Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598050 | AET05442.1 | 98.438 | 64 | 1 | 0 | 3 | 66 | 446 | 509 | 1.99e-33 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598050 | sp|Q8LF21|DRP1C_ARATH | 72.464 | 69 | 16 | 1 | 3 | 71 | 447 | 512 | 7.43e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598050 | G7LBF5 | 98.438 | 64 | 1 | 0 | 3 | 66 | 446 | 509 | 9.50e-34 | 133 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375630 | Msa0598050 | 0.819329 | 1.229544e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598050 | MtrunA17_Chr8g0391891 | 98.438 | 64 | 1 | 0 | 3 | 66 | 446 | 509 | 2.53e-37 | 133 |
| Msa0598050 | MtrunA17_Chr1g0161411 | 74.138 | 58 | 15 | 0 | 1 | 58 | 1 | 58 | 3.52e-25 | 94.0 |
| Msa0598050 | MtrunA17_Chr4g0055051 | 42.000 | 100 | 54 | 2 | 3 | 99 | 446 | 544 | 1.09e-14 | 69.3 |
| Msa0598050 | MtrunA17_Chr8g0337041 | 61.538 | 65 | 23 | 1 | 3 | 65 | 452 | 516 | 1.20e-13 | 66.2 |
| Msa0598050 | MtrunA17_Chr8g0346971 | 47.458 | 59 | 31 | 0 | 3 | 61 | 454 | 512 | 5.18e-12 | 61.6 |
| Msa0598050 | MtrunA17_Chr7g0233071 | 46.392 | 97 | 46 | 2 | 2 | 92 | 451 | 547 | 5.23e-12 | 61.6 |
| Msa0598050 | MtrunA17_Chr8g0388271 | 44.068 | 59 | 33 | 0 | 3 | 61 | 446 | 504 | 9.06e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598050 | AT1G14830.1 | 72.464 | 69 | 16 | 1 | 3 | 71 | 447 | 512 | 7.55e-26 | 101 |
| Msa0598050 | AT2G44590.3 | 52.857 | 70 | 33 | 0 | 3 | 72 | 447 | 516 | 6.24e-18 | 79.0 |
| Msa0598050 | AT2G44590.2 | 52.857 | 70 | 33 | 0 | 3 | 72 | 430 | 499 | 6.58e-18 | 79.0 |
| Msa0598050 | AT2G44590.1 | 52.857 | 70 | 33 | 0 | 3 | 72 | 430 | 499 | 6.65e-18 | 79.0 |
| Msa0598050 | AT3G60190.1 | 57.143 | 70 | 24 | 1 | 3 | 66 | 452 | 521 | 1.83e-17 | 77.8 |
| Msa0598050 | AT3G61760.2 | 50.000 | 60 | 30 | 0 | 2 | 61 | 445 | 504 | 1.84e-13 | 66.2 |
| Msa0598050 | AT3G61760.1 | 50.000 | 60 | 30 | 0 | 2 | 61 | 445 | 504 | 1.91e-13 | 66.2 |
| Msa0598050 | AT5G42080.4 | 49.153 | 59 | 30 | 0 | 3 | 61 | 446 | 504 | 8.01e-12 | 61.6 |
| Msa0598050 | AT5G42080.1 | 49.153 | 59 | 30 | 0 | 3 | 61 | 446 | 504 | 8.01e-12 | 61.6 |
| Msa0598050 | AT5G42080.3 | 49.153 | 59 | 30 | 0 | 3 | 61 | 440 | 498 | 8.16e-12 | 61.6 |
Find 31 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGTACCAATCTTGAATT+TGG | 0.181956 | 4_2:-31937121 | None:intergenic |
| CTTGAATTTGGTGGTCCATT+TGG | 0.219063 | 4_2:-31937109 | None:intergenic |
| GTAACAACAATTTAGAGATT+TGG | 0.250966 | 4_2:+31939298 | Msa0598050:three_prime_UTR |
| TTGAATTTGGTGGTCCATTT+GGG | 0.310768 | 4_2:-31937108 | None:intergenic |
| AGTTACGCGGCTGGTTGATA+TGG | 0.336032 | 4_2:+31937027 | Msa0598050:CDS |
| ATCTAACAGCAGAATTCTTT+AGG | 0.338181 | 4_2:+31937059 | Msa0598050:CDS |
| TTACATGTGTAGCATGGATT+TGG | 0.352298 | 4_2:-31938992 | None:intergenic |
| AGAACAATGTCTCGGTTACT+TGG | 0.381078 | 4_2:+31938928 | Msa0598050:intron |
| TGAGCTAATTGACAAAGCTT+CGG | 0.439718 | 4_2:-31939224 | None:intergenic |
| CTGTCTTCTTGCGTTCGTCT+CGG | 0.473641 | 4_2:-31937006 | None:intergenic |
| CATGTGTAGCATGGATTTGG+AGG | 0.478516 | 4_2:-31938989 | None:intergenic |
| GAACAATGTCTCGGTTACTT+GGG | 0.488864 | 4_2:+31938929 | Msa0598050:intron |
| TGGACCACCAAATTCAAGAT+TGG | 0.502479 | 4_2:+31937114 | Msa0598050:CDS |
| GAACCAGAAAAGAACCCAAA+TGG | 0.505929 | 4_2:+31937094 | Msa0598050:CDS |
| CGTACCAATCTTGAATTTGG+TGG | 0.512761 | 4_2:-31937118 | None:intergenic |
| GAGAATGATAATGAAAATGA+AGG | 0.527306 | 4_2:+31939267 | Msa0598050:exon |
| CAAGAAGACAGTTACGCGGC+TGG | 0.536656 | 4_2:+31937018 | Msa0598050:CDS |
| AACAATGTCTCGGTTACTTG+GGG | 0.543250 | 4_2:+31938930 | Msa0598050:CDS |
| GATTGAGAAAACAGAACGTA+AGG | 0.544237 | 4_2:+31938956 | Msa0598050:CDS |
| ATGATAATGAAAATGAAGGA+GGG | 0.548480 | 4_2:+31939271 | Msa0598050:exon |
| AATGATAATGAAAATGAAGG+AGG | 0.555543 | 4_2:+31939270 | Msa0598050:exon |
| TGATAATGAAAATGAAGGAG+GGG | 0.560163 | 4_2:+31939272 | Msa0598050:exon |
| GCAATGTCATTTGAAAGCGT+TGG | 0.577613 | 4_2:-31936953 | None:intergenic |
| GAAAACTTACATGTGTAGCA+TGG | 0.581162 | 4_2:-31938998 | None:intergenic |
| ATCCAGTGCTTCATTTGCAG+CGG | 0.584720 | 4_2:-31936978 | None:intergenic |
| GTGTAGCATGGATTTGGAGG+CGG | 0.586253 | 4_2:-31938986 | None:intergenic |
| AACTTACTAGAACAATGTCT+CGG | 0.589455 | 4_2:+31938920 | Msa0598050:intron |
| AACCGCTGCAAATGAAGCAC+TGG | 0.596471 | 4_2:+31936976 | Msa0598050:CDS |
| CGTGTTTAGTTGCAGCAGCA+GGG | 0.602887 | 4_2:+31938241 | Msa0598050:intron |
| ACAATGTCTCGGTTACTTGG+GGG | 0.693242 | 4_2:+31938931 | Msa0598050:CDS |
| AACGCAAGAAGACAGTTACG+CGG | 0.760455 | 4_2:+31937014 | Msa0598050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTAAAATAGTATGT+TGG | + | chr4_2:31937568-31937587 | Msa0598050:intron | 10.0% |
| !! | TATTGAAAAAATAAATAACA+TGG | - | chr4_2:31938591-31938610 | None:intergenic | 10.0% |
| !!! | ATATTATTATTTTTAGGTAA+TGG | + | chr4_2:31939341-31939360 | Msa0598050:three_prime_UTR | 10.0% |
| !!! | TTATGAATCTTAATTTTACA+TGG | + | chr4_2:31937227-31937246 | Msa0598050:intron | 15.0% |
| !! | ATAAAAAACAGAGTTATATA+AGG | - | chr4_2:31937446-31937465 | None:intergenic | 15.0% |
| !!! | TTTTTTATAACTCAATGAAT+TGG | + | chr4_2:31937458-31937477 | Msa0598050:intron | 15.0% |
| !! | AAAATATATGTAGTTAATGA+CGG | + | chr4_2:31937957-31937976 | Msa0598050:intron | 15.0% |
| !! | ATATTATTTATAGACCTGAA+AGG | - | chr4_2:31936797-31936816 | None:intergenic | 20.0% |
| !! | TAAATCCTAAAGTAAATGTT+CGG | - | chr4_2:31936822-31936841 | None:intergenic | 20.0% |
| !!! | TGAATTGGTTTTATTTTTGA+TGG | + | chr4_2:31937473-31937492 | Msa0598050:intron | 20.0% |
| !!! | GAATTGGTTTTATTTTTGAT+GGG | + | chr4_2:31937474-31937493 | Msa0598050:intron | 20.0% |
| !!! | ATGGAATATTTAGTTTACAT+GGG | + | chr4_2:31938072-31938091 | Msa0598050:intron | 20.0% |
| !!! | TTTTGTTTTGTATGTTTTCT+TGG | + | chr4_2:31938286-31938305 | Msa0598050:intron | 20.0% |
| !!! | AATACATAAATCTTCAAGTT+GGG | - | chr4_2:31938349-31938368 | None:intergenic | 20.0% |
| !! | AAATACATAAATCTTCAAGT+TGG | - | chr4_2:31938350-31938369 | None:intergenic | 20.0% |
| !!! | GTGTTAATTGTTATTATCTA+AGG | - | chr4_2:31938446-31938465 | None:intergenic | 20.0% |
| !! | AAAGATAGAAAACTTCAATT+TGG | - | chr4_2:31938497-31938516 | None:intergenic | 20.0% |
| !! | GTTTATTGTTCTATACATAA+AGG | + | chr4_2:31939052-31939071 | Msa0598050:intron | 20.0% |
| !!! | CTGCAAAATTTAAAATATGT+GGG | - | chr4_2:31939168-31939187 | None:intergenic | 20.0% |
| !!! | ATGTGAATTACTGATTCTTT+TGG | + | chr4_2:31936842-31936861 | Msa0598050:intron | 25.0% |
| !!! | TGTGAATTACTGATTCTTTT+GGG | + | chr4_2:31936843-31936862 | Msa0598050:intron | 25.0% |
| ! | TTTACGTGTATTACTATTAC+AGG | + | chr4_2:31937176-31937195 | Msa0598050:intron | 25.0% |
| ! | TCTTTACATGAGCATTAAAA+TGG | - | chr4_2:31937322-31937341 | None:intergenic | 25.0% |
| ! | GCTACACAAAATATATGTAT+AGG | + | chr4_2:31937660-31937679 | Msa0598050:intron | 25.0% |
| ! | TTGAAAATGAAACCTATGTA+TGG | + | chr4_2:31937741-31937760 | Msa0598050:intron | 25.0% |
| ! | TGAAACCATTATCAAGTTTA+AGG | + | chr4_2:31937814-31937833 | Msa0598050:intron | 25.0% |
| !!! | GGATCTTACTTATTTGATTT+TGG | + | chr4_2:31937858-31937877 | Msa0598050:intron | 25.0% |
| ! | ATAGAAGAACATATATACAC+TGG | + | chr4_2:31937594-31937613 | Msa0598050:intron | 25.0% |
| !! | GATGGAATATTTAGTTTACA+TGG | + | chr4_2:31938071-31938090 | Msa0598050:intron | 25.0% |
| !!! | GTTGGTAATTTAAAGTAACT+AGG | - | chr4_2:31938205-31938224 | None:intergenic | 25.0% |
| ! | TTAGAGACAATTGTACTATA+TGG | - | chr4_2:31938538-31938557 | None:intergenic | 25.0% |
| !! | TAGTACAATTGTCTCTAAAA+AGG | + | chr4_2:31938540-31938559 | Msa0598050:intron | 25.0% |
| !! | TGATTTAGAACATGATTTGA+AGG | + | chr4_2:31938629-31938648 | Msa0598050:intron | 25.0% |
| !!! | TGTAGAATATTGTGTTTTGA+AGG | + | chr4_2:31938664-31938683 | Msa0598050:intron | 25.0% |
| ! | CAATATCAACTACTTGTTTA+AGG | + | chr4_2:31938740-31938759 | Msa0598050:intron | 25.0% |
| !! | CATTAGTTTATGTCTAAACA+AGG | + | chr4_2:31938791-31938810 | Msa0598050:intron | 25.0% |
| !!! | TTGAATATGACTTCAAGTTT+TGG | + | chr4_2:31938873-31938892 | Msa0598050:intron | 25.0% |
| !! | TGTTTTCAATAATTATGCCA+AGG | - | chr4_2:31939126-31939145 | None:intergenic | 25.0% |
| !! | CCTGCAAAATTTAAAATATG+TGG | - | chr4_2:31939169-31939188 | None:intergenic | 25.0% |
| !!! | CCACATATTTTAAATTTTGC+AGG | + | chr4_2:31939166-31939185 | Msa0598050:intron | 25.0% |
| !! | GAGAATGATAATGAAAATGA+AGG | + | chr4_2:31939267-31939286 | Msa0598050:exon | 25.0% |
| !! | AATGATAATGAAAATGAAGG+AGG | + | chr4_2:31939270-31939289 | Msa0598050:exon | 25.0% |
| !! | ATGATAATGAAAATGAAGGA+GGG | + | chr4_2:31939271-31939290 | Msa0598050:exon | 25.0% |
| ! | GTAACAACAATTTAGAGATT+TGG | + | chr4_2:31939298-31939317 | Msa0598050:three_prime_UTR | 25.0% |
| TATCTCCGAACATTTACTTT+AGG | + | chr4_2:31936814-31936833 | Msa0598050:intron | 30.0% | |
| !!! | GTGAATTACTGATTCTTTTG+GGG | + | chr4_2:31936844-31936863 | Msa0598050:intron | 30.0% |
| !! | TAAGATTCAATTTCTGGTTC+TGG | - | chr4_2:31936892-31936911 | None:intergenic | 30.0% |
| CACATGTAAGATTCAATTTC+TGG | - | chr4_2:31936898-31936917 | None:intergenic | 30.0% | |
| ATCTAACAGCAGAATTCTTT+AGG | + | chr4_2:31937059-31937078 | Msa0598050:CDS | 30.0% | |
| TTACGTACCAATCTTGAATT+TGG | - | chr4_2:31937124-31937143 | None:intergenic | 30.0% | |
| ! | ATTGGTACGTAATTTTCTAC+TGG | + | chr4_2:31937132-31937151 | Msa0598050:intron | 30.0% |
| !! | TTACTATTACAGGTCTTGTT+TGG | + | chr4_2:31937186-31937205 | Msa0598050:intron | 30.0% |
| !! | TACTATTACAGGTCTTGTTT+GGG | + | chr4_2:31937187-31937206 | Msa0598050:intron | 30.0% |
| ACCCATAACAAAACTATTGT+CGG | + | chr4_2:31937409-31937428 | Msa0598050:intron | 30.0% | |
| !! | TGTTTTTGTGTGAGTTTTTG+AGG | + | chr4_2:31937625-31937644 | Msa0598050:intron | 30.0% |
| AAAATTCCTGTTCCATACAT+AGG | - | chr4_2:31937756-31937775 | None:intergenic | 30.0% | |
| CATCACCTTAAACTTGATAA+TGG | - | chr4_2:31937822-31937841 | None:intergenic | 30.0% | |
| ! | CATTATCAAGTTTAAGGTGA+TGG | + | chr4_2:31937820-31937839 | Msa0598050:intron | 30.0% |
| TGATGGAAACAATCATGATT+TGG | + | chr4_2:31937837-31937856 | Msa0598050:intron | 30.0% | |
| !! | TGTTTTTGTGTGAGTTTTTG+AGG | + | chr4_2:31937625-31937644 | Msa0598050:intron | 30.0% |
| AGAAATAGTAGATGAGAGAA+AGG | + | chr4_2:31937995-31938014 | Msa0598050:intron | 30.0% | |
| TAGTTTACATGGGAAATACA+TGG | + | chr4_2:31938082-31938101 | Msa0598050:intron | 30.0% | |
| ATTATGTGAGTAAGTCAAGA+TGG | + | chr4_2:31938105-31938124 | Msa0598050:intron | 30.0% | |
| TTATGTGAGTAAGTCAAGAT+GGG | + | chr4_2:31938106-31938125 | Msa0598050:intron | 30.0% | |
| TGCTGCATAAAACAAAGAAA+AGG | - | chr4_2:31938468-31938487 | None:intergenic | 30.0% | |
| ! | GTAGTTGATATTGAATACCT+AGG | - | chr4_2:31938733-31938752 | None:intergenic | 30.0% |
| ! | TCAACTACTTGTTTAAGGTT+TGG | + | chr4_2:31938745-31938764 | Msa0598050:intron | 30.0% |
| AACTTACTAGAACAATGTCT+CGG | + | chr4_2:31938920-31938939 | Msa0598050:intron | 30.0% | |
| ! | TTTTAAATTTTGCAGGCTGA+TGG | + | chr4_2:31939173-31939192 | Msa0598050:intron | 30.0% |
| ! | TGATAATGAAAATGAAGGAG+GGG | + | chr4_2:31939272-31939291 | Msa0598050:exon | 30.0% |
| ACTGATGTTAGATACCTTTC+AGG | + | chr4_2:31936780-31936799 | Msa0598050:intron | 35.0% | |
| !!! | AATTACTGATTCTTTTGGGG+AGG | + | chr4_2:31936847-31936866 | Msa0598050:intron | 35.0% |
| !!! | ATTACTGATTCTTTTGGGGA+GGG | + | chr4_2:31936848-31936867 | Msa0598050:intron | 35.0% |
| CTTACATGTGTGATACTTCT+TGG | + | chr4_2:31936908-31936927 | Msa0598050:intron | 35.0% | |
| ! | TTGAATTTGGTGGTCCATTT+GGG | - | chr4_2:31937111-31937130 | None:intergenic | 35.0% |
| !!! | GCCGACAATAGTTTTGTTAT+GGG | - | chr4_2:31937413-31937432 | None:intergenic | 35.0% |
| CATAACAAAACTATTGTCGG+CGG | + | chr4_2:31937412-31937431 | Msa0598050:intron | 35.0% | |
| !! | GTGCTGATTAGTAACTTCAT+TGG | + | chr4_2:31937496-31937515 | Msa0598050:intron | 35.0% |
| ATGAAACCTATGTATGGAAC+AGG | + | chr4_2:31937747-31937766 | Msa0598050:intron | 35.0% | |
| ! | GATAATGGTTTCAATCACCT+TGG | - | chr4_2:31937807-31937826 | None:intergenic | 35.0% |
| ATATTCCATCAGCAACTCTA+AGG | - | chr4_2:31938061-31938080 | None:intergenic | 35.0% | |
| TATGTGAGTAAGTCAAGATG+GGG | + | chr4_2:31938107-31938126 | Msa0598050:intron | 35.0% | |
| TATTGAATAACTGCCCATGA+GGG | - | chr4_2:31938399-31938418 | None:intergenic | 35.0% | |
| ATATTGAATAACTGCCCATG+AGG | - | chr4_2:31938400-31938419 | None:intergenic | 35.0% | |
| !! | AGTTGGTTTGCAAGGATAAT+AGG | + | chr4_2:31938699-31938718 | Msa0598050:intron | 35.0% |
| GATAATAGGATATCACACCT+AGG | + | chr4_2:31938713-31938732 | Msa0598050:intron | 35.0% | |
| ATGTAGTGACATGAATGCAA+AGG | - | chr4_2:31938844-31938863 | None:intergenic | 35.0% | |
| GATTGAGAAAACAGAACGTA+AGG | + | chr4_2:31938956-31938975 | Msa0598050:CDS | 35.0% | |
| TTACATGTGTAGCATGGATT+TGG | - | chr4_2:31938995-31939014 | None:intergenic | 35.0% | |
| GAAAACTTACATGTGTAGCA+TGG | - | chr4_2:31939001-31939020 | None:intergenic | 35.0% | |
| !! | TTGACATTGCTTTGTTTCCT+TGG | + | chr4_2:31939106-31939125 | Msa0598050:intron | 35.0% |
| TGAGCTAATTGACAAAGCTT+CGG | - | chr4_2:31939227-31939246 | None:intergenic | 35.0% | |
| ! | GCAATGTCATTTGAAAGCGT+TGG | - | chr4_2:31936956-31936975 | None:intergenic | 40.0% |
| GAACCAGAAAAGAACCCAAA+TGG | + | chr4_2:31937094-31937113 | Msa0598050:CDS | 40.0% | |
| ! | CTTGAATTTGGTGGTCCATT+TGG | - | chr4_2:31937112-31937131 | None:intergenic | 40.0% |
| TGGACCACCAAATTCAAGAT+TGG | + | chr4_2:31937114-31937133 | Msa0598050:CDS | 40.0% | |
| CGTACCAATCTTGAATTTGG+TGG | - | chr4_2:31937121-31937140 | None:intergenic | 40.0% | |
| !! | TATTACAGGTCTTGTTTGGG+TGG | + | chr4_2:31937190-31937209 | Msa0598050:intron | 40.0% |
| AATCTATGAAGCTCTTGCTG+AGG | + | chr4_2:31937365-31937384 | Msa0598050:intron | 40.0% | |
| !!! | CGCCGACAATAGTTTTGTTA+TGG | - | chr4_2:31937414-31937433 | None:intergenic | 40.0% |
| TGTCTACTACTTGAACTCCA+AGG | + | chr4_2:31937787-31937806 | Msa0598050:intron | 40.0% | |
| ATGATCCTTAGAGTTGCTGA+TGG | + | chr4_2:31938053-31938072 | Msa0598050:intron | 40.0% | |
| ACTTACGATTGAATCCCTCA+TGG | + | chr4_2:31938382-31938401 | Msa0598050:intron | 40.0% | |
| CTTACGATTGAATCCCTCAT+GGG | + | chr4_2:31938383-31938402 | Msa0598050:intron | 40.0% | |
| ! | GAAGGCTAACTGACTTTAGT+TGG | + | chr4_2:31938682-31938701 | Msa0598050:intron | 40.0% |
| !! | CTGACTTTAGTTGGTTTGCA+AGG | + | chr4_2:31938691-31938710 | Msa0598050:intron | 40.0% |
| AGAACAATGTCTCGGTTACT+TGG | + | chr4_2:31938928-31938947 | Msa0598050:intron | 40.0% | |
| GAACAATGTCTCGGTTACTT+GGG | + | chr4_2:31938929-31938948 | Msa0598050:intron | 40.0% | |
| AACAATGTCTCGGTTACTTG+GGG | + | chr4_2:31938930-31938949 | Msa0598050:CDS | 40.0% | |
| ! | TGTGATACTTCTTGGTGTGC+AGG | + | chr4_2:31936916-31936935 | Msa0598050:intron | 45.0% |
| ATCCAGTGCTTCATTTGCAG+CGG | - | chr4_2:31936981-31937000 | None:intergenic | 45.0% | |
| AACGCAAGAAGACAGTTACG+CGG | + | chr4_2:31937014-31937033 | Msa0598050:CDS | 45.0% | |
| !! | GGTCCATTTGGGTTCTTTTC+TGG | - | chr4_2:31937100-31937119 | None:intergenic | 45.0% |
| GGCTGATTGAGAATGTGTCA+AGG | + | chr4_2:31937517-31937536 | Msa0598050:intron | 45.0% | |
| ACAATGTCTCGGTTACTTGG+GGG | + | chr4_2:31938931-31938950 | Msa0598050:CDS | 45.0% | |
| CATGTGTAGCATGGATTTGG+AGG | - | chr4_2:31938992-31939011 | None:intergenic | 45.0% | |
| !!! | CAATAAATATTATTATTTTA+TGG | + | chr4_2:31937296-31937315 | Msa0598050:intron | 5.0% |
| !!! | ATTATCATATTATTATTTTT+AGG | + | chr4_2:31939335-31939354 | Msa0598050:three_prime_UTR | 5.0% |
| !! | CTGATTCTTTTGGGGAGGGA+TGG | + | chr4_2:31936852-31936871 | Msa0598050:intron | 50.0% |
| !! | ATTCTTTTGGGGAGGGATGG+AGG | + | chr4_2:31936855-31936874 | Msa0598050:intron | 50.0% |
| AACCGCTGCAAATGAAGCAC+TGG | + | chr4_2:31936976-31936995 | Msa0598050:CDS | 50.0% | |
| CTGTCTTCTTGCGTTCGTCT+CGG | - | chr4_2:31937009-31937028 | None:intergenic | 50.0% | |
| ! | AGTTACGCGGCTGGTTGATA+TGG | + | chr4_2:31937027-31937046 | Msa0598050:CDS | 50.0% |
| !! | CAGGTCTTGTTTGGGTGGAA+TGG | + | chr4_2:31937195-31937214 | Msa0598050:intron | 50.0% |
| CTATGAAGCTCTTGCTGAGG+CGG | + | chr4_2:31937368-31937387 | Msa0598050:intron | 50.0% | |
| AACACGGACAGAGAGAGAGT+TGG | - | chr4_2:31938227-31938246 | None:intergenic | 50.0% | |
| CCTGCTGCTGCAACTAAACA+CGG | - | chr4_2:31938243-31938262 | None:intergenic | 50.0% | |
| CGTGTTTAGTTGCAGCAGCA+GGG | + | chr4_2:31938241-31938260 | Msa0598050:intron | 50.0% | |
| GTGTAGCATGGATTTGGAGG+CGG | - | chr4_2:31938989-31939008 | None:intergenic | 50.0% | |
| !! | TTTTGGGGAGGGATGGAGGA+GGG | + | chr4_2:31936859-31936878 | Msa0598050:intron | 55.0% |
| CAAGAAGACAGTTACGCGGC+TGG | + | chr4_2:31937018-31937037 | Msa0598050:CDS | 55.0% | |
| ! | CGGACAGAGAGAGAGTTGGT+TGG | - | chr4_2:31938223-31938242 | None:intergenic | 55.0% |
| CCGTGTTTAGTTGCAGCAGC+AGG | + | chr4_2:31938240-31938259 | Msa0598050:intron | 55.0% | |
| !! | CTTTTGGGGAGGGATGGAGG+AGG | + | chr4_2:31936858-31936877 | Msa0598050:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 31936728 | 31939416 | 31936728 | ID=Msa0598050;Name=Msa0598050 |
| chr4_2 | mRNA | 31936728 | 31939416 | 31936728 | ID=Msa0598050-mRNA-1;Parent=Msa0598050;Name=Msa0598050-mRNA-1;_AED=0.56;_eAED=0.58;_QI=0|0.2|0.16|0.66|0.2|0.5|6|142|129 |
| chr4_2 | exon | 31936728 | 31936733 | 31936728 | ID=Msa0598050-mRNA-1:exon:7818;Parent=Msa0598050-mRNA-1 |
| chr4_2 | exon | 31936938 | 31937139 | 31936938 | ID=Msa0598050-mRNA-1:exon:7819;Parent=Msa0598050-mRNA-1 |
| chr4_2 | exon | 31938256 | 31938262 | 31938256 | ID=Msa0598050-mRNA-1:exon:7820;Parent=Msa0598050-mRNA-1 |
| chr4_2 | exon | 31938312 | 31938318 | 31938312 | ID=Msa0598050-mRNA-1:exon:7821;Parent=Msa0598050-mRNA-1 |
| chr4_2 | exon | 31938930 | 31939010 | 31938930 | ID=Msa0598050-mRNA-1:exon:7822;Parent=Msa0598050-mRNA-1 |
| chr4_2 | exon | 31939188 | 31939416 | 31939188 | ID=Msa0598050-mRNA-1:exon:7823;Parent=Msa0598050-mRNA-1 |
| chr4_2 | CDS | 31936728 | 31936733 | 31936728 | ID=Msa0598050-mRNA-1:cds;Parent=Msa0598050-mRNA-1 |
| chr4_2 | CDS | 31936938 | 31937139 | 31936938 | ID=Msa0598050-mRNA-1:cds;Parent=Msa0598050-mRNA-1 |
| chr4_2 | CDS | 31938256 | 31938262 | 31938256 | ID=Msa0598050-mRNA-1:cds;Parent=Msa0598050-mRNA-1 |
| chr4_2 | CDS | 31938312 | 31938318 | 31938312 | ID=Msa0598050-mRNA-1:cds;Parent=Msa0598050-mRNA-1 |
| chr4_2 | CDS | 31938930 | 31939010 | 31938930 | ID=Msa0598050-mRNA-1:cds;Parent=Msa0598050-mRNA-1 |
| chr4_2 | CDS | 31939188 | 31939274 | 31939188 | ID=Msa0598050-mRNA-1:cds;Parent=Msa0598050-mRNA-1 |
| chr4_2 | three_prime_UTR | 31939275 | 31939416 | 31939275 | ID=Msa0598050-mRNA-1:three_prime_utr;Parent=Msa0598050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
