAGTAAATTTT+TGG + chr4_2:25423888-25423907 Msa0595920:CDS 25.0%
!! TTTTCTTGTTCTTCTTTTGA+TGG + chr4_2:25423950-25423969 Msa0595920:intron 25.0%
! CAAGAAAAGATCAATACTAA+CGG - chr4_2:25423938-25423957 None:intergenic 25.0%
! CCACAAATACAAAATGAAAA+AGG - chr4_2:25424177-25424196 None:intergenic 25.0%
!!! CCTTTTTCATTTTGTATTTG+TGG + chr4_2:25424174-25424193 Msa0595920:intron 25.0%
!! ATTTTGTATTTGTGGATAGA+GGG + chr4_2:25424182-25424201 Msa0595920:intron 25.0%
! TTGATATTGTAAGGATTGAA+TGG + chr4_2:25424267-25424286 Msa0595920:intron 25.0%
! AAAATGTATGAATATGAGTC+AGG + chr4_2:25424368-25424387 Msa0595920:intron 25.0%
! ACCTATATTGTTTAATCCAT+TGG - chr4_2:25424652-25424671 None:intergenic 25.0%
!!! AATGGATTAAACAATATAGG+TGG + chr4_2:25424651-25424670 Msa0595920:intron 25.0%
!!! AATTGAAGTTTAGTTTGTCA+TGG + chr4_2:25424690-25424709 Msa0595920:intron 25.0%
!!! ATTGAAGTTTAGTTTGTCAT+GGG + chr4_2:25424691-25424710 Msa0595920:intron 25.0%
! AATGCAAAATACAATCAAGT+AGG - chr4_2:25424856-25424875 None:intergenic 25.0%
! AAATAACAAATGTGTCTTCA+TGG + chr4_2:25424898-25424917 Msa0595920:intron 25.0%
!!! GAGCAAGTACATATTTTTTA+GGG - chr4_2:25425058-25425077 None:intergenic 25.0%
!!! AGAGCAAGTACATATTTTTT+AGG - chr4_2:25425059-25425078 None:intergenic 25.0%
! AGATGTATCAAAGTTGTATA+TGG - chr4_2:25425618-25425637 None:intergenic 25.0%
! ATTAGTATTATGCAGTATCT+GGG - chr4_2:25425665-25425684 None:intergenic 25.0%
! TATTAGTATTATGCAGTATC+TGG - chr4_2:25425666-25425685 None:intergenic 25.0%
! ATACTGCATAATACTAATAG+CGG + chr4_2:25425667-25425686 Msa0595920:intron 25.0%
! CATAAAAAGTAAAGCAAGAA+AGG - chr4_2:25426113-25426132 None:intergenic 25.0%
!!! GTCTTCTAAGATATATGTAT+TGG + chr4_2:25426289-25426308 Msa0595920:intron 25.0%
!!! CTTCTAAGATATATGTATTG+GGG + chr4_2:25426291-25426310 Msa0595920:intron 25.0%
!!! TTCTAAGATATATGTATTGG+GGG + chr4_2:25426292-25426311 Msa0595920:intron 25.0%
!!! CAAGGATATTTTTGTAAACA+AGG - chr4_2:25426470-25426489 None:intergenic 25.0%
! AAAGTGATACGTAAAAGATA+GGG - chr4_2:25427044-25427063 None:intergenic 25.0%
!! TGATAACTTTCTTTTACTTG+AGG + chr4_2:25427287-25427306 Msa0595920:intron 25.0%
!! GATAACTTTCTTTTACTTGA+GGG + chr4_2:25427288-25427307 Msa0595920:intron 25.0%
! ATAAAATTCATGGAAAACAG+GGG - chr4_2:25427537-25427556 None:intergenic 25.0%
!! AAGAAAATCAATTGGTAACA+TGG - chr4_2:25427670-25427689 None:intergenic 25.0%
! TCTGCAAAAAGAAAATCAAT+TGG - chr4_2:25427678-25427697 None:intergenic 25.0%
! AATTTATTAAAACCGTACAC+TGG - chr4_2:25427906-25427925 None:intergenic 25.0%
! AAAAAGGGAAATGATAAAGT+AGG + chr4_2:25427992-25428011 Msa0595920:intron 25.0%
!! AAATTCTCTTTAGAAAAGCA+TGG + chr4_2:25428020-25428039 Msa0595920:intron 25.0%
!! AATTCTCTTTAGAAAAGCAT+GGG + chr4_2:25428021-25428040 Msa0595920:intron 25.0%
! GATCAAAAAGCTTATAAACA+AGG - chr4_2:25428110-25428129 None:intergenic 25.0%
! TTCAAGGAAAATGTTATTCT+TGG - chr4_2:25428136-25428155 None:intergenic 25.0%
! AACTTGGTATTATTGTTTCA+AGG - chr4_2:25428152-25428171 None:intergenic 25.0%
! TTTGAATAAAGCTGAAAACT+TGG - chr4_2:25428168-25428187 None:intergenic 25.0%
!!! ATTTTTTAGCGACTTTCAAA+AGG - chr4_2:25428414-25428433 None:intergenic 25.0%
! ATATATTCGTTTAATGTCTC+CGG + chr4_2:25428713-25428732 Msa0595920:three_prime_UTR 25.0%
! TAATATGATGATAGCATAGA+TGG + chr4_2:25428815-25428834 Msa0595920:three_prime_UTR 25.0%
! AATATGATGATAGCATAGAT+GGG + chr4_2:25428816-25428835 Msa0595920:three_prime_UTR 25.0%
! GCAAAATCATATTATTTGAG+AGG - chr4_2:25429041-25429060 None:intergenic 25.0%
! GTTGTTGTTGTTGTTGATAT+CGG - chr4_2:25423442-25423461 None:intergenic 30.0%
! GTTGTTGTTCTTGAATGAAA+CGG - chr4_2:25423516-25423535 None:intergenic 30.0%
AAAACCCTATCCATATCATT+TGG - chr4_2:25423545-25423564 None:intergenic 30.0%
TGGATAGGATATGTAATGAA+CGG + chr4_2:25424005-25424024 Msa0595920:intron 30.0%
!! TGCTTTAGATTTTGTAAGGA+TGG + chr4_2:25424081-25424100 Msa0595920:intron 30.0%
!!! TTTTGTAAGGATGGATTGAA+TGG + chr4_2:25424090-25424109 Msa0595920:intron 30.0%
! CATTTTGTATTTGTGGATAG+AGG + chr4_2:25424181-25424200 Msa0595920:intron 30.0%
! TTTTGTATTTGTGGATAGAG+GGG + chr4_2:25424183-25424202 Msa0595920:intron 30.0%
ATATTGTAAGGATTGAATGG+AGG + chr4_2:25424270-25424289 Msa0595920:intron 30.0%
! AGGAAGAAGATTTGTTTCTT+AGG + chr4_2:25424290-25424309 Msa0595920:intron 30.0%
! TTTCTTAGGTTTTCATTGCT+AGG + chr4_2:25424304-25424323 Msa0595920:intron 30.0%
TTTGTCTAGACAATTGAGAT+CGG - chr4_2:25424405-25424424 None:intergenic 30.0%
AATACAATTAAAGTTGTGGG+CGG + chr4_2:25424536-25424555 Msa0595920:intron 30.0%
AGTTAAAGGATAATGCTCTT+TGG - chr4_2:25424617-25424636 None:intergenic 30.0%
!! GCCAATGGATTAAACAATAT+AGG + chr4_2:25424648-25424667 Msa0595920:intron 30.0%
GTGCACAGTATATATTGTTT+AGG + chr4_2:25425001-25425020 Msa0595920:intron 30.0%
! CGTGAGATTGCAAATAATTT+TGG + chr4_2:25425231-25425250 Msa0595920:intron 30.0%
CAAGTCAAATATAACTGATG+TGG + chr4_2:25425255-25425274 Msa0595920:intron 30.0%
TTCCTTATTCTTTGCAATTG+CGG - chr4_2:25425281-25425300 None:intergenic 30.0%
ACAAACTAGGTTCCAAAAAA+GGG - chr4_2:25425337-25425356 None:intergenic 30.0%
AACAAACTAGGTTCCAAAAA+AGG - chr4_2:25425338-25425357 None:intergenic 30.0%
CAAAATGGGATAAACAAACT+AGG - chr4_2:25425350-25425369 None:intergenic 30.0%
! TTTTTCCTGCCTTTCAATTT+GGG - chr4_2:25425373-25425392 None:intergenic 30.0%
!!! TTTTTTCCTGCCTTTCAATT+TGG - chr4_2:25425374-25425393 None:intergenic 30.0%
! AAACAGAGTATTCGATTGAA+TGG + chr4_2:25425391-25425410 Msa0595920:intron 30.0%
GATACATATTGTGACATATC+AGG - chr4_2:25425549-25425568 None:intergenic 30.0%
GTAAGGAAACAAGGTTAAAT+GGG - chr4_2:25425715-25425734 None:intergenic 30.0%
AGTAAGGAAACAAGGTTAAA+TGG - chr4_2:25425716-25425735 None:intergenic 30.0%
! TATGATATGTTGCTTGTGTT+TGG + chr4_2:25425815-25425834 Msa0595920:intron 30.0%
TGTGCAAATCAGAGAAAAAA+AGG - chr4_2:25426050-25426069 None:intergenic 30.0%
TTTCTGTTTACATATCTAGG+TGG + chr4_2:25426184-25426203 Msa0595920:intron 30.0%
AATAAGTTTCAGGGTATACA+AGG - chr4_2:25426254-25426273 None:intergenic 30.0%
!! AAAGATTGGCTCAATTTTGT+TGG - chr4_2:25426584-25426603 None:intergenic 30.0%
ATCAATCAACATAACCACAA+TGG - chr4_2:25426608-25426627 None:intergenic 30.0%
! GGTTGCAGAATTTTATAGTT+TGG + chr4_2:25426859-25426878 Msa0595920:intron 30.0%
GAAAGTGATACGTAAAAGAT+AGG - chr4_2:25427045-25427064 None:intergenic 30.0%
TATACATGTTATCTAAGTCC+AGG - chr4_2:25427192-25427211 None:intergenic 30.0%
TTAGGAGCAAAAAAAATGAG+CGG - chr4_2:25427265-25427284 None:intergenic 30.0%
TATGAGTCGCTATAATTCTA+AGG + chr4_2:25427325-25427344 Msa0595920:intron 30.0%
!! TTGGCTTTTACATCTGAAAA+AGG - chr4_2:25427448-25427467 None:intergenic 30.0%
CAACTACTTAGAGTTCAAAT+TGG - chr4_2:25427467-25427486 None:intergenic 30.0%
CAATTTGAACTCTAAGTAGT+TGG + chr4_2:25427465-25427484 Msa0595920:intron 30.0%
AAGTAAAAGTTCATGCACAT+TGG - chr4_2:25427929-25427948 None:intergenic 30.0%
AATGTATGACCAAGCATAAT+TGG - chr4_2:25428238-25428257 None:intergenic 30.0%
AATTATGCTTGGTCATACAT+TGG + chr4_2:25428237-25428256 Msa0595920:intron 30.0%
AACTACTTGATTCTTGTAAC+CGG - chr4_2:25428492-25428511 None:intergenic 30.0%
AAGTCAACATCAATGATGTT+GGG - chr4_2:25428611-25428630 None:intergenic 30.0%
AAAGTCAACATCAATGATGT+TGG - chr4_2:25428612-25428631 None:intergenic 30.0%
TATATTCGTTTAATGTCTCC+GGG + chr4_2:25428714-25428733 Msa0595920:three_prime_UTR 30.0%
GTAAGAACAAACTTCAATCA+AGG - chr4_2:25428745-25428764 None:intergenic 30.0%
! GTTCAAAATGCATACAGTTT+TGG + chr4_2:25428883-25428902 Msa0595920:three_prime_UTR 30.0%
AAATTCTCCCCTAAAAACAA+TGG + chr4_2:25428964-25428983 Msa0595920:three_prime_UTR 30.0%
AATTCTCCCCTAAAAACAAT+GGG + chr4_2:25428965-25428984 Msa0595920:three_prime_UTR 30.0%
!!! AAATCCTCCCATTGTTTTTA+GGG - chr4_2:25428975-25428994 None:intergenic 30.0%
ACTGTAAACAATACCCAAAA+TGG - chr4_2:25429063-25429082 None:intergenic 30.0%
TTCTTGAATGAAACGGTTAC+GGG - chr4_2:25423509-25423528 None:intergenic 35.0%
GTTCTTGAATGAAACGGTTA+CGG - chr4_2:25423510-25423529 None:intergenic 35.0%
AAGCTAAGAAAACTGCTGAA+AGG + chr4_2:25423615-25423634 Msa0595920:CDS 35.0%
TGTAGAAATGAACTAACCCT+AGG - chr4_2:25423779-25423798 None:intergenic 35.0%
!! AAATTTTTGGATAGCCCAGT+TGG + chr4_2:25423901-25423920 Msa0595920:CDS 35.0%
!! AATTTTTGGATAGCCCAGTT+GGG + chr4_2:25423902-25423921 Msa0595920:CDS 35.0%
! TCCATTTTGCATTGTGTTTG+TGG + chr4_2:25423985-25424004 Msa0595920:intron 35.0%
TCCACAAACACAATGCAAAA+TGG - chr4_2:25423989-25424008 None:intergenic 35.0%
TTTGCATTGTGTTTGTGGAT+AGG + chr4_2:25423990-25424009 Msa0595920:intron 35.0%
GTAAGATAGAATTGTGTGAG+AGG + chr4_2:25424219-25424238 Msa0595920:intron 35.0%
! TAGGTTTTCATTGCTAGGTT+CGG + chr4_2:25424309-25424328 Msa0595920:intron 35.0%
GGAGCTTCTTAATGATAAGT+GGG + chr4_2:25424330-25424349 Msa0595920:intron 35.0%
TTAATGATAAGTGGGAGTCA+TGG + chr4_2:25424338-25424357 Msa0595920:intron 35.0%
GGCCCAAAATCATTAGTTAA+AGG - chr4_2:25424631-25424650 None:intergenic 35.0%
! AACTAATGATTTTGGGCCAA+TGG + chr4_2:25424633-25424652 Msa0595920:intron 35.0%
CAATATAGGTGGTTGAGATT+TGG + chr4_2:25424662-25424681 Msa0595920:intron 35.0%
ATCAAGTAGGAATCGATACT+AGG - chr4_2:25424843-25424862 None:intergenic 35.0%
TGTCTTCATGGAATCAAACA+TGG + chr4_2:25424910-25424929 Msa0595920:intron 35.0%
TCATGGAATCAAACATGGTT+CGG + chr4_2:25424915-25424934 Msa0595920:intron 35.0%
AAAATATGTACTTGCTCTCG+TGG + chr4_2:25425061-25425080 Msa0595920:intron 35.0%
!! TGAGCTAATCTTTGCTATTG+TGG + chr4_2:25425200-25425219 Msa0595920:intron 35.0%
CCTTTCAATTTGGGCAAAAT+GGG - chr4_2:25425364-25425383 None:intergenic 35.0%
! AGAGTATTCGATTGAATGGA+TGG + chr4_2:25425395-25425414 Msa0595920:intron 35.0%
ATCAGGATGCATATCAGTAT+CGG - chr4_2:25425532-25425551 None:intergenic 35.0%
GATTGTGAAGTAAGGAAACA+AGG - chr4_2:25425724-25425743 None:intergenic 35.0%
AAAGTAGGGATTGTGAAGTA+AGG - chr4_2:25425732-25425751 None:intergenic 35.0%
!! AATCCCTACTTTTCCATTCA+GGG + chr4_2:25425740-25425759 Msa0595920:intron 35.0%
ATTCCCTGAATGGAAAAGTA+GGG - chr4_2:25425746-25425765 None:intergenic 35.0%
ATGTAATTGCACACACTGTT+AGG + chr4_2:25425764-25425783 Msa0595920:intron 35.0%
!!! TGTTAGGTCTATTTTTGCTC+TGG + chr4_2:25425780-25425799 Msa0595920:intron 35.0%
TAAAGCAAGAAAGGAGCTTA+GGG - chr4_2:25426104-25426123 None:intergenic 35.0%
TAAGATATATGTATTGGGGG+TGG + chr4_2:25426295-25426314 Msa0595920:intron 35.0%
ATAACCACAATGGCAAAGAT+TGG - chr4_2:25426598-25426617 None:intergenic 35.0%
GCTAATAATTGTGGTCAAGT+CGG + chr4_2:25426631-25426650 Msa0595920:intron 35.0%
!! TTCTAGAACCATATTTGCTC+TGG + chr4_2:25426691-25426710 Msa0595920:intron 35.0%
AGAAAAGACTAGAGCTTGAA+AGG - chr4_2:25426820-25426839 None:intergenic 35.0%
TGTTATCTAAGTCCAGGATA+TGG - chr4_2:25427186-25427205 None:intergenic 35.0%
TAGGAGCAAAAAAAATGAGC+GGG - chr4_2:25427264-25427283 None:intergenic 35.0%
TATAGCGACTCATATATGCT+TGG - chr4_2:25427319-25427338 None:intergenic 35.0%
GAAATTGTGTAAAATGCACG+AGG + chr4_2:25427347-25427366 Msa0595920:intron 35.0%
TAAGTGGAACGGAAAATGAA+TGG - chr4_2:25427417-25427436 None:intergenic 35.0%
GAAAAAGGAACGCAAATAAG+TGG - chr4_2:25427433-25427452 None:intergenic 35.0%
! TGCAGACAATTTTCTTCATC+TGG + chr4_2:25427692-25427711 Msa0595920:intron 35.0%
! TACCTTGATAACTAAGCTGT+TGG - chr4_2:25427806-25427825 None:intergenic 35.0%
! TATCAAGGTATCATTGCTGT+TGG + chr4_2:25427816-25427835 Msa0595920:intron 35.0%
TTGGTCATACCAATTATGCT+TGG + chr4_2:25428226-25428245 Msa0595920:intron 35.0%
! TGTTTCTACTGTAATTGGAC+AGG + chr4_2:25428436-25428455 Msa0595920:intron 35.0%
GTTTCTACTGTAATTGGACA+GGG + chr4_2:25428437-25428456 Msa0595920:intron 35.0%
GCAAATTGTGTCTTGCAATT+TGG - chr4_2:25428470-25428489 None:intergenic 35.0%
AATTGCAAGACACAATTTGC+CGG + chr4_2:25428470-25428489 Msa0595920:CDS 35.0%
AAAGGGGATTTCTTTACAAG+AGG + chr4_2:25428554-25428573 Msa0595920:CDS 35.0%
AGTCAACATCAATGATGTTG+GGG - chr4_2:25428610-25428629 None:intergenic 35.0%
!! CATCATTGATGTTGACTTTG+AGG + chr4_2:25428613-25428632 Msa0595920:CDS 35.0%
ATCAAGTTACCAATTCTCTC+TGG + chr4_2:25428654-25428673 Msa0595920:three_prime_UTR 35.0%
ACTTCAATCAAGGAATAACC+CGG - chr4_2:25428735-25428754 None:intergenic 35.0%
ATATGAAGCGCATATGGTTT+CGG + chr4_2:25428774-25428793 Msa0595920:three_prime_UTR 35.0%
!!! ATACAGTTTTGGAGCCATAT+AGG + chr4_2:25428894-25428913 Msa0595920:three_prime_UTR 35.0%
TGCATATGTACTGTATTGAG+AGG + chr4_2:25428936-25428955 Msa0595920:three_prime_UTR 35.0%
!!! AATCCTCCCATTGTTTTTAG+GGG - chr4_2:25428974-25428993 None:intergenic 35.0%
!! GAAATCCTCCCATTGTTTTT+AGG - chr4_2:25428976-25428995 None:intergenic 35.0%
TTCTTTCTTTCTTCCCTTGC+TGG - chr4_2:25423314-25423333 None:intergenic 40.0%
! TTGTTGCGTCTGTTTGGTTT+GGG - chr4_2:25423374-25423393 None:intergenic 40.0%
ATTGTTGCGTCTGTTTGGTT+TGG - chr4_2:25423375-25423394 None:intergenic 40.0%
CTTTGATTGTTGCGTCTGTT+TGG - chr4_2:25423380-25423399 None:intergenic 40.0%
ACAATGACAAACACATGCAC+AGG + chr4_2:25423407-25423426 Msa0595920:CDS 40.0%
!!! ATAGGGTTTTGAAAGAAGCG+TGG + chr4_2:25423555-25423574 Msa0595920:CDS 40.0%
GTTTAGACACGGAATACTGA+CGG - chr4_2:25423646-25423665 None:intergenic 40.0%
AGAAGCAAGACGTTTAGACA+CGG - chr4_2:25423657-25423676 None:intergenic 40.0%
TGAACGGTGAAGTAGTAGTA+AGG + chr4_2:25424021-25424040 Msa0595920:intron 40.0%
!! TGTAAGGATGGATTGAATGG+AGG + chr4_2:25424093-25424112 Msa0595920:intron 40.0%
CGGAGCTTCTTAATGATAAG+TGG + chr4_2:25424329-25424348 Msa0595920:intron 40.0%
! AAGGGCGATGCTATTTAGTA+CGG + chr4_2:25424445-25424464 Msa0595920:intron 40.0%
TGTAGTATTCTTCGCTTTCG+TGG + chr4_2:25424577-25424596 Msa0595920:intron 40.0%
GTAGTATTCTTCGCTTTCGT+GGG + chr4_2:25424578-25424597 Msa0595920:intron 40.0%
! TAGTTTGTCATGGGTGTCAA+CGG + chr4_2:25424700-25424719 Msa0595920:intron 40.0%
CTAGGAACGTTACAAAAGCA+AGG - chr4_2:25424825-25424844 None:intergenic 40.0%
AGCATTACAGCATAGCATGA+TGG - chr4_2:25424970-25424989 None:intergenic 40.0%
! CCCATTTTGCCCAAATTGAA+AGG + chr4_2:25425361-25425380 Msa0595920:intron 40.0%
GCCTTTCAATTTGGGCAAAA+TGG - chr4_2:25425365-25425384 None:intergenic 40.0%
! TTTTGCCCAAATTGAAAGGC+AGG + chr4_2:25425365-25425384 Msa0595920:intron 40.0%
!! CAATCCCTACTTTTCCATTC+AGG + chr4_2:25425739-25425758 Msa0595920:intron 40.0%
CATTCCCTGAATGGAAAAGT+AGG - chr4_2:25425747-25425766 None:intergenic 40.0%
GTGCAATTACATTCCCTGAA+TGG - chr4_2:25425756-25425775 None:intergenic 40.0%
!!! AGGTCTATTTTTGCTCTGGT+TGG + chr4_2:25425784-25425803 Msa0595920:intron 40.0%
ATGAACCAGAACAATGACAC+AGG - chr4_2:25425845-25425864 None:intergenic 40.0%
GCTTGGACAAGAAAATGACA+TGG - chr4_2:25425883-25425902 None:intergenic 40.0%
GTAAAGCAAGAAAGGAGCTT+AGG - chr4_2:25426105-25426124 None:intergenic 40.0%
TCAGGGTATACAAGGATACA+GGG - chr4_2:25426246-25426265 None:intergenic 40.0%
TTCAGGGTATACAAGGATAC+AGG - chr4_2:25426247-25426266 None:intergenic 40.0%
TGTCTTCATGAAATCCAACG+TGG + chr4_2:25426440-25426459 Msa0595920:intron 40.0%
CAAAAATATCCTTGCCACTG+TGG + chr4_2:25426476-25426495 Msa0595920:intron 40.0%
CCAGTGTCAATGTAGCAATA+CGG - chr4_2:25426506-25426525 None:intergenic 40.0%
CGTATTGCTACATTGACACT+GGG + chr4_2:25426504-25426523 Msa0595920:intron 40.0%
AGACCGTGCAATTACAATTG+CGG - chr4_2:25426672-25426691 None:intergenic 40.0%
AGAACCATATTTGCTCTGGT+TGG + chr4_2:25426695-25426714 Msa0595920:intron 40.0%
TTCTTAGTTGCGTCCGTATA+TGG + chr4_2:25426728-25426747 Msa0595920:intron 40.0%
TGAAGCAGGTGTACCATATA+CGG - chr4_2:25426744-25426763 None:intergenic 40.0%
TTGGGCAAGAAAATGATACG+GGG - chr4_2:25426794-25426813 None:intergenic 40.0%
CTTGGGCAAGAAAATGATAC+GGG - chr4_2:25426795-25426814 None:intergenic 40.0%
GCTTGGGCAAGAAAATGATA+CGG - chr4_2:25426796-25426815 None:intergenic 40.0%
CGTAAAAGATAGGGCAAGAA+AGG - chr4_2:25427035-25427054 None:intergenic 40.0%
GGATATGGAAACAAGGATAC+AGG - chr4_2:25427171-25427190 None:intergenic 40.0%
! GTATCCTTGTTTCCATATCC+TGG + chr4_2:25427171-25427190 Msa0595920:intron 40.0%
AAGTCCAGGATATGGAAACA+AGG - chr4_2:25427178-25427197 None:intergenic 40.0%
AGGAGCAAAAAAAATGAGCG+GGG - chr4_2:25427263-25427282 None:intergenic 40.0%
TTGTGTAAAATGCACGAGGA+AGG + chr4_2:25427351-25427370 Msa0595920:intron 40.0%
AGGAACGCAAATAAGTGGAA+CGG - chr4_2:25427428-25427447 None:intergenic 40.0%
! TTCATCTGGTTTGCATTCTC+TGG + chr4_2:25427706-25427725 Msa0595920:CDS 40.0%
GTTCCTGATAATCGCTACAT+GGG + chr4_2:25427741-25427760 Msa0595920:CDS 40.0%
ATTAGAAGAGGTCCAGCAAA+TGG - chr4_2:25427772-25427791 None:intergenic 40.0%
TTTGCTGGACCTCTTCTAAT+TGG + chr4_2:25427772-25427791 Msa0595920:CDS 40.0%
TTGCTGGACCTCTTCTAATT+GGG + chr4_2:25427773-25427792 Msa0595920:CDS 40.0%
ACCTCTTCTAATTGGGACAT+TGG + chr4_2:25427780-25427799 Msa0595920:CDS 40.0%
! CAATTGTACTGACCAGTGTA+CGG + chr4_2:25427891-25427910 Msa0595920:intron 40.0%
GTCAGCAAATTCTCTTCTAG+AGG - chr4_2:25427965-25427984 None:intergenic 40.0%
!! AGAAGAGAATTTGCTGACGA+AGG + chr4_2:25427967-25427986 Msa0595920:intron 40.0%
!! GAAGAGAATTTGCTGACGAA+GGG + chr4_2:25427968-25427987 Msa0595920:intron 40.0%
TTTGCTGACGAAGGGAAAAA+AGG + chr4_2:25427976-25427995 Msa0595920:intron 40.0%
TTGCTGACGAAGGGAAAAAA+GGG + chr4_2:25427977-25427996 Msa0595920:intron 40.0%
GTAGTTCGATGTACAAGATG+TGG + chr4_2:25428506-25428525 Msa0595920:CDS 40.0%
AAGAAATCCCCTTTGCCTTT+AGG - chr4_2:25428548-25428567 None:intergenic 40.0%
TGTGCTATATGAAGCGCATA+TGG + chr4_2:25428768-25428787 Msa0595920:three_prime_UTR 40.0%
TATGAATCCTCCTGCCTATA+TGG - chr4_2:25428911-25428930 None:intergenic 40.0%
GGGAGGATTTCAAATTCTCA+AGG + chr4_2:25428985-25429004 Msa0595920:intron 40.0%
GGTATTGTTTACAGTTCTGC+AGG + chr4_2:25429068-25429087 Msa0595920:three_prime_UTR 40.0%
!! CGTCTGTTTGGTTTGGGAAA+TGG - chr4_2:25423368-25423387 None:intergenic 45.0%
!!! ACGCAAACGATGGTTTTGAG+CGG + chr4_2:25423582-25423601 Msa0595920:CDS 45.0%
! CTTCCGATTTTGCCCTTAAC+TGG + chr4_2:25423753-25423772 Msa0595920:CDS 45.0%
AGGCCAGTTAAGGGCAAAAT+CGG - chr4_2:25423759-25423778 None:intergenic 45.0%
!! ATTTTGCCCTTAACTGGCCT+AGG + chr4_2:25423759-25423778 Msa0595920:CDS 45.0%
!! TTTTGCCCTTAACTGGCCTA+GGG + chr4_2:25423760-25423779 Msa0595920:CDS 45.0%
ACTAACCCTAGGCCAGTTAA+GGG - chr4_2:25423768-25423787 None:intergenic 45.0%
AACTAACCCTAGGCCAGTTA+AGG - chr4_2:25423769-25423788 None:intergenic 45.0%
! CCGTAAAGCTTTTCCCAACT+GGG - chr4_2:25423918-25423937 None:intergenic 45.0%
CCCAGTTGGGAAAAGCTTTA+CGG + chr4_2:25423915-25423934 Msa0595920:CDS 45.0%
! ACCGTAAAGCTTTTCCCAAC+TGG - chr4_2:25423919-25423938 None:intergenic 45.0%
! AGGGCGATGCTATTTAGTAC+GGG + chr4_2:25424446-25424465 Msa0595920:intron 45.0%
AAAGTTGTGGGCGGAAATCA+TGG + chr4_2:25424545-25424564 Msa0595920:intron 45.0%
AAGTTGTGGGCGGAAATCAT+GGG + chr4_2:25424546-25424565 Msa0595920:intron 45.0%
! TCAAACATGGTTCGGCACTT+CGG + chr4_2:25424923-25424942 Msa0595920:intron 45.0%
AAGACCTCCCGCTTACTAAA+CGG + chr4_2:25425096-25425115 Msa0595920:intron 45.0%
! TAGAGCACCCGTTTAGTAAG+CGG - chr4_2:25425107-25425126 None:intergenic 45.0%
GGCCGCAATTGCAAAGAATA+AGG + chr4_2:25425276-25425295 Msa0595920:intron 45.0%
TGACTTCGTTGCCATAATCG+CGG + chr4_2:25425304-25425323 Msa0595920:intron 45.0%
TCTTGTCTTGCTCCACTCTT+TGG + chr4_2:25425903-25425922 Msa0595920:intron 45.0%
TTTGGTCCATCTGCAGAGTT+GGG + chr4_2:25425921-25425940 Msa0595920:intron 45.0%
! AGCATACCAGGAGTGTACAA+AGG - chr4_2:25426341-25426360 None:intergenic 45.0%
GTACACTCCTGGTATGCTAT+CGG + chr4_2:25426343-25426362 Msa0595920:intron 45.0%
ATAGGAACCGATAGCATACC+AGG - chr4_2:25426353-25426372 None:intergenic 45.0%
!! GGTATGCTATCGGTTCCTAT+AGG + chr4_2:25426353-25426372 Msa0595920:intron 45.0%
GTAAACAAGGCAAACCACGT+TGG - chr4_2:25426457-25426476 None:intergenic 45.0%
CCGTATTGCTACATTGACAC+TGG + chr4_2:25426503-25426522 Msa0595920:intron 45.0%
TGAGCCAATCTTTGCCATTG+TGG + chr4_2:25426591-25426610 Msa0595920:intron 45.0%
CTGCCGCAATTGTAATTGCA+CGG + chr4_2:25426666-25426685 Msa0595920:intron 45.0%
AGAGCCAACCAGAGCAAATA+TGG - chr4_2:25426702-25426721 None:intergenic 45.0%
GTACACCTGCTTCATTGTTC+TGG + chr4_2:25426750-25426769 Msa0595920:intron 45.0%
GTGAACCAGAACAATGAAGC+AGG - chr4_2:25426758-25426777 None:intergenic 45.0%
CTAGAGCTTGAAAGGAGCTT+GGG - chr4_2:25426812-25426831 None:intergenic 45.0%
ACTAGAGCTTGAAAGGAGCT+TGG - chr4_2:25426813-25426832 None:intergenic 45.0%
TTCTGCAACCAGAGCAACAA+CGG - chr4_2:25426849-25426868 None:intergenic 45.0%
ATAGGGCAAGAAAGGAGCTT+GGG - chr4_2:25427027-25427046 None:intergenic 45.0%
AGCAAAAAAAATGAGCGGGG+GGG - chr4_2:25427260-25427279 None:intergenic 45.0%
GAGCAAAAAAAATGAGCGGG+GGG - chr4_2:25427261-25427280 None:intergenic 45.0%
GGAGCAAAAAAAATGAGCGG+GGG - chr4_2:25427262-25427281 None:intergenic 45.0%
!!! CATTCTCTGGCTGGCTTTTT+CGG + chr4_2:25427719-25427738 Msa0595920:CDS 45.0%
GGTTCCTGATAATCGCTACA+TGG + chr4_2:25427740-25427759 Msa0595920:CDS 45.0%
GTACCCATGTAGCGATTATC+AGG - chr4_2:25427747-25427766 None:intergenic 45.0%
ACATGGGTACTTCCATTTGC+TGG + chr4_2:25427757-25427776 Msa0595920:CDS 45.0%
GCCAATGTCCCAATTAGAAG+AGG - chr4_2:25427784-25427803 None:intergenic 45.0%
GGCCAACAGCTTAGTTATCA+AGG + chr4_2:25427801-25427820 Msa0595920:CDS 45.0%
AACACTGTGTGGCAACCTAA+AGG + chr4_2:25428530-25428549 Msa0595920:CDS 45.0%
TGTGGCAACCTAAAGGCAAA+GGG + chr4_2:25428537-25428556 Msa0595920:CDS 45.0%
GGGGATTTCTTTACAAGAGG+CGG + chr4_2:25428557-25428576 Msa0595920:CDS 45.0%
GAGTCAGATCCAGAGAGAAT+TGG - chr4_2:25428666-25428685 None:intergenic 45.0%
GATCTGACTCTGCAAACAGA+TGG + chr4_2:25428676-25428695 Msa0595920:three_prime_UTR 45.0%
!!! AGTTTTGGAGCCATATAGGC+AGG + chr4_2:25428898-25428917 Msa0595920:three_prime_UTR 45.0%
TCTCCCCTAAAAACAATGGG+AGG + chr4_2:25428968-25428987 Msa0595920:three_prime_UTR 45.0%
! ATGAAACGGTTACGGGTTGC+CGG - chr4_2:25423502-25423521 None:intergenic 50.0%
! GCGATGCTATTTAGTACGGG+AGG + chr4_2:25424449-25424468 Msa0595920:intron 50.0%
AGACCTCCCGCTTACTAAAC+GGG + chr4_2:25425097-25425116 Msa0595920:intron 50.0%
! AGAGCACCCGTTTAGTAAGC+GGG - chr4_2:25425106-25425125 None:intergenic 50.0%
AGCAGCTCTCATAGCTCAGT+TGG - chr4_2:25425131-25425150 None:intergenic 50.0%
GTGACAGTGGTGTCTTTCGT+TGG - chr4_2:25425643-25425662 None:intergenic 50.0%
ATGCAGTATCTGGGTGACAG+TGG - chr4_2:25425656-25425675 None:intergenic 50.0%
! GTGCACCTGTGTCATTGTTC+TGG + chr4_2:25425837-25425856 Msa0595920:intron 50.0%
AGTGGAGCAAGACAAGAGCT+TGG - chr4_2:25425900-25425919 None:intergenic 50.0%
TCTGCAGATGGACCAAAGAG+TGG - chr4_2:25425918-25425937 None:intergenic 50.0%
CTTTGGTCCATCTGCAGAGT+TGG + chr4_2:25425920-25425939 Msa0595920:intron 50.0%
GAACTTCCCAACTCTGCAGA+TGG - chr4_2:25425930-25425949 None:intergenic 50.0%
TCCTTGCCTTTGTACACTCC+TGG + chr4_2:25426332-25426351 Msa0595920:intron 50.0%
! ACCAGGAGTGTACAAAGGCA+AGG - chr4_2:25426336-25426355 None:intergenic 50.0%
CTCTATCTCCGTTGTTGCTC+TGG + chr4_2:25426838-25426857 Msa0595920:intron 50.0%
TAGGGCAAGAAAGGAGCTTG+GGG - chr4_2:25427026-25427045 None:intergenic 50.0%
GATAGGGCAAGAAAGGAGCT+TGG - chr4_2:25427028-25427047 None:intergenic 50.0%
! TCTGGTTTGCATTCTCTGGC+TGG + chr4_2:25427710-25427729 Msa0595920:CDS 50.0%
CAAGATGTGGCAACACTGTG+TGG + chr4_2:25428519-25428538 Msa0595920:CDS 50.0%
GTGTGGCAACCTAAAGGCAA+AGG + chr4_2:25428536-25428555 Msa0595920:CDS 50.0%
GTGGCAACCTAAAGGCAAAG+GGG + chr4_2:25428538-25428557 Msa0595920:CDS 50.0%
! TTTGGAGCCATATAGGCAGG+AGG + chr4_2:25428901-25428920 Msa0595920:three_prime_UTR 50.0%
GCGTGGCAAAACGCAAACGA+TGG + chr4_2:25423572-25423591 Msa0595920:CDS 55.0%
TGTGTGTGTCGTGCGTTTCG+TGG - chr4_2:25424480-25424499 None:intergenic 55.0%
GGGCGGAAATCATGGGTAAC+TGG + chr4_2:25424553-25424572 Msa0595920:intron 55.0%
! AGCAATACGGAGCACCACAG+TGG - chr4_2:25426493-25426512 None:intergenic 55.0%
! AAACGGTTACGGGTTGCCGG+TGG - chr4_2:25423499-25423518 None:intergenic 60.0%
GCACCCGTTTAGTAAGCGGG+AGG - chr4_2:25425103-25425122 None:intergenic 60.0%
AGGGTCTGCAGCCGCGATTA+TGG - chr4_2:25425318-25425337 None:intergenic 60.0%
!!! CGCGGCTGCAGACCCTTTTT+TGG + chr4_2:25425322-25425341 Msa0595920:intron 60.0%
! TACGGAGCACCACAGTGGCA+AGG - chr4_2:25426488-25426507 None:intergenic 60.0%
!! GGGAGTGGAGGTGCCAGCAA+GGG + chr4_2:25423298-25423317 Msa0595920:five_prime_UTR 65.0%
CGGTTGAAGGGTGGGAGGTG+TGG - chr4_2:25423464-25423483 None:intergenic 65.0%
! GGTGACGGCGGTTGAAGGGT+GGG - chr4_2:25423472-25423491 None:intergenic 65.0%
! TGGCGGTGACGGCGGTTGAA+GGG - chr4_2:25423476-25423495 None:intergenic 65.0%
! TTACGGGTTGCCGGTGGTGG+CGG - chr4_2:25423493-25423512 None:intergenic 65.0%
GTATTGGGGGTGGTGCGCAG+TGG + chr4_2:25426305-25426324 Msa0595920:intron 65.0%
GACGGCGGTTGAAGGGTGGG+AGG - chr4_2:25423469-25423488 None:intergenic 70.0%
! CGGTGACGGCGGTTGAAGGG+TGG - chr4_2:25423473-25423492 None:intergenic 70.0%
! GTGGCGGTGACGGCGGTTGA+AGG - chr4_2:25423477-25423496 None:intergenic 70.0%
!! GTTGCCGGTGGTGGCGGTGA+CGG - chr4_2:25423487-25423506 None:intergenic 70.0%
! CGGTTACGGGTTGCCGGTGG+TGG - chr4_2:25423496-25423515 None:intergenic 70.0%
ACCGCCGTCACCGCCACCAC+CGG + chr4_2:25423480-25423499 Msa0595920:CDS 75.0%
!!! GCCGGTGGTGGCGGTGACGG+CGG - chr4_2:25423484-25423503 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 25423298 25429116 25423298 ID=Msa0595920;Name=Msa0595920
chr4_2 mRNA 25423298 25429116 25423298 ID=Msa0595920-mRNA-1;Parent=Msa0595920;Name=Msa0595920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|0.5|0.6|5|450|248
chr4_2 exon 25423298 25423781 25423298 ID=Msa0595920-mRNA-1:exon:6824;Parent=Msa0595920-mRNA-1
chr4_2 exon 25423883 25423936 25423883 ID=Msa0595920-mRNA-1:exon:6825;Parent=Msa0595920-mRNA-1
chr4_2 exon 25427697 25427822 25427697 ID=Msa0595920-mRNA-1:exon:6826;Parent=Msa0595920-mRNA-1
chr4_2 exon 25428458 25428997 25428458 ID=Msa0595920-mRNA-1:exon:6827;Parent=Msa0595920-mRNA-1
chr4_2 exon 25429021 25429116 25429021 ID=Msa0595920-mRNA-1:exon:6828;Parent=Msa0595920-mRNA-1
chr4_2 five_prime_UTR 25423298 25423400 25423298 ID=Msa0595920-mRNA-1:five_prime_utr;Parent=Msa0595920-mRNA-1
chr4_2 CDS 25423401 25423781 25423401 ID=Msa0595920-mRNA-1:cds;Parent=Msa0595920-mRNA-1
chr4_2 CDS 25423883 25423936 25423883 ID=Msa0595920-mRNA-1:cds;Parent=Msa0595920-mRNA-1
chr4_2 CDS 25427697 25427822 25427697 ID=Msa0595920-mRNA-1:cds;Parent=Msa0595920-mRNA-1
chr4_2 CDS 25428458 25428643 25428458 ID=Msa0595920-mRNA-1:cds;Parent=Msa0595920-mRNA-1
chr4_2 three_prime_UTR 25428644 25428997 25428644 ID=Msa0595920-mRNA-1:three_prime_utr;Parent=Msa0595920-mRNA-1
chr4_2 three_prime_UTR 25429021 25429116 25429021 ID=Msa0595920-mRNA-1:three_prime_utr;Parent=Msa0595920-mRNA-1
Gene Sequence

>Msa0595920

ATGTTCACAATGACAAACACATGCACAGGAACATCACTCCGATATCAACAACAACAACAACCACACCTCCCACCCTTCAACCGCCGTCACCGCCACCACCGGCAACCCGTAACCGTTTCATTCAAGAACAACAACAATAAACCAAATGATATGGATAGGGTTTTGAAAGAAGCGTGGCAAAACGCAAACGATGGTTTTGAGCGGTTATTATTTGAAGCTAAGAAAACTGCTGAAAGGATTGACCGTCAGTATTCCGTGTCTAAACGTCTTGCTTCTGTTGCTTCTGCTGCTGCTGATAGAGCTCGTGAAATTGATCGTGATTTTGAAATTGGTGTTAAATATCGGAACTTTTCTTCCGATTTTGCCCTTAACTGGCCTAGGTATAGGATGCAGATTAGTAAATTTTTGGATAGCCCAGTTGGGAAAAGCTTTACGACAATTTTCTTCATCTGGTTTGCATTCTCTGGCTGGCTTTTTCGGTTCCTGATAATCGCTACATGGGTACTTCCATTTGCTGGACCTCTTCTAATTGGGACATTGGCCAACAGCTTAGTTATCAAGGGCTCTTGTCCAAATTGCAAGACACAATTTGCCGGTTACAAGAATCAAGTAGTTCGATGTACAAGATGTGGCAACACTGTGTGGCAACCTAAAGGCAAAGGGGATTTCTTTACAAGAGGCGGTAGAAATAACTCGTCATCGAAGTCAGACCCCAACATCATTGATGTTGACTTTGAGGAGAAATGA
Protein sequence

>Msa0595920

MFTMTNTCTGTSLRYQQQQQPHLPPFNRRHRHHRQPVTVSFKNNNNKPNDMDRVLKEAWQNANDGFERLLFEAKKTAERIDRQYSVSKRLASVASAAADRAREIDRDFEIGVKYRNFSSDFALNWPRYRMQISKFLDSPVGKSFTTIFFIWFAFSGWLFRFLIIATWVLPFAGPLLIGTLANSLVIKGSCPNCKTQFAGYKNQVVRCTRCGNTVWQPKGKGDFFTRGGRNNSSSKSDPNIIDVDFEEK*