Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375630 | KYP33224.1 | 52.661 | 357 | 155 | 9 | 5 | 357 | 1 | 347 | 2.30e-109 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375630 | sp|Q6AVI0|RSLE2_ORYSJ | 29.859 | 355 | 217 | 9 | 28 | 357 | 53 | 400 | 1.12e-43 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375630 | A0A151QSK3 | 52.661 | 357 | 155 | 9 | 5 | 357 | 1 | 347 | 1.10e-109 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375630 | Msa0502270 | 0.801598 | 8.349822e-49 | -8.615850e-47 |
| Msa0375630 | Msa0508110 | 0.807579 | 4.718976e-50 | -8.615850e-47 |
| Msa0375630 | Msa0529300 | 0.800074 | 1.709268e-48 | -8.615850e-47 |
| Msa0375630 | Msa0598050 | 0.819329 | 1.229544e-52 | -8.615850e-47 |
| Msa0375630 | Msa0767760 | 0.819425 | 1.169147e-52 | -8.615850e-47 |
| Msa0375630 | Msa0895500 | 0.809617 | 1.731623e-50 | -8.615850e-47 |
| Msa0375630 | Msa0927290 | 0.816703 | 4.823513e-52 | -8.615850e-47 |
| Msa0375630 | Msa1188370 | 0.800289 | 1.545566e-48 | -8.615850e-47 |
| Msa0375630 | Msa1268700 | 0.824770 | 6.742359e-54 | -8.615850e-47 |
| Msa0375630 | Msa1282580 | -0.800874 | 1.174617e-48 | -8.615850e-47 |
| Msa0375630 | Msa1287370 | -0.818637 | 1.767158e-52 | -8.615850e-47 |
| Msa0375630 | Msa1307070 | 0.831631 | 1.495907e-55 | -8.615850e-47 |
| Msa0375630 | Msa1316200 | 0.835641 | 1.490840e-56 | -8.615850e-47 |
| Msa0375630 | Msa1372760 | 0.807403 | 5.142130e-50 | -8.615850e-47 |
| Msa0375630 | Msa1373430 | -0.821386 | 4.151792e-53 | -8.615850e-47 |
| Msa0293650 | Msa0375630 | 0.820188 | 7.824594e-53 | -8.615850e-47 |
| Msa0313560 | Msa0375630 | 0.813149 | 2.962638e-51 | -8.615850e-47 |
| Msa0313960 | Msa0375630 | 0.821934 | 3.100386e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375630 | MtrunA17_Chr4g0052601 | 44.868 | 341 | 164 | 9 | 29 | 357 | 12 | 340 | 5.50e-82 | 256 |
| Msa0375630 | MtrunA17_Chr8g0354631 | 41.742 | 333 | 177 | 8 | 34 | 357 | 64 | 388 | 2.29e-72 | 239 |
| Msa0375630 | MtrunA17_Chr5g0402891 | 41.085 | 258 | 148 | 4 | 101 | 357 | 19 | 273 | 1.22e-54 | 189 |
| Msa0375630 | MtrunA17_Chr7g0245551 | 89.610 | 77 | 8 | 0 | 81 | 157 | 1 | 77 | 5.86e-43 | 144 |
| Msa0375630 | MtrunA17_Chr7g0263231 | 28.723 | 376 | 224 | 12 | 15 | 356 | 405 | 770 | 4.16e-36 | 139 |
| Msa0375630 | MtrunA17_Chr2g0333261 | 29.167 | 336 | 215 | 7 | 42 | 356 | 43 | 376 | 1.24e-34 | 134 |
| Msa0375630 | MtrunA17_Chr8g0383051 | 33.659 | 205 | 133 | 3 | 139 | 342 | 53 | 255 | 1.42e-33 | 127 |
| Msa0375630 | MtrunA17_Chr7g0263261 | 28.150 | 373 | 230 | 13 | 15 | 356 | 346 | 711 | 9.31e-33 | 129 |
| Msa0375630 | MtrunA17_Chr4g0052681 | 35.407 | 209 | 133 | 2 | 134 | 341 | 35 | 242 | 4.24e-32 | 127 |
| Msa0375630 | MtrunA17_Chr8g0383211 | 30.435 | 322 | 180 | 11 | 42 | 344 | 35 | 331 | 1.72e-31 | 125 |
| Msa0375630 | MtrunA17_Chr4g0003151 | 26.420 | 352 | 234 | 9 | 25 | 356 | 11 | 357 | 3.80e-31 | 124 |
| Msa0375630 | MtrunA17_Chr8g0383081 | 32.432 | 222 | 142 | 5 | 139 | 359 | 38 | 252 | 3.98e-29 | 118 |
| Msa0375630 | MtrunA17_Chr2g0308821 | 28.371 | 356 | 210 | 11 | 39 | 356 | 11 | 359 | 4.67e-28 | 115 |
| Msa0375630 | MtrunA17_Chr8g0383071 | 36.905 | 168 | 100 | 3 | 192 | 359 | 35 | 196 | 7.79e-28 | 110 |
| Msa0375630 | MtrunA17_Chr8g0359341 | 25.501 | 349 | 219 | 7 | 44 | 356 | 72 | 415 | 2.06e-27 | 113 |
| Msa0375630 | MtrunA17_Chr8g0383041 | 30.000 | 240 | 156 | 5 | 125 | 359 | 23 | 255 | 9.82e-26 | 108 |
| Msa0375630 | MtrunA17_Chr8g0383181 | 28.328 | 293 | 174 | 11 | 38 | 314 | 21 | 293 | 2.46e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375630 | AT3G42170.2 | 28.487 | 337 | 211 | 12 | 42 | 356 | 44 | 372 | 1.65e-29 | 120 |
| Msa0375630 | AT3G42170.1 | 28.487 | 337 | 211 | 12 | 42 | 356 | 66 | 394 | 1.69e-29 | 120 |
Find 76 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATGTTGACACTTATTTA+AGG | 0.190037 | 3_1:+75408980 | Msa0375630:CDS |
| AGATTCGTCATGCTGTTAAA+TGG | 0.226041 | 3_1:+75409211 | Msa0375630:CDS |
| TTGTAGAACATGAGGAATTT+AGG | 0.267499 | 3_1:+75408683 | Msa0375630:CDS |
| TGGGACAATCACGTCCTAAA+TGG | 0.268359 | 3_1:+75409099 | Msa0375630:CDS |
| TGCATAACATGATGAGTTCT+TGG | 0.303108 | 3_1:+75409079 | Msa0375630:CDS |
| TTAAACCTTATTGTGAAATC+TGG | 0.306371 | 3_1:+75409156 | Msa0375630:CDS |
| AAGGCAAAATGGAAAGAAAA+AGG | 0.311662 | 3_1:+75408420 | Msa0375630:CDS |
| TGTGAACATAATCCCCATTT+AGG | 0.321864 | 3_1:-75409113 | None:intergenic |
| TCAAGCCAGATTTCACAATA+AGG | 0.329442 | 3_1:-75409161 | None:intergenic |
| TGACACTTATTTAAGGGATT+GGG | 0.334904 | 3_1:+75408987 | Msa0375630:CDS |
| ATACATTGAGGCGTGACATC+TGG | 0.356810 | 3_1:+75408752 | Msa0375630:CDS |
| TTGACACTTATTTAAGGGAT+TGG | 0.364183 | 3_1:+75408986 | Msa0375630:CDS |
| CAAATCCTCGCCATCTAGAT+TGG | 0.370694 | 3_1:+75409236 | Msa0375630:CDS |
| TTTCCTTGATTGGGTCCCTT+GGG | 0.382544 | 3_1:-75408539 | None:intergenic |
| ATATGTTGACACTTATTTAA+GGG | 0.387932 | 3_1:+75408981 | Msa0375630:CDS |
| CCTCAGCTCATTGTAATTAG+TGG | 0.398098 | 3_1:+75408460 | Msa0375630:CDS |
| GGGACAATCACGTCCTAAAT+GGG | 0.402021 | 3_1:+75409100 | Msa0375630:CDS |
| GTACCCGACATAAGGCAAAA+TGG | 0.414053 | 3_1:+75408409 | Msa0375630:CDS |
| CTCCCGTGTGACCCGTGATT+TGG | 0.421704 | 3_1:-75408945 | None:intergenic |
| TATTGTGAAATCTGGCTTGA+AGG | 0.426745 | 3_1:+75409164 | Msa0375630:CDS |
| GGCACTCTATATTGAGGAGT+TGG | 0.435965 | 3_1:+75408774 | Msa0375630:CDS |
| GCACTCTATATTGAGGAGTT+GGG | 0.444579 | 3_1:+75408775 | Msa0375630:CDS |
| GCATAACATGATGAGTTCTT+GGG | 0.445556 | 3_1:+75409080 | Msa0375630:CDS |
| GGTCACACGGGAGACATGTT+AGG | 0.453943 | 3_1:+75408955 | Msa0375630:CDS |
| GATTCGTCATGCTGTTAAAT+GGG | 0.454005 | 3_1:+75409212 | Msa0375630:CDS |
| AATCATTACATCATTTGCCT+TGG | 0.464135 | 3_1:-75409049 | None:intergenic |
| CTGTTCAAAATTTGATCAAG+AGG | 0.473367 | 3_1:+75408606 | Msa0375630:CDS |
| AGTACAACAGCACCTTTGTA+TGG | 0.483326 | 3_1:-75409294 | None:intergenic |
| AAGGGACCCAATCAAGGAAA+AGG | 0.488607 | 3_1:+75408542 | Msa0375630:CDS |
| GACACTTATTTAAGGGATTG+GGG | 0.493863 | 3_1:+75408988 | Msa0375630:CDS |
| TCACAGAGGTACCCGACATA+AGG | 0.502407 | 3_1:+75408401 | Msa0375630:CDS |
| GTTGTATGGTAAGATATTAA+CGG | 0.503435 | 3_1:+75409011 | Msa0375630:CDS |
| CATGTTCTACAAAGCGGAAA+GGG | 0.508005 | 3_1:-75408672 | None:intergenic |
| ACACCCAAGGGACCCAATCA+AGG | 0.520129 | 3_1:+75408536 | Msa0375630:CDS |
| GAACATGATGTTCAATCTAC+TGG | 0.523261 | 3_1:+75408340 | Msa0375630:CDS |
| AGTGGTATGTGGAATCATCT+AGG | 0.530045 | 3_1:+75408487 | Msa0375630:CDS |
| TACAAAGCGGAAAGGGAGCT+CGG | 0.535566 | 3_1:-75408665 | None:intergenic |
| TTGCCAAATCACGGGTCACA+CGG | 0.540401 | 3_1:+75408942 | Msa0375630:CDS |
| TACATTGAGGCGTGACATCT+GGG | 0.540858 | 3_1:+75408753 | Msa0375630:CDS |
| ACATTGAGGTTTGTATCTTG+TGG | 0.546077 | 3_1:-75408280 | None:intergenic |
| CTCAGCTCATTGTAATTAGT+GGG | 0.551596 | 3_1:+75408461 | Msa0375630:CDS |
| CACTCTATATTGAGGAGTTG+GGG | 0.572025 | 3_1:+75408776 | Msa0375630:CDS |
| CGCCTCAATGTATATCGTGA+GGG | 0.576371 | 3_1:-75408742 | None:intergenic |
| AAGTTCTCACTAATTGCGCT+CGG | 0.582273 | 3_1:-75408633 | None:intergenic |
| TTTCCGCTTTGTAGAACATG+AGG | 0.583340 | 3_1:+75408675 | Msa0375630:CDS |
| TTAGTGGGACAAGTGGTATG+TGG | 0.585239 | 3_1:+75408476 | Msa0375630:CDS |
| GTAACAAGCGGTCTAGTGTG+TGG | 0.596589 | 3_1:+75408371 | Msa0375630:CDS |
| TGGTAAGATATTAACGGTAA+CGG | 0.597014 | 3_1:+75409017 | Msa0375630:CDS |
| CATCTGGGCACTCTATATTG+AGG | 0.598968 | 3_1:+75408768 | Msa0375630:CDS |
| TAACAAGCGGTCTAGTGTGT+GGG | 0.599129 | 3_1:+75408372 | Msa0375630:CDS |
| TGAGTTTGACAACAGATACA+TGG | 0.600827 | 3_1:+75408833 | Msa0375630:CDS |
| TCATGTTCTACAAAGCGGAA+AGG | 0.603082 | 3_1:-75408673 | None:intergenic |
| TATAACAATGGTGACACCCA+AGG | 0.604425 | 3_1:+75408523 | Msa0375630:CDS |
| TTCACGATCAACAAAATGAA+CGG | 0.605466 | 3_1:-75408890 | None:intergenic |
| TGTGAAATCTGGCTTGAAGG+AGG | 0.610118 | 3_1:+75409167 | Msa0375630:CDS |
| ATAGTTCATTCGACACATTG+AGG | 0.613040 | 3_1:-75408294 | None:intergenic |
| CACTAATTACAATGAGCTGA+GGG | 0.616686 | 3_1:-75408459 | None:intergenic |
| ATTCCTCATGTTCTACAAAG+CGG | 0.621285 | 3_1:-75408678 | None:intergenic |
| ATTGTAATTAGTGGGACAAG+TGG | 0.626484 | 3_1:+75408469 | Msa0375630:CDS |
| TGCCAAATCACGGGTCACAC+GGG | 0.627003 | 3_1:+75408943 | Msa0375630:CDS |
| ACGCCTCAATGTATATCGTG+AGG | 0.627733 | 3_1:-75408743 | None:intergenic |
| ACACTTATTTAAGGGATTGG+GGG | 0.628232 | 3_1:+75408989 | Msa0375630:CDS |
| CCACTAATTACAATGAGCTG+AGG | 0.632249 | 3_1:-75408460 | None:intergenic |
| GATGAGAAAATTCCATACAA+AGG | 0.635607 | 3_1:+75409282 | Msa0375630:CDS |
| ATAACAATGGTGACACCCAA+GGG | 0.637467 | 3_1:+75408524 | Msa0375630:CDS |
| TCCCCTCACGATATACATTG+AGG | 0.649335 | 3_1:+75408740 | Msa0375630:CDS |
| GCCTCAATGTATATCGTGAG+GGG | 0.653089 | 3_1:-75408741 | None:intergenic |
| AGATGCACTAAGTATAACAA+TGG | 0.657414 | 3_1:+75408511 | Msa0375630:CDS |
| GGACAATCACGTCCTAAATG+GGG | 0.660028 | 3_1:+75409101 | Msa0375630:CDS |
| CGTGAGGGGATGTCGAATCG+AGG | 0.661682 | 3_1:-75408727 | None:intergenic |
| CTGGCAACACTAGTAACAAG+CGG | 0.678698 | 3_1:+75408359 | Msa0375630:CDS |
| GGTAACGGTGGATAATGCCA+AGG | 0.682271 | 3_1:+75409032 | Msa0375630:CDS |
| GGCTTGAAGGAGGATAAACA+AGG | 0.683086 | 3_1:+75409177 | Msa0375630:CDS |
| TAAGATATTAACGGTAACGG+TGG | 0.690791 | 3_1:+75409020 | Msa0375630:CDS |
| GCTTGAAGGAGGATAAACAA+GGG | 0.733936 | 3_1:+75409178 | Msa0375630:CDS |
| TGTGTGGGAACATTTCACAG+AGG | 0.819290 | 3_1:+75408387 | Msa0375630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAGTTTTGTTTA+TGG | + | chr3_1:75407633-75407652 | Msa0375630:intron | 10.0% |
| !!! | TTTTTTTAAGTTTTGTTTAT+GGG | + | chr3_1:75407634-75407653 | Msa0375630:intron | 10.0% |
| !!! | TTTTGTTTAATTTTTGTTTC+TGG | + | chr3_1:75407713-75407732 | Msa0375630:intron | 15.0% |
| !!! | TTTGTTTAATTTTTGTTTCT+GGG | + | chr3_1:75407714-75407733 | Msa0375630:intron | 15.0% |
| !!! | TTTGTTTGATTTCTGTTTAT+AGG | + | chr3_1:75407685-75407704 | Msa0375630:intron | 20.0% |
| !!! | TTTTTGAGTATGATTGATTT+TGG | + | chr3_1:75407752-75407771 | Msa0375630:intron | 20.0% |
| !!! | TTTTGAGTATGATTGATTTT+GGG | + | chr3_1:75407753-75407772 | Msa0375630:intron | 20.0% |
| !!! | ATATAGCCAATTATTGATTT+TGG | + | chr3_1:75407953-75407972 | Msa0375630:intron | 20.0% |
| !! | TCATTACCAAAATCAATAAT+TGG | - | chr3_1:75407962-75407981 | None:intergenic | 20.0% |
| !! | AATATGTTGACACTTATTTA+AGG | + | chr3_1:75408980-75408999 | Msa0375630:CDS | 20.0% |
| !! | ATATGTTGACACTTATTTAA+GGG | + | chr3_1:75408981-75409000 | Msa0375630:CDS | 20.0% |
| ! | GAAATAGAAGGAAATGAAAA+TGG | - | chr3_1:75407810-75407829 | None:intergenic | 25.0% |
| ! | AAAGAAGAACTAGAAATAGA+AGG | - | chr3_1:75407822-75407841 | None:intergenic | 25.0% |
| ! | TAGTTTGAATTTAGCAAGTT+TGG | + | chr3_1:75407858-75407877 | Msa0375630:intron | 25.0% |
| ! | ACTTGGATAACCAAAAAATT+AGG | + | chr3_1:75408091-75408110 | Msa0375630:intron | 25.0% |
| ! | ATAACCAAAAAATTAGGTAC+TGG | + | chr3_1:75408097-75408116 | Msa0375630:intron | 25.0% |
| ! | AATAGGAGCTAATTAAGTTA+TGG | + | chr3_1:75408129-75408148 | Msa0375630:intron | 25.0% |
| ! | ACATCTGTATAACAAGAAAA+TGG | - | chr3_1:75408234-75408253 | None:intergenic | 25.0% |
| ! | AAGGAGAAAAATCGTTAAAA+AGG | + | chr3_1:75408561-75408580 | Msa0375630:CDS | 25.0% |
| ! | AGGAGAAAAATCGTTAAAAA+GGG | + | chr3_1:75408562-75408581 | Msa0375630:CDS | 25.0% |
| ! | AAAAAAGTCTTGAAGAATTG+TGG | + | chr3_1:75408805-75408824 | Msa0375630:CDS | 25.0% |
| ! | GTTGTATGGTAAGATATTAA+CGG | + | chr3_1:75409011-75409030 | Msa0375630:CDS | 25.0% |
| ! | TTAAACCTTATTGTGAAATC+TGG | + | chr3_1:75409156-75409175 | Msa0375630:CDS | 25.0% |
| GTTTATGGGTATGATTGATT+TGG | + | chr3_1:75407648-75407667 | Msa0375630:intron | 30.0% | |
| !! | TTTCTGGGTATGATTGATTT+TGG | + | chr3_1:75407729-75407748 | Msa0375630:intron | 30.0% |
| !!! | ACAACCAGTACCTAATTTTT+TGG | - | chr3_1:75408104-75408123 | None:intergenic | 30.0% |
| AACCACTGCTAATTAAGTTA+TGG | + | chr3_1:75408174-75408193 | Msa0375630:intron | 30.0% | |
| AAGGCAAAATGGAAAGAAAA+AGG | + | chr3_1:75408420-75408439 | Msa0375630:CDS | 30.0% | |
| AGATGCACTAAGTATAACAA+TGG | + | chr3_1:75408511-75408530 | Msa0375630:CDS | 30.0% | |
| ! | TTTTCTCCTTTTCCTTGATT+GGG | - | chr3_1:75408551-75408570 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTTTCCTTGAT+TGG | - | chr3_1:75408552-75408571 | None:intergenic | 30.0% |
| ! | TGATCAAATTTTGAACAGCT+TGG | - | chr3_1:75408604-75408623 | None:intergenic | 30.0% |
| CTGTTCAAAATTTGATCAAG+AGG | + | chr3_1:75408606-75408625 | Msa0375630:CDS | 30.0% | |
| TTGTAGAACATGAGGAATTT+AGG | + | chr3_1:75408683-75408702 | Msa0375630:CDS | 30.0% | |
| TTCACGATCAACAAAATGAA+CGG | - | chr3_1:75408893-75408912 | None:intergenic | 30.0% | |
| TTGACACTTATTTAAGGGAT+TGG | + | chr3_1:75408986-75409005 | Msa0375630:CDS | 30.0% | |
| TGACACTTATTTAAGGGATT+GGG | + | chr3_1:75408987-75409006 | Msa0375630:CDS | 30.0% | |
| TGGTAAGATATTAACGGTAA+CGG | + | chr3_1:75409017-75409036 | Msa0375630:CDS | 30.0% | |
| AATCATTACATCATTTGCCT+TGG | - | chr3_1:75409052-75409071 | None:intergenic | 30.0% | |
| ! | ATGAACTTTTCCAATCTAGA+TGG | - | chr3_1:75409249-75409268 | None:intergenic | 30.0% |
| GATGAGAAAATTCCATACAA+AGG | + | chr3_1:75409282-75409301 | Msa0375630:CDS | 30.0% | |
| CACTTGACAACATAGAAAAG+TGG | - | chr3_1:75407886-75407905 | None:intergenic | 35.0% | |
| ! | TTTTCTATGTTGTCAAGTGC+AGG | + | chr3_1:75407887-75407906 | Msa0375630:intron | 35.0% |
| AAGTCTTACAAGGACTGAAT+TGG | - | chr3_1:75408075-75408094 | None:intergenic | 35.0% | |
| AATTCAGTCCTTGTAAGACT+TGG | + | chr3_1:75408074-75408093 | Msa0375630:intron | 35.0% | |
| TTGGTTATCCAAGTCTTACA+AGG | - | chr3_1:75408085-75408104 | None:intergenic | 35.0% | |
| GACCATAACTTAATTAGCAG+TGG | - | chr3_1:75408179-75408198 | None:intergenic | 35.0% | |
| ACATTGAGGTTTGTATCTTG+TGG | - | chr3_1:75408283-75408302 | None:intergenic | 35.0% | |
| ATAGTTCATTCGACACATTG+AGG | - | chr3_1:75408297-75408316 | None:intergenic | 35.0% | |
| GAACATGATGTTCAATCTAC+TGG | + | chr3_1:75408340-75408359 | Msa0375630:CDS | 35.0% | |
| ! | TTTCCATTTTGCCTTATGTC+GGG | - | chr3_1:75408415-75408434 | None:intergenic | 35.0% |
| ! | CTTTCCATTTTGCCTTATGT+CGG | - | chr3_1:75408416-75408435 | None:intergenic | 35.0% |
| CACTAATTACAATGAGCTGA+GGG | - | chr3_1:75408462-75408481 | None:intergenic | 35.0% | |
| CTCAGCTCATTGTAATTAGT+GGG | + | chr3_1:75408461-75408480 | Msa0375630:CDS | 35.0% | |
| ATTGTAATTAGTGGGACAAG+TGG | + | chr3_1:75408469-75408488 | Msa0375630:CDS | 35.0% | |
| ATTCCTCATGTTCTACAAAG+CGG | - | chr3_1:75408681-75408700 | None:intergenic | 35.0% | |
| TGAGTTTGACAACAGATACA+TGG | + | chr3_1:75408833-75408852 | Msa0375630:CDS | 35.0% | |
| ! | CATCAACTTTTGCCAAATCA+CGG | + | chr3_1:75408933-75408952 | Msa0375630:CDS | 35.0% |
| ! | ATCAACTTTTGCCAAATCAC+GGG | + | chr3_1:75408934-75408953 | Msa0375630:CDS | 35.0% |
| GACACTTATTTAAGGGATTG+GGG | + | chr3_1:75408988-75409007 | Msa0375630:CDS | 35.0% | |
| ACACTTATTTAAGGGATTGG+GGG | + | chr3_1:75408989-75409008 | Msa0375630:CDS | 35.0% | |
| ! | TAAGATATTAACGGTAACGG+TGG | + | chr3_1:75409020-75409039 | Msa0375630:CDS | 35.0% |
| TGCATAACATGATGAGTTCT+TGG | + | chr3_1:75409079-75409098 | Msa0375630:CDS | 35.0% | |
| GCATAACATGATGAGTTCTT+GGG | + | chr3_1:75409080-75409099 | Msa0375630:CDS | 35.0% | |
| TGTGAACATAATCCCCATTT+AGG | - | chr3_1:75409116-75409135 | None:intergenic | 35.0% | |
| TCAAGCCAGATTTCACAATA+AGG | - | chr3_1:75409164-75409183 | None:intergenic | 35.0% | |
| ! | TATTGTGAAATCTGGCTTGA+AGG | + | chr3_1:75409164-75409183 | Msa0375630:CDS | 35.0% |
| AGATTCGTCATGCTGTTAAA+TGG | + | chr3_1:75409211-75409230 | Msa0375630:CDS | 35.0% | |
| GATTCGTCATGCTGTTAAAT+GGG | + | chr3_1:75409212-75409231 | Msa0375630:CDS | 35.0% | |
| ! | CTCAATGTTAGTCTAGGTAC+TGG | + | chr3_1:75407910-75407929 | Msa0375630:intron | 40.0% |
| ! | GTTAAAGAAGCGCATAGGTT+AGG | - | chr3_1:75407996-75408015 | None:intergenic | 40.0% |
| ! | AGCAAGTTAAAGAAGCGCAT+AGG | - | chr3_1:75408001-75408020 | None:intergenic | 40.0% |
| !! | GGTACTGGTTGTGTGAAAAT+AGG | + | chr3_1:75408112-75408131 | Msa0375630:intron | 40.0% |
| CCACTAATTACAATGAGCTG+AGG | - | chr3_1:75408463-75408482 | None:intergenic | 40.0% | |
| CCTCAGCTCATTGTAATTAG+TGG | + | chr3_1:75408460-75408479 | Msa0375630:CDS | 40.0% | |
| AGTGGTATGTGGAATCATCT+AGG | + | chr3_1:75408487-75408506 | Msa0375630:CDS | 40.0% | |
| TATAACAATGGTGACACCCA+AGG | + | chr3_1:75408523-75408542 | Msa0375630:CDS | 40.0% | |
| ATAACAATGGTGACACCCAA+GGG | + | chr3_1:75408524-75408543 | Msa0375630:CDS | 40.0% | |
| AAGTTCTCACTAATTGCGCT+CGG | - | chr3_1:75408636-75408655 | None:intergenic | 40.0% | |
| CATGTTCTACAAAGCGGAAA+GGG | - | chr3_1:75408675-75408694 | None:intergenic | 40.0% | |
| TCATGTTCTACAAAGCGGAA+AGG | - | chr3_1:75408676-75408695 | None:intergenic | 40.0% | |
| TTTCCGCTTTGTAGAACATG+AGG | + | chr3_1:75408675-75408694 | Msa0375630:CDS | 40.0% | |
| GCACTCTATATTGAGGAGTT+GGG | + | chr3_1:75408775-75408794 | Msa0375630:CDS | 40.0% | |
| CACTCTATATTGAGGAGTTG+GGG | + | chr3_1:75408776-75408795 | Msa0375630:CDS | 40.0% | |
| GCTTGAAGGAGGATAAACAA+GGG | + | chr3_1:75409178-75409197 | Msa0375630:CDS | 40.0% | |
| AGTACAACAGCACCTTTGTA+TGG | - | chr3_1:75409297-75409316 | None:intergenic | 40.0% | |
| ! | TGCAGGCTCAATGTTAGTCT+AGG | + | chr3_1:75407904-75407923 | Msa0375630:intron | 45.0% |
| CTGGCAACACTAGTAACAAG+CGG | + | chr3_1:75408359-75408378 | Msa0375630:CDS | 45.0% | |
| TAACAAGCGGTCTAGTGTGT+GGG | + | chr3_1:75408372-75408391 | Msa0375630:CDS | 45.0% | |
| TGTGTGGGAACATTTCACAG+AGG | + | chr3_1:75408387-75408406 | Msa0375630:CDS | 45.0% | |
| GTACCCGACATAAGGCAAAA+TGG | + | chr3_1:75408409-75408428 | Msa0375630:CDS | 45.0% | |
| TTAGTGGGACAAGTGGTATG+TGG | + | chr3_1:75408476-75408495 | Msa0375630:CDS | 45.0% | |
| TTTCCTTGATTGGGTCCCTT+GGG | - | chr3_1:75408542-75408561 | None:intergenic | 45.0% | |
| ! | TTTTCCTTGATTGGGTCCCT+TGG | - | chr3_1:75408543-75408562 | None:intergenic | 45.0% |
| AAGGGACCCAATCAAGGAAA+AGG | + | chr3_1:75408542-75408561 | Msa0375630:CDS | 45.0% | |
| TCCCCTCACGATATACATTG+AGG | + | chr3_1:75408740-75408759 | Msa0375630:CDS | 45.0% | |
| GCCTCAATGTATATCGTGAG+GGG | - | chr3_1:75408744-75408763 | None:intergenic | 45.0% | |
| CGCCTCAATGTATATCGTGA+GGG | - | chr3_1:75408745-75408764 | None:intergenic | 45.0% | |
| ACGCCTCAATGTATATCGTG+AGG | - | chr3_1:75408746-75408765 | None:intergenic | 45.0% | |
| ATACATTGAGGCGTGACATC+TGG | + | chr3_1:75408752-75408771 | Msa0375630:CDS | 45.0% | |
| TACATTGAGGCGTGACATCT+GGG | + | chr3_1:75408753-75408772 | Msa0375630:CDS | 45.0% | |
| CATCTGGGCACTCTATATTG+AGG | + | chr3_1:75408768-75408787 | Msa0375630:CDS | 45.0% | |
| GGCACTCTATATTGAGGAGT+TGG | + | chr3_1:75408774-75408793 | Msa0375630:CDS | 45.0% | |
| TTAAGGGATTGGGGGTTGTA+TGG | + | chr3_1:75408997-75409016 | Msa0375630:CDS | 45.0% | |
| TGGGACAATCACGTCCTAAA+TGG | + | chr3_1:75409099-75409118 | Msa0375630:CDS | 45.0% | |
| GGGACAATCACGTCCTAAAT+GGG | + | chr3_1:75409100-75409119 | Msa0375630:CDS | 45.0% | |
| GGACAATCACGTCCTAAATG+GGG | + | chr3_1:75409101-75409120 | Msa0375630:CDS | 45.0% | |
| ! | TGTGAAATCTGGCTTGAAGG+AGG | + | chr3_1:75409167-75409186 | Msa0375630:CDS | 45.0% |
| GGCTTGAAGGAGGATAAACA+AGG | + | chr3_1:75409177-75409196 | Msa0375630:CDS | 45.0% | |
| CAAATCCTCGCCATCTAGAT+TGG | + | chr3_1:75409236-75409255 | Msa0375630:CDS | 45.0% | |
| ! | CTTTTCCAATCTAGATGGCG+AGG | - | chr3_1:75409244-75409263 | None:intergenic | 45.0% |
| GTAACAAGCGGTCTAGTGTG+TGG | + | chr3_1:75408371-75408390 | Msa0375630:CDS | 50.0% | |
| !! | TCACAGAGGTACCCGACATA+AGG | + | chr3_1:75408401-75408420 | Msa0375630:CDS | 50.0% |
| TACAAAGCGGAAAGGGAGCT+CGG | - | chr3_1:75408668-75408687 | None:intergenic | 50.0% | |
| TTGCCAAATCACGGGTCACA+CGG | + | chr3_1:75408942-75408961 | Msa0375630:CDS | 50.0% | |
| ! | GGTAACGGTGGATAATGCCA+AGG | + | chr3_1:75409032-75409051 | Msa0375630:CDS | 50.0% |
| ACACCCAAGGGACCCAATCA+AGG | + | chr3_1:75408536-75408555 | Msa0375630:CDS | 55.0% | |
| TGCCAAATCACGGGTCACAC+GGG | + | chr3_1:75408943-75408962 | Msa0375630:CDS | 55.0% | |
| GGTCACACGGGAGACATGTT+AGG | + | chr3_1:75408955-75408974 | Msa0375630:CDS | 55.0% | |
| CGTGAGGGGATGTCGAATCG+AGG | - | chr3_1:75408730-75408749 | None:intergenic | 60.0% | |
| CTCCCGTGTGACCCGTGATT+TGG | - | chr3_1:75408948-75408967 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75407622 | 75409332 | 75407622 | ID=Msa0375630;Name=Msa0375630 |
| chr3_1 | mRNA | 75407622 | 75409332 | 75407622 | ID=Msa0375630-mRNA-1;Parent=Msa0375630;Name=Msa0375630-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0|0|0.5|0|0.5|2|0|359 |
| chr3_1 | exon | 75407622 | 75407625 | 75407622 | ID=Msa0375630-mRNA-1:exon:17686;Parent=Msa0375630-mRNA-1 |
| chr3_1 | exon | 75408257 | 75409332 | 75408257 | ID=Msa0375630-mRNA-1:exon:17687;Parent=Msa0375630-mRNA-1 |
| chr3_1 | CDS | 75407622 | 75407625 | 75407622 | ID=Msa0375630-mRNA-1:cds;Parent=Msa0375630-mRNA-1 |
| chr3_1 | CDS | 75408257 | 75409332 | 75408257 | ID=Msa0375630-mRNA-1:cds;Parent=Msa0375630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
