Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597660 | XP_013443636.1 | 89.100 | 1211 | 93 | 3 | 1 | 1175 | 1 | 1208 | 0.0 | 2104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597660 | sp|Q6Q1P4|SMC1_ARATH | 57.296 | 1213 | 474 | 7 | 4 | 1175 | 9 | 1218 | 0.0 | 1312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0597660 | Msa0989060 | 0.808023 | 3.795816e-50 | -8.615850e-47 |
| Msa0597660 | Msa1422180 | 0.815056 | 1.123865e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597660 | MtrunA17_Chr4g0020351 | 89.100 | 1211 | 93 | 3 | 1 | 1175 | 1 | 1208 | 0.0 | 2104 |
| Msa0597660 | MtrunA17_Chr1g0183871 | 71.498 | 614 | 137 | 4 | 599 | 1175 | 11 | 623 | 0.0 | 822 |
| Msa0597660 | MtrunA17_Chr1g0183861 | 70.297 | 606 | 173 | 4 | 2 | 603 | 6 | 608 | 0.0 | 766 |
| Msa0597660 | MtrunA17_Chr1g0178201 | 64.570 | 302 | 103 | 1 | 302 | 599 | 328 | 629 | 5.06e-114 | 370 |
| Msa0597660 | MtrunA17_Chr8g0352331 | 23.188 | 1242 | 767 | 43 | 6 | 1150 | 3 | 1154 | 7.55e-39 | 157 |
| Msa0597660 | MtrunA17_Chr8g0370091 | 33.014 | 209 | 121 | 2 | 957 | 1165 | 1032 | 1221 | 1.88e-29 | 127 |
| Msa0597660 | MtrunA17_Chr7g0257431 | 36.765 | 136 | 73 | 1 | 1030 | 1165 | 4 | 126 | 4.49e-24 | 99.4 |
| Msa0597660 | MtrunA17_Chr7g0257381 | 30.688 | 189 | 113 | 5 | 6 | 179 | 11 | 196 | 1.48e-18 | 85.5 |
| Msa0597660 | MtrunA17_Chr7g0257401 | 33.533 | 167 | 97 | 9 | 510 | 670 | 59 | 217 | 3.34e-13 | 70.9 |
| Msa0597660 | MtrunA17_Chr1g0178211 | 65.714 | 70 | 23 | 1 | 649 | 718 | 1 | 69 | 5.95e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597660 | AT3G54670.1 | 57.296 | 1213 | 474 | 7 | 4 | 1175 | 9 | 1218 | 0.0 | 1312 |
| Msa0597660 | AT3G47460.1 | 24.359 | 1248 | 742 | 48 | 6 | 1150 | 3 | 1151 | 9.53e-45 | 177 |
| Msa0597660 | AT3G47460.2 | 24.301 | 1251 | 742 | 48 | 6 | 1150 | 3 | 1154 | 3.84e-44 | 175 |
| Msa0597660 | AT5G62410.1 | 24.294 | 1239 | 757 | 43 | 6 | 1150 | 3 | 1154 | 3.40e-42 | 169 |
| Msa0597660 | AT5G48600.2 | 24.121 | 825 | 545 | 19 | 6 | 772 | 26 | 827 | 3.55e-40 | 162 |
| Msa0597660 | AT5G48600.2 | 32.857 | 210 | 122 | 2 | 957 | 1166 | 1042 | 1232 | 3.78e-31 | 133 |
| Msa0597660 | AT5G48600.1 | 32.857 | 210 | 122 | 2 | 957 | 1166 | 1039 | 1229 | 4.14e-31 | 133 |
Find 203 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGGTCCAGCTTAAAATTT+TGG | 0.143087 | 4_2:+30176521 | None:intergenic |
| GTCTCTCCTCTGCTGCATTT+TGG | 0.151763 | 4_2:+30175995 | None:intergenic |
| CCTCCGTGGTTCTCAATTAA+AGG | 0.176409 | 4_2:-30178218 | Msa0597660:CDS |
| TGTTTCAATGCCTTCAAATT+TGG | 0.177042 | 4_2:+30175446 | None:intergenic |
| TACGACATGGATCAACTTTC+TGG | 0.182893 | 4_2:-30175134 | Msa0597660:CDS |
| CGTTGCTATGGGTAAATTAA+TGG | 0.191276 | 4_2:-30176790 | Msa0597660:CDS |
| TGGAACAGCATACCTATATT+TGG | 0.222219 | 4_2:-30175222 | Msa0597660:CDS |
| CGTCAAAGCTCGCAATTTCT+TGG | 0.225100 | 4_2:-30177990 | Msa0597660:CDS |
| GGAAGATTCTTCAAATTTCT+TGG | 0.242859 | 4_2:+30176392 | None:intergenic |
| TGCTTTAAAGAATGACTTAA+AGG | 0.250570 | 4_2:-30175872 | Msa0597660:CDS |
| GACGCTATCTGCTTTGTTCT+TGG | 0.258289 | 4_2:-30178256 | Msa0597660:CDS |
| GAAGAAAGAACAAAAGAAAA+AGG | 0.263561 | 4_2:-30177777 | Msa0597660:CDS |
| TCGCAATTTCTTGGTCTTCC+AGG | 0.267745 | 4_2:-30177981 | Msa0597660:CDS |
| CGGAGAAGGGACCGATGATT+TGG | 0.271085 | 4_2:+30178329 | None:intergenic |
| CTATTTCAGACACTTTAATA+TGG | 0.278501 | 4_2:+30176310 | None:intergenic |
| TAGTGAAGCTCAAACTAATT+TGG | 0.293996 | 4_2:-30177171 | Msa0597660:CDS |
| GATTCAGTTTGATCCTTCTT+TGG | 0.295451 | 4_2:-30176601 | Msa0597660:CDS |
| TGAAGATCTTAAGGCGAAAA+TGG | 0.307178 | 4_2:-30177348 | Msa0597660:CDS |
| TCTCTTAACTTGATCAGTTC+TGG | 0.312964 | 4_2:+30176159 | None:intergenic |
| TATCTATGTTACCAGATATA+CGG | 0.314142 | 4_2:+30175288 | None:intergenic |
| GGAACGTATTGAGAAGTTAA+TGG | 0.320984 | 4_2:-30175687 | Msa0597660:CDS |
| ACCCGATGTTATCAAGTTAA+AGG | 0.322615 | 4_2:-30177483 | Msa0597660:CDS |
| CGAATTGAAATCTATGAAAA+AGG | 0.325156 | 4_2:-30177729 | Msa0597660:CDS |
| TTTGATTTACCAGCGCCATT+AGG | 0.326285 | 4_2:+30178286 | None:intergenic |
| GTAGAATAAAAGAGGAAGTT+AGG | 0.335771 | 4_2:-30177253 | Msa0597660:CDS |
| TCAGTAGGACACTAAGAAAT+AGG | 0.340041 | 4_2:-30175550 | Msa0597660:CDS |
| TTGATTTACCAGCGCCATTA+GGG | 0.350784 | 4_2:+30178287 | None:intergenic |
| AAAAGTAAAGTAAGTTCCTT+TGG | 0.351545 | 4_2:+30177929 | None:intergenic |
| GAACGTATTGAGAAGTTAAT+GGG | 0.354299 | 4_2:-30175686 | Msa0597660:CDS |
| GGTGCTTTCAACCGTATATC+TGG | 0.355800 | 4_2:-30175299 | Msa0597660:CDS |
| CAAAGCAGATAGCGTCCATT+AGG | 0.373551 | 4_2:+30178263 | None:intergenic |
| AGTTGGAGTATGAGCAAAAT+CGG | 0.375779 | 4_2:-30175936 | Msa0597660:CDS |
| CTCGGCTGCTAACTTTGCTT+CGG | 0.377748 | 4_2:+30175831 | None:intergenic |
| GGAGAGATATAATTTGTTCA+TGG | 0.384149 | 4_2:-30175321 | Msa0597660:CDS |
| AGATTATACTTCTTCTGTGT+TGG | 0.399676 | 4_2:+30176822 | None:intergenic |
| CGCAATTTCTTGGTCTTCCA+GGG | 0.400472 | 4_2:-30177980 | Msa0597660:CDS |
| GAGAGAGCTGTGTGTGTTGC+AGG | 0.401857 | 4_2:-30177033 | Msa0597660:CDS |
| CGCTGGTAAATCAAACCTAA+TGG | 0.404671 | 4_2:-30178278 | Msa0597660:CDS |
| GGGCAATTCTCTTTGCTGTT+GGG | 0.408231 | 4_2:-30176575 | Msa0597660:CDS |
| GCTTTAAAGAATGACTTAAA+GGG | 0.409233 | 4_2:-30175871 | Msa0597660:CDS |
| TCCTTTAACTTGATAACATC+GGG | 0.411307 | 4_2:+30177482 | None:intergenic |
| CGTTGAGGTTCTCCATTCAT+AGG | 0.413105 | 4_2:-30175085 | Msa0597660:intron |
| ACAGCCATCATCGGCCCTAA+TGG | 0.413636 | 4_2:-30178301 | Msa0597660:CDS |
| TTCAAAATTAAAATATCAGT+TGG | 0.414114 | 4_2:-30175953 | Msa0597660:CDS |
| TTCAACATTGAGCGATGAAA+AGG | 0.419132 | 4_2:-30176214 | Msa0597660:CDS |
| TCGACGGTAATGTGGTTACC+TGG | 0.425358 | 4_2:-30178051 | Msa0597660:CDS |
| GGAGAAGGGACCGATGATTT+GGG | 0.427285 | 4_2:+30178330 | None:intergenic |
| ACAAAGCTGACGTGTTAGTC+GGG | 0.427441 | 4_2:-30174635 | Msa0597660:CDS |
| TCGAAAGATTACGCTCGTTA+GGG | 0.427858 | 4_2:-30176650 | Msa0597660:CDS |
| AAGACTTCTGCAAATCAGTT+GGG | 0.428911 | 4_2:-30176062 | Msa0597660:CDS |
| AGAAAAGTATGAATCAAAGT+TGG | 0.429088 | 4_2:-30176361 | Msa0597660:CDS |
| AGGAAAAGGGTCGAAATGTT+GGG | 0.429424 | 4_2:-30177316 | Msa0597660:CDS |
| ATCGAAAGATTACGCTCGTT+AGG | 0.436737 | 4_2:-30176651 | Msa0597660:CDS |
| GAGTTCTCGAATTCAAGAAT+TGG | 0.437343 | 4_2:-30175908 | Msa0597660:CDS |
| AGGGCAATTCTCTTTGCTGT+TGG | 0.438745 | 4_2:-30176576 | Msa0597660:CDS |
| GCCGATGATGGCTGTGAAGC+CGG | 0.439827 | 4_2:+30178309 | None:intergenic |
| AATAACAGCACCAAATTTGA+AGG | 0.439952 | 4_2:-30175456 | Msa0597660:CDS |
| TGAACTACATGAATTGAAAT+CGG | 0.442434 | 4_2:-30176946 | Msa0597660:CDS |
| ATGGATACTGATAGCTCAAC+AGG | 0.443716 | 4_2:-30175596 | Msa0597660:CDS |
| CAAGAGAGAGTACGAGAAGT+TGG | 0.444711 | 4_2:-30177879 | Msa0597660:CDS |
| TCCAATCATATCAGATCCTA+TGG | 0.445708 | 4_2:-30175615 | Msa0597660:CDS |
| TATTAAAGTGTCTGAAATAG+AGG | 0.448340 | 4_2:-30176307 | Msa0597660:CDS |
| AATGGATGACGTAAAGGAAA+AGG | 0.450064 | 4_2:-30177330 | Msa0597660:CDS |
| CTTTGGATTTCTCGATGCAA+TGG | 0.455465 | 4_2:+30177946 | None:intergenic |
| ACGTTCTGCCTTGGTTCGCT+TGG | 0.455871 | 4_2:-30178149 | Msa0597660:CDS |
| ACTCTAAAACGCTTGTTTCA+AGG | 0.456559 | 4_2:-30176876 | Msa0597660:CDS |
| TTCGCGAGTATGAAGAAAAT+CGG | 0.458850 | 4_2:-30176029 | Msa0597660:CDS |
| GAAATAGGAAACACAGTGAC+AGG | 0.461699 | 4_2:-30175535 | Msa0597660:CDS |
| TTGAATCCAGCTCCGACTCC+CGG | 0.462317 | 4_2:+30177123 | None:intergenic |
| TTGTGAAGGTGTTGGTAAAG+AGG | 0.463113 | 4_2:-30177627 | Msa0597660:CDS |
| CAAAATCTTGTGAAGGAGAG+AGG | 0.463366 | 4_2:-30174728 | Msa0597660:CDS |
| GGAATTCTGCTGACACAGTC+TGG | 0.468140 | 4_2:-30176471 | Msa0597660:CDS |
| TCGAAATGTTGGGGTCGAAA+AGG | 0.469656 | 4_2:-30177306 | Msa0597660:CDS |
| CGCTTGATCTCACTAAATAC+CGG | 0.473757 | 4_2:-30174572 | Msa0597660:CDS |
| TACTTGATGCCATGTTGAAA+TGG | 0.476994 | 4_2:+30175185 | None:intergenic |
| AGAATATAGTAGAATAAAAG+AGG | 0.477378 | 4_2:-30177261 | Msa0597660:CDS |
| CAAATCATCGGTCCCTTCTC+CGG | 0.477655 | 4_2:-30178328 | Msa0597660:CDS |
| TCCATAGGATCTGATATGAT+TGG | 0.478350 | 4_2:+30175614 | None:intergenic |
| TCTAGCCGTTACCGTTGCTA+TGG | 0.480885 | 4_2:-30176802 | Msa0597660:CDS |
| ATTGAAACATTATGATTCCC+TGG | 0.482903 | 4_2:-30175432 | Msa0597660:CDS |
| CTGAAAACCCTTTCCATCAT+CGG | 0.484387 | 4_2:+30174692 | None:intergenic |
| CGCTTGTTTCAAGGAGTCCA+TGG | 0.490083 | 4_2:-30176867 | Msa0597660:CDS |
| GCAAGAACCATCACTGCAGC+AGG | 0.492129 | 4_2:-30178091 | Msa0597660:CDS |
| TAGATTCAATGCGGTTAAGC+AGG | 0.492151 | 4_2:-30175342 | Msa0597660:CDS |
| CAAACAACTCTACCTATGAA+TGG | 0.492953 | 4_2:+30175073 | None:intergenic |
| CGTAGAGGAATAAATGTCTT+GGG | 0.495869 | 4_2:+30176696 | None:intergenic |
| CGAAATGTTGGGGTCGAAAA+GGG | 0.496698 | 4_2:-30177305 | Msa0597660:CDS |
| CTGTTTCTCGCTGTCATCGA+AGG | 0.496893 | 4_2:+30178180 | None:intergenic |
| TGAACATGAAGCCAATGAAA+AGG | 0.497806 | 4_2:-30177594 | Msa0597660:CDS |
| AAGGAAAAGGGTCGAAATGT+TGG | 0.498778 | 4_2:-30177317 | Msa0597660:CDS |
| AGCGCCATTAGGGCCGATGA+TGG | 0.499199 | 4_2:+30178297 | None:intergenic |
| TCAACATTGAGCGATGAAAA+GGG | 0.502116 | 4_2:-30176213 | Msa0597660:CDS |
| GAAGAATGAACGTTCTGCCT+TGG | 0.502748 | 4_2:-30178158 | Msa0597660:CDS |
| ACAGCATCAAACCATGTCAC+TGG | 0.506557 | 4_2:-30178401 | None:intergenic |
| TTGAGAAGTTAATGGGGAAA+AGG | 0.506689 | 4_2:-30175679 | Msa0597660:CDS |
| TTGAGAACCACGGAGGTGAA+TGG | 0.508057 | 4_2:+30178225 | None:intergenic |
| TGAATGAAATTTAGGACTCC+CGG | 0.508193 | 4_2:+30174553 | None:intergenic |
| TCCGGCTTCACAGCCATCAT+CGG | 0.509679 | 4_2:-30178310 | Msa0597660:CDS |
| GAGAGATATAATTTGTTCAT+GGG | 0.510530 | 4_2:-30175320 | Msa0597660:CDS |
| GGCGAAAATGGATGACGTAA+AGG | 0.512408 | 4_2:-30177336 | Msa0597660:CDS |
| AAAGACTTCTGCAAATCAGT+TGG | 0.513705 | 4_2:-30176063 | Msa0597660:CDS |
| CGAAAGATTACGCTCGTTAG+GGG | 0.513867 | 4_2:-30176649 | Msa0597660:CDS |
| CAAGATACCGATGATGGAAA+GGG | 0.515187 | 4_2:-30174699 | Msa0597660:CDS |
| CCGTAGAGGAATAAATGTCT+TGG | 0.515329 | 4_2:+30176695 | None:intergenic |
| TGAAGCCAATGAAAAGGAAA+AGG | 0.517556 | 4_2:-30177588 | Msa0597660:CDS |
| CTCCTTTAACTTGATAACAT+CGG | 0.518360 | 4_2:+30177481 | None:intergenic |
| GTTTGATCCTTCTTTGGAGA+GGG | 0.519967 | 4_2:-30176595 | Msa0597660:CDS |
| TCTTGTTTGTGAAGATCTTG+AGG | 0.522838 | 4_2:-30176547 | Msa0597660:CDS |
| GAAGTTAATGGGGAAAAGGC+AGG | 0.523484 | 4_2:-30175675 | Msa0597660:CDS |
| CAGCATCAAACCATGTCACT+GGG | 0.524678 | 4_2:-30178400 | None:intergenic |
| CCAAGACATTTATTCCTCTA+CGG | 0.525121 | 4_2:-30176695 | Msa0597660:CDS |
| TCAAGATACCGATGATGGAA+AGG | 0.526229 | 4_2:-30174700 | Msa0597660:CDS |
| AGAATTGCCCTCTCCAAAGA+AGG | 0.527295 | 4_2:+30176588 | None:intergenic |
| CATGTCGTAGAATGCCTTTG+TGG | 0.527501 | 4_2:+30175148 | None:intergenic |
| ATGTCGTAGAATGCCTTTGT+GGG | 0.527952 | 4_2:+30175149 | None:intergenic |
| ACTTGCGCCTGCTGCAGTGA+TGG | 0.528810 | 4_2:+30178084 | None:intergenic |
| TGATGAAGTTGATGCTGCAT+TGG | 0.528838 | 4_2:-30174790 | Msa0597660:CDS |
| ATAATGCGAAGGAATGCATC+AGG | 0.530926 | 4_2:-30176743 | Msa0597660:CDS |
| ACACAGTCTGGCACAATGAC+TGG | 0.532620 | 4_2:-30176459 | Msa0597660:CDS |
| GCTAATCAAGATACCGATGA+TGG | 0.537866 | 4_2:-30174705 | Msa0597660:CDS |
| CAATTGCTGCGCTTGCGTTG+AGG | 0.539925 | 4_2:-30175100 | Msa0597660:CDS |
| AACAAAGCTGACGTGTTAGT+CGG | 0.543657 | 4_2:-30174636 | Msa0597660:CDS |
| AAAAGGCAGAGGAACATCTT+CGG | 0.545741 | 4_2:-30177760 | Msa0597660:CDS |
| ATTCGTTCAAAATCTTGTGA+AGG | 0.547590 | 4_2:-30174735 | Msa0597660:CDS |
| GATGGCTGTGAAGCCGGAGA+AGG | 0.547816 | 4_2:+30178315 | None:intergenic |
| TAATCATCAGATTAAGTCAA+AGG | 0.548082 | 4_2:-30175711 | Msa0597660:intron |
| TGCTAAGTTTGCTGATACTG+TGG | 0.548991 | 4_2:-30176901 | Msa0597660:CDS |
| GGAGTCGGAGCTGGATTCAA+AGG | 0.550284 | 4_2:-30177120 | Msa0597660:CDS |
| CAGTGACAGGGATAAAATAG+AGG | 0.551070 | 4_2:-30175522 | Msa0597660:CDS |
| ATCATCGGCCCTAATGGCGC+TGG | 0.552835 | 4_2:-30178295 | Msa0597660:CDS |
| TTGACTTTGATGAGCTCAGT+AGG | 0.554607 | 4_2:-30175565 | Msa0597660:CDS |
| GCAGCCGAGAATATGAAAAG+TGG | 0.555836 | 4_2:-30175817 | Msa0597660:CDS |
| AATACAAGAAAAGTGTGAGC+TGG | 0.556858 | 4_2:-30175651 | Msa0597660:CDS |
| TGCAAAGAATAAGGATGACC+TGG | 0.557363 | 4_2:-30177066 | Msa0597660:CDS |
| CTAGCCGTTACCGTTGCTAT+GGG | 0.557768 | 4_2:-30176801 | Msa0597660:CDS |
| GTTGGAGTATGAGCAAAATC+GGG | 0.561779 | 4_2:-30175935 | Msa0597660:CDS |
| GGGTCGAGATGGCAATGACT+TGG | 0.564382 | 4_2:-30177285 | Msa0597660:CDS |
| CTTTAAAGAATGACTTAAAG+GGG | 0.564517 | 4_2:-30175870 | Msa0597660:CDS |
| TTTAGCATTGTAGACATCCC+AGG | 0.564950 | 4_2:+30178033 | None:intergenic |
| CACAAAGGCATTCTACGACA+TGG | 0.567383 | 4_2:-30175147 | Msa0597660:CDS |
| AGCTGTCATGAAAGAAGAGA+AGG | 0.567878 | 4_2:-30175375 | Msa0597660:CDS |
| AATGGATGCAATTGTTGTTG+AGG | 0.570500 | 4_2:-30176772 | Msa0597660:CDS |
| CAGAATTTCAAGTCATACAA+AGG | 0.572120 | 4_2:-30178355 | Msa0597660:CDS |
| TTTCGAGCAGATATCTGGCT+CGG | 0.573865 | 4_2:-30177909 | Msa0597660:CDS |
| ATGGCTGTGAAGCCGGAGAA+GGG | 0.574175 | 4_2:+30178316 | None:intergenic |
| ATGGATGACGTAAAGGAAAA+GGG | 0.575915 | 4_2:-30177329 | Msa0597660:CDS |
| TTAAAAGTTGTAACTGTGGA+CGG | 0.578698 | 4_2:-30176492 | Msa0597660:CDS |
| ATGTCTTGGGAGGAATCCGC+AGG | 0.581973 | 4_2:+30176709 | None:intergenic |
| GTACTTCGTCGACGGTAATG+TGG | 0.583583 | 4_2:-30178059 | Msa0597660:CDS |
| GGCTTCCCAAAATGCAGCAG+AGG | 0.584818 | 4_2:-30176001 | Msa0597660:CDS |
| TGGTGGCACTAGTGGTGGAA+TGG | 0.586320 | 4_2:-30176439 | Msa0597660:CDS |
| TACAAAGGTTCCCAAATCAT+CGG | 0.587890 | 4_2:-30178340 | Msa0597660:CDS |
| GAATCAAAGTTGGAAGAGCT+AGG | 0.590268 | 4_2:-30176351 | Msa0597660:CDS |
| CATTAATTTACCCATAGCAA+CGG | 0.600751 | 4_2:+30176791 | None:intergenic |
| TTTACCCATAGCAACGGTAA+CGG | 0.602629 | 4_2:+30176797 | None:intergenic |
| AAAATCTTGTGAAGGAGAGA+GGG | 0.602787 | 4_2:-30174727 | Msa0597660:CDS |
| GGGGTCGAAAAGGGTCGAGA+TGG | 0.602981 | 4_2:-30177296 | Msa0597660:CDS |
| GTTGAGCTATCAGTATCCAT+AGG | 0.604826 | 4_2:+30175599 | None:intergenic |
| AGTTTGATCCTTCTTTGGAG+AGG | 0.605848 | 4_2:-30176596 | Msa0597660:CDS |
| CAACATTGAGCGATGAAAAG+GGG | 0.606910 | 4_2:-30176212 | Msa0597660:CDS |
| CGACGGTAATGTGGTTACCT+GGG | 0.607042 | 4_2:-30178050 | Msa0597660:CDS |
| GTATGAAGAAAATCGGCTCA+AGG | 0.608244 | 4_2:-30176022 | Msa0597660:CDS |
| GTTGATAAAACAAGTTGTGA+AGG | 0.609016 | 4_2:-30177641 | Msa0597660:CDS |
| TAGGATCTGATATGATTGGA+AGG | 0.611282 | 4_2:+30175618 | None:intergenic |
| ACAATGACTGGTGGCACTAG+TGG | 0.612466 | 4_2:-30176447 | Msa0597660:CDS |
| GTTTGCAGAGACTCTAAAAG+TGG | 0.613178 | 4_2:-30174612 | Msa0597660:CDS |
| TGTTTGTGAAGATCTTGAGG+AGG | 0.613588 | 4_2:-30176544 | Msa0597660:CDS |
| TTGATAAACCAAGCGAACCA+AGG | 0.614939 | 4_2:+30178141 | None:intergenic |
| GAAAGATTACGCTCGTTAGG+GGG | 0.615928 | 4_2:-30176648 | Msa0597660:CDS |
| TGAAATTCTGTATCTCGAGA+CGG | 0.616444 | 4_2:+30178368 | None:intergenic |
| AGACTTCTGCAAATCAGTTG+GGG | 0.617793 | 4_2:-30176061 | Msa0597660:CDS |
| TCGTAGAATGCCTTTGTGGG+AGG | 0.621429 | 4_2:+30175152 | None:intergenic |
| TGAGGATGAAAATAATGCGA+AGG | 0.622057 | 4_2:-30176754 | Msa0597660:CDS |
| TATGCTGAGATTGAAAAGCA+AGG | 0.625200 | 4_2:-30176252 | Msa0597660:CDS |
| AAAGATCAATCATGCGACCA+TGG | 0.625528 | 4_2:+30176850 | None:intergenic |
| CATTGCATCGAGAAATCCAA+AGG | 0.629695 | 4_2:-30177945 | Msa0597660:CDS |
| AAAACAAGTTGTGAAGGTGT+TGG | 0.632372 | 4_2:-30177635 | Msa0597660:CDS |
| CTAGTGGTGGAATGGAAGCA+AGG | 0.633127 | 4_2:-30176431 | Msa0597660:CDS |
| GCTTGATCTCACTAAATACC+GGG | 0.634794 | 4_2:-30174571 | Msa0597660:CDS |
| ATCAACTTCAAGTTCCTCAG+TGG | 0.637706 | 4_2:+30177658 | None:intergenic |
| CGATGTTATCAAGTTAAAGG+AGG | 0.639471 | 4_2:-30177480 | Msa0597660:CDS |
| ATGACTGGTGGCACTAGTGG+TGG | 0.639638 | 4_2:-30176444 | Msa0597660:CDS |
| CAAAGCTGACGTGTTAGTCG+GGG | 0.639845 | 4_2:-30174634 | Msa0597660:CDS |
| AAATAGGAAACACAGTGACA+GGG | 0.641852 | 4_2:-30175534 | Msa0597660:CDS |
| GACATGGATCAACTTTCTGG+TGG | 0.644379 | 4_2:-30175131 | Msa0597660:CDS |
| CACTGCTATGCCTCCCACAA+AGG | 0.649518 | 4_2:-30175162 | Msa0597660:CDS |
| GAGGTTAAAAGTTGTAACTG+TGG | 0.650773 | 4_2:-30176496 | Msa0597660:CDS |
| AAAGTGGAAATCCAAGTCAG+AGG | 0.651200 | 4_2:-30175801 | Msa0597660:CDS |
| GGAAAAGGGTCGAAATGTTG+GGG | 0.651213 | 4_2:-30177315 | Msa0597660:CDS |
| TCATCAGATTAAGTCAAAGG+AGG | 0.653398 | 4_2:-30175708 | Msa0597660:intron |
| GTTCCTTTAATTGAGAACCA+CGG | 0.655844 | 4_2:+30178215 | None:intergenic |
| CAATGGATTCAACATCACCC+TGG | 0.659318 | 4_2:+30177963 | None:intergenic |
| AACGTATTGAGAAGTTAATG+GGG | 0.659365 | 4_2:-30175685 | Msa0597660:CDS |
| GCAAGTCAGTACTTCGTCGA+CGG | 0.661288 | 4_2:-30178067 | Msa0597660:CDS |
| AGAGGAATAAATGTCTTGGG+AGG | 0.664023 | 4_2:+30176699 | None:intergenic |
| GTTAGAACCATTCACCTCCG+TGG | 0.671957 | 4_2:-30178232 | Msa0597660:CDS |
| TCAGGCATTTAAAAGACCTG+CGG | 0.678777 | 4_2:-30176725 | Msa0597660:CDS |
| CAGTCTGGCACAATGACTGG+TGG | 0.679756 | 4_2:-30176456 | Msa0597660:CDS |
| AAAGGGGCTACAGAACAAAG+AGG | 0.694287 | 4_2:-30175854 | Msa0597660:CDS |
| CCTTTAATTGAGAACCACGG+AGG | 0.718018 | 4_2:+30178218 | None:intergenic |
| GAAGACGATCCATTTCAACA+TGG | 0.722638 | 4_2:-30175194 | Msa0597660:CDS |
| AGCATCAAACCATGTCACTG+GGG | 0.736134 | 4_2:-30178399 | None:intergenic |
| TGCACACGAATAGACCGTAG+AGG | 0.737569 | 4_2:+30176681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTAATTTTGAAAGT+TGG | + | chr4_2:30176995-30177014 | None:intergenic | 15.0% |
| !! | TTCAAAATTAAAATATCAGT+TGG | - | chr4_2:30176998-30177017 | Msa0597660:CDS | 15.0% |
| !! | GAAATAAAGTAAAAACAATA+AGG | + | chr4_2:30177974-30177993 | None:intergenic | 15.0% |
| !! | ATACGCAAATATTTATAAAT+AGG | + | chr4_2:30177996-30178015 | None:intergenic | 15.0% |
| !! | GTTTAAGTATATTTATTACT+TGG | + | chr4_2:30178059-30178078 | None:intergenic | 15.0% |
| !! | AGAATATAGTAGAATAAAAG+AGG | - | chr4_2:30175690-30175709 | Msa0597660:CDS | 20.0% |
| !! | AGAAAAAAGAATTTCTTGAT+GGG | - | chr4_2:30175743-30175762 | Msa0597660:intron | 20.0% |
| !!! | TGATAATTTTGCAAAGAATA+AGG | - | chr4_2:30175876-30175895 | Msa0597660:CDS | 20.0% |
| ! | AAAAGTAAAGTAAGTTCCTT+TGG | + | chr4_2:30175025-30175044 | None:intergenic | 25.0% |
| !!! | GAAGAAAAAGACTATTTTGA+TGG | - | chr4_2:30175141-30175160 | Msa0597660:CDS | 25.0% |
| ! | GAAGAAAGAACAAAAGAAAA+AGG | - | chr4_2:30175174-30175193 | Msa0597660:CDS | 25.0% |
| ! | CGAATTGAAATCTATGAAAA+AGG | - | chr4_2:30175222-30175241 | Msa0597660:CDS | 25.0% |
| ! | GAAAATTGAAAAAACGAAGA+AGG | - | chr4_2:30175513-30175532 | Msa0597660:CDS | 25.0% |
| ! | GAGAAAAAAGAATTTCTTGA+TGG | - | chr4_2:30175742-30175761 | Msa0597660:intron | 25.0% |
| ! | CTCTTCAACAATTAAAAAAC+CGG | - | chr4_2:30175809-30175828 | Msa0597660:CDS | 25.0% |
| ! | TCTTCAACAATTAAAAAACC+GGG | - | chr4_2:30175810-30175829 | Msa0597660:CDS | 25.0% |
| ! | GATGTCTTGAAGAAAAAAAT+TGG | - | chr4_2:30175970-30175989 | Msa0597660:CDS | 25.0% |
| ! | TGAACTACATGAATTGAAAT+CGG | - | chr4_2:30176005-30176024 | Msa0597660:CDS | 25.0% |
| !! | TTCATACTTTTCTTTCTTCT+GGG | + | chr4_2:30176583-30176602 | None:intergenic | 25.0% |
| !! | ATTCATACTTTTCTTTCTTC+TGG | + | chr4_2:30176584-30176603 | None:intergenic | 25.0% |
| !! | AGAAAAGTATGAATCAAAGT+TGG | - | chr4_2:30176590-30176609 | Msa0597660:CDS | 25.0% |
| ! | CTATTTCAGACACTTTAATA+TGG | + | chr4_2:30176644-30176663 | None:intergenic | 25.0% |
| !! | TATTAAAGTGTCTGAAATAG+AGG | - | chr4_2:30176644-30176663 | Msa0597660:CDS | 25.0% |
| !!! | TGCTTTAAAGAATGACTTAA+AGG | - | chr4_2:30177079-30177098 | Msa0597660:CDS | 25.0% |
| !!! | GCTTTAAAGAATGACTTAAA+GGG | - | chr4_2:30177080-30177099 | Msa0597660:CDS | 25.0% |
| !! | CTTTAAAGAATGACTTAAAG+GGG | - | chr4_2:30177081-30177100 | Msa0597660:CDS | 25.0% |
| !!! | ATTTCCACTTTTCATATTCT+CGG | + | chr4_2:30177141-30177160 | None:intergenic | 25.0% |
| !!! | AAGTTTGGATAAGTTTGTTT+TGG | + | chr4_2:30177221-30177240 | None:intergenic | 25.0% |
| ! | CTTAATCTGATGATTAAGTT+TGG | + | chr4_2:30177236-30177255 | None:intergenic | 25.0% |
| ! | TAATCATCAGATTAAGTCAA+AGG | - | chr4_2:30177240-30177259 | Msa0597660:CDS | 25.0% |
| ! | AAAAACAGATAGATTCAATG+CGG | - | chr4_2:30177600-30177619 | Msa0597660:CDS | 25.0% |
| !!! | GAGAGATATAATTTGTTCAT+GGG | - | chr4_2:30177631-30177650 | Msa0597660:CDS | 25.0% |
| ! | TATCTATGTTACCAGATATA+CGG | + | chr4_2:30177666-30177685 | None:intergenic | 25.0% |
| !! | TCTTTCTATATGAGCATTTT+TGG | - | chr4_2:30177907-30177926 | Msa0597660:CDS | 25.0% |
| ! | TTATAACTGAAAAGATAAGG+AGG | + | chr4_2:30178120-30178139 | None:intergenic | 25.0% |
| ! | ACTTCATCAAGTATGAAAAA+TGG | + | chr4_2:30178150-30178169 | None:intergenic | 25.0% |
| ! | CAGAATTTCAAGTCATACAA+AGG | - | chr4_2:30174596-30174615 | Msa0597660:CDS | 30.0% |
| TGAAAAAGGAACATTTCTTG+TGG | - | chr4_2:30175236-30175255 | Msa0597660:CDS | 30.0% | |
| ! | GTTGATAAAACAAGTTGTGA+AGG | - | chr4_2:30175310-30175329 | Msa0597660:CDS | 30.0% |
| ! | CTTAATCTTTTCAACACATC+TGG | + | chr4_2:30175395-30175414 | None:intergenic | 30.0% |
| !! | TCCTTTAACTTGATAACATC+GGG | + | chr4_2:30175472-30175491 | None:intergenic | 30.0% |
| !! | CTCCTTTAACTTGATAACAT+CGG | + | chr4_2:30175473-30175492 | None:intergenic | 30.0% |
| !!! | GAGAAGTTTTGAAGATCTTA+AGG | - | chr4_2:30175594-30175613 | Msa0597660:CDS | 30.0% |
| GTAGAATAAAAGAGGAAGTT+AGG | - | chr4_2:30175698-30175717 | Msa0597660:CDS | 30.0% | |
| TAGTGAAGCTCAAACTAATT+TGG | - | chr4_2:30175780-30175799 | Msa0597660:intron | 30.0% | |
| AGATTATACTTCTTCTGTGT+TGG | + | chr4_2:30176132-30176151 | None:intergenic | 30.0% | |
| CATTAATTTACCCATAGCAA+CGG | + | chr4_2:30176163-30176182 | None:intergenic | 30.0% | |
| TTAAAAGTTGTAACTGTGGA+CGG | - | chr4_2:30176459-30176478 | Msa0597660:CDS | 30.0% | |
| GGAAGATTCTTCAAATTTCT+TGG | + | chr4_2:30176562-30176581 | None:intergenic | 30.0% | |
| GAACGTATTGAGAAGTTAAT+GGG | - | chr4_2:30177265-30177284 | Msa0597660:CDS | 30.0% | |
| AACGTATTGAGAAGTTAATG+GGG | - | chr4_2:30177266-30177285 | Msa0597660:CDS | 30.0% | |
| GGTAGAATACAAGAAAAACA+TGG | - | chr4_2:30177450-30177469 | Msa0597660:CDS | 30.0% | |
| AATAACAGCACCAAATTTGA+AGG | - | chr4_2:30177495-30177514 | Msa0597660:CDS | 30.0% | |
| TGTTTCAATGCCTTCAAATT+TGG | + | chr4_2:30177508-30177527 | None:intergenic | 30.0% | |
| ATTGAAACATTATGATTCCC+TGG | - | chr4_2:30177519-30177538 | Msa0597660:CDS | 30.0% | |
| !!! | AAGTCTTTCTTTTTCAACCA+GGG | + | chr4_2:30177539-30177558 | None:intergenic | 30.0% |
| !!! | TAAGTCTTTCTTTTTCAACC+AGG | + | chr4_2:30177540-30177559 | None:intergenic | 30.0% |
| !! | GGAGAGATATAATTTGTTCA+TGG | - | chr4_2:30177630-30177649 | Msa0597660:CDS | 30.0% |
| ! | CGTCTTCATTTTCCAAATAT+AGG | + | chr4_2:30177744-30177763 | None:intergenic | 30.0% |
| TGTTAGTAGACATTCTTTAC+AGG | + | chr4_2:30178088-30178107 | None:intergenic | 30.0% | |
| GTAAAGAATGTCTACTAACA+TGG | - | chr4_2:30178088-30178107 | Msa0597660:CDS | 30.0% | |
| GGCTTATAACTGAAAAGATA+AGG | + | chr4_2:30178123-30178142 | None:intergenic | 30.0% | |
| TCAAGTATGAAAAATGGTGA+AGG | + | chr4_2:30178144-30178163 | None:intergenic | 30.0% | |
| ATTCGTTCAAAATCTTGTGA+AGG | - | chr4_2:30178216-30178235 | Msa0597660:CDS | 30.0% | |
| TGAAATTCTGTATCTCGAGA+CGG | + | chr4_2:30174586-30174605 | None:intergenic | 35.0% | |
| TACAAAGGTTCCCAAATCAT+CGG | - | chr4_2:30174611-30174630 | Msa0597660:CDS | 35.0% | |
| GTTCCTTTAATTGAGAACCA+CGG | + | chr4_2:30174739-30174758 | None:intergenic | 35.0% | |
| !! | TTACTTTTCGAGCAGATATC+TGG | - | chr4_2:30175037-30175056 | Msa0597660:intron | 35.0% |
| AGAAGACAAAAATTCTGCTG+AGG | - | chr4_2:30175096-30175115 | Msa0597660:CDS | 35.0% | |
| AGAACAAAAGAAAAAGGCAG+AGG | - | chr4_2:30175180-30175199 | Msa0597660:CDS | 35.0% | |
| ! | TGATTTTGCTAAAACCACTG+AGG | - | chr4_2:30175279-30175298 | Msa0597660:CDS | 35.0% |
| ! | AAAACAAGTTGTGAAGGTGT+TGG | - | chr4_2:30175316-30175335 | Msa0597660:CDS | 35.0% |
| TGAACATGAAGCCAATGAAA+AGG | - | chr4_2:30175357-30175376 | Msa0597660:CDS | 35.0% | |
| TGAAGCCAATGAAAAGGAAA+AGG | - | chr4_2:30175363-30175382 | Msa0597660:CDS | 35.0% | |
| ! | TAGCTCCTTTTCCTTTTCAT+TGG | + | chr4_2:30175371-30175390 | None:intergenic | 35.0% |
| ACCCGATGTTATCAAGTTAA+AGG | - | chr4_2:30175468-30175487 | Msa0597660:CDS | 35.0% | |
| CGATGTTATCAAGTTAAAGG+AGG | - | chr4_2:30175471-30175490 | Msa0597660:CDS | 35.0% | |
| AAAAAGGTGAAGAACGAAAG+AGG | - | chr4_2:30175545-30175564 | Msa0597660:CDS | 35.0% | |
| TGAAGATCTTAAGGCGAAAA+TGG | - | chr4_2:30175603-30175622 | Msa0597660:CDS | 35.0% | |
| AATGGATGACGTAAAGGAAA+AGG | - | chr4_2:30175621-30175640 | Msa0597660:CDS | 35.0% | |
| ATGGATGACGTAAAGGAAAA+GGG | - | chr4_2:30175622-30175641 | Msa0597660:CDS | 35.0% | |
| ACAATTAAAAAACCGGGAGT+CGG | - | chr4_2:30175816-30175835 | Msa0597660:CDS | 35.0% | |
| !! | ACTCTAAAACGCTTGTTTCA+AGG | - | chr4_2:30176075-30176094 | Msa0597660:CDS | 35.0% |
| CGTTGCTATGGGTAAATTAA+TGG | - | chr4_2:30176161-30176180 | Msa0597660:CDS | 35.0% | |
| ! | AATGGATGCAATTGTTGTTG+AGG | - | chr4_2:30176179-30176198 | Msa0597660:CDS | 35.0% |
| TGAGGATGAAAATAATGCGA+AGG | - | chr4_2:30176197-30176216 | Msa0597660:CDS | 35.0% | |
| CGTAGAGGAATAAATGTCTT+GGG | + | chr4_2:30176258-30176277 | None:intergenic | 35.0% | |
| CCAAGACATTTATTCCTCTA+CGG | - | chr4_2:30176256-30176275 | Msa0597660:CDS | 35.0% | |
| ! | CACATCAAAAACCAGTTTTG+TGG | + | chr4_2:30176331-30176350 | None:intergenic | 35.0% |
| GATTCAGTTTGATCCTTCTT+TGG | - | chr4_2:30176350-30176369 | Msa0597660:CDS | 35.0% | |
| ! | TCTTGTTTGTGAAGATCTTG+AGG | - | chr4_2:30176404-30176423 | Msa0597660:CDS | 35.0% |
| ! | TACAACTTTTAACCTCTCAC+CGG | + | chr4_2:30176451-30176470 | None:intergenic | 35.0% |
| GAGGTTAAAAGTTGTAACTG+TGG | - | chr4_2:30176455-30176474 | Msa0597660:CDS | 35.0% | |
| TATGCTGAGATTGAAAAGCA+AGG | - | chr4_2:30176699-30176718 | Msa0597660:CDS | 35.0% | |
| TTCAACATTGAGCGATGAAA+AGG | - | chr4_2:30176737-30176756 | Msa0597660:CDS | 35.0% | |
| TCAACATTGAGCGATGAAAA+GGG | - | chr4_2:30176738-30176757 | Msa0597660:CDS | 35.0% | |
| ! | TCTCTTAACTTGATCAGTTC+TGG | + | chr4_2:30176795-30176814 | None:intergenic | 35.0% |
| AAAGACTTCTGCAAATCAGT+TGG | - | chr4_2:30176888-30176907 | Msa0597660:CDS | 35.0% | |
| AAGACTTCTGCAAATCAGTT+GGG | - | chr4_2:30176889-30176908 | Msa0597660:CDS | 35.0% | |
| TTCGCGAGTATGAAGAAAAT+CGG | - | chr4_2:30176922-30176941 | Msa0597660:CDS | 35.0% | |
| !! | ATTTTGAAAGTTGGCTACTC+AGG | + | chr4_2:30176986-30177005 | None:intergenic | 35.0% |
| AGTTGGAGTATGAGCAAAAT+CGG | - | chr4_2:30177015-30177034 | Msa0597660:CDS | 35.0% | |
| GAGTTCTCGAATTCAAGAAT+TGG | - | chr4_2:30177043-30177062 | Msa0597660:CDS | 35.0% | |
| GGATTGTGAAAAGGAAATTC+AGG | - | chr4_2:30177171-30177190 | Msa0597660:CDS | 35.0% | |
| GTGAAAAGGAAATTCAGGAA+CGG | - | chr4_2:30177176-30177195 | Msa0597660:CDS | 35.0% | |
| TCATCAGATTAAGTCAAAGG+AGG | - | chr4_2:30177243-30177262 | Msa0597660:CDS | 35.0% | |
| GGAACGTATTGAGAAGTTAA+TGG | - | chr4_2:30177264-30177283 | Msa0597660:CDS | 35.0% | |
| TTGAGAAGTTAATGGGGAAA+AGG | - | chr4_2:30177272-30177291 | Msa0597660:CDS | 35.0% | |
| ! | AATACAAGAAAAGTGTGAGC+TGG | - | chr4_2:30177300-30177319 | Msa0597660:CDS | 35.0% |
| TAGGATCTGATATGATTGGA+AGG | + | chr4_2:30177336-30177355 | None:intergenic | 35.0% | |
| TCCAATCATATCAGATCCTA+TGG | - | chr4_2:30177336-30177355 | Msa0597660:CDS | 35.0% | |
| TCCATAGGATCTGATATGAT+TGG | + | chr4_2:30177340-30177359 | None:intergenic | 35.0% | |
| AGCTCATCAAAGTCAAAAAC+TGG | + | chr4_2:30177382-30177401 | None:intergenic | 35.0% | |
| TCAGTAGGACACTAAGAAAT+AGG | - | chr4_2:30177401-30177420 | Msa0597660:CDS | 35.0% | |
| AAATAGGAAACACAGTGACA+GGG | - | chr4_2:30177417-30177436 | Msa0597660:CDS | 35.0% | |
| ! | AAGAGCAACACACATCTTTT+TGG | - | chr4_2:30177706-30177725 | Msa0597660:CDS | 35.0% |
| TGGAACAGCATACCTATATT+TGG | - | chr4_2:30177729-30177748 | Msa0597660:CDS | 35.0% | |
| TACTTGATGCCATGTTGAAA+TGG | + | chr4_2:30177769-30177788 | None:intergenic | 35.0% | |
| CAAACAACTCTACCTATGAA+TGG | + | chr4_2:30177881-30177900 | None:intergenic | 35.0% | |
| TAACTGAAAAGATAAGGAGG+CGG | + | chr4_2:30178117-30178136 | None:intergenic | 35.0% | |
| AAAATCTTGTGAAGGAGAGA+GGG | - | chr4_2:30178224-30178243 | Msa0597660:CDS | 35.0% | |
| TTGATTTACCAGCGCCATTA+GGG | + | chr4_2:30174667-30174686 | None:intergenic | 40.0% | |
| ! | TTTGATTTACCAGCGCCATT+AGG | + | chr4_2:30174668-30174687 | None:intergenic | 40.0% |
| CGCTGGTAAATCAAACCTAA+TGG | - | chr4_2:30174673-30174692 | Msa0597660:CDS | 40.0% | |
| TTGATAAACCAAGCGAACCA+AGG | + | chr4_2:30174813-30174832 | None:intergenic | 40.0% | |
| TTTAGCATTGTAGACATCCC+AGG | + | chr4_2:30174921-30174940 | None:intergenic | 40.0% | |
| CTTTGGATTTCTCGATGCAA+TGG | + | chr4_2:30175008-30175027 | None:intergenic | 40.0% | |
| CATTGCATCGAGAAATCCAA+AGG | - | chr4_2:30175006-30175025 | Msa0597660:intron | 40.0% | |
| AAAAGGCAGAGGAACATCTT+CGG | - | chr4_2:30175191-30175210 | Msa0597660:CDS | 40.0% | |
| ! | ATCAACTTCAAGTTCCTCAG+TGG | + | chr4_2:30175296-30175315 | None:intergenic | 40.0% |
| !! | TTGTGAAGGTGTTGGTAAAG+AGG | - | chr4_2:30175324-30175343 | Msa0597660:CDS | 40.0% |
| AAGAAGGAGCTCAGCAAAAA+AGG | - | chr4_2:30175529-30175548 | Msa0597660:CDS | 40.0% | |
| AAGGAAAAGGGTCGAAATGT+TGG | - | chr4_2:30175634-30175653 | Msa0597660:CDS | 40.0% | |
| AGGAAAAGGGTCGAAATGTT+GGG | - | chr4_2:30175635-30175654 | Msa0597660:CDS | 40.0% | |
| AGGAAAAACAGATGCGAGAA+AGG | - | chr4_2:30175851-30175870 | Msa0597660:CDS | 40.0% | |
| TGCAAAGAATAAGGATGACC+TGG | - | chr4_2:30175885-30175904 | Msa0597660:CDS | 40.0% | |
| !! | TGCTAAGTTTGCTGATACTG+TGG | - | chr4_2:30176050-30176069 | Msa0597660:CDS | 40.0% |
| AAAGATCAATCATGCGACCA+TGG | + | chr4_2:30176104-30176123 | None:intergenic | 40.0% | |
| TTTACCCATAGCAACGGTAA+CGG | + | chr4_2:30176157-30176176 | None:intergenic | 40.0% | |
| ATAATGCGAAGGAATGCATC+AGG | - | chr4_2:30176208-30176227 | Msa0597660:CDS | 40.0% | |
| TCAGGCATTTAAAAGACCTG+CGG | - | chr4_2:30176226-30176245 | Msa0597660:CDS | 40.0% | |
| AGAGGAATAAATGTCTTGGG+AGG | + | chr4_2:30176255-30176274 | None:intergenic | 40.0% | |
| CCGTAGAGGAATAAATGTCT+TGG | + | chr4_2:30176259-30176278 | None:intergenic | 40.0% | |
| ATCGAAAGATTACGCTCGTT+AGG | - | chr4_2:30176300-30176319 | Msa0597660:CDS | 40.0% | |
| TCGAAAGATTACGCTCGTTA+GGG | - | chr4_2:30176301-30176320 | Msa0597660:CDS | 40.0% | |
| ! | AGTTTGATCCTTCTTTGGAG+AGG | - | chr4_2:30176355-30176374 | Msa0597660:CDS | 40.0% |
| ! | GTTTGATCCTTCTTTGGAGA+GGG | - | chr4_2:30176356-30176375 | Msa0597660:CDS | 40.0% |
| TGTTTGTGAAGATCTTGAGG+AGG | - | chr4_2:30176407-30176426 | Msa0597660:CDS | 40.0% | |
| ! | AGGAGGCCAAAATTTTAAGC+TGG | - | chr4_2:30176424-30176443 | Msa0597660:CDS | 40.0% |
| ! | GCCAAAATTTTAAGCTGGAC+CGG | - | chr4_2:30176429-30176448 | Msa0597660:CDS | 40.0% |
| ! | ACCGGTCCAGCTTAAAATTT+TGG | + | chr4_2:30176433-30176452 | None:intergenic | 40.0% |
| TGGAAGCAAGGTCAAAAAAG+TGG | - | chr4_2:30176532-30176551 | Msa0597660:CDS | 40.0% | |
| GGAAGCAAGGTCAAAAAAGT+GGG | - | chr4_2:30176533-30176552 | Msa0597660:CDS | 40.0% | |
| GAATCAAAGTTGGAAGAGCT+AGG | - | chr4_2:30176600-30176619 | Msa0597660:CDS | 40.0% | |
| CAACATTGAGCGATGAAAAG+GGG | - | chr4_2:30176739-30176758 | Msa0597660:CDS | 40.0% | |
| AGACTTCTGCAAATCAGTTG+GGG | - | chr4_2:30176890-30176909 | Msa0597660:CDS | 40.0% | |
| ! | GTATGAAGAAAATCGGCTCA+AGG | - | chr4_2:30176929-30176948 | Msa0597660:CDS | 40.0% |
| GTTGGAGTATGAGCAAAATC+GGG | - | chr4_2:30177016-30177035 | Msa0597660:CDS | 40.0% | |
| AAAGTGGAAATCCAAGTCAG+AGG | - | chr4_2:30177150-30177169 | Msa0597660:CDS | 40.0% | |
| ! | CTTTTCACAATCCTCTGACT+TGG | + | chr4_2:30177164-30177183 | None:intergenic | 40.0% |
| CAAGTCAGAGGATTGTGAAA+AGG | - | chr4_2:30177162-30177181 | Msa0597660:CDS | 40.0% | |
| AAATTCAGGAACGGAAGAAG+AGG | - | chr4_2:30177185-30177204 | Msa0597660:CDS | 40.0% | |
| AATTCAGGAACGGAAGAAGA+GGG | - | chr4_2:30177186-30177205 | Msa0597660:CDS | 40.0% | |
| GTTGAGCTATCAGTATCCAT+AGG | + | chr4_2:30177355-30177374 | None:intergenic | 40.0% | |
| ATGGATACTGATAGCTCAAC+AGG | - | chr4_2:30177355-30177374 | Msa0597660:CDS | 40.0% | |
| TTGACTTTGATGAGCTCAGT+AGG | - | chr4_2:30177386-30177405 | Msa0597660:CDS | 40.0% | |
| GAAATAGGAAACACAGTGAC+AGG | - | chr4_2:30177416-30177435 | Msa0597660:CDS | 40.0% | |
| CAGTGACAGGGATAAAATAG+AGG | - | chr4_2:30177429-30177448 | Msa0597660:CDS | 40.0% | |
| AGCTGTCATGAAAGAAGAGA+AGG | - | chr4_2:30177576-30177595 | Msa0597660:CDS | 40.0% | |
| TAGATTCAATGCGGTTAAGC+AGG | - | chr4_2:30177609-30177628 | Msa0597660:CDS | 40.0% | |
| ! | AGCAACACACATCTTTTTGG+TGG | - | chr4_2:30177709-30177728 | Msa0597660:CDS | 40.0% |
| GAAGACGATCCATTTCAACA+TGG | - | chr4_2:30177757-30177776 | Msa0597660:CDS | 40.0% | |
| ATGTCGTAGAATGCCTTTGT+GGG | + | chr4_2:30177805-30177824 | None:intergenic | 40.0% | |
| TACGACATGGATCAACTTTC+TGG | - | chr4_2:30177817-30177836 | Msa0597660:CDS | 40.0% | |
| AACTGAAAAGATAAGGAGGC+GGG | + | chr4_2:30178116-30178135 | None:intergenic | 40.0% | |
| !! | TGATGAAGTTGATGCTGCAT+TGG | - | chr4_2:30178161-30178180 | Msa0597660:CDS | 40.0% |
| CAAAATCTTGTGAAGGAGAG+AGG | - | chr4_2:30178223-30178242 | Msa0597660:CDS | 40.0% | |
| GCTAATCAAGATACCGATGA+TGG | - | chr4_2:30178246-30178265 | Msa0597660:CDS | 40.0% | |
| !! | TCAAGATACCGATGATGGAA+AGG | - | chr4_2:30178251-30178270 | Msa0597660:CDS | 40.0% |
| !! | CAAGATACCGATGATGGAAA+GGG | - | chr4_2:30178252-30178271 | Msa0597660:CDS | 40.0% |
| CTGAAAACCCTTTCCATCAT+CGG | + | chr4_2:30178262-30178281 | None:intergenic | 40.0% | |
| AACAAAGCTGACGTGTTAGT+CGG | - | chr4_2:30178315-30178334 | Msa0597660:CDS | 40.0% | |
| ! | GTTTGCAGAGACTCTAAAAG+TGG | - | chr4_2:30178339-30178358 | Msa0597660:CDS | 40.0% |
| CGCTTGATCTCACTAAATAC+CGG | - | chr4_2:30178379-30178398 | Msa0597660:CDS | 40.0% | |
| GCTTGATCTCACTAAATACC+GGG | - | chr4_2:30178380-30178399 | Msa0597660:CDS | 40.0% | |
| CAAAGCAGATAGCGTCCATT+AGG | + | chr4_2:30174691-30174710 | None:intergenic | 45.0% | |
| ! | GACGCTATCTGCTTTGTTCT+TGG | - | chr4_2:30174695-30174714 | Msa0597660:CDS | 45.0% |
| CCTTTAATTGAGAACCACGG+AGG | + | chr4_2:30174736-30174755 | None:intergenic | 45.0% | |
| CCTCCGTGGTTCTCAATTAA+AGG | - | chr4_2:30174733-30174752 | Msa0597660:CDS | 45.0% | |
| GAAGAATGAACGTTCTGCCT+TGG | - | chr4_2:30174793-30174812 | Msa0597660:CDS | 45.0% | |
| CGTCAAAGCTCGCAATTTCT+TGG | - | chr4_2:30174961-30174980 | Msa0597660:intron | 45.0% | |
| ! | TCGCAATTTCTTGGTCTTCC+AGG | - | chr4_2:30174970-30174989 | Msa0597660:intron | 45.0% |
| ! | CGCAATTTCTTGGTCTTCCA+GGG | - | chr4_2:30174971-30174990 | Msa0597660:intron | 45.0% |
| ! | CAATGGATTCAACATCACCC+TGG | + | chr4_2:30174991-30175010 | None:intergenic | 45.0% |
| TTTCGAGCAGATATCTGGCT+CGG | - | chr4_2:30175042-30175061 | Msa0597660:intron | 45.0% | |
| ! | CAAGAGAGAGTACGAGAAGT+TGG | - | chr4_2:30175072-30175091 | Msa0597660:intron | 45.0% |
| GGCGAAAATGGATGACGTAA+AGG | - | chr4_2:30175615-30175634 | Msa0597660:CDS | 45.0% | |
| GGAAAAGGGTCGAAATGTTG+GGG | - | chr4_2:30175636-30175655 | Msa0597660:CDS | 45.0% | |
| TCGAAATGTTGGGGTCGAAA+AGG | - | chr4_2:30175645-30175664 | Msa0597660:CDS | 45.0% | |
| CGAAATGTTGGGGTCGAAAA+GGG | - | chr4_2:30175646-30175665 | Msa0597660:CDS | 45.0% | |
| CGAAAGATTACGCTCGTTAG+GGG | - | chr4_2:30176302-30176321 | Msa0597660:CDS | 45.0% | |
| GAAAGATTACGCTCGTTAGG+GGG | - | chr4_2:30176303-30176322 | Msa0597660:CDS | 45.0% | |
| AGAATTGCCCTCTCCAAAGA+AGG | + | chr4_2:30176366-30176385 | None:intergenic | 45.0% | |
| ! | AGGGCAATTCTCTTTGCTGT+TGG | - | chr4_2:30176375-30176394 | Msa0597660:CDS | 45.0% |
| !! | GGGCAATTCTCTTTGCTGTT+GGG | - | chr4_2:30176376-30176395 | Msa0597660:CDS | 45.0% |
| ! | TCTCTCCTCTGCTGCATTTT+GGG | + | chr4_2:30176958-30176977 | None:intergenic | 45.0% |
| AAAGGGGCTACAGAACAAAG+AGG | - | chr4_2:30177097-30177116 | Msa0597660:CDS | 45.0% | |
| GCAGCCGAGAATATGAAAAG+TGG | - | chr4_2:30177134-30177153 | Msa0597660:CDS | 45.0% | |
| GAAGTTAATGGGGAAAAGGC+AGG | - | chr4_2:30177276-30177295 | Msa0597660:CDS | 45.0% | |
| GGTGCTTTCAACCGTATATC+TGG | - | chr4_2:30177652-30177671 | Msa0597660:CDS | 45.0% | |
| CATGTCGTAGAATGCCTTTG+TGG | + | chr4_2:30177806-30177825 | None:intergenic | 45.0% | |
| !! | CACAAAGGCATTCTACGACA+TGG | - | chr4_2:30177804-30177823 | Msa0597660:CDS | 45.0% |
| GACATGGATCAACTTTCTGG+TGG | - | chr4_2:30177820-30177839 | Msa0597660:CDS | 45.0% | |
| CGTTGAGGTTCTCCATTCAT+AGG | - | chr4_2:30177866-30177885 | Msa0597660:CDS | 45.0% | |
| ACAAAGCTGACGTGTTAGTC+GGG | - | chr4_2:30178316-30178335 | Msa0597660:CDS | 45.0% | |
| GGAGAAGGGACCGATGATTT+GGG | + | chr4_2:30174624-30174643 | None:intergenic | 50.0% | |
| CAAATCATCGGTCCCTTCTC+CGG | - | chr4_2:30174623-30174642 | Msa0597660:CDS | 50.0% | |
| GTTAGAACCATTCACCTCCG+TGG | - | chr4_2:30174719-30174738 | Msa0597660:CDS | 50.0% | |
| TTGAGAACCACGGAGGTGAA+TGG | + | chr4_2:30174729-30174748 | None:intergenic | 50.0% | |
| ! | CTGTTTCTCGCTGTCATCGA+AGG | + | chr4_2:30174774-30174793 | None:intergenic | 50.0% |
| GCAAGTCAGTACTTCGTCGA+CGG | - | chr4_2:30174884-30174903 | Msa0597660:intron | 50.0% | |
| GTACTTCGTCGACGGTAATG+TGG | - | chr4_2:30174892-30174911 | Msa0597660:intron | 50.0% | |
| TCGACGGTAATGTGGTTACC+TGG | - | chr4_2:30174900-30174919 | Msa0597660:intron | 50.0% | |
| CGACGGTAATGTGGTTACCT+GGG | - | chr4_2:30174901-30174920 | Msa0597660:intron | 50.0% | |
| CGCTTGTTTCAAGGAGTCCA+TGG | - | chr4_2:30176084-30176103 | Msa0597660:CDS | 50.0% | |
| TCTAGCCGTTACCGTTGCTA+TGG | - | chr4_2:30176149-30176168 | Msa0597660:CDS | 50.0% | |
| CTAGCCGTTACCGTTGCTAT+GGG | - | chr4_2:30176150-30176169 | Msa0597660:CDS | 50.0% | |
| TGCACACGAATAGACCGTAG+AGG | + | chr4_2:30176273-30176292 | None:intergenic | 50.0% | |
| !! | GTTAGGGGGTACCACAAAAC+TGG | - | chr4_2:30176317-30176336 | Msa0597660:CDS | 50.0% |
| ! | TTTTAAGCTGGACCGGTGAG+AGG | - | chr4_2:30176436-30176455 | Msa0597660:CDS | 50.0% |
| GGAATTCTGCTGACACAGTC+TGG | - | chr4_2:30176480-30176499 | Msa0597660:CDS | 50.0% | |
| ACACAGTCTGGCACAATGAC+TGG | - | chr4_2:30176492-30176511 | Msa0597660:CDS | 50.0% | |
| ACAATGACTGGTGGCACTAG+TGG | - | chr4_2:30176504-30176523 | Msa0597660:CDS | 50.0% | |
| ! | CTAGTGGTGGAATGGAAGCA+AGG | - | chr4_2:30176520-30176539 | Msa0597660:CDS | 50.0% |
| ! | GTCTCTCCTCTGCTGCATTT+TGG | + | chr4_2:30176959-30176978 | None:intergenic | 50.0% |
| CTCGGCTGCTAACTTTGCTT+CGG | + | chr4_2:30177123-30177142 | None:intergenic | 50.0% | |
| TCGTAGAATGCCTTTGTGGG+AGG | + | chr4_2:30177802-30177821 | None:intergenic | 50.0% | |
| CAAAGCTGACGTGTTAGTCG+GGG | - | chr4_2:30178317-30178336 | Msa0597660:CDS | 50.0% | |
| CGGAGAAGGGACCGATGATT+TGG | + | chr4_2:30174625-30174644 | None:intergenic | 55.0% | |
| ATGGCTGTGAAGCCGGAGAA+GGG | + | chr4_2:30174638-30174657 | None:intergenic | 55.0% | |
| TCCGGCTTCACAGCCATCAT+CGG | - | chr4_2:30174641-30174660 | Msa0597660:CDS | 55.0% | |
| ACAGCCATCATCGGCCCTAA+TGG | - | chr4_2:30174650-30174669 | Msa0597660:CDS | 55.0% | |
| ! | ACGTTCTGCCTTGGTTCGCT+TGG | - | chr4_2:30174802-30174821 | Msa0597660:CDS | 55.0% |
| GCAAGAACCATCACTGCAGC+AGG | - | chr4_2:30174860-30174879 | Msa0597660:intron | 55.0% | |
| GGGTCGAGATGGCAATGACT+TGG | - | chr4_2:30175666-30175685 | Msa0597660:CDS | 55.0% | |
| AAAAAACCGGGAGTCGGAGC+TGG | - | chr4_2:30175822-30175841 | Msa0597660:CDS | 55.0% | |
| TTGAATCCAGCTCCGACTCC+CGG | + | chr4_2:30175831-30175850 | None:intergenic | 55.0% | |
| GGAGTCGGAGCTGGATTCAA+AGG | - | chr4_2:30175831-30175850 | Msa0597660:CDS | 55.0% | |
| ! | GCTCTCTCTTCGCGTTTTCC+AGG | + | chr4_2:30175906-30175925 | None:intergenic | 55.0% |
| GAGAGAGCTGTGTGTGTTGC+AGG | - | chr4_2:30175918-30175937 | Msa0597660:CDS | 55.0% | |
| ATGTCTTGGGAGGAATCCGC+AGG | + | chr4_2:30176245-30176264 | None:intergenic | 55.0% | |
| CAGTCTGGCACAATGACTGG+TGG | - | chr4_2:30176495-30176514 | Msa0597660:CDS | 55.0% | |
| ATGACTGGTGGCACTAGTGG+TGG | - | chr4_2:30176507-30176526 | Msa0597660:CDS | 55.0% | |
| ! | TGGTGGCACTAGTGGTGGAA+TGG | - | chr4_2:30176512-30176531 | Msa0597660:CDS | 55.0% |
| GGCTTCCCAAAATGCAGCAG+AGG | - | chr4_2:30176950-30176969 | Msa0597660:CDS | 55.0% | |
| CACTGCTATGCCTCCCACAA+AGG | - | chr4_2:30177789-30177808 | Msa0597660:CDS | 55.0% | |
| CAATTGCTGCGCTTGCGTTG+AGG | - | chr4_2:30177851-30177870 | Msa0597660:CDS | 55.0% | |
| GATGGCTGTGAAGCCGGAGA+AGG | + | chr4_2:30174639-30174658 | None:intergenic | 60.0% | |
| ! | GCCGATGATGGCTGTGAAGC+CGG | + | chr4_2:30174645-30174664 | None:intergenic | 60.0% |
| AGCGCCATTAGGGCCGATGA+TGG | + | chr4_2:30174657-30174676 | None:intergenic | 60.0% | |
| ATCATCGGCCCTAATGGCGC+TGG | - | chr4_2:30174656-30174675 | Msa0597660:CDS | 60.0% | |
| ACTTGCGCCTGCTGCAGTGA+TGG | + | chr4_2:30174870-30174889 | None:intergenic | 60.0% | |
| GGGGTCGAAAAGGGTCGAGA+TGG | - | chr4_2:30175655-30175674 | Msa0597660:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 30174563 | 30178410 | 30174563 | ID=Msa0597660;Name=Msa0597660 |
| chr4_2 | mRNA | 30174563 | 30178410 | 30174563 | ID=Msa0597660-mRNA-1;Parent=Msa0597660;Name=Msa0597660-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|1175 |
| chr4_2 | exon | 30175798 | 30178410 | 30175798 | ID=Msa0597660-mRNA-1:exon:7653;Parent=Msa0597660-mRNA-1 |
| chr4_2 | exon | 30175086 | 30175723 | 30175086 | ID=Msa0597660-mRNA-1:exon:7652;Parent=Msa0597660-mRNA-1 |
| chr4_2 | exon | 30174563 | 30174839 | 30174563 | ID=Msa0597660-mRNA-1:exon:7651;Parent=Msa0597660-mRNA-1 |
| chr4_2 | CDS | 30175798 | 30178410 | 30175798 | ID=Msa0597660-mRNA-1:cds;Parent=Msa0597660-mRNA-1 |
| chr4_2 | CDS | 30175086 | 30175723 | 30175086 | ID=Msa0597660-mRNA-1:cds;Parent=Msa0597660-mRNA-1 |
| chr4_2 | CDS | 30174563 | 30174839 | 30174563 | ID=Msa0597660-mRNA-1:cds;Parent=Msa0597660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
