Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597750 | XP_003605865.1 | 97.159 | 528 | 15 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1066 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597750 | sp|Q9LY71|CKX6_ARATH | 66.919 | 529 | 171 | 3 | 2 | 528 | 7 | 533 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0597750 | Msa0637550 | 0.859513 | 3.927779e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597750 | MtrunA17_Chr4g0020621 | 97.159 | 528 | 15 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1066 |
| Msa0597750 | MtrunA17_Chr3g0091141 | 78.788 | 528 | 107 | 2 | 1 | 528 | 25 | 547 | 0.0 | 872 |
| Msa0597750 | MtrunA17_Chr7g0257061 | 67.742 | 496 | 157 | 2 | 33 | 528 | 51 | 543 | 0.0 | 722 |
| Msa0597750 | MtrunA17_Chr3g0141981 | 50.659 | 531 | 246 | 8 | 6 | 527 | 5 | 528 | 0.0 | 531 |
| Msa0597750 | MtrunA17_Chr4g0071111 | 46.168 | 535 | 260 | 11 | 7 | 523 | 3 | 527 | 1.10e-164 | 477 |
| Msa0597750 | MtrunA17_Chr2g0299371 | 49.123 | 513 | 226 | 10 | 36 | 521 | 33 | 537 | 3.83e-164 | 476 |
| Msa0597750 | MtrunA17_Chr1g0150941 | 45.397 | 478 | 241 | 7 | 57 | 523 | 37 | 505 | 1.17e-148 | 436 |
| Msa0597750 | MtrunA17_Chr4g0071121 | 46.817 | 487 | 234 | 10 | 47 | 521 | 44 | 517 | 9.89e-148 | 434 |
| Msa0597750 | MtrunA17_Chr2g0299361 | 42.988 | 328 | 158 | 6 | 202 | 522 | 6 | 311 | 5.27e-86 | 268 |
| Msa0597750 | MtrunA17_Chr2g0299351 | 41.791 | 201 | 99 | 5 | 17 | 205 | 11 | 205 | 1.14e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0597750 | AT3G63440.1 | 66.919 | 529 | 171 | 3 | 2 | 528 | 7 | 533 | 0.0 | 745 |
| Msa0597750 | AT2G41510.2 | 65.492 | 539 | 168 | 3 | 1 | 524 | 69 | 604 | 0.0 | 744 |
| Msa0597750 | AT2G41510.1 | 65.492 | 539 | 168 | 3 | 1 | 524 | 7 | 542 | 0.0 | 743 |
| Msa0597750 | AT2G41510.3 | 65.904 | 437 | 131 | 3 | 1 | 422 | 7 | 440 | 0.0 | 592 |
| Msa0597750 | AT1G75450.1 | 52.326 | 516 | 234 | 8 | 15 | 522 | 10 | 521 | 0.0 | 544 |
| Msa0597750 | AT1G75450.2 | 52.224 | 517 | 234 | 9 | 15 | 522 | 6 | 518 | 0.0 | 539 |
| Msa0597750 | AT5G56970.1 | 47.107 | 484 | 241 | 6 | 45 | 523 | 46 | 519 | 1.51e-162 | 472 |
| Msa0597750 | AT5G21482.1 | 46.614 | 502 | 244 | 9 | 39 | 525 | 32 | 524 | 1.09e-159 | 465 |
| Msa0597750 | AT2G19500.1 | 43.659 | 481 | 251 | 8 | 47 | 521 | 35 | 501 | 2.14e-145 | 427 |
| Msa0597750 | AT4G29740.2 | 42.285 | 499 | 263 | 11 | 41 | 522 | 34 | 524 | 9.42e-142 | 419 |
| Msa0597750 | AT5G56970.2 | 46.475 | 383 | 195 | 5 | 45 | 422 | 46 | 423 | 2.44e-122 | 366 |
| Msa0597750 | AT4G29740.1 | 43.358 | 399 | 205 | 10 | 41 | 422 | 34 | 428 | 5.42e-108 | 329 |
| Msa0597750 | AT4G29740.3 | 43.366 | 309 | 156 | 8 | 41 | 334 | 34 | 338 | 9.67e-82 | 259 |
Find 106 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAGCATCAAGAGATTT+TGG | 0.151632 | 4_2:+30519943 | Msa0597750:CDS |
| GCAATATCAGAAACTGATTT+TGG | 0.184314 | 4_2:-30520003 | None:intergenic |
| CCAACATGGATTTGCATTTC+AGG | 0.190881 | 4_2:-30520162 | None:intergenic |
| ATGTGACTTCAGTTTGAAAA+AGG | 0.203410 | 4_2:-30522284 | None:intergenic |
| TTGTTCAAAGTTGAAGTATT+TGG | 0.239329 | 4_2:-30521781 | None:intergenic |
| CACAGTGTTCTTGGAGGACT+TGG | 0.249210 | 4_2:+30521211 | Msa0597750:CDS |
| CAGCAGCTTGAGATTGTTAC+AGG | 0.278646 | 4_2:+30520372 | Msa0597750:CDS |
| ATTGTTTGCAACAGGTAAAA+TGG | 0.285439 | 4_2:+30521547 | Msa0597750:intron |
| GAGCTCTTCCACAGTGTTCT+TGG | 0.294322 | 4_2:+30521202 | Msa0597750:CDS |
| CTTGGAGGACTTGGCCAGTT+TGG | 0.295539 | 4_2:+30521220 | Msa0597750:CDS |
| TAAAATGAGAATATCTATTA+TGG | 0.296329 | 4_2:+30523309 | Msa0597750:three_prime_UTR |
| GAAGAATGGAGGGTCCATTT+TGG | 0.296962 | 4_2:+30523164 | Msa0597750:CDS |
| TGAAGTATTTGGCTAATTCT+AGG | 0.299387 | 4_2:-30521770 | None:intergenic |
| TTGCATGAGACTTTAAGATA+TGG | 0.306061 | 4_2:+30520237 | Msa0597750:CDS |
| CAACCACAATAAAACATATA+TGG | 0.331867 | 4_2:+30520025 | Msa0597750:CDS |
| CTTCAGATATTAACCTCTCT+TGG | 0.343877 | 4_2:-30521611 | None:intergenic |
| TGGAGGAATTGTGATCAAAA+TGG | 0.346402 | 4_2:+30520125 | Msa0597750:CDS |
| TCTCCCACTTAGTACCAAAA+TGG | 0.352161 | 4_2:-30523178 | None:intergenic |
| ACAAATTGATATAGTAAATC+AGG | 0.352610 | 4_2:+30521800 | Msa0597750:CDS |
| AATAAAACATATATGGCATA+TGG | 0.360763 | 4_2:+30520032 | Msa0597750:CDS |
| GACTGGATCTTGTGGGTTGA+AGG | 0.366464 | 4_2:-30521706 | None:intergenic |
| GAACTGGTCTGCTAAATAAC+TGG | 0.373720 | 4_2:+30521676 | Msa0597750:CDS |
| AATGCATTTGATTACATTGA+AGG | 0.380931 | 4_2:+30521636 | Msa0597750:CDS |
| GCTTAGACATGTTTGAATAT+AGG | 0.383669 | 4_2:+30523359 | Msa0597750:three_prime_UTR |
| GGCCATTGCTTGTTTGTGTA+AGG | 0.388170 | 4_2:-30522449 | None:intergenic |
| GAGGTCAAATTGCGTTCAAA+AGG | 0.401323 | 4_2:+30522339 | Msa0597750:CDS |
| TCTCCTTATGTGGATGTCTC+TGG | 0.403316 | 4_2:+30520192 | Msa0597750:CDS |
| TCACTGCCATAGGATGATAT+TGG | 0.426950 | 4_2:-30519975 | None:intergenic |
| TGGCAATTCTTCTCCTTATG+TGG | 0.427557 | 4_2:+30520182 | Msa0597750:CDS |
| AATCTCTTGATGCTTTGTTA+AGG | 0.429128 | 4_2:-30519939 | None:intergenic |
| TGCATGAGACTTTAAGATAT+GGG | 0.430330 | 4_2:+30520238 | Msa0597750:CDS |
| CTCTCCAATGCTGGTGTAAG+TGG | 0.431781 | 4_2:+30520312 | Msa0597750:CDS |
| TTCTTCTTGTGTATTGTGGT+GGG | 0.434255 | 4_2:-30523147 | None:intergenic |
| TTCACTGGATAGATAAGGAC+AGG | 0.444541 | 4_2:-30522471 | None:intergenic |
| TCCATTCTTCTTGTGTATTG+TGG | 0.444561 | 4_2:-30523151 | None:intergenic |
| CACGAGTTATAATGCCAAAC+TGG | 0.445835 | 4_2:-30521234 | None:intergenic |
| AAGTAGAAAATATCTTCATC+TGG | 0.447002 | 4_2:-30522996 | None:intergenic |
| CCTTCTTCAAATGGAACTGA+TGG | 0.460391 | 4_2:+30523044 | Msa0597750:CDS |
| TCTGCAGTTCCTTCTTCAAA+TGG | 0.463091 | 4_2:+30523035 | Msa0597750:CDS |
| TATTAACCTCTCTTGGTCTC+TGG | 0.466724 | 4_2:-30521604 | None:intergenic |
| TTTGTTATAATAAACAGAAC+TGG | 0.466989 | 4_2:+30521660 | Msa0597750:CDS |
| CCAGGAGCAAGTATTGCAAA+TGG | 0.467926 | 4_2:-30523230 | None:intergenic |
| ACAAGATAATGAATCCTTTG+AGG | 0.473217 | 4_2:-30519813 | None:intergenic |
| AATTGCGTTCAAAAGGGTTG+TGG | 0.474805 | 4_2:+30522346 | Msa0597750:CDS |
| TAGCTTGGACTGGATCTTGT+GGG | 0.477655 | 4_2:-30521713 | None:intergenic |
| CCATCAGTTCCATTTGAAGA+AGG | 0.479234 | 4_2:-30523044 | None:intergenic |
| TACTGTCAAAGAGAAAATCT+TGG | 0.480881 | 4_2:+30523107 | Msa0597750:CDS |
| ATTCTTCTTGTGTATTGTGG+TGG | 0.483037 | 4_2:-30523148 | None:intergenic |
| TGTGGGATGTTCCACATCCA+TGG | 0.484788 | 4_2:+30522364 | Msa0597750:CDS |
| ATTGCGTTCAAAAGGGTTGT+GGG | 0.489469 | 4_2:+30522347 | Msa0597750:CDS |
| AAATAATCTGTCCATGATCT+TGG | 0.489749 | 4_2:-30520267 | None:intergenic |
| CCATTTGCAATACTTGCTCC+TGG | 0.494691 | 4_2:+30523230 | Msa0597750:CDS |
| TCTTGAACCAGCACCTTCCA+TGG | 0.496783 | 4_2:+30521267 | Msa0597750:CDS |
| GGTGGCACTCTCTCCAATGC+TGG | 0.498379 | 4_2:+30520303 | Msa0597750:CDS |
| GGACATGGACATTCACTTCA+AGG | 0.501567 | 4_2:+30520087 | Msa0597750:CDS |
| CTCTTCCACAGTGTTCTTGG+AGG | 0.506567 | 4_2:+30521205 | Msa0597750:CDS |
| ATGGGTTGGCACCAAGATCA+TGG | 0.509378 | 4_2:+30520256 | Msa0597750:CDS |
| CTGACTTGAAATGACTAGCT+TGG | 0.516049 | 4_2:-30521728 | None:intergenic |
| ATAAAACATATATGGCATAT+GGG | 0.519803 | 4_2:+30520033 | Msa0597750:CDS |
| GATTATTTGCATCTAACAGT+TGG | 0.527090 | 4_2:+30520282 | Msa0597750:CDS |
| TAGATACCAATATCATCCTA+TGG | 0.527445 | 4_2:+30519969 | Msa0597750:CDS |
| GTATGTCTTTCAAGTAAACT+AGG | 0.529015 | 4_2:+30523483 | Msa0597750:three_prime_UTR |
| GCTAGTCATTTCAAGTCAGA+TGG | 0.536306 | 4_2:+30521732 | Msa0597750:CDS |
| CAGGAGCAAGTATTGCAAAT+GGG | 0.537599 | 4_2:-30523229 | None:intergenic |
| CAAAACATTGTATTCCTCAA+AGG | 0.539298 | 4_2:+30519799 | Msa0597750:CDS |
| CATCTCACTGTTGCAGCAAG+AGG | 0.541220 | 4_2:+30520066 | Msa0597750:CDS |
| AGGTCAAATTGCGTTCAAAA+GGG | 0.542126 | 4_2:+30522340 | Msa0597750:CDS |
| ATGTCTCTGGTGGTGAATTG+TGG | 0.542405 | 4_2:+30520205 | Msa0597750:CDS |
| ACCACAATACACAAGAAGAA+TGG | 0.542851 | 4_2:+30523150 | Msa0597750:CDS |
| CTAGCTTGGACTGGATCTTG+TGG | 0.545369 | 4_2:-30521714 | None:intergenic |
| AAAAGATTGAGCCATGGATG+TGG | 0.545750 | 4_2:-30522375 | None:intergenic |
| TCTTCTTGTGTATTGTGGTG+GGG | 0.546012 | 4_2:-30523146 | None:intergenic |
| CCACCAGAGACATCCACATA+AGG | 0.546660 | 4_2:-30520195 | None:intergenic |
| TGAGACTTTAAGATATGGGT+TGG | 0.549758 | 4_2:+30520242 | Msa0597750:CDS |
| AAACTCAAATGTCCTTCTAG+TGG | 0.553815 | 4_2:-30519904 | None:intergenic |
| TTGAAATGACTAGCTTGGAC+TGG | 0.554471 | 4_2:-30521723 | None:intergenic |
| TATTTGCATCTAACAGTTGG+TGG | 0.554888 | 4_2:+30520285 | Msa0597750:CDS |
| ATTAGTACCATGGAAGGTGC+TGG | 0.564357 | 4_2:-30521274 | None:intergenic |
| CTGTGCACTATCAATTTGTG+TGG | 0.576200 | 4_2:-30523383 | None:intergenic |
| CAAGGACAATCACAAACTCA+TGG | 0.581854 | 4_2:+30520105 | Msa0597750:CDS |
| ACTGTTGCAGCAAGAGGACA+TGG | 0.583396 | 4_2:+30520072 | Msa0597750:CDS |
| ATCCTTACACAAACAAGCAA+TGG | 0.584150 | 4_2:+30522447 | Msa0597750:CDS |
| TTTGGATGCATCACTGCCAT+AGG | 0.590081 | 4_2:-30519985 | None:intergenic |
| TTCTTAGTTGTATAGCCACA+AGG | 0.593620 | 4_2:+30519836 | Msa0597750:CDS |
| AAGGAGAAGAATTGCCAACA+TGG | 0.596493 | 4_2:-30520176 | None:intergenic |
| CCTGAAATGCAAATCCATGT+TGG | 0.597010 | 4_2:+30520162 | Msa0597750:CDS |
| TTGTCCACTTACACCAGCAT+TGG | 0.606727 | 4_2:-30520316 | None:intergenic |
| AATGAATGAATGCAGGAACA+GGG | 0.611890 | 4_2:+30521146 | Msa0597750:intron |
| AGACAGAGTGCATGTATCTG+AGG | 0.617121 | 4_2:+30522320 | Msa0597750:CDS |
| AAGACAAAAGTTAAACCTTG+TGG | 0.626060 | 4_2:-30519851 | None:intergenic |
| ACAATACACAAGAAGAATGG+AGG | 0.627108 | 4_2:+30523153 | Msa0597750:CDS |
| TGCTGAACATTACTGATCTG+AGG | 0.630618 | 4_2:-30520354 | None:intergenic |
| ATGGATTAGAGTGCTATACT+CGG | 0.633660 | 4_2:+30521566 | Msa0597750:CDS |
| CCTTATGTGGATGTCTCTGG+TGG | 0.643613 | 4_2:+30520195 | Msa0597750:CDS |
| ATTTGAAGAAGGAACTGCAG+AGG | 0.643963 | 4_2:-30523033 | None:intergenic |
| TTAGTGATTAGTACCATGGA+AGG | 0.644811 | 4_2:-30521280 | None:intergenic |
| CAATACACAAGAAGAATGGA+GGG | 0.644997 | 4_2:+30523154 | Msa0597750:CDS |
| AATGAATGCAGGAACAGGGG+AGG | 0.651251 | 4_2:+30521150 | Msa0597750:intron |
| AGTGGACAAGCATTTAAGCA+TGG | 0.654972 | 4_2:+30520330 | Msa0597750:CDS |
| ATGAATGAATGCAGGAACAG+GGG | 0.664260 | 4_2:+30521147 | Msa0597750:intron |
| TCACTGGATAGATAAGGACA+GGG | 0.669630 | 4_2:-30522470 | None:intergenic |
| AATTCACCAGAGACCAAGAG+AGG | 0.694700 | 4_2:+30521598 | Msa0597750:CDS |
| TGCTGTCTAAAGTCATGAGG+TGG | 0.702388 | 4_2:-30523279 | None:intergenic |
| GGACAATCACAAACTCATGG+AGG | 0.704886 | 4_2:+30520108 | Msa0597750:CDS |
| TGATGCTGTCTAAAGTCATG+AGG | 0.718475 | 4_2:-30523282 | None:intergenic |
| CAAGTCCTCCAAGAACACTG+TGG | 0.796936 | 4_2:-30521210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATTATTATTATAA+TGG | - | chr4_2:30520767-30520786 | None:intergenic | 0.0% |
| !!! | TAATAATAATAATATTTTTT+TGG | + | chr4_2:30520770-30520789 | Msa0597750:intron | 0.0% |
| !!! | AATAATAATAATATTTTTTT+GGG | + | chr4_2:30520771-30520790 | Msa0597750:intron | 0.0% |
| !!! | TTTTATAGAAAAATTTTAGT+AGG | + | chr4_2:30520485-30520504 | Msa0597750:intron | 10.0% |
| !!! | TTTGTATTTTTATTTTTTTG+TGG | + | chr4_2:30521947-30521966 | Msa0597750:intron | 10.0% |
| !!! | AATTTTTATTAGATATCACT+TGG | - | chr4_2:30521525-30521544 | None:intergenic | 15.0% |
| !! | ATTATATTGTTTATTTATGC+AGG | + | chr4_2:30522218-30522237 | Msa0597750:intron | 15.0% |
| !!! | TATTTATTTTTATACTGAAG+TGG | + | chr4_2:30522714-30522733 | Msa0597750:intron | 15.0% |
| !!! | TTGTTTTTTGAAATATTCTT+TGG | - | chr4_2:30523256-30523275 | None:intergenic | 15.0% |
| !! | TAAAATGAGAATATCTATTA+TGG | + | chr4_2:30523309-30523328 | Msa0597750:three_prime_UTR | 15.0% |
| !! | TAGATTTATAAAAATATGCA+TGG | + | chr4_2:30523424-30523443 | Msa0597750:intron | 15.0% |
| !!! | AAAGAAACTCATTTTCTTTT+TGG | - | chr4_2:30519773-30519792 | None:intergenic | 20.0% |
| !! | AAAAAGAAAATGAGTTTCTT+TGG | + | chr4_2:30519772-30519791 | Msa0597750:exon | 20.0% |
| !!! | GAAGTGTTTTTAATGAAAAA+GGG | - | chr4_2:30519885-30519904 | None:intergenic | 20.0% |
| !! | AATAAAACATATATGGCATA+TGG | + | chr4_2:30520032-30520051 | Msa0597750:CDS | 20.0% |
| !! | ATAAAACATATATGGCATAT+GGG | + | chr4_2:30520033-30520052 | Msa0597750:CDS | 20.0% |
| !! | AATATATACCATATTGAGAA+GGG | + | chr4_2:30520416-30520435 | Msa0597750:intron | 20.0% |
| !!! | TTTTCAATGTTTGAATCTTT+AGG | + | chr4_2:30520521-30520540 | Msa0597750:intron | 20.0% |
| !! | TTAATTGATTGGTAAGTTAA+GGG | - | chr4_2:30520561-30520580 | None:intergenic | 20.0% |
| !!! | ATATTGTCTTTTGTAAAATG+AGG | + | chr4_2:30520843-30520862 | Msa0597750:intron | 20.0% |
| !!! | ATTCTGAACATTCTTTTTTA+AGG | + | chr4_2:30520948-30520967 | Msa0597750:intron | 20.0% |
| !!! | TTCTCTTTTGACTAAATAAA+AGG | + | chr4_2:30521118-30521137 | Msa0597750:intron | 20.0% |
| !!! | TTTGTTATAATAAACAGAAC+TGG | + | chr4_2:30521660-30521679 | Msa0597750:CDS | 20.0% |
| !! | ACAAATTGATATAGTAAATC+AGG | + | chr4_2:30521800-30521819 | Msa0597750:CDS | 20.0% |
| !! | ATAGTTGCTTAATTAATTAG+CGG | + | chr4_2:30521876-30521895 | Msa0597750:intron | 20.0% |
| !!! | GTATTTTTATTTTTTTGTGG+TGG | + | chr4_2:30521950-30521969 | Msa0597750:intron | 20.0% |
| !! | GCATAAAATATATAAGGTTA+GGG | - | chr4_2:30521989-30522008 | None:intergenic | 20.0% |
| !! | TGCATAAAATATATAAGGTT+AGG | - | chr4_2:30521990-30522009 | None:intergenic | 20.0% |
| !! | GACAATGCATAAAATATATA+AGG | - | chr4_2:30521995-30522014 | None:intergenic | 20.0% |
| !!! | ATATACTTTGATTTTTTCAC+TGG | - | chr4_2:30522489-30522508 | None:intergenic | 20.0% |
| !! | TCAATACTTAGAATTTACTA+AGG | + | chr4_2:30522525-30522544 | Msa0597750:intron | 20.0% |
| !!! | TTTAATTTATGCGAAATAGA+AGG | + | chr4_2:30522859-30522878 | Msa0597750:intron | 20.0% |
| !!! | TCTTTTTGGTATTAGATAGA+AGG | - | chr4_2:30519759-30519778 | None:intergenic | 25.0% |
| !! | TTTTAATGAAAAAGGGATGT+TGG | - | chr4_2:30519878-30519897 | None:intergenic | 25.0% |
| !!! | GGAAGTGTTTTTAATGAAAA+AGG | - | chr4_2:30519886-30519905 | None:intergenic | 25.0% |
| ! | CAACCACAATAAAACATATA+TGG | + | chr4_2:30520025-30520044 | Msa0597750:CDS | 25.0% |
| !!! | ATGCCATATATGTTTTATTG+TGG | - | chr4_2:30520031-30520050 | None:intergenic | 25.0% |
| ! | GAATATATACCATATTGAGA+AGG | + | chr4_2:30520415-30520434 | Msa0597750:intron | 25.0% |
| ! | CTTAATTGATTGGTAAGTTA+AGG | - | chr4_2:30520562-30520581 | None:intergenic | 25.0% |
| ! | ACACAAACAACTTAATTGAT+TGG | - | chr4_2:30520572-30520591 | None:intergenic | 25.0% |
| ! | TTTGTAAAATGAGGATTCAT+TGG | + | chr4_2:30520852-30520871 | Msa0597750:intron | 25.0% |
| ! | AACAAGGTCAAATGAATTAT+TGG | - | chr4_2:30521027-30521046 | None:intergenic | 25.0% |
| ! | CTCATTTACAACCAATAATT+AGG | - | chr4_2:30521067-30521086 | None:intergenic | 25.0% |
| !!! | TCTTTTGACTAAATAAAAGG+TGG | + | chr4_2:30521121-30521140 | Msa0597750:intron | 25.0% |
| ! | CATACAATACACAAAATTGT+AGG | - | chr4_2:30521402-30521421 | None:intergenic | 25.0% |
| ! | AAAATTGTATTGTTTGCAAC+AGG | + | chr4_2:30521539-30521558 | Msa0597750:intron | 25.0% |
| ! | AATGCATTTGATTACATTGA+AGG | + | chr4_2:30521636-30521655 | Msa0597750:CDS | 25.0% |
| !! | TTGTTCAAAGTTGAAGTATT+TGG | - | chr4_2:30521784-30521803 | None:intergenic | 25.0% |
| ! | ATTGATATAGTAAATCAGGT+TGG | + | chr4_2:30521804-30521823 | Msa0597750:intron | 25.0% |
| ! | AAATCTTTAGATTGAGTTCT+TGG | - | chr4_2:30521833-30521852 | None:intergenic | 25.0% |
| !!! | AAACTGTGTATTTTGCTTTT+TGG | - | chr4_2:30522405-30522424 | None:intergenic | 25.0% |
| !!! | ATTTTTTCACTGGATAGATA+AGG | - | chr4_2:30522479-30522498 | None:intergenic | 25.0% |
| !!! | AGTAAATTCTAAGTATTGAG+TGG | - | chr4_2:30522524-30522543 | None:intergenic | 25.0% |
| !! | ATGACATGTGTGAAATTTTT+AGG | + | chr4_2:30522612-30522631 | Msa0597750:intron | 25.0% |
| !!! | GTTTTGGTTTTAAAAATGTG+AGG | - | chr4_2:30522657-30522676 | None:intergenic | 25.0% |
| !! | GTGAAAAATACAAATGGTTT+TGG | - | chr4_2:30522673-30522692 | None:intergenic | 25.0% |
| !! | TAAAAAAACCAACATTGACT+GGG | - | chr4_2:30522696-30522715 | None:intergenic | 25.0% |
| ! | ATAAAAAAACCAACATTGAC+TGG | - | chr4_2:30522697-30522716 | None:intergenic | 25.0% |
| ! | AAAAAACCTCAAAGTTGAAT+AGG | + | chr4_2:30522768-30522787 | Msa0597750:intron | 25.0% |
| ! | AAAAACCTCAAAGTTGAATA+GGG | + | chr4_2:30522769-30522788 | Msa0597750:intron | 25.0% |
| !!! | AATGTATATATGCTTTTTGC+AGG | + | chr4_2:30522946-30522965 | Msa0597750:intron | 25.0% |
| ! | AAGTAGAAAATATCTTCATC+TGG | - | chr4_2:30522999-30523018 | None:intergenic | 25.0% |
| !! | TGAAGATATTTTCTACTTAG+TGG | + | chr4_2:30523001-30523020 | Msa0597750:CDS | 25.0% |
| CAAAACATTGTATTCCTCAA+AGG | + | chr4_2:30519799-30519818 | Msa0597750:CDS | 30.0% | |
| ACAAGATAATGAATCCTTTG+AGG | - | chr4_2:30519816-30519835 | None:intergenic | 30.0% | |
| AAGACAAAAGTTAAACCTTG+TGG | - | chr4_2:30519854-30519873 | None:intergenic | 30.0% | |
| TTAAAAACACTTCCACTAGA+AGG | + | chr4_2:30519892-30519911 | Msa0597750:CDS | 30.0% | |
| ! | AATCTCTTGATGCTTTGTTA+AGG | - | chr4_2:30519942-30519961 | None:intergenic | 30.0% |
| !! | AACAAAGCATCAAGAGATTT+TGG | + | chr4_2:30519943-30519962 | Msa0597750:CDS | 30.0% |
| TAGATACCAATATCATCCTA+TGG | + | chr4_2:30519969-30519988 | Msa0597750:CDS | 30.0% | |
| !! | GCAATATCAGAAACTGATTT+TGG | - | chr4_2:30520006-30520025 | None:intergenic | 30.0% |
| !! | TTGCATGAGACTTTAAGATA+TGG | + | chr4_2:30520237-30520256 | Msa0597750:CDS | 30.0% |
| !! | TGCATGAGACTTTAAGATAT+GGG | + | chr4_2:30520238-30520257 | Msa0597750:CDS | 30.0% |
| AAATAATCTGTCCATGATCT+TGG | - | chr4_2:30520270-30520289 | None:intergenic | 30.0% | |
| GATTATTTGCATCTAACAGT+TGG | + | chr4_2:30520282-30520301 | Msa0597750:CDS | 30.0% | |
| ! | TTTCTTTTCCCTTCTCAATA+TGG | - | chr4_2:30520427-30520446 | None:intergenic | 30.0% |
| TTTGTTTGTAGGGATTGAAA+TGG | + | chr4_2:30520606-30520625 | Msa0597750:intron | 30.0% | |
| CTGACCTACTTCAAAAATTT+AGG | + | chr4_2:30520662-30520681 | Msa0597750:intron | 30.0% | |
| ATCCATCAATATTACAAGAG+CGG | - | chr4_2:30520741-30520760 | None:intergenic | 30.0% | |
| CACTTATTATAAGACACAGA+TGG | + | chr4_2:30520816-30520835 | Msa0597750:intron | 30.0% | |
| !!! | ACACATTTTTTACGTCAACA+AGG | - | chr4_2:30520879-30520898 | None:intergenic | 30.0% |
| !!! | TTATTCACACGTTAGTTTTC+AGG | + | chr4_2:30520919-30520938 | Msa0597750:intron | 30.0% |
| ! | ATTGTTCTTTAGCTTACTAG+CGG | + | chr4_2:30520976-30520995 | Msa0597750:intron | 30.0% |
| GAAAACGTGTACCTAATTAT+TGG | + | chr4_2:30521053-30521072 | Msa0597750:intron | 30.0% | |
| ! | TTTTGTAAGCACCATGATAA+AGG | + | chr4_2:30521326-30521345 | Msa0597750:intron | 30.0% |
| TTTGTAAGCACCATGATAAA+GGG | + | chr4_2:30521327-30521346 | Msa0597750:intron | 30.0% | |
| !!! | TACTCAGTTTTTTACACAAG+AGG | + | chr4_2:30521428-30521447 | Msa0597750:intron | 30.0% |
| !!! | TAAAGTTGTTGTCATTTTCC+AGG | - | chr4_2:30521472-30521491 | None:intergenic | 30.0% |
| ATTGTTTGCAACAGGTAAAA+TGG | + | chr4_2:30521547-30521566 | Msa0597750:intron | 30.0% | |
| ! | TGAAGTATTTGGCTAATTCT+AGG | - | chr4_2:30521773-30521792 | None:intergenic | 30.0% |
| CTGATAGAGTAATAGGATAT+TGG | + | chr4_2:30522116-30522135 | Msa0597750:intron | 30.0% | |
| TGTGACTTCAGTTTGAAAAA+GGG | - | chr4_2:30522286-30522305 | None:intergenic | 30.0% | |
| ATGTGACTTCAGTTTGAAAA+AGG | - | chr4_2:30522287-30522306 | None:intergenic | 30.0% | |
| ! | AAAAAAACCAACATTGACTG+GGG | - | chr4_2:30522695-30522714 | None:intergenic | 30.0% |
| !!! | AGCTCAGTTTTAAAAATGAG+CGG | + | chr4_2:30522828-30522847 | Msa0597750:intron | 30.0% |
| !! | TATATATGCTTTTTGCAGGT+GGG | + | chr4_2:30522950-30522969 | Msa0597750:intron | 30.0% |
| TACTGTCAAAGAGAAAATCT+TGG | + | chr4_2:30523107-30523126 | Msa0597750:CDS | 30.0% | |
| !!! | TTTTGAAATATTCTTTGGCC+AGG | - | chr4_2:30523251-30523270 | None:intergenic | 30.0% |
| GCTTAGACATGTTTGAATAT+AGG | + | chr4_2:30523359-30523378 | Msa0597750:three_prime_UTR | 30.0% | |
| GATAGTGCACAGAAAAAAAA+TGG | + | chr4_2:30523394-30523413 | Msa0597750:three_prime_UTR | 30.0% | |
| ! | GTATGTCTTTCAAGTAAACT+AGG | + | chr4_2:30523483-30523502 | Msa0597750:three_prime_UTR | 30.0% |
| TTCTTAGTTGTATAGCCACA+AGG | + | chr4_2:30519836-30519855 | Msa0597750:CDS | 35.0% | |
| AAACTCAAATGTCCTTCTAG+TGG | - | chr4_2:30519907-30519926 | None:intergenic | 35.0% | |
| TGGAGGAATTGTGATCAAAA+TGG | + | chr4_2:30520125-30520144 | Msa0597750:CDS | 35.0% | |
| !! | TGAGACTTTAAGATATGGGT+TGG | + | chr4_2:30520242-30520261 | Msa0597750:CDS | 35.0% |
| TATTTGCATCTAACAGTTGG+TGG | + | chr4_2:30520285-30520304 | Msa0597750:CDS | 35.0% | |
| !! | TCACCAATCGATTTGTTTGT+AGG | + | chr4_2:30520595-30520614 | Msa0597750:intron | 35.0% |
| !! | CACCAATCGATTTGTTTGTA+GGG | + | chr4_2:30520596-30520615 | Msa0597750:intron | 35.0% |
| ATCCCTACAAACAAATCGAT+TGG | - | chr4_2:30520601-30520620 | None:intergenic | 35.0% | |
| !!! | TTTTGAAGTAGGTCAGACTT+AGG | - | chr4_2:30520658-30520677 | None:intergenic | 35.0% |
| !!! | GAGGCCTAAATTTTTGAAGT+AGG | - | chr4_2:30520669-30520688 | None:intergenic | 35.0% |
| TACAGATAATAACTAGGCTG+AGG | - | chr4_2:30520688-30520707 | None:intergenic | 35.0% | |
| GCCTAGTTATTATCTGTAGT+AGG | + | chr4_2:30520690-30520709 | Msa0597750:intron | 35.0% | |
| GCCTACTACAGATAATAACT+AGG | - | chr4_2:30520694-30520713 | None:intergenic | 35.0% | |
| ATATTACAAGAGCGGGTAAT+AGG | - | chr4_2:30520733-30520752 | None:intergenic | 35.0% | |
| TCCATCAATATTACAAGAGC+GGG | - | chr4_2:30520740-30520759 | None:intergenic | 35.0% | |
| ! | ACACGTTTTCTATGTCAACA+AGG | - | chr4_2:30521043-30521062 | None:intergenic | 35.0% |
| AATGAATGAATGCAGGAACA+GGG | + | chr4_2:30521146-30521165 | Msa0597750:intron | 35.0% | |
| TTAGTGATTAGTACCATGGA+AGG | - | chr4_2:30521283-30521302 | None:intergenic | 35.0% | |
| CTCATTAGTGATTAGTACCA+TGG | - | chr4_2:30521287-30521306 | None:intergenic | 35.0% | |
| TTGTAAGCACCATGATAAAG+GGG | + | chr4_2:30521328-30521347 | Msa0597750:intron | 35.0% | |
| !! | ATGCAGAAGTTTTAGTGCTA+GGG | - | chr4_2:30521358-30521377 | None:intergenic | 35.0% |
| !! | TATGCAGAAGTTTTAGTGCT+AGG | - | chr4_2:30521359-30521378 | None:intergenic | 35.0% |
| !! | ATGGATTAGAGTGCTATACT+CGG | + | chr4_2:30521566-30521585 | Msa0597750:CDS | 35.0% |
| CTTCAGATATTAACCTCTCT+TGG | - | chr4_2:30521614-30521633 | None:intergenic | 35.0% | |
| ! | TCTGAGACTGATAGAGTAAT+AGG | + | chr4_2:30522109-30522128 | Msa0597750:intron | 35.0% |
| AGACTCTACACTTATCTACA+TGG | + | chr4_2:30522183-30522202 | Msa0597750:intron | 35.0% | |
| ! | CAGTTTGAAAAAGGGTTGAT+CGG | - | chr4_2:30522278-30522297 | None:intergenic | 35.0% |
| AGGTCAAATTGCGTTCAAAA+GGG | + | chr4_2:30522340-30522359 | Msa0597750:CDS | 35.0% | |
| GGTATAAAAAGATTGAGCCA+TGG | - | chr4_2:30522384-30522403 | None:intergenic | 35.0% | |
| ! | AGTTTTGCACAAGTTGTCTT+TGG | + | chr4_2:30522420-30522439 | Msa0597750:CDS | 35.0% |
| ! | GTTTTGCACAAGTTGTCTTT+GGG | + | chr4_2:30522421-30522440 | Msa0597750:CDS | 35.0% |
| ATCCTTACACAAACAAGCAA+TGG | + | chr4_2:30522447-30522466 | Msa0597750:CDS | 35.0% | |
| ACTGGGGTGAAAAATACAAA+TGG | - | chr4_2:30522679-30522698 | None:intergenic | 35.0% | |
| TTTCACCCTATTCAACTTTG+AGG | - | chr4_2:30522777-30522796 | None:intergenic | 35.0% | |
| !! | GTATATATGCTTTTTGCAGG+TGG | + | chr4_2:30522949-30522968 | Msa0597750:intron | 35.0% |
| TTCTTCTTGTGTATTGTGGT+GGG | - | chr4_2:30523150-30523169 | None:intergenic | 35.0% | |
| ATTCTTCTTGTGTATTGTGG+TGG | - | chr4_2:30523151-30523170 | None:intergenic | 35.0% | |
| ACCACAATACACAAGAAGAA+TGG | + | chr4_2:30523150-30523169 | Msa0597750:CDS | 35.0% | |
| TCCATTCTTCTTGTGTATTG+TGG | - | chr4_2:30523154-30523173 | None:intergenic | 35.0% | |
| ACAATACACAAGAAGAATGG+AGG | + | chr4_2:30523153-30523172 | Msa0597750:CDS | 35.0% | |
| CAATACACAAGAAGAATGGA+GGG | + | chr4_2:30523154-30523173 | Msa0597750:CDS | 35.0% | |
| TCACTGCCATAGGATGATAT+TGG | - | chr4_2:30519978-30519997 | None:intergenic | 40.0% | |
| CAAGGACAATCACAAACTCA+TGG | + | chr4_2:30520105-30520124 | Msa0597750:CDS | 40.0% | |
| CCAACATGGATTTGCATTTC+AGG | - | chr4_2:30520165-30520184 | None:intergenic | 40.0% | |
| CCTGAAATGCAAATCCATGT+TGG | + | chr4_2:30520162-30520181 | Msa0597750:CDS | 40.0% | |
| AAGGAGAAGAATTGCCAACA+TGG | - | chr4_2:30520179-30520198 | None:intergenic | 40.0% | |
| TGGCAATTCTTCTCCTTATG+TGG | + | chr4_2:30520182-30520201 | Msa0597750:CDS | 40.0% | |
| AGTGGACAAGCATTTAAGCA+TGG | + | chr4_2:30520330-30520349 | Msa0597750:CDS | 40.0% | |
| TGCTGAACATTACTGATCTG+AGG | - | chr4_2:30520357-30520376 | None:intergenic | 40.0% | |
| ! | TGTAGGGATTGAAATGGACT+AGG | + | chr4_2:30520612-30520631 | Msa0597750:intron | 40.0% |
| ACCCGCTCTTGTAATATTGA+TGG | + | chr4_2:30520736-30520755 | Msa0597750:intron | 40.0% | |
| CAATGAATGAATGCAGGAAC+AGG | + | chr4_2:30521145-30521164 | Msa0597750:intron | 40.0% | |
| ATGAATGAATGCAGGAACAG+GGG | + | chr4_2:30521147-30521166 | Msa0597750:intron | 40.0% | |
| CACGAGTTATAATGCCAAAC+TGG | - | chr4_2:30521237-30521256 | None:intergenic | 40.0% | |
| !! | ATATCACTTGGTGCTTAGAG+GGG | - | chr4_2:30521513-30521532 | None:intergenic | 40.0% |
| !! | GATATCACTTGGTGCTTAGA+GGG | - | chr4_2:30521514-30521533 | None:intergenic | 40.0% |
| !! | AGATATCACTTGGTGCTTAG+AGG | - | chr4_2:30521515-30521534 | None:intergenic | 40.0% |
| TATTAACCTCTCTTGGTCTC+TGG | - | chr4_2:30521607-30521626 | None:intergenic | 40.0% | |
| ! | GAACTGGTCTGCTAAATAAC+TGG | + | chr4_2:30521676-30521695 | Msa0597750:CDS | 40.0% |
| !! | TTGAAATGACTAGCTTGGAC+TGG | - | chr4_2:30521726-30521745 | None:intergenic | 40.0% |
| ! | CTGACTTGAAATGACTAGCT+TGG | - | chr4_2:30521731-30521750 | None:intergenic | 40.0% |
| ! | GCTAGTCATTTCAAGTCAGA+TGG | + | chr4_2:30521732-30521751 | Msa0597750:CDS | 40.0% |
| !!! | TTATTTTTTTGTGGTGGCCG+AGG | + | chr4_2:30521956-30521975 | Msa0597750:intron | 40.0% |
| AAGGTTAGGGATTCAAACCT+CGG | - | chr4_2:30521976-30521995 | None:intergenic | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | - | chr4_2:30522017-30522036 | None:intergenic | 40.0% |
| GAGGTCAAATTGCGTTCAAA+AGG | + | chr4_2:30522339-30522358 | Msa0597750:CDS | 40.0% | |
| AATTGCGTTCAAAAGGGTTG+TGG | + | chr4_2:30522346-30522365 | Msa0597750:CDS | 40.0% | |
| ATTGCGTTCAAAAGGGTTGT+GGG | + | chr4_2:30522347-30522366 | Msa0597750:CDS | 40.0% | |
| AAAAGATTGAGCCATGGATG+TGG | - | chr4_2:30522378-30522397 | None:intergenic | 40.0% | |
| TCACTGGATAGATAAGGACA+GGG | - | chr4_2:30522473-30522492 | None:intergenic | 40.0% | |
| TTCACTGGATAGATAAGGAC+AGG | - | chr4_2:30522474-30522493 | None:intergenic | 40.0% | |
| ! | TTTTTCACCCCAGTCAATGT+TGG | + | chr4_2:30522685-30522704 | Msa0597750:intron | 40.0% |
| ATTTGAAGAAGGAACTGCAG+AGG | - | chr4_2:30523036-30523055 | None:intergenic | 40.0% | |
| TCTGCAGTTCCTTCTTCAAA+TGG | + | chr4_2:30523035-30523054 | Msa0597750:CDS | 40.0% | |
| CCATCAGTTCCATTTGAAGA+AGG | - | chr4_2:30523047-30523066 | None:intergenic | 40.0% | |
| CCTTCTTCAAATGGAACTGA+TGG | + | chr4_2:30523044-30523063 | Msa0597750:CDS | 40.0% | |
| TCTTCTTGTGTATTGTGGTG+GGG | - | chr4_2:30523149-30523168 | None:intergenic | 40.0% | |
| !! | GGTCCATTTTGGTACTAAGT+GGG | + | chr4_2:30523175-30523194 | Msa0597750:CDS | 40.0% |
| TCTCCCACTTAGTACCAAAA+TGG | - | chr4_2:30523181-30523200 | None:intergenic | 40.0% | |
| ! | CAGGAGCAAGTATTGCAAAT+GGG | - | chr4_2:30523232-30523251 | None:intergenic | 40.0% |
| ! | TGATGCTGTCTAAAGTCATG+AGG | - | chr4_2:30523285-30523304 | None:intergenic | 40.0% |
| CTGTGCACTATCAATTTGTG+TGG | - | chr4_2:30523386-30523405 | None:intergenic | 40.0% | |
| TTTGGATGCATCACTGCCAT+AGG | - | chr4_2:30519988-30520007 | None:intergenic | 45.0% | |
| GGACATGGACATTCACTTCA+AGG | + | chr4_2:30520087-30520106 | Msa0597750:CDS | 45.0% | |
| GGACAATCACAAACTCATGG+AGG | + | chr4_2:30520108-30520127 | Msa0597750:CDS | 45.0% | |
| TCTCCTTATGTGGATGTCTC+TGG | + | chr4_2:30520192-30520211 | Msa0597750:CDS | 45.0% | |
| ! | ATGTCTCTGGTGGTGAATTG+TGG | + | chr4_2:30520205-30520224 | Msa0597750:CDS | 45.0% |
| TTGTCCACTTACACCAGCAT+TGG | - | chr4_2:30520319-30520338 | None:intergenic | 45.0% | |
| CAGCAGCTTGAGATTGTTAC+AGG | + | chr4_2:30520372-30520391 | Msa0597750:CDS | 45.0% | |
| GGTGGTCAATGAATGAATGC+AGG | + | chr4_2:30521139-30521158 | Msa0597750:intron | 45.0% | |
| ! | ATTAGTACCATGGAAGGTGC+TGG | - | chr4_2:30521277-30521296 | None:intergenic | 45.0% |
| TAGGGTTGTCCCCTTTATCA+TGG | - | chr4_2:30521340-30521359 | None:intergenic | 45.0% | |
| TGCATACGCAGAGTTTCGAA+AGG | + | chr4_2:30521373-30521392 | Msa0597750:intron | 45.0% | |
| GCATACGCAGAGTTTCGAAA+GGG | + | chr4_2:30521374-30521393 | Msa0597750:intron | 45.0% | |
| CATACGCAGAGTTTCGAAAG+GGG | + | chr4_2:30521375-30521394 | Msa0597750:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4_2:30521439-30521458 | Msa0597750:intron | 45.0% |
| ! | CATTTTCCAGGTTCAAGTCC+TGG | - | chr4_2:30521460-30521479 | None:intergenic | 45.0% |
| AATTCACCAGAGACCAAGAG+AGG | + | chr4_2:30521598-30521617 | Msa0597750:CDS | 45.0% | |
| ! | TAGCTTGGACTGGATCTTGT+GGG | - | chr4_2:30521716-30521735 | None:intergenic | 45.0% |
| AGACAGAGTGCATGTATCTG+AGG | + | chr4_2:30522320-30522339 | Msa0597750:CDS | 45.0% | |
| GGCCATTGCTTGTTTGTGTA+AGG | - | chr4_2:30522452-30522471 | None:intergenic | 45.0% | |
| ! | GAAGAATGGAGGGTCCATTT+TGG | + | chr4_2:30523164-30523183 | Msa0597750:CDS | 45.0% |
| !! | GGGTCCATTTTGGTACTAAG+TGG | + | chr4_2:30523174-30523193 | Msa0597750:CDS | 45.0% |
| ! | CCAGGAGCAAGTATTGCAAA+TGG | - | chr4_2:30523233-30523252 | None:intergenic | 45.0% |
| CCATTTGCAATACTTGCTCC+TGG | + | chr4_2:30523230-30523249 | Msa0597750:CDS | 45.0% | |
| ! | TGCTGTCTAAAGTCATGAGG+TGG | - | chr4_2:30523282-30523301 | None:intergenic | 45.0% |
| !! | TAAAAAAAAAAAAATATGAA+TGG | + | chr4_2:30523452-30523471 | Msa0597750:intron | 5.0% |
| CATCTCACTGTTGCAGCAAG+AGG | + | chr4_2:30520066-30520085 | Msa0597750:CDS | 50.0% | |
| ACTGTTGCAGCAAGAGGACA+TGG | + | chr4_2:30520072-30520091 | Msa0597750:CDS | 50.0% | |
| CCACCAGAGACATCCACATA+AGG | - | chr4_2:30520198-30520217 | None:intergenic | 50.0% | |
| CCTTATGTGGATGTCTCTGG+TGG | + | chr4_2:30520195-30520214 | Msa0597750:CDS | 50.0% | |
| !! | ATGGGTTGGCACCAAGATCA+TGG | + | chr4_2:30520256-30520275 | Msa0597750:CDS | 50.0% |
| CTCTCCAATGCTGGTGTAAG+TGG | + | chr4_2:30520312-30520331 | Msa0597750:CDS | 50.0% | |
| !! | GGGATTGAAATGGACTAGGC+CGG | + | chr4_2:30520616-30520635 | Msa0597750:intron | 50.0% |
| !! | GGATTGAAATGGACTAGGCC+GGG | + | chr4_2:30520617-30520636 | Msa0597750:intron | 50.0% |
| AATGAATGCAGGAACAGGGG+AGG | + | chr4_2:30521150-30521169 | Msa0597750:intron | 50.0% | |
| GAGCTCTTCCACAGTGTTCT+TGG | + | chr4_2:30521202-30521221 | Msa0597750:CDS | 50.0% | |
| CTCTTCCACAGTGTTCTTGG+AGG | + | chr4_2:30521205-30521224 | Msa0597750:CDS | 50.0% | |
| CAAGTCCTCCAAGAACACTG+TGG | - | chr4_2:30521213-30521232 | None:intergenic | 50.0% | |
| CACAGTGTTCTTGGAGGACT+TGG | + | chr4_2:30521211-30521230 | Msa0597750:CDS | 50.0% | |
| TCTTGAACCAGCACCTTCCA+TGG | + | chr4_2:30521267-30521286 | Msa0597750:CDS | 50.0% | |
| CTGTTTCCAGGACTTGAACC+TGG | + | chr4_2:30521451-30521470 | Msa0597750:intron | 50.0% | |
| ! | GACTGGATCTTGTGGGTTGA+AGG | - | chr4_2:30521709-30521728 | None:intergenic | 50.0% |
| ! | CTAGCTTGGACTGGATCTTG+TGG | - | chr4_2:30521717-30521736 | None:intergenic | 50.0% |
| CCTCGTGAGCTTAACTCAGT+TGG | - | chr4_2:30522022-30522041 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | + | chr4_2:30522019-30522038 | Msa0597750:intron | 50.0% | |
| TGTGGGATGTTCCACATCCA+TGG | + | chr4_2:30522364-30522383 | Msa0597750:CDS | 50.0% | |
| !! | TGAAATGGACTAGGCCGGGT+CGG | + | chr4_2:30520621-30520640 | Msa0597750:intron | 55.0% |
| AGGCCTTACAAATCCCGACC+CGG | - | chr4_2:30520638-30520657 | None:intergenic | 55.0% | |
| CTTGGAGGACTTGGCCAGTT+TGG | + | chr4_2:30521220-30521239 | Msa0597750:CDS | 55.0% | |
| GGTGGCACTCTCTCCAATGC+TGG | + | chr4_2:30520303-30520322 | Msa0597750:CDS | 60.0% | |
| !! | GAAATGGACTAGGCCGGGTC+GGG | + | chr4_2:30520622-30520641 | Msa0597750:intron | 60.0% |
| AGGCCGGGTCGGGATTTGTA+AGG | + | chr4_2:30520632-30520651 | Msa0597750:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 30519742 | 30523550 | 30519742 | ID=Msa0597750;Name=Msa0597750 |
| chr4_2 | mRNA | 30519742 | 30523550 | 30519742 | ID=Msa0597750-mRNA-1;Parent=Msa0597750;Name=Msa0597750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=39|1|1|1|0.8|0.66|6|233|528 |
| chr4_2 | exon | 30519742 | 30520393 | 30519742 | ID=Msa0597750-mRNA-1:exon:7718;Parent=Msa0597750-mRNA-1 |
| chr4_2 | exon | 30521161 | 30521288 | 30521161 | ID=Msa0597750-mRNA-1:exon:7719;Parent=Msa0597750-mRNA-1 |
| chr4_2 | exon | 30521561 | 30521821 | 30521561 | ID=Msa0597750-mRNA-1:exon:7720;Parent=Msa0597750-mRNA-1 |
| chr4_2 | exon | 30522240 | 30522502 | 30522240 | ID=Msa0597750-mRNA-1:exon:7721;Parent=Msa0597750-mRNA-1 |
| chr4_2 | exon | 30522968 | 30523432 | 30522968 | ID=Msa0597750-mRNA-1:exon:7722;Parent=Msa0597750-mRNA-1 |
| chr4_2 | exon | 30523461 | 30523550 | 30523461 | ID=Msa0597750-mRNA-1:exon:7723;Parent=Msa0597750-mRNA-1 |
| chr4_2 | five_prime_UTR | 30519742 | 30519780 | 30519742 | ID=Msa0597750-mRNA-1:five_prime_utr;Parent=Msa0597750-mRNA-1 |
| chr4_2 | CDS | 30519781 | 30520393 | 30519781 | ID=Msa0597750-mRNA-1:cds;Parent=Msa0597750-mRNA-1 |
| chr4_2 | CDS | 30521161 | 30521288 | 30521161 | ID=Msa0597750-mRNA-1:cds;Parent=Msa0597750-mRNA-1 |
| chr4_2 | CDS | 30521561 | 30521821 | 30521561 | ID=Msa0597750-mRNA-1:cds;Parent=Msa0597750-mRNA-1 |
| chr4_2 | CDS | 30522240 | 30522502 | 30522240 | ID=Msa0597750-mRNA-1:cds;Parent=Msa0597750-mRNA-1 |
| chr4_2 | CDS | 30522968 | 30523289 | 30522968 | ID=Msa0597750-mRNA-1:cds;Parent=Msa0597750-mRNA-1 |
| chr4_2 | three_prime_UTR | 30523290 | 30523432 | 30523290 | ID=Msa0597750-mRNA-1:three_prime_utr;Parent=Msa0597750-mRNA-1 |
| chr4_2 | three_prime_UTR | 30523461 | 30523550 | 30523461 | ID=Msa0597750-mRNA-1:three_prime_utr;Parent=Msa0597750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
