AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369430 MtrunA17_Chr3g0113711 94.805 231 12 0 1 231 1 231 1.13e-161 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369430 AT3G56010.1 57.778 135 45 4 99 231 77 201 1.98e-47 155

Find 72 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATGGACATGAAATTTA+AGG 0.175869 3_1:-66644279 None:intergenic
GAATAGCTGATTTATATATT+TGG 0.179692 3_1:+66644245 Msa0369430:three_prime_UTR
CATCTCATTAGTCATTAAAA+TGG 0.237690 3_1:-66644188 None:intergenic
AACAAATTACCAGGGGCTTC+TGG 0.243956 3_1:-66644018 None:intergenic
TTCAACAGATGCTAGTAATA+AGG 0.322512 3_1:+66643711 Msa0369430:CDS
TGAGATGATCGTGTGGTTAC+AGG 0.325931 3_1:-66643853 None:intergenic
TTTGTCAAGGAGAAAAGATT+TGG 0.326672 3_1:+66643655 Msa0369430:CDS
TGGTAGTTGGTACACAAAAT+AGG 0.353646 3_1:-66644518 None:intergenic
CTGAAAATGCTGCTATGTTA+TGG 0.360213 3_1:-66642489 None:intergenic
TTTATCAGCACAGTGATGTT+TGG 0.378545 3_1:+66644132 Msa0369430:CDS
GTGTGCTCTGAGTGGCCTTC+GGG 0.390366 3_1:-66643603 None:intergenic
AGAAAGTGAGAGAGAGGATA+AGG 0.396564 3_1:+66643875 Msa0369430:CDS
TAGTCAAAACTTACAATTGT+TGG 0.397714 3_1:+66644477 Msa0369430:three_prime_UTR
TCAAAAGTCCAACCTTCCTT+TGG 0.411926 3_1:-66644063 None:intergenic
AGTGTGCTCTGAGTGGCCTT+CGG 0.416107 3_1:-66643604 None:intergenic
AGTCAAAACTTACAATTGTT+GGG 0.416660 3_1:+66644478 Msa0369430:three_prime_UTR
GTCTGTGATTCTGCCTGAGC+AGG 0.422298 3_1:-66643787 None:intergenic
GTGGTTACAGGTTGCGACTT+AGG 0.426739 3_1:-66643841 None:intergenic
GGTAGATGTTAACTGATCAT+TGG 0.433318 3_1:-66643761 None:intergenic
ACTAATGAGATGAGATTTCA+AGG 0.437444 3_1:+66644199 Msa0369430:exon
CAAACTATCACGATGCATCT+AGG 0.448156 3_1:+66643560 Msa0369430:CDS
TCGACATTAACATCAATTCA+TGG 0.448507 3_1:-66644294 None:intergenic
CTGTCATCAAACAAATTACC+AGG 0.451100 3_1:-66644027 None:intergenic
GATGCTAGTAATAAGGATAC+TGG 0.451608 3_1:+66643718 Msa0369430:CDS
GGCCTTCGGGAAAGAAGCTC+CGG 0.457076 3_1:-66643590 None:intergenic
GAAAGTGAGAGAGAGGATAA+GGG 0.460702 3_1:+66643876 Msa0369430:CDS
TGATTCTGCCTGAGCAGGAT+TGG 0.469008 3_1:-66643782 None:intergenic
AAAACAGCTAAATCAGAAAT+GGG 0.480346 3_1:+66643931 Msa0369430:CDS
CGTTGAGGTGAAGCTGATGA+TGG 0.495454 3_1:-66642606 None:intergenic
GCAGATCCATTGGAAACCTC+TGG 0.503333 3_1:-66643811 None:intergenic
TGGAGAGATATTTGATTCAG+AGG 0.505324 3_1:+66644388 Msa0369430:three_prime_UTR
TTTGGTATTATTTCATTAGG+TGG 0.509257 3_1:+66644368 Msa0369430:three_prime_UTR
AACATCTACCAATCCTGCTC+AGG 0.512154 3_1:+66643774 Msa0369430:CDS
AGGAGATGCTGCAGATCCAT+TGG 0.516503 3_1:-66643821 None:intergenic
CTAGTAATAAGGATACTGGC+AGG 0.528322 3_1:+66643722 Msa0369430:CDS
TGCCGGAGCTTCTTTCCCGA+AGG 0.532920 3_1:+66643588 Msa0369430:CDS
TGTGTTTCAAAGACCAGCCA+TGG 0.534784 3_1:-66642544 None:intergenic
CATTGTATATCATATTCACT+AGG 0.536095 3_1:-66644417 None:intergenic
ACTTACATTGTGTGGAAAGT+TGG 0.543190 3_1:+66644159 Msa0369430:CDS
ATTGTTATGCTATCCATGGC+TGG 0.546323 3_1:+66642531 Msa0369430:five_prime_UTR
TTGGAACAACTTACATTGTG+TGG 0.560213 3_1:+66644151 Msa0369430:CDS
AAACGAGGAGTCCTAGAGCT+TGG 0.564690 3_1:-66644538 None:intergenic
GAGGGATGCCAAAGGAAGGT+TGG 0.568563 3_1:+66644055 Msa0369430:CDS
GAAGATTGTTATGCTATCCA+TGG 0.571476 3_1:+66642527 Msa0369430:five_prime_UTR
CATCTCAGAAAGTGAGAGAG+AGG 0.580497 3_1:+66643869 Msa0369430:CDS
TGTACCAACTACCAAGCTCT+AGG 0.587624 3_1:+66644527 Msa0369430:three_prime_UTR
GTTGAGGTGAAGCTGATGAT+GGG 0.590259 3_1:-66642605 None:intergenic
GTTGGTACACAAAATAGGAC+AGG 0.591014 3_1:-66644513 None:intergenic
ACACTCGTTTCGATAACGTC+GGG 0.594355 3_1:+66643622 Msa0369430:CDS
TTGTTTGATGACAGCAAACG+AGG 0.599920 3_1:+66644036 Msa0369430:CDS
TCTGGACTTCCAGAAGCCCC+TGG 0.604678 3_1:+66644009 Msa0369430:CDS
GATGCATCTAGGTATTCTGC+CGG 0.605736 3_1:+66643571 Msa0369430:CDS
CACTTTCTGAGATGATCGTG+TGG 0.606839 3_1:-66643860 None:intergenic
GAGTCCTAGAGCTTGGTAGT+TGG 0.617030 3_1:-66644531 None:intergenic
AAACGAGGGATGCCAAAGGA+AGG 0.625366 3_1:+66644051 Msa0369430:CDS
TCGAGTTCTTAACCAGTCCA+AGG 0.632326 3_1:+66643903 Msa0369430:CDS
CATCATCAGCTTCACCTCAA+CGG 0.635332 3_1:+66642607 Msa0369430:CDS
TAGTAATAAGGATACTGGCA+GGG 0.635455 3_1:+66643723 Msa0369430:CDS
GGGAACAAGAATGTTTGTCA+AGG 0.643523 3_1:+66643642 Msa0369430:CDS
CAGCAAACGAGGGATGCCAA+AGG 0.649716 3_1:+66644047 Msa0369430:CDS
CAGACACCAGAGGTTTCCAA+TGG 0.649775 3_1:+66643805 Msa0369430:CDS
AGAAAGAGATCAGAACCACC+AGG 0.655199 3_1:-66644090 None:intergenic
TGTTTGATGACAGCAAACGA+GGG 0.666281 3_1:+66644037 Msa0369430:CDS
AGAAATGGGAAGTAGTGTGT+TGG 0.668878 3_1:+66643945 Msa0369430:CDS
CACACTCGTTTCGATAACGT+CGG 0.679278 3_1:+66643621 Msa0369430:CDS
GGCAGAATCACAGACACCAG+AGG 0.679651 3_1:+66643795 Msa0369430:CDS
TGTCATCAAACAAATTACCA+GGG 0.683437 3_1:-66644026 None:intergenic
AGTGAGAGAGAGGATAAGGG+CGG 0.687543 3_1:+66643879 Msa0369430:CDS
TTGAGGTGAAGCTGATGATG+GGG 0.696015 3_1:-66642604 None:intergenic
GTCATCAAACAAATTACCAG+GGG 0.699685 3_1:-66644025 None:intergenic
CGAAACGAGTGTGCTCTGAG+TGG 0.707929 3_1:-66643611 None:intergenic
GGGATTATTGTATCAAAACG+AGG 0.720600 3_1:-66644553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATCAAATCAAATAAAAA+TGG + chr3_1:66642568-66642587 Msa0369430:exon 10.0%
!!! TTTTTTACTCTTATTATTTT+TGG + chr3_1:66644350-66644369 Msa0369430:three_prime_UTR 10.0%
!! TAAATCAAATCAAATAAAAA+TGG + chr3_1:66642568-66642587 Msa0369430:exon 10.0%
!!! TTTTTTACTCTTATTATTTT+TGG + chr3_1:66644350-66644369 Msa0369430:three_prime_UTR 10.0%
!! ATTATCTTCTAATATGTAAT+AGG + chr3_1:66643415-66643434 Msa0369430:intron 15.0%
!! ACATAATTGAATTATATTGA+AGG - chr3_1:66643475-66643494 None:intergenic 15.0%
!!! ATTTTTGGTATTATTTCATT+AGG + chr3_1:66644365-66644384 Msa0369430:three_prime_UTR 15.0%
!! ATTATCTTCTAATATGTAAT+AGG + chr3_1:66643415-66643434 Msa0369430:intron 15.0%
!! ACATAATTGAATTATATTGA+AGG - chr3_1:66643475-66643494 None:intergenic 15.0%
!!! ATTTTTGGTATTATTTCATT+AGG + chr3_1:66644365-66644384 Msa0369430:three_prime_UTR 15.0%
!! TGTAAAAAGTAACAAATATG+TGG - chr3_1:66642688-66642707 None:intergenic 20.0%
!! GTAACAAGTTTATAGATTTA+AGG + chr3_1:66642710-66642729 Msa0369430:intron 20.0%
!!! AGTTTATAGATTTAAGGTTA+TGG + chr3_1:66642716-66642735 Msa0369430:intron 20.0%
!! ATACTAAACATTATTTGACT+TGG + chr3_1:66642801-66642820 Msa0369430:intron 20.0%
!!! TACTAAACATTATTTGACTT+GGG + chr3_1:66642802-66642821 Msa0369430:intron 20.0%
!! AGGAAATATGACTATTTAAA+GGG - chr3_1:66643134-66643153 None:intergenic 20.0%
!! AAGGAAATATGACTATTTAA+AGG - chr3_1:66643135-66643154 None:intergenic 20.0%
!!! GAATAGCTGATTTATATATT+TGG + chr3_1:66644245-66644264 Msa0369430:three_prime_UTR 20.0%
!! TGTAAAAAGTAACAAATATG+TGG - chr3_1:66642688-66642707 None:intergenic 20.0%
!! GTAACAAGTTTATAGATTTA+AGG + chr3_1:66642710-66642729 Msa0369430:intron 20.0%
!!! AGTTTATAGATTTAAGGTTA+TGG + chr3_1:66642716-66642735 Msa0369430:intron 20.0%
!! ATACTAAACATTATTTGACT+TGG + chr3_1:66642801-66642820 Msa0369430:intron 20.0%
!!! TACTAAACATTATTTGACTT+GGG + chr3_1:66642802-66642821 Msa0369430:intron 20.0%
!! AGGAAATATGACTATTTAAA+GGG - chr3_1:66643134-66643153 None:intergenic 20.0%
!! AAGGAAATATGACTATTTAA+AGG - chr3_1:66643135-66643154 None:intergenic 20.0%
!!! GAATAGCTGATTTATATATT+TGG + chr3_1:66644245-66644264 Msa0369430:three_prime_UTR 20.0%
!! ATTTGCTTGTAATTGATTCT+TGG + chr3_1:66642772-66642791 Msa0369430:intron 25.0%
! TAACAACGTGTTATGTTAAT+CGG + chr3_1:66642872-66642891 Msa0369430:intron 25.0%
! TTAACATAAAGCAATTTCAC+TGG - chr3_1:66642939-66642958 None:intergenic 25.0%
! TATAAAATGCGCTATATCTA+TGG + chr3_1:66642959-66642978 Msa0369430:intron 25.0%
!!! GGTGAAATTTATTGATTCAA+TGG + chr3_1:66643069-66643088 Msa0369430:intron 25.0%
! TATTTAAAGGGCTAATTCTA+CGG - chr3_1:66643122-66643141 None:intergenic 25.0%
! TAAATAGTCATATTTCCTTG+TGG + chr3_1:66643136-66643155 Msa0369430:intron 25.0%
!!! TTGTTTGATGATGAAAATGT+TGG + chr3_1:66643323-66643342 Msa0369430:intron 25.0%
!! TCCCTTTTATATGTCAATTT+TGG + chr3_1:66643370-66643389 Msa0369430:intron 25.0%
! CCCAAAATTGACATATAAAA+GGG - chr3_1:66643374-66643393 None:intergenic 25.0%
!! CCCTTTTATATGTCAATTTT+GGG + chr3_1:66643371-66643390 Msa0369430:intron 25.0%
! TCCCAAAATTGACATATAAA+AGG - chr3_1:66643375-66643394 None:intergenic 25.0%
!!! ATTTCTGATTTAGCTGTTTT+TGG - chr3_1:66643931-66643950 None:intergenic 25.0%
! AAAAACAGCTAAATCAGAAA+TGG + chr3_1:66643930-66643949 Msa0369430:CDS 25.0%
! AAAACAGCTAAATCAGAAAT+GGG + chr3_1:66643931-66643950 Msa0369430:CDS 25.0%
!!! CTTTTAAAGAAAGTAACAGA+GGG + chr3_1:66643971-66643990 Msa0369430:CDS 25.0%
! CATCTCATTAGTCATTAAAA+TGG - chr3_1:66644191-66644210 None:intergenic 25.0%
! ATTCATGGACATGAAATTTA+AGG - chr3_1:66644282-66644301 None:intergenic 25.0%
! TTTGGTATTATTTCATTAGG+TGG + chr3_1:66644368-66644387 Msa0369430:three_prime_UTR 25.0%
! CATTGTATATCATATTCACT+AGG - chr3_1:66644420-66644439 None:intergenic 25.0%
! TAGTCAAAACTTACAATTGT+TGG + chr3_1:66644477-66644496 Msa0369430:three_prime_UTR 25.0%
! AGTCAAAACTTACAATTGTT+GGG + chr3_1:66644478-66644497 Msa0369430:three_prime_UTR 25.0%
!! ATTTGCTTGTAATTGATTCT+TGG + chr3_1:66642772-66642791 Msa0369430:intron 25.0%
! TAACAACGTGTTATGTTAAT+CGG + chr3_1:66642872-66642891 Msa0369430:intron 25.0%
! TTAACATAAAGCAATTTCAC+TGG - chr3_1:66642939-66642958 None:intergenic 25.0%
! TATAAAATGCGCTATATCTA+TGG + chr3_1:66642959-66642978 Msa0369430:intron 25.0%
!!! GGTGAAATTTATTGATTCAA+TGG + chr3_1:66643069-66643088 Msa0369430:intron 25.0%
! TATTTAAAGGGCTAATTCTA+CGG - chr3_1:66643122-66643141 None:intergenic 25.0%
! TAAATAGTCATATTTCCTTG+TGG + chr3_1:66643136-66643155 Msa0369430:intron 25.0%
!!! TTGTTTGATGATGAAAATGT+TGG + chr3_1:66643323-66643342 Msa0369430:intron 25.0%
!! TCCCTTTTATATGTCAATTT+TGG + chr3_1:66643370-66643389 Msa0369430:intron 25.0%
! CCCAAAATTGACATATAAAA+GGG - chr3_1:66643374-66643393 None:intergenic 25.0%
!! CCCTTTTATATGTCAATTTT+GGG + chr3_1:66643371-66643390 Msa0369430:intron 25.0%
! TCCCAAAATTGACATATAAA+AGG - chr3_1:66643375-66643394 None:intergenic 25.0%
!!! ATTTCTGATTTAGCTGTTTT+TGG - chr3_1:66643931-66643950 None:intergenic 25.0%
! AAAAACAGCTAAATCAGAAA+TGG + chr3_1:66643930-66643949 Msa0369430:CDS 25.0%
! AAAACAGCTAAATCAGAAAT+GGG + chr3_1:66643931-66643950 Msa0369430:CDS 25.0%
!!! CTTTTAAAGAAAGTAACAGA+GGG + chr3_1:66643971-66643990 Msa0369430:CDS 25.0%
! CATCTCATTAGTCATTAAAA+TGG - chr3_1:66644191-66644210 None:intergenic 25.0%
! ATTCATGGACATGAAATTTA+AGG - chr3_1:66644282-66644301 None:intergenic 25.0%
! TTTGGTATTATTTCATTAGG+TGG + chr3_1:66644368-66644387 Msa0369430:three_prime_UTR 25.0%
! CATTGTATATCATATTCACT+AGG - chr3_1:66644420-66644439 None:intergenic 25.0%
! TAGTCAAAACTTACAATTGT+TGG + chr3_1:66644477-66644496 Msa0369430:three_prime_UTR 25.0%
! AGTCAAAACTTACAATTGTT+GGG + chr3_1:66644478-66644497 Msa0369430:three_prime_UTR 25.0%
! TAAGAAGAGTGTGTAAGTTA+TGG + chr3_1:66642739-66642758 Msa0369430:intron 30.0%
ATCTCAATTGATCCAATTGA+AGG - chr3_1:66643047-66643066 None:intergenic 30.0%
CAATTGGATCAATTGAGATA+TGG + chr3_1:66643048-66643067 Msa0369430:intron 30.0%
TTTCATTATCCCTTAGAAGT+TGG + chr3_1:66643534-66643553 Msa0369430:intron 30.0%
! AGTTTGTTTCCAACTTCTAA+GGG - chr3_1:66643546-66643565 None:intergenic 30.0%
!! TAGTTTGTTTCCAACTTCTA+AGG - chr3_1:66643547-66643566 None:intergenic 30.0%
TTTGTCAAGGAGAAAAGATT+TGG + chr3_1:66643655-66643674 Msa0369430:CDS 30.0%
CACTATTTGCAACTGAAAAA+CGG - chr3_1:66643684-66643703 None:intergenic 30.0%
TTCAACAGATGCTAGTAATA+AGG + chr3_1:66643711-66643730 Msa0369430:CDS 30.0%
!! GCTTTTAAAGAAAGTAACAG+AGG + chr3_1:66643970-66643989 Msa0369430:CDS 30.0%
TGTCATCAAACAAATTACCA+GGG - chr3_1:66644029-66644048 None:intergenic 30.0%
ACTAATGAGATGAGATTTCA+AGG + chr3_1:66644199-66644218 Msa0369430:exon 30.0%
TCGACATTAACATCAATTCA+TGG - chr3_1:66644297-66644316 None:intergenic 30.0%
!!! TGTCGAGTTTTTTGCTTTTT+AGG + chr3_1:66644311-66644330 Msa0369430:three_prime_UTR 30.0%
!!! GTTTTGACTAAACAACTACA+AGG - chr3_1:66644467-66644486 None:intergenic 30.0%
!! TCCTCGTTTTGATACAATAA+TGG + chr3_1:66644552-66644571 Msa0369430:three_prime_UTR 30.0%
! TAAGAAGAGTGTGTAAGTTA+TGG + chr3_1:66642739-66642758 Msa0369430:intron 30.0%
ATCTCAATTGATCCAATTGA+AGG - chr3_1:66643047-66643066 None:intergenic 30.0%
CAATTGGATCAATTGAGATA+TGG + chr3_1:66643048-66643067 Msa0369430:intron 30.0%
TTTCATTATCCCTTAGAAGT+TGG + chr3_1:66643534-66643553 Msa0369430:intron 30.0%
! AGTTTGTTTCCAACTTCTAA+GGG - chr3_1:66643546-66643565 None:intergenic 30.0%
!! TAGTTTGTTTCCAACTTCTA+AGG - chr3_1:66643547-66643566 None:intergenic 30.0%
TTTGTCAAGGAGAAAAGATT+TGG + chr3_1:66643655-66643674 Msa0369430:CDS 30.0%
CACTATTTGCAACTGAAAAA+CGG - chr3_1:66643684-66643703 None:intergenic 30.0%
TTCAACAGATGCTAGTAATA+AGG + chr3_1:66643711-66643730 Msa0369430:CDS 30.0%
!! GCTTTTAAAGAAAGTAACAG+AGG + chr3_1:66643970-66643989 Msa0369430:CDS 30.0%
TGTCATCAAACAAATTACCA+GGG - chr3_1:66644029-66644048 None:intergenic 30.0%
ACTAATGAGATGAGATTTCA+AGG + chr3_1:66644199-66644218 Msa0369430:exon 30.0%
TCGACATTAACATCAATTCA+TGG - chr3_1:66644297-66644316 None:intergenic 30.0%
!!! TGTCGAGTTTTTTGCTTTTT+AGG + chr3_1:66644311-66644330 Msa0369430:three_prime_UTR 30.0%
!!! GTTTTGACTAAACAACTACA+AGG - chr3_1:66644467-66644486 None:intergenic 30.0%
CTGAAAATGCTGCTATGTTA+TGG - chr3_1:66642492-66642511 None:intergenic 35.0%
GAAGATTGTTATGCTATCCA+TGG + chr3_1:66642527-66642546 Msa0369430:five_prime_UTR 35.0%
TTAATCGGACACAATATTCC+TGG + chr3_1:66642887-66642906 Msa0369430:intron 35.0%
TAATCGGACACAATATTCCT+GGG + chr3_1:66642888-66642907 Msa0369430:intron 35.0%
TGAAGGACTTACTGATCAAA+TGG - chr3_1:66643030-66643049 None:intergenic 35.0%
TGATCAGTAAGTCCTTCAAT+TGG + chr3_1:66643032-66643051 Msa0369430:intron 35.0%
TTTCCTTGTGGATCTTTGTT+AGG + chr3_1:66643148-66643167 Msa0369430:intron 35.0%
CTTTGCAGTTATGTTGTGAT+CGG + chr3_1:66643272-66643291 Msa0369430:intron 35.0%
GATGCTAGTAATAAGGATAC+TGG + chr3_1:66643718-66643737 Msa0369430:CDS 35.0%
TAGTAATAAGGATACTGGCA+GGG + chr3_1:66643723-66643742 Msa0369430:CDS 35.0%
GGTAGATGTTAACTGATCAT+TGG - chr3_1:66643764-66643783 None:intergenic 35.0%
!!! TTTAGCTGTTTTTGGTTCCT+TGG - chr3_1:66643923-66643942 None:intergenic 35.0%
AAAGTAACAGAGGGAAAAAG+AGG + chr3_1:66643980-66643999 Msa0369430:CDS 35.0%
GTCATCAAACAAATTACCAG+GGG - chr3_1:66644028-66644047 None:intergenic 35.0%
CTGTCATCAAACAAATTACC+AGG - chr3_1:66644030-66644049 None:intergenic 35.0%
TTTATCAGCACAGTGATGTT+TGG + chr3_1:66644132-66644151 Msa0369430:CDS 35.0%
TTGGAACAACTTACATTGTG+TGG + chr3_1:66644151-66644170 Msa0369430:CDS 35.0%
ACTTACATTGTGTGGAAAGT+TGG + chr3_1:66644159-66644178 Msa0369430:CDS 35.0%
TGGAGAGATATTTGATTCAG+AGG + chr3_1:66644388-66644407 Msa0369430:three_prime_UTR 35.0%
! TGGTAGTTGGTACACAAAAT+AGG - chr3_1:66644521-66644540 None:intergenic 35.0%
CTGAAAATGCTGCTATGTTA+TGG - chr3_1:66642492-66642511 None:intergenic 35.0%
GAAGATTGTTATGCTATCCA+TGG + chr3_1:66642527-66642546 Msa0369430:five_prime_UTR 35.0%
TTAATCGGACACAATATTCC+TGG + chr3_1:66642887-66642906 Msa0369430:intron 35.0%
TAATCGGACACAATATTCCT+GGG + chr3_1:66642888-66642907 Msa0369430:intron 35.0%
TGAAGGACTTACTGATCAAA+TGG - chr3_1:66643030-66643049 None:intergenic 35.0%
TGATCAGTAAGTCCTTCAAT+TGG + chr3_1:66643032-66643051 Msa0369430:intron 35.0%
TTTCCTTGTGGATCTTTGTT+AGG + chr3_1:66643148-66643167 Msa0369430:intron 35.0%
CTTTGCAGTTATGTTGTGAT+CGG + chr3_1:66643272-66643291 Msa0369430:intron 35.0%
GATGCTAGTAATAAGGATAC+TGG + chr3_1:66643718-66643737 Msa0369430:CDS 35.0%
TAGTAATAAGGATACTGGCA+GGG + chr3_1:66643723-66643742 Msa0369430:CDS 35.0%
GGTAGATGTTAACTGATCAT+TGG - chr3_1:66643764-66643783 None:intergenic 35.0%
!!! TTTAGCTGTTTTTGGTTCCT+TGG - chr3_1:66643923-66643942 None:intergenic 35.0%
AAAGTAACAGAGGGAAAAAG+AGG + chr3_1:66643980-66643999 Msa0369430:CDS 35.0%
GTCATCAAACAAATTACCAG+GGG - chr3_1:66644028-66644047 None:intergenic 35.0%
CTGTCATCAAACAAATTACC+AGG - chr3_1:66644030-66644049 None:intergenic 35.0%
TTTATCAGCACAGTGATGTT+TGG + chr3_1:66644132-66644151 Msa0369430:CDS 35.0%
TTGGAACAACTTACATTGTG+TGG + chr3_1:66644151-66644170 Msa0369430:CDS 35.0%
ACTTACATTGTGTGGAAAGT+TGG + chr3_1:66644159-66644178 Msa0369430:CDS 35.0%
TGGAGAGATATTTGATTCAG+AGG + chr3_1:66644388-66644407 Msa0369430:three_prime_UTR 35.0%
! TGGTAGTTGGTACACAAAAT+AGG - chr3_1:66644521-66644540 None:intergenic 35.0%
! AGCAGCATTTTCAGTCTTAG+CGG + chr3_1:66642498-66642517 Msa0369430:five_prime_UTR 40.0%
! TTTTCAGTCTTAGCGGTAAG+AGG + chr3_1:66642505-66642524 Msa0369430:five_prime_UTR 40.0%
ATTGTTATGCTATCCATGGC+TGG + chr3_1:66642531-66642550 Msa0369430:five_prime_UTR 40.0%
GATAGAAAAACGTACCGTTG+AGG - chr3_1:66642624-66642643 None:intergenic 40.0%
CTATCATAAGAAGTTCACCC+AGG - chr3_1:66642908-66642927 None:intergenic 40.0%
CTATGGTGCACATGTTAAGT+AGG + chr3_1:66642976-66642995 Msa0369430:intron 40.0%
! GTTAAGTAGGTGCTGTACTA+TGG + chr3_1:66642989-66643008 Msa0369430:intron 40.0%
GAACCTAACAAAGATCCACA+AGG - chr3_1:66643154-66643173 None:intergenic 40.0%
GTGCATTAAACCAAAGTTCC+AGG + chr3_1:66643187-66643206 Msa0369430:intron 40.0%
CATTAAACCAAAGTTCCAGG+TGG + chr3_1:66643190-66643209 Msa0369430:intron 40.0%
CAAACTATCACGATGCATCT+AGG + chr3_1:66643560-66643579 Msa0369430:CDS 40.0%
GGGAACAAGAATGTTTGTCA+AGG + chr3_1:66643642-66643661 Msa0369430:CDS 40.0%
CTAGTAATAAGGATACTGGC+AGG + chr3_1:66643722-66643741 Msa0369430:CDS 40.0%
AGAAAGTGAGAGAGAGGATA+AGG + chr3_1:66643875-66643894 Msa0369430:CDS 40.0%
GAAAGTGAGAGAGAGGATAA+GGG + chr3_1:66643876-66643895 Msa0369430:CDS 40.0%
AGAAATGGGAAGTAGTGTGT+TGG + chr3_1:66643945-66643964 Msa0369430:CDS 40.0%
! TTGTTTGATGACAGCAAACG+AGG + chr3_1:66644036-66644055 Msa0369430:CDS 40.0%
! TGTTTGATGACAGCAAACGA+GGG + chr3_1:66644037-66644056 Msa0369430:CDS 40.0%
TCAAAAGTCCAACCTTCCTT+TGG - chr3_1:66644066-66644085 None:intergenic 40.0%
!!! GGTTGGACTTTTGATTTTCC+TGG + chr3_1:66644072-66644091 Msa0369430:CDS 40.0%
!!! TGGACTTTTGATTTTCCTGG+TGG + chr3_1:66644075-66644094 Msa0369430:CDS 40.0%
GTTGGTACACAAAATAGGAC+AGG - chr3_1:66644516-66644535 None:intergenic 40.0%
! AGCAGCATTTTCAGTCTTAG+CGG + chr3_1:66642498-66642517 Msa0369430:five_prime_UTR 40.0%
! TTTTCAGTCTTAGCGGTAAG+AGG + chr3_1:66642505-66642524 Msa0369430:five_prime_UTR 40.0%
ATTGTTATGCTATCCATGGC+TGG + chr3_1:66642531-66642550 Msa0369430:five_prime_UTR 40.0%
GATAGAAAAACGTACCGTTG+AGG - chr3_1:66642624-66642643 None:intergenic 40.0%
CTATCATAAGAAGTTCACCC+AGG - chr3_1:66642908-66642927 None:intergenic 40.0%
CTATGGTGCACATGTTAAGT+AGG + chr3_1:66642976-66642995 Msa0369430:intron 40.0%
! GTTAAGTAGGTGCTGTACTA+TGG + chr3_1:66642989-66643008 Msa0369430:intron 40.0%
GAACCTAACAAAGATCCACA+AGG - chr3_1:66643154-66643173 None:intergenic 40.0%
GTGCATTAAACCAAAGTTCC+AGG + chr3_1:66643187-66643206 Msa0369430:intron 40.0%
CATTAAACCAAAGTTCCAGG+TGG + chr3_1:66643190-66643209 Msa0369430:intron 40.0%
CAAACTATCACGATGCATCT+AGG + chr3_1:66643560-66643579 Msa0369430:CDS 40.0%
GGGAACAAGAATGTTTGTCA+AGG + chr3_1:66643642-66643661 Msa0369430:CDS 40.0%
CTAGTAATAAGGATACTGGC+AGG + chr3_1:66643722-66643741 Msa0369430:CDS 40.0%
AGAAAGTGAGAGAGAGGATA+AGG + chr3_1:66643875-66643894 Msa0369430:CDS 40.0%
GAAAGTGAGAGAGAGGATAA+GGG + chr3_1:66643876-66643895 Msa0369430:CDS 40.0%
AGAAATGGGAAGTAGTGTGT+TGG + chr3_1:66643945-66643964 Msa0369430:CDS 40.0%
! TTGTTTGATGACAGCAAACG+AGG + chr3_1:66644036-66644055 Msa0369430:CDS 40.0%
! TGTTTGATGACAGCAAACGA+GGG + chr3_1:66644037-66644056 Msa0369430:CDS 40.0%
TCAAAAGTCCAACCTTCCTT+TGG - chr3_1:66644066-66644085 None:intergenic 40.0%
!!! GGTTGGACTTTTGATTTTCC+TGG + chr3_1:66644072-66644091 Msa0369430:CDS 40.0%
!!! TGGACTTTTGATTTTCCTGG+TGG + chr3_1:66644075-66644094 Msa0369430:CDS 40.0%
GTTGGTACACAAAATAGGAC+AGG - chr3_1:66644516-66644535 None:intergenic 40.0%
TGTGTTTCAAAGACCAGCCA+TGG - chr3_1:66642547-66642566 None:intergenic 45.0%
! TTGAGGTGAAGCTGATGATG+GGG - chr3_1:66642607-66642626 None:intergenic 45.0%
GTTGAGGTGAAGCTGATGAT+GGG - chr3_1:66642608-66642627 None:intergenic 45.0%
CATCATCAGCTTCACCTCAA+CGG + chr3_1:66642607-66642626 Msa0369430:CDS 45.0%
AGAAAGTCCACCTGGAACTT+TGG - chr3_1:66643200-66643219 None:intergenic 45.0%
! CATTCTAGAGAAAGTCCACC+TGG - chr3_1:66643208-66643227 None:intergenic 45.0%
GATGCATCTAGGTATTCTGC+CGG + chr3_1:66643571-66643590 Msa0369430:CDS 45.0%
CACACTCGTTTCGATAACGT+CGG + chr3_1:66643621-66643640 Msa0369430:CDS 45.0%
ACACTCGTTTCGATAACGTC+GGG + chr3_1:66643622-66643641 Msa0369430:CDS 45.0%
AACATCTACCAATCCTGCTC+AGG + chr3_1:66643774-66643793 Msa0369430:CDS 45.0%
TGAGATGATCGTGTGGTTAC+AGG - chr3_1:66643856-66643875 None:intergenic 45.0%
!! CACTTTCTGAGATGATCGTG+TGG - chr3_1:66643863-66643882 None:intergenic 45.0%
CATCTCAGAAAGTGAGAGAG+AGG + chr3_1:66643869-66643888 Msa0369430:CDS 45.0%
TCGAGTTCTTAACCAGTCCA+AGG + chr3_1:66643903-66643922 Msa0369430:CDS 45.0%
!!! CTGTTTTTGGTTCCTTGGAC+TGG - chr3_1:66643918-66643937 None:intergenic 45.0%
GGGAAAAAGAGGAGAAGATC+TGG + chr3_1:66643991-66644010 Msa0369430:CDS 45.0%
AACAAATTACCAGGGGCTTC+TGG - chr3_1:66644021-66644040 None:intergenic 45.0%
AGAAAGAGATCAGAACCACC+AGG - chr3_1:66644093-66644112 None:intergenic 45.0%
TGTACCAACTACCAAGCTCT+AGG + chr3_1:66644527-66644546 Msa0369430:three_prime_UTR 45.0%
TGTGTTTCAAAGACCAGCCA+TGG - chr3_1:66642547-66642566 None:intergenic 45.0%
! TTGAGGTGAAGCTGATGATG+GGG - chr3_1:66642607-66642626 None:intergenic 45.0%
GTTGAGGTGAAGCTGATGAT+GGG - chr3_1:66642608-66642627 None:intergenic 45.0%
CATCATCAGCTTCACCTCAA+CGG + chr3_1:66642607-66642626 Msa0369430:CDS 45.0%
AGAAAGTCCACCTGGAACTT+TGG - chr3_1:66643200-66643219 None:intergenic 45.0%
! CATTCTAGAGAAAGTCCACC+TGG - chr3_1:66643208-66643227 None:intergenic 45.0%
GATGCATCTAGGTATTCTGC+CGG + chr3_1:66643571-66643590 Msa0369430:CDS 45.0%
CACACTCGTTTCGATAACGT+CGG + chr3_1:66643621-66643640 Msa0369430:CDS 45.0%
ACACTCGTTTCGATAACGTC+GGG + chr3_1:66643622-66643641 Msa0369430:CDS 45.0%
AACATCTACCAATCCTGCTC+AGG + chr3_1:66643774-66643793 Msa0369430:CDS 45.0%
TGAGATGATCGTGTGGTTAC+AGG - chr3_1:66643856-66643875 None:intergenic 45.0%
!! CACTTTCTGAGATGATCGTG+TGG - chr3_1:66643863-66643882 None:intergenic 45.0%
CATCTCAGAAAGTGAGAGAG+AGG + chr3_1:66643869-66643888 Msa0369430:CDS 45.0%
TCGAGTTCTTAACCAGTCCA+AGG + chr3_1:66643903-66643922 Msa0369430:CDS 45.0%
!!! CTGTTTTTGGTTCCTTGGAC+TGG - chr3_1:66643918-66643937 None:intergenic 45.0%
GGGAAAAAGAGGAGAAGATC+TGG + chr3_1:66643991-66644010 Msa0369430:CDS 45.0%
AACAAATTACCAGGGGCTTC+TGG - chr3_1:66644021-66644040 None:intergenic 45.0%
AGAAAGAGATCAGAACCACC+AGG - chr3_1:66644093-66644112 None:intergenic 45.0%
TGTACCAACTACCAAGCTCT+AGG + chr3_1:66644527-66644546 Msa0369430:three_prime_UTR 45.0%
CGTTGAGGTGAAGCTGATGA+TGG - chr3_1:66642609-66642628 None:intergenic 50.0%
TGATTCTGCCTGAGCAGGAT+TGG - chr3_1:66643785-66643804 None:intergenic 50.0%
CAGACACCAGAGGTTTCCAA+TGG + chr3_1:66643805-66643824 Msa0369430:CDS 50.0%
GCAGATCCATTGGAAACCTC+TGG - chr3_1:66643814-66643833 None:intergenic 50.0%
AGGAGATGCTGCAGATCCAT+TGG - chr3_1:66643824-66643843 None:intergenic 50.0%
GTGGTTACAGGTTGCGACTT+AGG - chr3_1:66643844-66643863 None:intergenic 50.0%
AGTGAGAGAGAGGATAAGGG+CGG + chr3_1:66643879-66643898 Msa0369430:CDS 50.0%
AAACGAGGGATGCCAAAGGA+AGG + chr3_1:66644051-66644070 Msa0369430:CDS 50.0%
! GAGTCCTAGAGCTTGGTAGT+TGG - chr3_1:66644534-66644553 None:intergenic 50.0%
AAACGAGGAGTCCTAGAGCT+TGG - chr3_1:66644541-66644560 None:intergenic 50.0%
CGTTGAGGTGAAGCTGATGA+TGG - chr3_1:66642609-66642628 None:intergenic 50.0%
TGATTCTGCCTGAGCAGGAT+TGG - chr3_1:66643785-66643804 None:intergenic 50.0%
CAGACACCAGAGGTTTCCAA+TGG + chr3_1:66643805-66643824 Msa0369430:CDS 50.0%
GCAGATCCATTGGAAACCTC+TGG - chr3_1:66643814-66643833 None:intergenic 50.0%
AGGAGATGCTGCAGATCCAT+TGG - chr3_1:66643824-66643843 None:intergenic 50.0%
GTGGTTACAGGTTGCGACTT+AGG - chr3_1:66643844-66643863 None:intergenic 50.0%
AGTGAGAGAGAGGATAAGGG+CGG + chr3_1:66643879-66643898 Msa0369430:CDS 50.0%
AAACGAGGGATGCCAAAGGA+AGG + chr3_1:66644051-66644070 Msa0369430:CDS 50.0%
! GAGTCCTAGAGCTTGGTAGT+TGG - chr3_1:66644534-66644553 None:intergenic 50.0%
AAACGAGGAGTCCTAGAGCT+TGG - chr3_1:66644541-66644560 None:intergenic 50.0%
! AGTGTGCTCTGAGTGGCCTT+CGG - chr3_1:66643607-66643626 None:intergenic 55.0%
! CGAAACGAGTGTGCTCTGAG+TGG - chr3_1:66643614-66643633 None:intergenic 55.0%
GTCTGTGATTCTGCCTGAGC+AGG - chr3_1:66643790-66643809 None:intergenic 55.0%
GGCAGAATCACAGACACCAG+AGG + chr3_1:66643795-66643814 Msa0369430:CDS 55.0%
CAGCAAACGAGGGATGCCAA+AGG + chr3_1:66644047-66644066 Msa0369430:CDS 55.0%
GAGGGATGCCAAAGGAAGGT+TGG + chr3_1:66644055-66644074 Msa0369430:CDS 55.0%
! AGTGTGCTCTGAGTGGCCTT+CGG - chr3_1:66643607-66643626 None:intergenic 55.0%
! CGAAACGAGTGTGCTCTGAG+TGG - chr3_1:66643614-66643633 None:intergenic 55.0%
GTCTGTGATTCTGCCTGAGC+AGG - chr3_1:66643790-66643809 None:intergenic 55.0%
GGCAGAATCACAGACACCAG+AGG + chr3_1:66643795-66643814 Msa0369430:CDS 55.0%
CAGCAAACGAGGGATGCCAA+AGG + chr3_1:66644047-66644066 Msa0369430:CDS 55.0%
GAGGGATGCCAAAGGAAGGT+TGG + chr3_1:66644055-66644074 Msa0369430:CDS 55.0%
TGCCGGAGCTTCTTTCCCGA+AGG + chr3_1:66643588-66643607 Msa0369430:CDS 60.0%
GGCCTTCGGGAAAGAAGCTC+CGG - chr3_1:66643593-66643612 None:intergenic 60.0%
! GTGTGCTCTGAGTGGCCTTC+GGG - chr3_1:66643606-66643625 None:intergenic 60.0%
TCTGGACTTCCAGAAGCCCC+TGG + chr3_1:66644009-66644028 Msa0369430:CDS 60.0%
TGCCGGAGCTTCTTTCCCGA+AGG + chr3_1:66643588-66643607 Msa0369430:CDS 60.0%
GGCCTTCGGGAAAGAAGCTC+CGG - chr3_1:66643593-66643612 None:intergenic 60.0%
! GTGTGCTCTGAGTGGCCTTC+GGG - chr3_1:66643606-66643625 None:intergenic 60.0%
TCTGGACTTCCAGAAGCCCC+TGG + chr3_1:66644009-66644028 Msa0369430:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 66642480 66644572 66642480 ID=Msa0369430;Name=Msa0369430
chr3_1 mRNA 66642480 66644572 66642480 ID=Msa0369430-mRNA-1;Parent=Msa0369430;Name=Msa0369430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|2|369|231
chr3_1 exon 66642480 66642628 66642480 ID=Msa0369430-mRNA-1:exon:13541;Parent=Msa0369430-mRNA-1
chr3_1 exon 66643550 66644572 66643550 ID=Msa0369430-mRNA-1:exon:13542;Parent=Msa0369430-mRNA-1
chr3_1 five_prime_UTR 66642480 66642586 66642480 ID=Msa0369430-mRNA-1:five_prime_utr;Parent=Msa0369430-mRNA-1
chr3_1 CDS 66642587 66642628 66642587 ID=Msa0369430-mRNA-1:cds;Parent=Msa0369430-mRNA-1
chr3_1 CDS 66643550 66644203 66643550 ID=Msa0369430-mRNA-1:cds;Parent=Msa0369430-mRNA-1
chr3_1 three_prime_UTR 66644204 66644572 66644204 ID=Msa0369430-mRNA-1:three_prime_utr;Parent=Msa0369430-mRNA-1
Gene Sequence

>Msa0369430

ATGGCTATATCTCTAAACCCCATCATCAGCTTCACCTCAACGAAGTTGGAAACAAACTATCACGATGCATCTAGGTATTCTGCCGGAGCTTCTTTCCCGAAGGCCACTCAGAGCACACTCGTTTCGATAACGTCGGGAACAAGAATGTTTGTCAAGGAGAAAAGATTTGGTCACCGTTTTTCAGTTGCAAATAGTGATCAACTTTCAACAGATGCTAGTAATAAGGATACTGGCAGGGCTGCAGATTCATCTGCCAATGATCAGTTAACATCTACCAATCCTGCTCAGGCAGAATCACAGACACCAGAGGTTTCCAATGGATCTGCAGCATCTCCTAAGTCGCAACCTGTAACCACACGATCATCTCAGAAAGTGAGAGAGAGGATAAGGGCGGCTCGAGTTCTTAACCAGTCCAAGGAACCAAAAACAGCTAAATCAGAAATGGGAAGTAGTGTGTTGGCTGCTTTTAAAGAAAGTAACAGAGGGAAAAAGAGGAGAAGATCTGGACTTCCAGAAGCCCCTGGTAATTTGTTTGATGACAGCAAACGAGGGATGCCAAAGGAAGGTTGGACTTTTGATTTTCCTGGTGGTTCTGATCTCTTTCTGATTATATTTTCTTTTGTCTTTATCAGCACAGTGATGTTTGGAACAACTTACATTGTGTGGAAAGTTGGTGCAATCCATTTTAATGACTAA

Protein sequence

>Msa0369430

MAISLNPIISFTSTKLETNYHDASRYSAGASFPKATQSTLVSITSGTRMFVKEKRFGHRFSVANSDQLSTDASNKDTGRAADSSANDQLTSTNPAQAESQTPEVSNGSAASPKSQPVTTRSSQKVRERIRAARVLNQSKEPKTAKSEMGSSVLAAFKESNRGKKRRRSGLPEAPGNLFDDSKRGMPKEGWTFDFPGGSDLFLIIFSFVFISTVMFGTTYIVWKVGAIHFND*