Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637550 | XP_003605865.1 | 96.780 | 528 | 17 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637550 | sp|Q9LY71|CKX6_ARATH | 66.730 | 529 | 172 | 3 | 2 | 528 | 7 | 533 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637550 | Msa1009120 | 0.811282 | 7.566972e-51 | -8.615850e-47 |
| Msa0637550 | Msa1182430 | 0.807549 | 4.788337e-50 | -8.615850e-47 |
| Msa0637550 | Msa1347330 | 0.806030 | 1.002768e-49 | -8.615850e-47 |
| Msa0597750 | Msa0637550 | 0.859513 | 3.927779e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637550 | MtrunA17_Chr4g0020621 | 96.780 | 528 | 17 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1063 |
| Msa0637550 | MtrunA17_Chr3g0091141 | 78.788 | 528 | 107 | 2 | 1 | 528 | 25 | 547 | 0.0 | 870 |
| Msa0637550 | MtrunA17_Chr7g0257061 | 67.540 | 496 | 158 | 2 | 33 | 528 | 51 | 543 | 0.0 | 719 |
| Msa0637550 | MtrunA17_Chr3g0141981 | 50.659 | 531 | 246 | 8 | 6 | 527 | 5 | 528 | 0.0 | 530 |
| Msa0637550 | MtrunA17_Chr4g0071111 | 45.981 | 535 | 261 | 11 | 7 | 523 | 3 | 527 | 7.89e-164 | 475 |
| Msa0637550 | MtrunA17_Chr2g0299371 | 48.733 | 513 | 228 | 10 | 36 | 521 | 33 | 537 | 8.13e-163 | 473 |
| Msa0637550 | MtrunA17_Chr1g0150941 | 45.397 | 478 | 241 | 7 | 57 | 523 | 37 | 505 | 3.16e-148 | 435 |
| Msa0637550 | MtrunA17_Chr4g0071121 | 46.817 | 487 | 234 | 10 | 47 | 521 | 44 | 517 | 4.78e-148 | 434 |
| Msa0637550 | MtrunA17_Chr2g0299361 | 42.988 | 328 | 158 | 6 | 202 | 522 | 6 | 311 | 2.14e-86 | 269 |
| Msa0637550 | MtrunA17_Chr2g0299351 | 41.791 | 201 | 99 | 5 | 17 | 205 | 11 | 205 | 1.12e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637550 | AT3G63440.1 | 66.730 | 529 | 172 | 3 | 2 | 528 | 7 | 533 | 0.0 | 743 |
| Msa0637550 | AT2G41510.2 | 65.306 | 539 | 169 | 3 | 1 | 524 | 69 | 604 | 0.0 | 741 |
| Msa0637550 | AT2G41510.1 | 65.306 | 539 | 169 | 3 | 1 | 524 | 7 | 542 | 0.0 | 741 |
| Msa0637550 | AT2G41510.3 | 65.675 | 437 | 132 | 3 | 1 | 422 | 7 | 440 | 0.0 | 590 |
| Msa0637550 | AT1G75450.1 | 52.132 | 516 | 235 | 8 | 15 | 522 | 10 | 521 | 0.0 | 541 |
| Msa0637550 | AT1G75450.2 | 52.031 | 517 | 235 | 9 | 15 | 522 | 6 | 518 | 0.0 | 537 |
| Msa0637550 | AT5G56970.1 | 46.694 | 484 | 243 | 6 | 45 | 523 | 46 | 519 | 3.93e-161 | 468 |
| Msa0637550 | AT5G21482.1 | 46.614 | 502 | 244 | 9 | 39 | 525 | 32 | 524 | 2.39e-159 | 464 |
| Msa0637550 | AT2G19500.1 | 43.451 | 481 | 252 | 8 | 47 | 521 | 35 | 501 | 2.90e-144 | 424 |
| Msa0637550 | AT4G29740.2 | 42.084 | 499 | 264 | 11 | 41 | 522 | 34 | 524 | 9.28e-141 | 416 |
| Msa0637550 | AT5G56970.2 | 45.953 | 383 | 197 | 5 | 45 | 422 | 46 | 423 | 6.48e-121 | 362 |
| Msa0637550 | AT4G29740.1 | 43.108 | 399 | 206 | 10 | 41 | 422 | 34 | 428 | 6.47e-107 | 326 |
| Msa0637550 | AT4G29740.3 | 43.042 | 309 | 157 | 8 | 41 | 334 | 34 | 338 | 1.49e-80 | 256 |
Find 109 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAGCATCAAGAGATTT+TGG | 0.151632 | 4_3:-29403678 | Msa0637550:CDS |
| GCAATATCAGAAACTGATTT+TGG | 0.184314 | 4_3:+29403618 | None:intergenic |
| CCAACATGGATTTGCATTTC+AGG | 0.190881 | 4_3:+29403459 | None:intergenic |
| ATTGATTGCAACAGGTAAAA+TGG | 0.217392 | 4_3:-29402053 | Msa0637550:intron |
| TTGTTCAAAGTTGAAGTATT+TGG | 0.239329 | 4_3:+29401819 | None:intergenic |
| CACAGTGTTCTTGGAGGACT+TGG | 0.249210 | 4_3:-29402389 | Msa0637550:CDS |
| GTATGTCTTTCAAGTAAATT+AGG | 0.261613 | 4_3:-29400146 | Msa0637550:three_prime_UTR |
| GCATCTGCATTTGGTAATTT+AGG | 0.268647 | 4_3:+29400082 | None:intergenic |
| CAGCAGCTTGAGATTGTTAC+AGG | 0.278646 | 4_3:-29403249 | Msa0637550:intron |
| GAGCTCTTCCACAGTGTTCT+TGG | 0.294322 | 4_3:-29402398 | Msa0637550:CDS |
| CTTGGAGGACTTGGCCAGTT+TGG | 0.295539 | 4_3:-29402380 | Msa0637550:CDS |
| TAAAATGAGAATATCTATTA+TGG | 0.296329 | 4_3:-29400291 | Msa0637550:three_prime_UTR |
| GAGGAATGGAGGGTCCATTT+TGG | 0.299258 | 4_3:-29400436 | Msa0637550:CDS |
| TGAAGTATTTGGCTAATTCT+AGG | 0.299387 | 4_3:+29401830 | None:intergenic |
| TTGCATGAGACTTTAAGATA+TGG | 0.306061 | 4_3:-29403384 | Msa0637550:CDS |
| CAACCACAATAAAACATATA+TGG | 0.331867 | 4_3:-29403596 | Msa0637550:CDS |
| TGGAGGAATTGTGATCAAAA+TGG | 0.346402 | 4_3:-29403496 | Msa0637550:CDS |
| TCTCCCACTTAGTACCAAAA+TGG | 0.352161 | 4_3:+29400422 | None:intergenic |
| ACAAATTGATATAGTAAATC+AGG | 0.352610 | 4_3:-29401800 | Msa0637550:intron |
| AATAAAACATATATGGCATA+TGG | 0.360763 | 4_3:-29403589 | Msa0637550:CDS |
| CTTCAGATATTAATTTCTCT+TGG | 0.365872 | 4_3:+29401989 | None:intergenic |
| GACTGGATCTTGTGGGTTGA+AGG | 0.366464 | 4_3:+29401894 | None:intergenic |
| GAACTGGTCTGCTAAATAAC+TGG | 0.373720 | 4_3:-29401924 | Msa0637550:CDS |
| GCTTAGACATGTTTGAATAT+AGG | 0.383669 | 4_3:-29400241 | Msa0637550:three_prime_UTR |
| TGCAACAGGTAAAATGGATT+CGG | 0.386438 | 4_3:-29402047 | Msa0637550:intron |
| GGCCATTGCTTGTTTGTGTA+AGG | 0.388170 | 4_3:+29401151 | None:intergenic |
| TATTAATTTCTCTTGGTCTC+TGG | 0.398859 | 4_3:+29401996 | None:intergenic |
| GAGGTCAAATTGCGTTCAAA+AGG | 0.401323 | 4_3:-29401261 | Msa0637550:CDS |
| TCTCCTTATGTGGATGTCTC+TGG | 0.403316 | 4_3:-29403429 | Msa0637550:CDS |
| CAACTTAGAGCATCTGCATT+TGG | 0.403324 | 4_3:+29400073 | None:intergenic |
| TCACTGCCATAGGATGATAT+TGG | 0.426950 | 4_3:+29403646 | None:intergenic |
| TGGCAATTCTTCTCCTTATG+TGG | 0.427557 | 4_3:-29403439 | Msa0637550:CDS |
| AATCTCTTGATGCTTTGTTA+AGG | 0.429128 | 4_3:+29403682 | None:intergenic |
| TGCATGAGACTTTAAGATAT+GGG | 0.430330 | 4_3:-29403383 | Msa0637550:CDS |
| CTCTCCAATGCTGGTGTAAG+TGG | 0.431781 | 4_3:-29403309 | Msa0637550:CDS |
| TTCACTGGATAGATAAGGAC+AGG | 0.444541 | 4_3:+29401129 | None:intergenic |
| CACGAGTTATAATGCCAAAC+TGG | 0.445835 | 4_3:+29402366 | None:intergenic |
| AAGTAGAAAATATCTTCATC+TGG | 0.447002 | 4_3:+29400604 | None:intergenic |
| GCAACAGGTAAAATGGATTC+GGG | 0.455209 | 4_3:-29402046 | Msa0637550:intron |
| CCTTCTTCAAATGGAACTGA+TGG | 0.460391 | 4_3:-29400556 | Msa0637550:CDS |
| TCTGCAGTTCCTTCTTCAAA+TGG | 0.463091 | 4_3:-29400565 | Msa0637550:CDS |
| TCTTGCACCAGCACCTTCCA+TGG | 0.466945 | 4_3:-29402333 | Msa0637550:intron |
| TTTGTTATAATAAACAGAAC+TGG | 0.466989 | 4_3:-29401940 | Msa0637550:CDS |
| CCAGGAGCAAGTATTGCAAA+TGG | 0.467926 | 4_3:+29400370 | None:intergenic |
| TTCCTCTTGTGTATTGTGGT+GGG | 0.471382 | 4_3:+29400453 | None:intergenic |
| ACAAGATAATGAATCCTTTG+AGG | 0.473217 | 4_3:+29403808 | None:intergenic |
| TCCATTCCTCTTGTGTATTG+TGG | 0.473578 | 4_3:+29400449 | None:intergenic |
| TTAGGAATGTTGACTTTGTA+CGG | 0.474526 | 4_3:-29400128 | Msa0637550:three_prime_UTR |
| AATTGCGTTCAAAAGGGTTG+TGG | 0.474805 | 4_3:-29401254 | Msa0637550:CDS |
| TAGCTTGGACTGGATCTTGT+GGG | 0.477655 | 4_3:+29401887 | None:intergenic |
| CCATCAGTTCCATTTGAAGA+AGG | 0.479234 | 4_3:+29400556 | None:intergenic |
| TACTGTCAAAGAGAAAATCT+TGG | 0.480881 | 4_3:-29400493 | Msa0637550:CDS |
| TGTGGGATGTTCCACATCCA+TGG | 0.484788 | 4_3:-29401236 | Msa0637550:CDS |
| ATTGCGTTCAAAAGGGTTGT+GGG | 0.489469 | 4_3:-29401253 | Msa0637550:CDS |
| AAATAATCTGTCCATGATCT+TGG | 0.489749 | 4_3:+29403354 | None:intergenic |
| CCATTTGCAATACTTGCTCC+TGG | 0.494691 | 4_3:-29400370 | Msa0637550:CDS |
| GGTGGCACTCTCTCCAATGC+TGG | 0.498379 | 4_3:-29403318 | Msa0637550:CDS |
| ATTCCTCTTGTGTATTGTGG+TGG | 0.500861 | 4_3:+29400452 | None:intergenic |
| GGACATGGACATTCACTTCA+AGG | 0.501567 | 4_3:-29403534 | Msa0637550:CDS |
| CTCTTCCACAGTGTTCTTGG+AGG | 0.506567 | 4_3:-29402395 | Msa0637550:CDS |
| ATGGGTTGGCACCAAGATCA+TGG | 0.509378 | 4_3:-29403365 | Msa0637550:CDS |
| CTGACTTGAAATGACTAGCT+TGG | 0.516049 | 4_3:+29401872 | None:intergenic |
| ATAAAACATATATGGCATAT+GGG | 0.519803 | 4_3:-29403588 | Msa0637550:CDS |
| GATTATTTGCATCTAACAGT+TGG | 0.527090 | 4_3:-29403339 | Msa0637550:CDS |
| TAGATACCAATATCATCCTA+TGG | 0.527445 | 4_3:-29403652 | Msa0637550:CDS |
| TCCTCTTGTGTATTGTGGTG+GGG | 0.531895 | 4_3:+29400454 | None:intergenic |
| GCTAGTCATTTCAAGTCAGA+TGG | 0.536306 | 4_3:-29401868 | Msa0637550:CDS |
| CAGGAGCAAGTATTGCAAAT+GGG | 0.537599 | 4_3:+29400371 | None:intergenic |
| CAAAACATTGTATTCCTCAA+AGG | 0.539298 | 4_3:-29403822 | Msa0637550:CDS |
| CATCTCACTGTTGCAGCAAG+AGG | 0.541220 | 4_3:-29403555 | Msa0637550:CDS |
| AGGTCAAATTGCGTTCAAAA+GGG | 0.542126 | 4_3:-29401260 | Msa0637550:CDS |
| ATGTCTCTGGTGGTGAATTG+TGG | 0.542405 | 4_3:-29403416 | Msa0637550:CDS |
| CTAGCTTGGACTGGATCTTG+TGG | 0.545369 | 4_3:+29401886 | None:intergenic |
| AAAAGATTGAGCCATGGATG+TGG | 0.545750 | 4_3:+29401225 | None:intergenic |
| CCACCAGAGACATCCACATA+AGG | 0.546660 | 4_3:+29403426 | None:intergenic |
| TGAGACTTTAAGATATGGGT+TGG | 0.549758 | 4_3:-29403379 | Msa0637550:CDS |
| AAACTCAAATGTCCTTCTAG+TGG | 0.553815 | 4_3:+29403717 | None:intergenic |
| TTGAAATGACTAGCTTGGAC+TGG | 0.554471 | 4_3:+29401877 | None:intergenic |
| TATTTGCATCTAACAGTTGG+TGG | 0.554888 | 4_3:-29403336 | Msa0637550:CDS |
| CTGTGCACTATCAATTTGTG+TGG | 0.576200 | 4_3:+29400217 | None:intergenic |
| CAAGGACAATCACAAACTCA+TGG | 0.581854 | 4_3:-29403516 | Msa0637550:CDS |
| ACTGTTGCAGCAAGAGGACA+TGG | 0.583396 | 4_3:-29403549 | Msa0637550:CDS |
| ATCCTTACACAAACAAGCAA+TGG | 0.584150 | 4_3:-29401153 | Msa0637550:CDS |
| TTTGGATGCATCACTGCCAT+AGG | 0.590081 | 4_3:+29403636 | None:intergenic |
| TTCTTAGTTGTATAGCCACA+AGG | 0.593620 | 4_3:-29403785 | Msa0637550:CDS |
| AATGCATTTGACTACATCGA+AGG | 0.596425 | 4_3:-29401964 | Msa0637550:CDS |
| AAGGAGAAGAATTGCCAACA+TGG | 0.596493 | 4_3:+29403445 | None:intergenic |
| CCTGAAATGCAAATCCATGT+TGG | 0.597010 | 4_3:-29403459 | Msa0637550:CDS |
| ACCACAATACACAAGAGGAA+TGG | 0.598275 | 4_3:-29400450 | Msa0637550:CDS |
| ACAATACACAAGAGGAATGG+AGG | 0.603408 | 4_3:-29400447 | Msa0637550:CDS |
| TTGTCCACTTACACCAGCAT+TGG | 0.606727 | 4_3:+29403305 | None:intergenic |
| AATGAATGAATGCAGGAACA+GGG | 0.611890 | 4_3:-29402454 | Msa0637550:intron |
| AGACAGAGTGCATGTATCTG+AGG | 0.617121 | 4_3:-29401280 | Msa0637550:CDS |
| ATTAGTACCATGGAAGGTGC+TGG | 0.617701 | 4_3:+29402326 | None:intergenic |
| GCCCCACCACAATACACAAG+AGG | 0.621628 | 4_3:-29400455 | Msa0637550:CDS |
| AAGACAAAAGTTAAACCTTG+TGG | 0.626060 | 4_3:+29403770 | None:intergenic |
| TGCTGAACATTACTGATCTG+AGG | 0.630618 | 4_3:+29403267 | None:intergenic |
| CAATACACAAGAGGAATGGA+GGG | 0.637299 | 4_3:-29400446 | Msa0637550:CDS |
| CCTTATGTGGATGTCTCTGG+TGG | 0.643613 | 4_3:-29403426 | Msa0637550:CDS |
| ATTTGAAGAAGGAACTGCAG+AGG | 0.643963 | 4_3:+29400567 | None:intergenic |
| TTAGTGATTAGTACCATGGA+AGG | 0.644811 | 4_3:+29402320 | None:intergenic |
| AATGAATGCAGGAACAGGGG+AGG | 0.651251 | 4_3:-29402450 | Msa0637550:intron |
| ATGAATGAATGCAGGAACAG+GGG | 0.664260 | 4_3:-29402453 | Msa0637550:intron |
| TCACTGGATAGATAAGGACA+GGG | 0.669630 | 4_3:+29401130 | None:intergenic |
| AGTGGACAAGCATTTAAGCA+CGG | 0.684127 | 4_3:-29403291 | Msa0637550:CDS |
| TGCTGTCTAAAGTCATGAGG+TGG | 0.702388 | 4_3:+29400321 | None:intergenic |
| GGACAATCACAAACTCATGG+AGG | 0.704886 | 4_3:-29403513 | Msa0637550:CDS |
| TGATGCTGTCTAAAGTCATG+AGG | 0.718475 | 4_3:+29400318 | None:intergenic |
| CAAGTCCTCCAAGAACACTG+TGG | 0.796936 | 4_3:+29402390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTATTATTATTATAA+TGG | + | chr4_3:29401109-29401128 | None:intergenic | 0.0% |
| !!! | TTTTATAGAAAAAATTTAGT+AGG | - | chr4_3:29400818-29400837 | Msa0637550:intron | 10.0% |
| !!! | TTTGTATTTTTATTTTTTTG+TGG | - | chr4_3:29402301-29402320 | Msa0637550:intron | 10.0% |
| !! | TAGATTTATAAAAATATGAT+AGG | - | chr4_3:29403777-29403796 | Msa0637550:CDS | 10.0% |
| !!! | AATTTTTATTAGATATCACT+TGG | + | chr4_3:29401879-29401898 | None:intergenic | 15.0% |
| !! | ATTATATTGTTTATTTATGC+AGG | - | chr4_3:29402572-29402591 | Msa0637550:intron | 15.0% |
| !!! | TATTTATTTTTATACTGAAG+TGG | - | chr4_3:29403068-29403087 | Msa0637550:intron | 15.0% |
| !!! | TTGTTTTTTGAAATATTCTT+TGG | + | chr4_3:29403610-29403629 | None:intergenic | 15.0% |
| !! | TAAAATGAGAATATCTATTA+TGG | - | chr4_3:29403663-29403682 | Msa0637550:CDS | 15.0% |
| !!! | AAAGAAACTCATTTTCTTTT+TGG | + | chr4_3:29400106-29400125 | None:intergenic | 20.0% |
| !! | AAAAAGAAAATGAGTTTCTT+TGG | - | chr4_3:29400105-29400124 | Msa0637550:three_prime_UTR | 20.0% |
| !!! | GAAGTGTTTTTAATGAAAAA+GGG | + | chr4_3:29400218-29400237 | None:intergenic | 20.0% |
| !! | AATAAAACATATATGGCATA+TGG | - | chr4_3:29400365-29400384 | Msa0637550:CDS | 20.0% |
| !! | ATAAAACATATATGGCATAT+GGG | - | chr4_3:29400366-29400385 | Msa0637550:CDS | 20.0% |
| !! | AATATATACCATATTGAGAA+GGG | - | chr4_3:29400749-29400768 | Msa0637550:intron | 20.0% |
| !! | TAGACCTTATAAAGTTATAA+AGG | + | chr4_3:29400980-29400999 | None:intergenic | 20.0% |
| !!! | ATATTGTCTTTTGTAAAATG+AGG | - | chr4_3:29401195-29401214 | Msa0637550:CDS | 20.0% |
| !!! | ATTCTAAACCTTCTTTTTTA+AGG | - | chr4_3:29401302-29401321 | Msa0637550:CDS | 20.0% |
| !! | AATAAAGACCTTAAAAAAGA+AGG | + | chr4_3:29401313-29401332 | None:intergenic | 20.0% |
| !!! | TTCTCTTTTGACTAAATAAA+AGG | - | chr4_3:29401472-29401491 | Msa0637550:intron | 20.0% |
| !!! | TTTGTTATAATAAACAGAAC+TGG | - | chr4_3:29402014-29402033 | Msa0637550:CDS | 20.0% |
| !! | ACAAATTGATATAGTAAATC+AGG | - | chr4_3:29402154-29402173 | Msa0637550:intron | 20.0% |
| !! | ATAGTTGCTTAATTAATTAG+CGG | - | chr4_3:29402230-29402249 | Msa0637550:intron | 20.0% |
| !!! | GTATTTTTATTTTTTTGTGG+TGG | - | chr4_3:29402304-29402323 | Msa0637550:intron | 20.0% |
| !! | GACAATGCATAAAATATATA+AGG | + | chr4_3:29402349-29402368 | None:intergenic | 20.0% |
| !!! | ATATACTTTGATTTTTTCAC+TGG | + | chr4_3:29402843-29402862 | None:intergenic | 20.0% |
| !! | TCAATACTTAGAATTTACTT+AGG | - | chr4_3:29402879-29402898 | Msa0637550:intron | 20.0% |
| !! | AAAAAACCTCAAAATTGAAT+AGG | - | chr4_3:29403122-29403141 | Msa0637550:intron | 20.0% |
| !! | AAAAACCTCAAAATTGAATA+GGG | - | chr4_3:29403123-29403142 | Msa0637550:intron | 20.0% |
| !!! | TTTAATTTATGCGAAATAGA+AGG | - | chr4_3:29403213-29403232 | Msa0637550:intron | 20.0% |
| !!! | AATGTATATATGTTTTTTGC+AGG | - | chr4_3:29403300-29403319 | Msa0637550:CDS | 20.0% |
| !!! | TCTTTTTGGTATTAGATAGA+AGG | + | chr4_3:29400092-29400111 | None:intergenic | 25.0% |
| !! | TTTTAATGAAAAAGGGATGT+TGG | + | chr4_3:29400211-29400230 | None:intergenic | 25.0% |
| !!! | GGAAGTGTTTTTAATGAAAA+AGG | + | chr4_3:29400219-29400238 | None:intergenic | 25.0% |
| ! | CAACCACAATAAAACATATA+TGG | - | chr4_3:29400358-29400377 | Msa0637550:CDS | 25.0% |
| !!! | ATGCCATATATGTTTTATTG+TGG | + | chr4_3:29400364-29400383 | None:intergenic | 25.0% |
| ! | GAATATATACCATATTGAGA+AGG | - | chr4_3:29400748-29400767 | Msa0637550:intron | 25.0% |
| ! | TTGATTGATTGGTAAGTTAA+GGG | + | chr4_3:29400894-29400913 | None:intergenic | 25.0% |
| ! | TGACCTACTTCAAAAATTAT+AGG | - | chr4_3:29401004-29401023 | Msa0637550:intron | 25.0% |
| !! | GATTAGTTATTATCCATCAT+AGG | - | chr4_3:29401032-29401051 | Msa0637550:intron | 25.0% |
| ! | TTTGTAAAATGAGGATTCAT+TGG | - | chr4_3:29401204-29401223 | Msa0637550:CDS | 25.0% |
| ! | AACAAGGTCAAATGAATTAT+TGG | + | chr4_3:29401381-29401400 | None:intergenic | 25.0% |
| ! | CTCATTTACAACCAATAATT+AGG | + | chr4_3:29401421-29401440 | None:intergenic | 25.0% |
| !!! | TCTTTTGACTAAATAAAAGG+TGG | - | chr4_3:29401475-29401494 | Msa0637550:intron | 25.0% |
| !!! | AAAATTGTATTGATTGCAAC+AGG | - | chr4_3:29401893-29401912 | Msa0637550:CDS | 25.0% |
| ! | CTTCAGATATTAATTTCTCT+TGG | + | chr4_3:29401968-29401987 | None:intergenic | 25.0% |
| !! | TTGTTCAAAGTTGAAGTATT+TGG | + | chr4_3:29402138-29402157 | None:intergenic | 25.0% |
| ! | ATTGATATAGTAAATCAGGT+TGG | - | chr4_3:29402158-29402177 | Msa0637550:intron | 25.0% |
| ! | AAATCTTTAGATTGAGTTCT+TGG | + | chr4_3:29402187-29402206 | None:intergenic | 25.0% |
| ! | TGCATAAAATATATAAGGTC+CGG | + | chr4_3:29402344-29402363 | None:intergenic | 25.0% |
| !!! | AAACTGTGTATTTTGCTTTT+TGG | + | chr4_3:29402759-29402778 | None:intergenic | 25.0% |
| !!! | ATTTTTTCACTGGATAGATA+AGG | + | chr4_3:29402833-29402852 | None:intergenic | 25.0% |
| !!! | AGTAAATTCTAAGTATTGAG+TGG | + | chr4_3:29402878-29402897 | None:intergenic | 25.0% |
| !! | ATGACATGTGTGAAATTTTT+AGG | - | chr4_3:29402966-29402985 | Msa0637550:intron | 25.0% |
| !!! | GTTTTGGTTTTAAAAATGTG+AGG | + | chr4_3:29403011-29403030 | None:intergenic | 25.0% |
| !! | GTGAAAAATACAAATGGTTT+TGG | + | chr4_3:29403027-29403046 | None:intergenic | 25.0% |
| !! | AAAAAAACCAACATTGACTA+GGG | + | chr4_3:29403049-29403068 | None:intergenic | 25.0% |
| !! | TAAAAAAACCAACATTGACT+AGG | + | chr4_3:29403050-29403069 | None:intergenic | 25.0% |
| !!! | TATATATGTTTTTTGCAGGT+GGG | - | chr4_3:29403304-29403323 | Msa0637550:CDS | 25.0% |
| ! | AAGTAGAAAATATCTTCATC+TGG | + | chr4_3:29403353-29403372 | None:intergenic | 25.0% |
| !! | TGAAGATATTTTCTACTTAG+TGG | - | chr4_3:29403355-29403374 | Msa0637550:CDS | 25.0% |
| !! | GTATGTCTTTCAAGTAAATT+AGG | - | chr4_3:29403808-29403827 | Msa0637550:CDS | 25.0% |
| CAAAACATTGTATTCCTCAA+AGG | - | chr4_3:29400132-29400151 | Msa0637550:three_prime_UTR | 30.0% | |
| ACAAGATAATGAATCCTTTG+AGG | + | chr4_3:29400149-29400168 | None:intergenic | 30.0% | |
| AAGACAAAAGTTAAACCTTG+TGG | + | chr4_3:29400187-29400206 | None:intergenic | 30.0% | |
| TTAAAAACACTTCCACTAGA+AGG | - | chr4_3:29400225-29400244 | Msa0637550:three_prime_UTR | 30.0% | |
| ! | AATCTCTTGATGCTTTGTTA+AGG | + | chr4_3:29400275-29400294 | None:intergenic | 30.0% |
| !! | AACAAAGCATCAAGAGATTT+TGG | - | chr4_3:29400276-29400295 | Msa0637550:three_prime_UTR | 30.0% |
| TAGATACCAATATCATCCTA+TGG | - | chr4_3:29400302-29400321 | Msa0637550:three_prime_UTR | 30.0% | |
| !! | GCAATATCAGAAACTGATTT+TGG | + | chr4_3:29400339-29400358 | None:intergenic | 30.0% |
| !! | TTGCATGAGACTTTAAGATA+TGG | - | chr4_3:29400570-29400589 | Msa0637550:CDS | 30.0% |
| !! | TGCATGAGACTTTAAGATAT+GGG | - | chr4_3:29400571-29400590 | Msa0637550:CDS | 30.0% |
| AAATAATCTGTCCATGATCT+TGG | + | chr4_3:29400603-29400622 | None:intergenic | 30.0% | |
| GATTATTTGCATCTAACAGT+TGG | - | chr4_3:29400615-29400634 | Msa0637550:CDS | 30.0% | |
| ! | TTTCTTTTCCCTTCTCAATA+TGG | + | chr4_3:29400760-29400779 | None:intergenic | 30.0% |
| CTTGATTGATTGGTAAGTTA+AGG | + | chr4_3:29400895-29400914 | None:intergenic | 30.0% | |
| ACACAAACAACTTGATTGAT+TGG | + | chr4_3:29400905-29400924 | None:intergenic | 30.0% | |
| TTTGTTTGTAGGGATTGAAA+TGG | - | chr4_3:29400939-29400958 | Msa0637550:intron | 30.0% | |
| TCGGCCTTTATAACTTTATA+AGG | - | chr4_3:29400973-29400992 | Msa0637550:intron | 30.0% | |
| !!! | AGGCCTATAATTTTTGAAGT+AGG | + | chr4_3:29401010-29401029 | None:intergenic | 30.0% |
| GATGGATAATAACTAATCTG+AGG | + | chr4_3:29401030-29401049 | None:intergenic | 30.0% | |
| ATCCATCAATATTACAAGAG+CGG | + | chr4_3:29401083-29401102 | None:intergenic | 30.0% | |
| CACTTATTATAAGACACAGA+TGG | - | chr4_3:29401168-29401187 | Msa0637550:CDS | 30.0% | |
| !!! | ATTCACACATGTTAGTTTTC+AGG | - | chr4_3:29401273-29401292 | Msa0637550:CDS | 30.0% |
| GAAAACGTGTACCTAATTAT+TGG | - | chr4_3:29401407-29401426 | Msa0637550:intron | 30.0% | |
| ! | TTTTGTAAGCACCATGATAA+AGG | - | chr4_3:29401680-29401699 | Msa0637550:intron | 30.0% |
| TTTGTAAGCACCATGATAAA+GGG | - | chr4_3:29401681-29401700 | Msa0637550:intron | 30.0% | |
| CGTACAATACACCAAATTAT+AGG | + | chr4_3:29401756-29401775 | None:intergenic | 30.0% | |
| !!! | TAAAGTTGTTGTCATTTTCC+AGG | + | chr4_3:29401826-29401845 | None:intergenic | 30.0% |
| !! | ATATCACTTGGTGTTTAGAA+GGG | + | chr4_3:29401867-29401886 | None:intergenic | 30.0% |
| ATTGATTGCAACAGGTAAAA+TGG | - | chr4_3:29401901-29401920 | Msa0637550:CDS | 30.0% | |
| TATTAATTTCTCTTGGTCTC+TGG | + | chr4_3:29401961-29401980 | None:intergenic | 30.0% | |
| ! | TGAAGTATTTGGCTAATTCT+AGG | + | chr4_3:29402127-29402146 | None:intergenic | 30.0% |
| GCATAAAATATATAAGGTCC+GGG | + | chr4_3:29402343-29402362 | None:intergenic | 30.0% | |
| ! | CTGTTTGAAAAAGAGTTGAT+CGG | + | chr4_3:29402632-29402651 | None:intergenic | 30.0% |
| ACTAGGGTGAAAAATACAAA+TGG | + | chr4_3:29403033-29403052 | None:intergenic | 30.0% | |
| ! | TTTCACCCTATTCAATTTTG+AGG | + | chr4_3:29403131-29403150 | None:intergenic | 30.0% |
| !!! | AGCTCAGTTTTAAAAATGAG+CGG | - | chr4_3:29403182-29403201 | Msa0637550:intron | 30.0% |
| !!! | GTATATATGTTTTTTGCAGG+TGG | - | chr4_3:29403303-29403322 | Msa0637550:CDS | 30.0% |
| TACTGTCAAAGAGAAAATCT+TGG | - | chr4_3:29403461-29403480 | Msa0637550:CDS | 30.0% | |
| !!! | TTTTGAAATATTCTTTGGCC+AGG | + | chr4_3:29403605-29403624 | None:intergenic | 30.0% |
| GCTTAGACATGTTTGAATAT+AGG | - | chr4_3:29403713-29403732 | Msa0637550:CDS | 30.0% | |
| ! | TGATAGTGCACAGAAAAAAA+TGG | - | chr4_3:29403747-29403766 | Msa0637550:CDS | 30.0% |
| !! | TTAGGAATGTTGACTTTGTA+CGG | - | chr4_3:29403826-29403845 | Msa0637550:CDS | 30.0% |
| TTCTTAGTTGTATAGCCACA+AGG | - | chr4_3:29400169-29400188 | Msa0637550:three_prime_UTR | 35.0% | |
| AAACTCAAATGTCCTTCTAG+TGG | + | chr4_3:29400240-29400259 | None:intergenic | 35.0% | |
| TGGAGGAATTGTGATCAAAA+TGG | - | chr4_3:29400458-29400477 | Msa0637550:CDS | 35.0% | |
| !! | TGAGACTTTAAGATATGGGT+TGG | - | chr4_3:29400575-29400594 | Msa0637550:CDS | 35.0% |
| TATTTGCATCTAACAGTTGG+TGG | - | chr4_3:29400618-29400637 | Msa0637550:CDS | 35.0% | |
| !! | TCACCAATCGATTTGTTTGT+AGG | - | chr4_3:29400928-29400947 | Msa0637550:intron | 35.0% |
| !! | CACCAATCGATTTGTTTGTA+GGG | - | chr4_3:29400929-29400948 | Msa0637550:intron | 35.0% |
| ATCCCTACAAACAAATCGAT+TGG | + | chr4_3:29400934-29400953 | None:intergenic | 35.0% | |
| !! | ACTTTGAAATGAGCCTATGA+TGG | + | chr4_3:29401048-29401067 | None:intergenic | 35.0% |
| ATATTACAAGAGCGGGTAAT+AGG | + | chr4_3:29401075-29401094 | None:intergenic | 35.0% | |
| TCCATCAATATTACAAGAGC+GGG | + | chr4_3:29401082-29401101 | None:intergenic | 35.0% | |
| !!! | ACACATTTTTTGCGTCAACA+AGG | + | chr4_3:29401231-29401250 | None:intergenic | 35.0% |
| ! | ACACGTTTTCTATGTCAACA+AGG | + | chr4_3:29401397-29401416 | None:intergenic | 35.0% |
| AATGAATGAATGCAGGAACA+GGG | - | chr4_3:29401500-29401519 | Msa0637550:intron | 35.0% | |
| TTAGTGATTAGTACCATGGA+AGG | + | chr4_3:29401637-29401656 | None:intergenic | 35.0% | |
| CTCATTAGTGATTAGTACCA+TGG | + | chr4_3:29401641-29401660 | None:intergenic | 35.0% | |
| TTGTAAGCACCATGATAAAG+GGG | - | chr4_3:29401682-29401701 | Msa0637550:intron | 35.0% | |
| !! | ATGCAGAAGTTTTAGTGCTA+GGG | + | chr4_3:29401712-29401731 | None:intergenic | 35.0% |
| !! | TATGCAGAAGTTTTAGTGCT+AGG | + | chr4_3:29401713-29401732 | None:intergenic | 35.0% |
| !! | GATATCACTTGGTGTTTAGA+AGG | + | chr4_3:29401868-29401887 | None:intergenic | 35.0% |
| ! | TGCAACAGGTAAAATGGATT+CGG | - | chr4_3:29401907-29401926 | Msa0637550:CDS | 35.0% |
| AATGCATTTGACTACATCGA+AGG | - | chr4_3:29401990-29402009 | Msa0637550:CDS | 35.0% | |
| ! | TCTGAGACTGATAGAGTAAT+AGG | - | chr4_3:29402463-29402482 | Msa0637550:intron | 35.0% |
| CTGAGACTGATAGAGTAATA+GGG | - | chr4_3:29402464-29402483 | Msa0637550:intron | 35.0% | |
| CTGATAGAGTAATAGGGTAT+CGG | - | chr4_3:29402470-29402489 | Msa0637550:intron | 35.0% | |
| AGGTCAAATTGCGTTCAAAA+GGG | - | chr4_3:29402694-29402713 | Msa0637550:intron | 35.0% | |
| GGTATAAAAAGATTGAGCCA+TGG | + | chr4_3:29402738-29402757 | None:intergenic | 35.0% | |
| !! | AGTTTTGCTCAAGTTGTCTT+TGG | - | chr4_3:29402774-29402793 | Msa0637550:intron | 35.0% |
| !! | GTTTTGCTCAAGTTGTCTTT+GGG | - | chr4_3:29402775-29402794 | Msa0637550:intron | 35.0% |
| ATCCTTACACAAACAAGCAA+TGG | - | chr4_3:29402801-29402820 | Msa0637550:intron | 35.0% | |
| ! | TTTTTCACCCTAGTCAATGT+TGG | - | chr4_3:29403039-29403058 | Msa0637550:intron | 35.0% |
| ! | GCATCTGCATTTGGTAATTT+AGG | + | chr4_3:29403875-29403894 | None:intergenic | 35.0% |
| TCACTGCCATAGGATGATAT+TGG | + | chr4_3:29400311-29400330 | None:intergenic | 40.0% | |
| CAAGGACAATCACAAACTCA+TGG | - | chr4_3:29400438-29400457 | Msa0637550:CDS | 40.0% | |
| CCAACATGGATTTGCATTTC+AGG | + | chr4_3:29400498-29400517 | None:intergenic | 40.0% | |
| CCTGAAATGCAAATCCATGT+TGG | - | chr4_3:29400495-29400514 | Msa0637550:CDS | 40.0% | |
| AAGGAGAAGAATTGCCAACA+TGG | + | chr4_3:29400512-29400531 | None:intergenic | 40.0% | |
| TGGCAATTCTTCTCCTTATG+TGG | - | chr4_3:29400515-29400534 | Msa0637550:CDS | 40.0% | |
| AGTGGACAAGCATTTAAGCA+CGG | - | chr4_3:29400663-29400682 | Msa0637550:intron | 40.0% | |
| TGCTGAACATTACTGATCTG+AGG | + | chr4_3:29400690-29400709 | None:intergenic | 40.0% | |
| ! | TGTAGGGATTGAAATGGACT+AGG | - | chr4_3:29400945-29400964 | Msa0637550:intron | 40.0% |
| TAAAGTTATAAAGGCCGACC+TGG | + | chr4_3:29400971-29400990 | None:intergenic | 40.0% | |
| ACCCGCTCTTGTAATATTGA+TGG | - | chr4_3:29401078-29401097 | Msa0637550:intron | 40.0% | |
| CAATGAATGAATGCAGGAAC+AGG | - | chr4_3:29401499-29401518 | Msa0637550:intron | 40.0% | |
| ATGAATGAATGCAGGAACAG+GGG | - | chr4_3:29401501-29401520 | Msa0637550:intron | 40.0% | |
| CACGAGTTATAATGCCAAAC+TGG | + | chr4_3:29401591-29401610 | None:intergenic | 40.0% | |
| TTACACAAGAGACTGTTTCC+AGG | - | chr4_3:29401793-29401812 | Msa0637550:intron | 40.0% | |
| GGTGTTTAGAAGGGTAACTT+TGG | + | chr4_3:29401858-29401877 | None:intergenic | 40.0% | |
| ! | GCAACAGGTAAAATGGATTC+GGG | - | chr4_3:29401908-29401927 | Msa0637550:CDS | 40.0% |
| ! | GAACTGGTCTGCTAAATAAC+TGG | - | chr4_3:29402030-29402049 | Msa0637550:CDS | 40.0% |
| !! | TTGAAATGACTAGCTTGGAC+TGG | + | chr4_3:29402080-29402099 | None:intergenic | 40.0% |
| ! | CTGACTTGAAATGACTAGCT+TGG | + | chr4_3:29402085-29402104 | None:intergenic | 40.0% |
| ! | GCTAGTCATTTCAAGTCAGA+TGG | - | chr4_3:29402086-29402105 | Msa0637550:intron | 40.0% |
| !!! | TTATTTTTTTGTGGTGGCCG+AGG | - | chr4_3:29402310-29402329 | Msa0637550:intron | 40.0% |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | + | chr4_3:29402371-29402390 | None:intergenic | 40.0% |
| AGACTCTACACTTGTCTACA+TGG | - | chr4_3:29402537-29402556 | Msa0637550:intron | 40.0% | |
| GAGGTCAAATTGCGTTCAAA+AGG | - | chr4_3:29402693-29402712 | Msa0637550:intron | 40.0% | |
| AATTGCGTTCAAAAGGGTTG+TGG | - | chr4_3:29402700-29402719 | Msa0637550:intron | 40.0% | |
| ATTGCGTTCAAAAGGGTTGT+GGG | - | chr4_3:29402701-29402720 | Msa0637550:intron | 40.0% | |
| AAAAGATTGAGCCATGGATG+TGG | + | chr4_3:29402732-29402751 | None:intergenic | 40.0% | |
| TCACTGGATAGATAAGGACA+GGG | + | chr4_3:29402827-29402846 | None:intergenic | 40.0% | |
| TTCACTGGATAGATAAGGAC+AGG | + | chr4_3:29402828-29402847 | None:intergenic | 40.0% | |
| ATTTGAAGAAGGAACTGCAG+AGG | + | chr4_3:29403390-29403409 | None:intergenic | 40.0% | |
| TCTGCAGTTCCTTCTTCAAA+TGG | - | chr4_3:29403389-29403408 | Msa0637550:CDS | 40.0% | |
| CCATCAGTTCCATTTGAAGA+AGG | + | chr4_3:29403401-29403420 | None:intergenic | 40.0% | |
| CCTTCTTCAAATGGAACTGA+TGG | - | chr4_3:29403398-29403417 | Msa0637550:CDS | 40.0% | |
| TTCCTCTTGTGTATTGTGGT+GGG | + | chr4_3:29403504-29403523 | None:intergenic | 40.0% | |
| ATTCCTCTTGTGTATTGTGG+TGG | + | chr4_3:29403505-29403524 | None:intergenic | 40.0% | |
| ACCACAATACACAAGAGGAA+TGG | - | chr4_3:29403504-29403523 | Msa0637550:CDS | 40.0% | |
| TCCATTCCTCTTGTGTATTG+TGG | + | chr4_3:29403508-29403527 | None:intergenic | 40.0% | |
| ACAATACACAAGAGGAATGG+AGG | - | chr4_3:29403507-29403526 | Msa0637550:CDS | 40.0% | |
| CAATACACAAGAGGAATGGA+GGG | - | chr4_3:29403508-29403527 | Msa0637550:CDS | 40.0% | |
| !! | GGTCCATTTTGGTACTAAGT+GGG | - | chr4_3:29403529-29403548 | Msa0637550:CDS | 40.0% |
| TCTCCCACTTAGTACCAAAA+TGG | + | chr4_3:29403535-29403554 | None:intergenic | 40.0% | |
| ! | CAGGAGCAAGTATTGCAAAT+GGG | + | chr4_3:29403586-29403605 | None:intergenic | 40.0% |
| ! | TGATGCTGTCTAAAGTCATG+AGG | + | chr4_3:29403639-29403658 | None:intergenic | 40.0% |
| CTGTGCACTATCAATTTGTG+TGG | + | chr4_3:29403740-29403759 | None:intergenic | 40.0% | |
| TTTGGATGCATCACTGCCAT+AGG | + | chr4_3:29400321-29400340 | None:intergenic | 45.0% | |
| GGACATGGACATTCACTTCA+AGG | - | chr4_3:29400420-29400439 | Msa0637550:CDS | 45.0% | |
| GGACAATCACAAACTCATGG+AGG | - | chr4_3:29400441-29400460 | Msa0637550:CDS | 45.0% | |
| TCTCCTTATGTGGATGTCTC+TGG | - | chr4_3:29400525-29400544 | Msa0637550:CDS | 45.0% | |
| ! | ATGTCTCTGGTGGTGAATTG+TGG | - | chr4_3:29400538-29400557 | Msa0637550:CDS | 45.0% |
| TTGTCCACTTACACCAGCAT+TGG | + | chr4_3:29400652-29400671 | None:intergenic | 45.0% | |
| CAGCAGCTTGAGATTGTTAC+AGG | - | chr4_3:29400705-29400724 | Msa0637550:intron | 45.0% | |
| TACAAGAGCGGGTAATAGGT+TGG | + | chr4_3:29401071-29401090 | None:intergenic | 45.0% | |
| GGTGGTCAATGAATGAATGC+AGG | - | chr4_3:29401493-29401512 | Msa0637550:intron | 45.0% | |
| ! | ATTAGTACCATGGAAGGTGC+TGG | + | chr4_3:29401631-29401650 | None:intergenic | 45.0% |
| TAGGGTTGTCCCCTTTATCA+TGG | + | chr4_3:29401694-29401713 | None:intergenic | 45.0% | |
| ACTTCTGCATACGCAGAGTT+TGG | - | chr4_3:29401722-29401741 | Msa0637550:intron | 45.0% | |
| CTTCTGCATACGCAGAGTTT+GGG | - | chr4_3:29401723-29401742 | Msa0637550:intron | 45.0% | |
| TGGGAAGGGGTCCTATAATT+TGG | - | chr4_3:29401742-29401761 | Msa0637550:intron | 45.0% | |
| ! | CATTTTCCAGGTTCAAGTCC+TGG | + | chr4_3:29401814-29401833 | None:intergenic | 45.0% |
| ! | TAGCTTGGACTGGATCTTGT+GGG | + | chr4_3:29402070-29402089 | None:intergenic | 45.0% |
| AGACAGAGTGCATGTATCTG+AGG | - | chr4_3:29402674-29402693 | Msa0637550:intron | 45.0% | |
| GGCCATTGCTTGTTTGTGTA+AGG | + | chr4_3:29402806-29402825 | None:intergenic | 45.0% | |
| TCCTCTTGTGTATTGTGGTG+GGG | + | chr4_3:29403503-29403522 | None:intergenic | 45.0% | |
| !! | GGGTCCATTTTGGTACTAAG+TGG | - | chr4_3:29403528-29403547 | Msa0637550:CDS | 45.0% |
| ! | CCAGGAGCAAGTATTGCAAA+TGG | + | chr4_3:29403587-29403606 | None:intergenic | 45.0% |
| CCATTTGCAATACTTGCTCC+TGG | - | chr4_3:29403584-29403603 | Msa0637550:CDS | 45.0% | |
| ! | TGCTGTCTAAAGTCATGAGG+TGG | + | chr4_3:29403636-29403655 | None:intergenic | 45.0% |
| !!! | TAATAATAATAATACTTTTT+TGG | - | chr4_3:29401121-29401140 | Msa0637550:CDS | 5.0% |
| !!! | AATAATAATAATACTTTTTT+GGG | - | chr4_3:29401122-29401141 | Msa0637550:CDS | 5.0% |
| CATCTCACTGTTGCAGCAAG+AGG | - | chr4_3:29400399-29400418 | Msa0637550:CDS | 50.0% | |
| ACTGTTGCAGCAAGAGGACA+TGG | - | chr4_3:29400405-29400424 | Msa0637550:CDS | 50.0% | |
| CCACCAGAGACATCCACATA+AGG | + | chr4_3:29400531-29400550 | None:intergenic | 50.0% | |
| CCTTATGTGGATGTCTCTGG+TGG | - | chr4_3:29400528-29400547 | Msa0637550:CDS | 50.0% | |
| !! | ATGGGTTGGCACCAAGATCA+TGG | - | chr4_3:29400589-29400608 | Msa0637550:CDS | 50.0% |
| CTCTCCAATGCTGGTGTAAG+TGG | - | chr4_3:29400645-29400664 | Msa0637550:intron | 50.0% | |
| !! | GGATTGAAATGGACTAGGCC+AGG | - | chr4_3:29400950-29400969 | Msa0637550:intron | 50.0% |
| !! | TGAAATGGACTAGGCCAGGT+CGG | - | chr4_3:29400954-29400973 | Msa0637550:intron | 50.0% |
| AATGAATGCAGGAACAGGGG+AGG | - | chr4_3:29401504-29401523 | Msa0637550:intron | 50.0% | |
| GAGCTCTTCCACAGTGTTCT+TGG | - | chr4_3:29401556-29401575 | Msa0637550:intron | 50.0% | |
| CTCTTCCACAGTGTTCTTGG+AGG | - | chr4_3:29401559-29401578 | Msa0637550:intron | 50.0% | |
| CAAGTCCTCCAAGAACACTG+TGG | + | chr4_3:29401567-29401586 | None:intergenic | 50.0% | |
| CACAGTGTTCTTGGAGGACT+TGG | - | chr4_3:29401565-29401584 | Msa0637550:intron | 50.0% | |
| TGCATACGCAGAGTTTGGGA+AGG | - | chr4_3:29401727-29401746 | Msa0637550:intron | 50.0% | |
| GCATACGCAGAGTTTGGGAA+GGG | - | chr4_3:29401728-29401747 | Msa0637550:intron | 50.0% | |
| CATACGCAGAGTTTGGGAAG+GGG | - | chr4_3:29401729-29401748 | Msa0637550:intron | 50.0% | |
| CTGTTTCCAGGACTTGAACC+TGG | - | chr4_3:29401805-29401824 | Msa0637550:CDS | 50.0% | |
| ! | GACTGGATCTTGTGGGTTGA+AGG | + | chr4_3:29402063-29402082 | None:intergenic | 50.0% |
| ! | CTAGCTTGGACTGGATCTTG+TGG | + | chr4_3:29402071-29402090 | None:intergenic | 50.0% |
| AAGGTCCGGGATTCAAACCT+CGG | + | chr4_3:29402330-29402349 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | + | chr4_3:29402376-29402395 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | - | chr4_3:29402373-29402392 | Msa0637550:CDS | 50.0% | |
| TGTGGGATGTTCCACATCCA+TGG | - | chr4_3:29402718-29402737 | Msa0637550:intron | 50.0% | |
| ! | GAGGAATGGAGGGTCCATTT+TGG | - | chr4_3:29403518-29403537 | Msa0637550:CDS | 50.0% |
| CTTGGAGGACTTGGCCAGTT+TGG | - | chr4_3:29401574-29401593 | Msa0637550:intron | 55.0% | |
| TCTTGCACCAGCACCTTCCA+TGG | - | chr4_3:29401621-29401640 | Msa0637550:intron | 55.0% | |
| GCCCCACCACAATACACAAG+AGG | - | chr4_3:29403499-29403518 | Msa0637550:CDS | 55.0% | |
| GGTGGCACTCTCTCCAATGC+TGG | - | chr4_3:29400636-29400655 | Msa0637550:intron | 60.0% | |
| GGTGGCCGAGGTTTGAATCC+CGG | - | chr4_3:29402322-29402341 | Msa0637550:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 29400075 | 29403901 | 29400075 | ID=Msa0637550;Name=Msa0637550 |
| chr4_3 | mRNA | 29400075 | 29403901 | 29400075 | ID=Msa0637550-mRNA-1;Parent=Msa0637550;Name=Msa0637550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=39|1|1|1|1|1|5|258|528 |
| chr4_3 | exon | 29400075 | 29400654 | 29400075 | ID=Msa0637550-mRNA-1:exon:7198;Parent=Msa0637550-mRNA-1 |
| chr4_3 | exon | 29401120 | 29401382 | 29401120 | ID=Msa0637550-mRNA-1:exon:7197;Parent=Msa0637550-mRNA-1 |
| chr4_3 | exon | 29401801 | 29402061 | 29401801 | ID=Msa0637550-mRNA-1:exon:7196;Parent=Msa0637550-mRNA-1 |
| chr4_3 | exon | 29402334 | 29402461 | 29402334 | ID=Msa0637550-mRNA-1:exon:7195;Parent=Msa0637550-mRNA-1 |
| chr4_3 | exon | 29403250 | 29403901 | 29403250 | ID=Msa0637550-mRNA-1:exon:7194;Parent=Msa0637550-mRNA-1 |
| chr4_3 | five_prime_UTR | 29403863 | 29403901 | 29403863 | ID=Msa0637550-mRNA-1:five_prime_utr;Parent=Msa0637550-mRNA-1 |
| chr4_3 | CDS | 29403250 | 29403862 | 29403250 | ID=Msa0637550-mRNA-1:cds;Parent=Msa0637550-mRNA-1 |
| chr4_3 | CDS | 29402334 | 29402461 | 29402334 | ID=Msa0637550-mRNA-1:cds;Parent=Msa0637550-mRNA-1 |
| chr4_3 | CDS | 29401801 | 29402061 | 29401801 | ID=Msa0637550-mRNA-1:cds;Parent=Msa0637550-mRNA-1 |
| chr4_3 | CDS | 29401120 | 29401382 | 29401120 | ID=Msa0637550-mRNA-1:cds;Parent=Msa0637550-mRNA-1 |
| chr4_3 | CDS | 29400333 | 29400654 | 29400333 | ID=Msa0637550-mRNA-1:cds;Parent=Msa0637550-mRNA-1 |
| chr4_3 | three_prime_UTR | 29400075 | 29400332 | 29400075 | ID=Msa0637550-mRNA-1:three_prime_utr;Parent=Msa0637550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
