Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600900 | XP_013455787.1 | 95.203 | 271 | 13 | 0 | 1 | 271 | 1 | 271 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600900 | sp|K4N0V2|BDH_LAVIN | 61.832 | 262 | 92 | 2 | 6 | 267 | 1 | 254 | 4.11e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0600900 | Msa0679830 | 0.824494 | 7.829063e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600900 | MtrunA17_Chr4g0026001 | 95.203 | 271 | 13 | 0 | 1 | 271 | 1 | 271 | 0.0 | 528 |
| Msa0600900 | MtrunA17_Chr4g0025971 | 83.026 | 271 | 46 | 0 | 1 | 271 | 1 | 271 | 2.93e-167 | 463 |
| Msa0600900 | MtrunA17_Chr4g0025981 | 80.077 | 261 | 50 | 1 | 6 | 266 | 35 | 293 | 1.29e-157 | 441 |
| Msa0600900 | MtrunA17_Chr4g0044111 | 58.779 | 262 | 105 | 1 | 12 | 270 | 11 | 272 | 3.41e-105 | 306 |
| Msa0600900 | MtrunA17_Chr7g0266981 | 58.779 | 262 | 105 | 1 | 12 | 270 | 11 | 272 | 5.88e-105 | 306 |
| Msa0600900 | MtrunA17_Chr7g0266891 | 58.077 | 260 | 106 | 1 | 14 | 270 | 7 | 266 | 3.03e-100 | 293 |
| Msa0600900 | MtrunA17_Chr4g0044131 | 55.513 | 263 | 109 | 4 | 12 | 268 | 6 | 266 | 9.76e-92 | 272 |
| Msa0600900 | MtrunA17_Chr7g0244061 | 52.015 | 273 | 108 | 4 | 12 | 262 | 27 | 298 | 6.33e-91 | 271 |
| Msa0600900 | MtrunA17_Chr7g0268591 | 51.351 | 259 | 117 | 3 | 12 | 262 | 31 | 288 | 3.97e-83 | 251 |
| Msa0600900 | MtrunA17_Chr7g0270441 | 50.193 | 259 | 123 | 3 | 12 | 266 | 4 | 260 | 4.14e-80 | 242 |
| Msa0600900 | MtrunA17_Chr3g0084871 | 50.554 | 271 | 124 | 3 | 8 | 268 | 10 | 280 | 3.00e-79 | 241 |
| Msa0600900 | MtrunA17_Chr7g0270451 | 50.196 | 255 | 122 | 3 | 12 | 262 | 4 | 257 | 5.58e-79 | 239 |
| Msa0600900 | MtrunA17_Chr2g0324021 | 48.473 | 262 | 130 | 3 | 12 | 269 | 4 | 264 | 3.25e-78 | 238 |
| Msa0600900 | MtrunA17_Chr7g0267001 | 50.570 | 263 | 104 | 5 | 12 | 268 | 6 | 248 | 1.38e-77 | 235 |
| Msa0600900 | MtrunA17_Chr7g0267011 | 60.870 | 184 | 72 | 0 | 12 | 195 | 6 | 189 | 1.20e-76 | 231 |
| Msa0600900 | MtrunA17_Chr7g0252031 | 50.190 | 263 | 120 | 4 | 12 | 264 | 33 | 294 | 4.00e-76 | 233 |
| Msa0600900 | MtrunA17_Chr6g0459261 | 45.420 | 262 | 137 | 4 | 1 | 257 | 13 | 273 | 5.77e-74 | 227 |
| Msa0600900 | MtrunA17_Chr7g0266991 | 51.709 | 234 | 93 | 2 | 8 | 238 | 19 | 235 | 7.15e-73 | 223 |
| Msa0600900 | MtrunA17_Chr4g0040371 | 46.591 | 264 | 127 | 4 | 10 | 262 | 15 | 275 | 5.74e-71 | 219 |
| Msa0600900 | MtrunA17_Chr6g0459331 | 45.802 | 262 | 136 | 4 | 1 | 257 | 1 | 261 | 1.39e-68 | 213 |
| Msa0600900 | MtrunA17_Chr6g0459301 | 44.400 | 250 | 134 | 3 | 13 | 257 | 13 | 262 | 5.98e-68 | 211 |
| Msa0600900 | MtrunA17_Chr6g0459281 | 45.968 | 248 | 129 | 3 | 13 | 255 | 12 | 259 | 9.08e-68 | 211 |
| Msa0600900 | MtrunA17_Chr6g0459271 | 44.275 | 262 | 140 | 4 | 1 | 257 | 1 | 261 | 1.04e-66 | 208 |
| Msa0600900 | MtrunA17_Chr6g0459351 | 44.355 | 248 | 133 | 3 | 13 | 255 | 12 | 259 | 7.09e-66 | 206 |
| Msa0600900 | MtrunA17_Chr4g0044121 | 54.190 | 179 | 79 | 1 | 95 | 270 | 1 | 179 | 2.05e-60 | 189 |
| Msa0600900 | MtrunA17_Chr6g0463951 | 48.837 | 172 | 83 | 3 | 95 | 262 | 1 | 171 | 2.78e-43 | 145 |
| Msa0600900 | MtrunA17_Chr7g0270471 | 50.685 | 146 | 68 | 2 | 123 | 264 | 3 | 148 | 1.23e-38 | 132 |
| Msa0600900 | MtrunA17_Chr3g0122901 | 32.308 | 260 | 156 | 7 | 10 | 259 | 71 | 320 | 1.72e-35 | 129 |
| Msa0600900 | MtrunA17_Chr3g0142651 | 43.182 | 132 | 70 | 1 | 95 | 221 | 1 | 132 | 1.16e-28 | 106 |
| Msa0600900 | MtrunA17_Chr7g0270461 | 51.020 | 98 | 48 | 0 | 12 | 109 | 44 | 141 | 1.26e-27 | 103 |
| Msa0600900 | MtrunA17_Chr1g0191751 | 33.721 | 258 | 155 | 7 | 13 | 259 | 100 | 352 | 2.47e-27 | 108 |
| Msa0600900 | MtrunA17_Chr4g0028921 | 31.939 | 263 | 167 | 7 | 14 | 267 | 11 | 270 | 3.75e-27 | 106 |
| Msa0600900 | MtrunA17_Chr4g0028911 | 31.179 | 263 | 169 | 7 | 14 | 267 | 11 | 270 | 1.54e-25 | 102 |
| Msa0600900 | MtrunA17_Chr7g0272961 | 29.845 | 258 | 165 | 7 | 13 | 259 | 39 | 291 | 4.12e-25 | 101 |
| Msa0600900 | MtrunA17_Chr8g0357481 | 31.227 | 269 | 159 | 7 | 14 | 265 | 14 | 273 | 1.97e-24 | 99.4 |
| Msa0600900 | MtrunA17_Chr3g0112261 | 32.422 | 256 | 154 | 9 | 14 | 259 | 19 | 265 | 1.15e-23 | 97.1 |
| Msa0600900 | MtrunA17_Chr4g0074511 | 31.274 | 259 | 161 | 8 | 13 | 259 | 39 | 292 | 4.27e-23 | 95.9 |
| Msa0600900 | MtrunA17_Chr3g0112271 | 30.000 | 260 | 163 | 8 | 14 | 264 | 17 | 266 | 6.10e-22 | 92.4 |
| Msa0600900 | MtrunA17_Chr7g0259521 | 28.421 | 285 | 155 | 11 | 1 | 262 | 1 | 259 | 1.99e-21 | 90.5 |
| Msa0600900 | MtrunA17_Chr0c30g0494101 | 30.888 | 259 | 160 | 8 | 13 | 259 | 39 | 290 | 2.98e-21 | 90.9 |
| Msa0600900 | MtrunA17_Chr4g0075531 | 28.063 | 253 | 166 | 7 | 12 | 257 | 5 | 248 | 4.59e-21 | 89.4 |
| Msa0600900 | MtrunA17_Chr1g0171831 | 30.279 | 251 | 160 | 6 | 11 | 247 | 11 | 260 | 4.89e-21 | 89.7 |
| Msa0600900 | MtrunA17_Chr3g0112151 | 30.000 | 260 | 163 | 10 | 14 | 264 | 86 | 335 | 3.32e-20 | 88.6 |
| Msa0600900 | MtrunA17_Chr7g0239511 | 29.927 | 274 | 169 | 10 | 1 | 259 | 1 | 266 | 4.52e-20 | 87.0 |
| Msa0600900 | MtrunA17_Chr3g0112171 | 30.000 | 260 | 163 | 12 | 14 | 264 | 15 | 264 | 5.31e-20 | 87.0 |
| Msa0600900 | MtrunA17_Chr4g0032141 | 29.344 | 259 | 166 | 10 | 14 | 264 | 56 | 305 | 1.23e-19 | 86.7 |
| Msa0600900 | MtrunA17_Chr4g0045041 | 31.225 | 253 | 146 | 10 | 16 | 253 | 6 | 245 | 7.85e-19 | 85.9 |
| Msa0600900 | MtrunA17_Chr4g0054341 | 31.156 | 199 | 132 | 4 | 15 | 211 | 3 | 198 | 8.21e-19 | 84.0 |
| Msa0600900 | MtrunA17_Chr7g0239491 | 29.572 | 257 | 161 | 9 | 14 | 258 | 15 | 263 | 1.58e-18 | 82.8 |
| Msa0600900 | MtrunA17_Chr4g0045061 | 29.644 | 253 | 150 | 8 | 16 | 253 | 6 | 245 | 2.87e-18 | 84.3 |
| Msa0600900 | MtrunA17_Chr3g0112141 | 28.571 | 259 | 168 | 10 | 14 | 264 | 17 | 266 | 3.06e-18 | 82.0 |
| Msa0600900 | MtrunA17_Chr4g0032181 | 31.156 | 199 | 118 | 8 | 70 | 259 | 59 | 247 | 3.10e-18 | 81.6 |
| Msa0600900 | MtrunA17_Chr7g0239481 | 31.418 | 261 | 154 | 9 | 14 | 259 | 15 | 265 | 1.21e-17 | 80.5 |
| Msa0600900 | MtrunA17_Chr7g0239451 | 28.938 | 273 | 171 | 10 | 1 | 258 | 1 | 265 | 1.43e-16 | 77.4 |
| Msa0600900 | MtrunA17_Chr7g0239501 | 29.197 | 274 | 171 | 10 | 1 | 259 | 1 | 266 | 3.44e-16 | 76.3 |
| Msa0600900 | MtrunA17_Chr8g0386171 | 27.547 | 265 | 135 | 10 | 14 | 235 | 52 | 302 | 5.38e-16 | 77.0 |
| Msa0600900 | MtrunA17_Chr7g0259531 | 26.087 | 253 | 174 | 4 | 14 | 257 | 11 | 259 | 1.28e-15 | 74.7 |
| Msa0600900 | MtrunA17_Chr3g0124471 | 30.000 | 180 | 118 | 4 | 18 | 195 | 30 | 203 | 1.04e-14 | 72.8 |
| Msa0600900 | MtrunA17_Chr8g0386201 | 26.887 | 212 | 145 | 5 | 16 | 222 | 47 | 253 | 1.49e-14 | 72.8 |
| Msa0600900 | MtrunA17_Chr3g0124481 | 30.636 | 173 | 99 | 4 | 31 | 195 | 29 | 188 | 5.65e-14 | 70.5 |
| Msa0600900 | MtrunA17_Chr4g0076931 | 31.343 | 201 | 121 | 7 | 17 | 207 | 9 | 202 | 3.05e-13 | 67.8 |
| Msa0600900 | MtrunA17_Chr1g0182511 | 25.993 | 277 | 169 | 9 | 1 | 256 | 1 | 262 | 1.26e-11 | 63.5 |
| Msa0600900 | MtrunA17_Chr8g0355281 | 28.125 | 192 | 129 | 3 | 20 | 202 | 75 | 266 | 7.95e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600900 | AT3G51680.1 | 52.555 | 274 | 109 | 6 | 12 | 266 | 30 | 301 | 2.49e-86 | 260 |
| Msa0600900 | AT1G52340.1 | 51.111 | 270 | 119 | 3 | 12 | 268 | 16 | 285 | 4.67e-83 | 251 |
| Msa0600900 | AT2G47140.1 | 50.397 | 252 | 120 | 3 | 12 | 259 | 4 | 254 | 5.32e-78 | 237 |
| Msa0600900 | AT4G03140.1 | 51.765 | 255 | 114 | 3 | 12 | 258 | 76 | 329 | 1.01e-77 | 239 |
| Msa0600900 | AT3G26770.1 | 50.000 | 256 | 118 | 4 | 12 | 258 | 39 | 293 | 2.73e-77 | 237 |
| Msa0600900 | AT3G26760.1 | 44.569 | 267 | 136 | 4 | 3 | 258 | 25 | 290 | 3.61e-73 | 226 |
| Msa0600900 | AT2G47130.1 | 48.425 | 254 | 119 | 5 | 13 | 259 | 5 | 253 | 1.14e-71 | 221 |
| Msa0600900 | AT3G29250.2 | 46.063 | 254 | 126 | 5 | 13 | 259 | 5 | 254 | 6.95e-69 | 214 |
| Msa0600900 | AT3G29250.3 | 46.063 | 254 | 126 | 5 | 13 | 259 | 41 | 290 | 2.32e-68 | 214 |
| Msa0600900 | AT2G47120.2 | 44.656 | 262 | 124 | 6 | 9 | 259 | 2 | 253 | 9.12e-68 | 211 |
| Msa0600900 | AT3G29250.1 | 45.560 | 259 | 129 | 6 | 9 | 259 | 38 | 292 | 1.67e-67 | 211 |
| Msa0600900 | AT2G47120.1 | 44.961 | 258 | 121 | 6 | 13 | 259 | 5 | 252 | 3.40e-67 | 209 |
| Msa0600900 | AT3G29260.1 | 45.238 | 252 | 132 | 4 | 12 | 259 | 4 | 253 | 4.02e-66 | 207 |
| Msa0600900 | AT3G42960.1 | 45.000 | 260 | 126 | 6 | 12 | 258 | 6 | 261 | 1.81e-55 | 180 |
| Msa0600900 | AT1G24360.1 | 30.980 | 255 | 164 | 5 | 11 | 259 | 71 | 319 | 7.89e-31 | 117 |
| Msa0600900 | AT1G63380.3 | 32.031 | 256 | 163 | 6 | 14 | 259 | 15 | 269 | 5.60e-28 | 108 |
| Msa0600900 | AT1G63380.2 | 32.031 | 256 | 163 | 6 | 14 | 259 | 22 | 276 | 5.92e-28 | 108 |
| Msa0600900 | AT1G63380.4 | 32.031 | 256 | 163 | 6 | 14 | 259 | 19 | 273 | 7.09e-28 | 108 |
| Msa0600900 | AT1G63380.1 | 32.031 | 256 | 163 | 6 | 14 | 259 | 17 | 271 | 7.33e-28 | 108 |
| Msa0600900 | AT2G30670.1 | 31.154 | 260 | 172 | 4 | 14 | 270 | 7 | 262 | 2.04e-27 | 107 |
| Msa0600900 | AT3G55290.2 | 31.373 | 255 | 165 | 6 | 14 | 259 | 17 | 270 | 4.59e-27 | 106 |
| Msa0600900 | AT1G62610.3 | 31.250 | 256 | 165 | 6 | 14 | 259 | 15 | 269 | 4.99e-27 | 106 |
| Msa0600900 | AT1G62610.4 | 31.250 | 256 | 165 | 6 | 14 | 259 | 19 | 273 | 5.02e-27 | 106 |
| Msa0600900 | AT1G62610.2 | 31.250 | 256 | 165 | 6 | 14 | 259 | 13 | 267 | 5.05e-27 | 106 |
| Msa0600900 | AT3G55290.1 | 31.373 | 255 | 165 | 6 | 14 | 259 | 18 | 271 | 5.52e-27 | 106 |
| Msa0600900 | AT1G62610.1 | 31.250 | 256 | 165 | 6 | 14 | 259 | 14 | 268 | 5.54e-27 | 106 |
| Msa0600900 | AT3G55310.1 | 31.783 | 258 | 160 | 7 | 14 | 259 | 17 | 270 | 1.15e-25 | 102 |
| Msa0600900 | AT2G29330.1 | 31.154 | 260 | 160 | 8 | 14 | 264 | 7 | 256 | 1.95e-25 | 101 |
| Msa0600900 | AT2G47150.1 | 31.641 | 256 | 116 | 8 | 14 | 268 | 1 | 198 | 2.32e-25 | 100 |
| Msa0600900 | AT2G29310.1 | 31.679 | 262 | 168 | 7 | 14 | 270 | 7 | 262 | 2.74e-25 | 101 |
| Msa0600900 | AT2G29340.2 | 31.373 | 255 | 166 | 6 | 14 | 264 | 7 | 256 | 2.98e-25 | 101 |
| Msa0600900 | AT2G29340.1 | 31.660 | 259 | 160 | 8 | 14 | 264 | 7 | 256 | 4.19e-25 | 101 |
| Msa0600900 | AT3G05260.1 | 30.620 | 258 | 162 | 7 | 13 | 259 | 36 | 287 | 1.00e-24 | 100 |
| Msa0600900 | AT1G54870.1 | 30.797 | 276 | 167 | 9 | 1 | 259 | 65 | 333 | 1.19e-24 | 101 |
| Msa0600900 | AT1G54870.2 | 30.797 | 276 | 167 | 9 | 1 | 259 | 67 | 335 | 1.28e-24 | 100 |
| Msa0600900 | AT3G46170.1 | 30.385 | 260 | 163 | 7 | 13 | 259 | 25 | 279 | 3.03e-24 | 99.0 |
| Msa0600900 | AT2G17845.1 | 29.502 | 261 | 165 | 7 | 14 | 259 | 47 | 303 | 4.10e-24 | 99.4 |
| Msa0600900 | AT1G07450.1 | 29.804 | 255 | 169 | 7 | 14 | 264 | 8 | 256 | 1.72e-23 | 96.7 |
| Msa0600900 | AT2G29300.1 | 31.373 | 255 | 159 | 8 | 14 | 259 | 7 | 254 | 2.99e-23 | 95.9 |
| Msa0600900 | AT1G07440.1 | 29.811 | 265 | 166 | 9 | 14 | 269 | 12 | 265 | 4.53e-23 | 95.5 |
| Msa0600900 | AT2G29300.2 | 31.102 | 254 | 159 | 8 | 14 | 258 | 7 | 253 | 1.80e-22 | 94.4 |
| Msa0600900 | AT5G06060.1 | 29.615 | 260 | 164 | 9 | 14 | 264 | 9 | 258 | 2.13e-22 | 93.6 |
| Msa0600900 | AT2G29320.1 | 30.798 | 263 | 164 | 9 | 11 | 264 | 10 | 263 | 4.70e-21 | 90.1 |
| Msa0600900 | AT4G05530.1 | 32.549 | 255 | 152 | 10 | 12 | 257 | 7 | 250 | 8.93e-21 | 89.0 |
| Msa0600900 | AT2G29290.2 | 28.346 | 254 | 175 | 4 | 14 | 264 | 7 | 256 | 1.46e-20 | 88.6 |
| Msa0600900 | AT2G29150.1 | 30.566 | 265 | 154 | 11 | 14 | 264 | 16 | 264 | 2.83e-20 | 88.2 |
| Msa0600900 | AT2G29370.1 | 28.571 | 259 | 168 | 7 | 14 | 264 | 16 | 265 | 5.26e-20 | 87.4 |
| Msa0600900 | AT3G12800.1 | 32.432 | 259 | 158 | 7 | 14 | 259 | 10 | 264 | 5.37e-20 | 87.8 |
| Msa0600900 | AT2G29260.1 | 28.044 | 271 | 178 | 9 | 2 | 264 | 56 | 317 | 5.52e-20 | 88.2 |
| Msa0600900 | AT2G29350.1 | 29.134 | 254 | 172 | 5 | 14 | 264 | 15 | 263 | 1.49e-19 | 85.9 |
| Msa0600900 | AT5G50700.1 | 28.509 | 228 | 150 | 6 | 14 | 235 | 45 | 265 | 1.64e-19 | 87.0 |
| Msa0600900 | AT5G50600.1 | 28.509 | 228 | 150 | 6 | 14 | 235 | 45 | 265 | 1.64e-19 | 87.0 |
| Msa0600900 | AT2G29340.3 | 31.795 | 195 | 128 | 3 | 14 | 205 | 7 | 199 | 1.74e-19 | 84.3 |
| Msa0600900 | AT2G29340.4 | 31.795 | 195 | 128 | 3 | 14 | 205 | 7 | 199 | 1.74e-19 | 84.3 |
| Msa0600900 | AT5G18210.1 | 28.464 | 267 | 167 | 10 | 7 | 257 | 1 | 259 | 2.18e-19 | 85.5 |
| Msa0600900 | AT5G50770.1 | 32.287 | 223 | 142 | 8 | 16 | 233 | 47 | 265 | 5.00e-19 | 85.9 |
| Msa0600900 | AT2G29310.3 | 32.308 | 195 | 127 | 3 | 14 | 205 | 7 | 199 | 1.09e-18 | 82.4 |
| Msa0600900 | AT5G10050.1 | 30.055 | 183 | 120 | 4 | 15 | 195 | 6 | 182 | 1.26e-18 | 83.6 |
| Msa0600900 | AT4G13180.1 | 30.147 | 272 | 168 | 9 | 1 | 259 | 1 | 263 | 2.65e-18 | 82.4 |
| Msa0600900 | AT2G29360.1 | 28.736 | 261 | 165 | 8 | 14 | 264 | 16 | 265 | 1.18e-17 | 80.9 |
| Msa0600900 | AT2G29310.2 | 29.915 | 234 | 153 | 7 | 36 | 264 | 27 | 254 | 1.39e-17 | 80.5 |
| Msa0600900 | AT5G65205.1 | 31.148 | 183 | 118 | 4 | 15 | 195 | 7 | 183 | 1.41e-17 | 80.9 |
| Msa0600900 | AT1G49670.2 | 31.683 | 202 | 124 | 4 | 16 | 204 | 6 | 206 | 1.44e-17 | 82.8 |
| Msa0600900 | AT1G49670.1 | 31.683 | 202 | 124 | 4 | 16 | 204 | 6 | 206 | 1.47e-17 | 82.8 |
| Msa0600900 | AT1G10310.1 | 30.583 | 206 | 140 | 3 | 3 | 207 | 4 | 207 | 2.47e-17 | 79.3 |
| Msa0600900 | AT5G50590.2 | 30.899 | 178 | 114 | 4 | 13 | 185 | 44 | 217 | 4.15e-17 | 79.0 |
| Msa0600900 | AT5G50690.2 | 30.899 | 178 | 114 | 4 | 13 | 185 | 44 | 217 | 4.15e-17 | 79.0 |
| Msa0600900 | AT5G18210.2 | 28.261 | 276 | 169 | 11 | 7 | 266 | 1 | 263 | 8.11e-17 | 78.6 |
| Msa0600900 | AT5G50590.1 | 30.899 | 178 | 114 | 4 | 13 | 185 | 44 | 217 | 9.84e-17 | 78.6 |
| Msa0600900 | AT5G50690.1 | 30.899 | 178 | 114 | 4 | 13 | 185 | 44 | 217 | 9.84e-17 | 78.6 |
| Msa0600900 | AT3G47350.2 | 28.856 | 201 | 127 | 6 | 16 | 208 | 46 | 238 | 3.68e-16 | 77.4 |
| Msa0600900 | AT3G47350.1 | 28.856 | 201 | 127 | 6 | 16 | 208 | 46 | 238 | 4.55e-16 | 77.0 |
| Msa0600900 | AT2G29290.1 | 27.551 | 196 | 137 | 3 | 70 | 264 | 48 | 239 | 1.56e-14 | 71.6 |
| Msa0600900 | AT2G29350.3 | 29.082 | 196 | 133 | 4 | 70 | 264 | 35 | 225 | 2.51e-14 | 70.9 |
| Msa0600900 | AT2G29320.3 | 30.542 | 203 | 127 | 6 | 11 | 205 | 10 | 206 | 8.81e-14 | 68.9 |
| Msa0600900 | AT2G29350.2 | 29.744 | 195 | 132 | 3 | 14 | 205 | 15 | 207 | 1.28e-13 | 68.9 |
| Msa0600900 | AT3G03980.1 | 26.374 | 273 | 153 | 9 | 14 | 256 | 14 | 268 | 1.45e-12 | 66.6 |
| Msa0600900 | AT5G04900.1 | 30.366 | 191 | 125 | 3 | 20 | 202 | 83 | 273 | 1.63e-11 | 64.3 |
| Msa0600900 | AT4G20760.1 | 27.753 | 227 | 135 | 9 | 14 | 215 | 41 | 263 | 9.51e-11 | 61.6 |
| Msa0600900 | AT2G29310.4 | 29.480 | 173 | 117 | 3 | 36 | 205 | 27 | 197 | 9.55e-11 | 60.5 |
Find 73 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGAAGCTGCTTTGTATT+TGG | 0.166719 | 4_2:-43006613 | Msa0600900:CDS |
| TGCAACTTGTTTACCTTCTT+AGG | 0.212297 | 4_2:+43007814 | None:intergenic |
| GCAGCTTCAGCCACATCTTT+TGG | 0.258023 | 4_2:+43006624 | None:intergenic |
| ACCCCACTATGAATAAAATT+TGG | 0.267742 | 4_2:-43006369 | Msa0600900:three_prime_UTR |
| GTCAATCACTTCTTGAAATT+CGG | 0.305956 | 4_2:+43006962 | None:intergenic |
| GCTGAAGCTGCTTTGTATTT+GGG | 0.312530 | 4_2:-43006612 | Msa0600900:CDS |
| GATGTCTAGTTTACCGTACT+TGG | 0.364605 | 4_2:+43007046 | None:intergenic |
| ATTATGCTACCTCGTCGAAC+GGG | 0.382112 | 4_2:+43006885 | None:intergenic |
| TTTAACAACGCAGGCATAAC+CGG | 0.383105 | 4_2:-43007020 | Msa0600900:CDS |
| GGGCTCACGGTCGAAAATAA+TGG | 0.383566 | 4_2:-43006540 | Msa0600900:CDS |
| ACCCATGGCAAGCGTTCCTT+TGG | 0.387041 | 4_2:-43007847 | Msa0600900:exon |
| CTTGGAAACGGTTGTGTTCA+CGG | 0.391770 | 4_2:+43007064 | None:intergenic |
| AGGGGTTTATTCTAATCTAA+AGG | 0.394298 | 4_2:-43006661 | Msa0600900:CDS |
| AACTTGGCCGGTGTATTTCT+CGG | 0.406392 | 4_2:-43006936 | Msa0600900:CDS |
| GGGGTTTATTCTAATCTAAA+GGG | 0.410132 | 4_2:-43006660 | Msa0600900:CDS |
| AATTGATTTGCAAGGCTTGA+AGG | 0.412288 | 4_2:-43007281 | Msa0600900:intron |
| ATTAACACAGCTAGTGTTTG+TGG | 0.418206 | 4_2:-43006864 | Msa0600900:CDS |
| TTCTTTAAGCTTGATGATGA+TGG | 0.418334 | 4_2:-43006690 | Msa0600900:CDS |
| GGTCATAATCTGGTCATAGA+TGG | 0.437032 | 4_2:-43006564 | Msa0600900:CDS |
| GCAACTTGTTTACCTTCTTA+GGG | 0.438236 | 4_2:+43007815 | None:intergenic |
| TGTGTGTCACCTTATGTTGT+TGG | 0.443444 | 4_2:-43006732 | Msa0600900:CDS |
| GTATGTTAGTGGTCATAATC+TGG | 0.450617 | 4_2:-43006574 | Msa0600900:CDS |
| AGTTCAAAGCACGCCGTTGT+TGG | 0.452888 | 4_2:-43006807 | Msa0600900:CDS |
| CAGAAGATTTGTGTAACTCT+TGG | 0.459167 | 4_2:+43007135 | None:intergenic |
| AACACAACCGTTTCCAAGTA+CGG | 0.463216 | 4_2:-43007059 | Msa0600900:CDS |
| GTTCAAAGCACGCCGTTGTT+GGG | 0.466302 | 4_2:-43006806 | Msa0600900:CDS |
| TGGTTTCTGCTGCCCTAAGA+AGG | 0.468552 | 4_2:-43007827 | Msa0600900:intron |
| TTCATATAAATACTAACTCT+TGG | 0.480964 | 4_2:-43007922 | None:intergenic |
| AAAACAAAATTGTTATCTAA+AGG | 0.482178 | 4_2:+43006328 | None:intergenic |
| GATGAGTCGAAGTATGTTAG+TGG | 0.487950 | 4_2:-43006585 | Msa0600900:CDS |
| TCGGAACAAAACACGCTGCT+AGG | 0.488852 | 4_2:-43006917 | Msa0600900:CDS |
| ACAGGTGGTGCGAGCGGCAT+CGG | 0.490938 | 4_2:-43007242 | Msa0600900:CDS |
| TGTCCATTGCGACGTAAGAA+AGG | 0.497308 | 4_2:-43007105 | Msa0600900:CDS |
| ATTGATTTGCAAGGCTTGAA+GGG | 0.500137 | 4_2:-43007280 | Msa0600900:intron |
| AACGGAGTTCCAACAACATA+AGG | 0.500717 | 4_2:+43006723 | None:intergenic |
| TAGTTTACCGTACTTGGAAA+CGG | 0.502375 | 4_2:+43007052 | None:intergenic |
| AGAAGTGATTGACATTAACT+TGG | 0.509567 | 4_2:-43006952 | Msa0600900:CDS |
| TTAAAGAAATTCTTAGCTAA+CGG | 0.512477 | 4_2:+43006705 | None:intergenic |
| CTTGTAAGTTGCGTCAAAGC+TGG | 0.515413 | 4_2:-43006393 | Msa0600900:three_prime_UTR |
| AACCAAAGGAACGCTTGCCA+TGG | 0.523073 | 4_2:+43007845 | None:intergenic |
| CGGAACAAAACACGCTGCTA+GGG | 0.533738 | 4_2:-43006916 | Msa0600900:CDS |
| TCTTACGTCGCAATGGACAT+AGG | 0.535413 | 4_2:+43007109 | None:intergenic |
| GGGAAAGTAGCTCTGATCAC+AGG | 0.540590 | 4_2:-43007260 | Msa0600900:CDS |
| TTTCCTTTCTTACGTCGCAA+TGG | 0.542345 | 4_2:+43007102 | None:intergenic |
| GTGATTGACATTAACTTGGC+CGG | 0.542873 | 4_2:-43006948 | Msa0600900:CDS |
| AACGACTTGAGCTCCGTGGT+TGG | 0.548195 | 4_2:+43007196 | None:intergenic |
| AGCTGATATTCAAGATGACA+TGG | 0.557757 | 4_2:-43007171 | Msa0600900:CDS |
| GCCATCGAACTTGGACCGTA+CGG | 0.569072 | 4_2:-43006768 | Msa0600900:CDS |
| ACCAAAGGAACGCTTGCCAT+GGG | 0.575522 | 4_2:+43007846 | None:intergenic |
| CATAATCTGGTCATAGATGG+AGG | 0.576945 | 4_2:-43006561 | Msa0600900:CDS |
| AATTATGCTACCTCGTCGAA+CGG | 0.577311 | 4_2:+43006884 | None:intergenic |
| GCAAGACTCTTCTCCAACCA+CGG | 0.582010 | 4_2:-43007209 | Msa0600900:CDS |
| CTGATCACAGGTGGTGCGAG+CGG | 0.585318 | 4_2:-43007248 | Msa0600900:CDS |
| GACATCATATTTAACAACGC+AGG | 0.592835 | 4_2:-43007029 | Msa0600900:CDS |
| CATATATCTAAGTATACGTA+CGG | 0.594701 | 4_2:+43006480 | None:intergenic |
| AGTGTTTGTGGATGCATAGG+TGG | 0.595612 | 4_2:-43006852 | Msa0600900:CDS |
| ACCGTACGGTCCAAGTTCGA+TGG | 0.596833 | 4_2:+43006767 | None:intergenic |
| GGTCATAGATGGAGGGCTCA+CGG | 0.600112 | 4_2:-43006553 | Msa0600900:CDS |
| TTGTGGATGCATAGGTGGTG+TGG | 0.603697 | 4_2:-43006847 | Msa0600900:CDS |
| TTATGCTACCTCGTCGAACG+GGG | 0.611852 | 4_2:+43006886 | None:intergenic |
| TGGTGCGAGCGGCATCGGCG+AGG | 0.613425 | 4_2:-43007237 | Msa0600900:CDS |
| GCTAGTGTTTGTGGATGCAT+AGG | 0.616627 | 4_2:-43006855 | Msa0600900:CDS |
| TAATCTTATGCCAAAAGATG+TGG | 0.618201 | 4_2:-43006634 | Msa0600900:CDS |
| GGCGTGCTTTGAACTTGTGT+AGG | 0.622128 | 4_2:+43006815 | None:intergenic |
| AAAAGTGAAAAGCTCACCCA+TGG | 0.628928 | 4_2:-43007862 | Msa0600900:exon |
| ATAATCTGGTCATAGATGGA+GGG | 0.653603 | 4_2:-43006560 | Msa0600900:CDS |
| GTTGGAGAAGAGTCTTGCAG+TGG | 0.664924 | 4_2:+43007214 | None:intergenic |
| CAATTCACTCGAATACCGTA+CGG | 0.666332 | 4_2:+43006753 | None:intergenic |
| CTTAGGGCAGCAGAAACCAA+AGG | 0.669735 | 4_2:+43007831 | None:intergenic |
| AAAGTAGCTCTGATCACAGG+TGG | 0.672097 | 4_2:-43007257 | Msa0600900:CDS |
| GTAATGATCCCCGTTCGACG+AGG | 0.673490 | 4_2:-43006894 | Msa0600900:CDS |
| CTATAACGACTTGAGCTCCG+TGG | 0.687548 | 4_2:+43007192 | None:intergenic |
| GCTGATATTCAAGATGACAT+GGG | 0.689593 | 4_2:-43007170 | Msa0600900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTATTCTAATTTTTTT+TGG | - | chr4_2:43006563-43006582 | Msa0600900:CDS | 10.0% |
| !!! | GAATTATTCTAATTTTTTTT+GGG | - | chr4_2:43006564-43006583 | Msa0600900:CDS | 10.0% |
| !!! | AGAATTATTCTAATTTTTTT+TGG | - | chr4_2:43006563-43006582 | Msa0600900:CDS | 10.0% |
| !!! | GAATTATTCTAATTTTTTTT+GGG | - | chr4_2:43006564-43006583 | Msa0600900:CDS | 10.0% |
| !!! | AATTTAACTTTGATATAGTT+TGG | - | chr4_2:43006448-43006467 | Msa0600900:three_prime_UTR | 15.0% |
| !!! | ATTTAACTTTGATATAGTTT+GGG | - | chr4_2:43006449-43006468 | Msa0600900:three_prime_UTR | 15.0% |
| !!! | TTTTTTCTAATTTTTAAGCT+AGG | + | chr4_2:43006482-43006501 | None:intergenic | 15.0% |
| !!! | TATATTTTTATGTATGATTG+TGG | + | chr4_2:43006635-43006654 | None:intergenic | 15.0% |
| !!! | AAATTGATCATATTTGAAAT+AGG | + | chr4_2:43006810-43006829 | None:intergenic | 15.0% |
| !! | AAAACAAAATTGTTATCTAA+AGG | + | chr4_2:43007874-43007893 | None:intergenic | 15.0% |
| !!! | AATTTAACTTTGATATAGTT+TGG | - | chr4_2:43006448-43006467 | Msa0600900:three_prime_UTR | 15.0% |
| !!! | ATTTAACTTTGATATAGTTT+GGG | - | chr4_2:43006449-43006468 | Msa0600900:three_prime_UTR | 15.0% |
| !!! | TTTTTTCTAATTTTTAAGCT+AGG | + | chr4_2:43006482-43006501 | None:intergenic | 15.0% |
| !!! | TATATTTTTATGTATGATTG+TGG | + | chr4_2:43006635-43006654 | None:intergenic | 15.0% |
| !!! | AAATTGATCATATTTGAAAT+AGG | + | chr4_2:43006810-43006829 | None:intergenic | 15.0% |
| !! | AAAACAAAATTGTTATCTAA+AGG | + | chr4_2:43007874-43007893 | None:intergenic | 15.0% |
| !! | TTGAATTAAATTTGTGTACA+TGG | - | chr4_2:43006504-43006523 | Msa0600900:exon | 20.0% |
| !!! | AAACAACTTCTATTTTTCTT+AGG | + | chr4_2:43006741-43006760 | None:intergenic | 20.0% |
| !!! | TGTTCAAAAGTTTTTATCTT+TGG | + | chr4_2:43006833-43006852 | None:intergenic | 20.0% |
| !!! | ACTTTTGAACATAATAAGTA+CGG | - | chr4_2:43006842-43006861 | Msa0600900:CDS | 20.0% |
| !! | ACAATTAATTTCAGTTACAA+AGG | + | chr4_2:43006871-43006890 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTCTTAGCTAA+CGG | + | chr4_2:43007497-43007516 | None:intergenic | 20.0% |
| !! | TTGAATTAAATTTGTGTACA+TGG | - | chr4_2:43006504-43006523 | Msa0600900:exon | 20.0% |
| !!! | AAACAACTTCTATTTTTCTT+AGG | + | chr4_2:43006741-43006760 | None:intergenic | 20.0% |
| !!! | TGTTCAAAAGTTTTTATCTT+TGG | + | chr4_2:43006833-43006852 | None:intergenic | 20.0% |
| !!! | ACTTTTGAACATAATAAGTA+CGG | - | chr4_2:43006842-43006861 | Msa0600900:CDS | 20.0% |
| !! | ACAATTAATTTCAGTTACAA+AGG | + | chr4_2:43006871-43006890 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTCTTAGCTAA+CGG | + | chr4_2:43007497-43007516 | None:intergenic | 20.0% |
| !!! | TATTTACTCTGAAGTTTGTT+TGG | + | chr4_2:43006539-43006558 | None:intergenic | 25.0% |
| !! | ATTTTTATGTATGATTGTGG+AGG | + | chr4_2:43006632-43006651 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTTCAAGTATGT+TGG | + | chr4_2:43007216-43007235 | None:intergenic | 25.0% |
| ! | CATATATCTAAGTATACGTA+CGG | + | chr4_2:43007722-43007741 | None:intergenic | 25.0% |
| !! | TGCCAAATTTTATTCATAGT+GGG | + | chr4_2:43007835-43007854 | None:intergenic | 25.0% |
| !! | TTGCCAAATTTTATTCATAG+TGG | + | chr4_2:43007836-43007855 | None:intergenic | 25.0% |
| !!! | TATTTACTCTGAAGTTTGTT+TGG | + | chr4_2:43006539-43006558 | None:intergenic | 25.0% |
| !! | ATTTTTATGTATGATTGTGG+AGG | + | chr4_2:43006632-43006651 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTTCAAGTATGT+TGG | + | chr4_2:43007216-43007235 | None:intergenic | 25.0% |
| ! | CATATATCTAAGTATACGTA+CGG | + | chr4_2:43007722-43007741 | None:intergenic | 25.0% |
| !! | TGCCAAATTTTATTCATAGT+GGG | + | chr4_2:43007835-43007854 | None:intergenic | 25.0% |
| !! | TTGCCAAATTTTATTCATAG+TGG | + | chr4_2:43007836-43007855 | None:intergenic | 25.0% |
| AACTTTGATATAGTTTGGGT+TGG | - | chr4_2:43006453-43006472 | Msa0600900:three_prime_UTR | 30.0% | |
| ! | AGTAAAATGAGTCTAAGATG+TGG | + | chr4_2:43006663-43006682 | None:intergenic | 30.0% |
| GTCAATCACTTCTTGAAATT+CGG | + | chr4_2:43007240-43007259 | None:intergenic | 30.0% | |
| AGAAGTGATTGACATTAACT+TGG | - | chr4_2:43007247-43007266 | Msa0600900:CDS | 30.0% | |
| !! | TTCTTTAAGCTTGATGATGA+TGG | - | chr4_2:43007509-43007528 | Msa0600900:intron | 30.0% |
| !!! | TTGATGATGATGGAGTTTTA+GGG | - | chr4_2:43007519-43007538 | Msa0600900:intron | 30.0% |
| AGGGGTTTATTCTAATCTAA+AGG | - | chr4_2:43007538-43007557 | Msa0600900:intron | 30.0% | |
| GGGGTTTATTCTAATCTAAA+GGG | - | chr4_2:43007539-43007558 | Msa0600900:intron | 30.0% | |
| TAATCTTATGCCAAAAGATG+TGG | - | chr4_2:43007565-43007584 | Msa0600900:intron | 30.0% | |
| ACCCCACTATGAATAAAATT+TGG | - | chr4_2:43007830-43007849 | Msa0600900:CDS | 30.0% | |
| ! | GCCAAATTTTATTCATAGTG+GGG | + | chr4_2:43007834-43007853 | None:intergenic | 30.0% |
| AACTTTGATATAGTTTGGGT+TGG | - | chr4_2:43006453-43006472 | Msa0600900:three_prime_UTR | 30.0% | |
| ! | AGTAAAATGAGTCTAAGATG+TGG | + | chr4_2:43006663-43006682 | None:intergenic | 30.0% |
| GTCAATCACTTCTTGAAATT+CGG | + | chr4_2:43007240-43007259 | None:intergenic | 30.0% | |
| AGAAGTGATTGACATTAACT+TGG | - | chr4_2:43007247-43007266 | Msa0600900:CDS | 30.0% | |
| !! | TTCTTTAAGCTTGATGATGA+TGG | - | chr4_2:43007509-43007528 | Msa0600900:intron | 30.0% |
| !!! | TTGATGATGATGGAGTTTTA+GGG | - | chr4_2:43007519-43007538 | Msa0600900:intron | 30.0% |
| AGGGGTTTATTCTAATCTAA+AGG | - | chr4_2:43007538-43007557 | Msa0600900:intron | 30.0% | |
| GGGGTTTATTCTAATCTAAA+GGG | - | chr4_2:43007539-43007558 | Msa0600900:intron | 30.0% | |
| TAATCTTATGCCAAAAGATG+TGG | - | chr4_2:43007565-43007584 | Msa0600900:intron | 30.0% | |
| ACCCCACTATGAATAAAATT+TGG | - | chr4_2:43007830-43007849 | Msa0600900:CDS | 30.0% | |
| ! | GCCAAATTTTATTCATAGTG+GGG | + | chr4_2:43007834-43007853 | None:intergenic | 30.0% |
| ! | GCAACTTGTTTACCTTCTTA+GGG | + | chr4_2:43006387-43006406 | None:intergenic | 35.0% |
| ! | TGCAACTTGTTTACCTTCTT+AGG | + | chr4_2:43006388-43006407 | None:intergenic | 35.0% |
| GCTGCATCATCATACATAAA+AGG | + | chr4_2:43006419-43006438 | None:intergenic | 35.0% | |
| !! | TCATGCTCAATTGATTTGCA+AGG | - | chr4_2:43006910-43006929 | Msa0600900:CDS | 35.0% |
| !! | AATTGATTTGCAAGGCTTGA+AGG | - | chr4_2:43006918-43006937 | Msa0600900:CDS | 35.0% |
| !! | ATTGATTTGCAAGGCTTGAA+GGG | - | chr4_2:43006919-43006938 | Msa0600900:CDS | 35.0% |
| AGCTGATATTCAAGATGACA+TGG | - | chr4_2:43007028-43007047 | Msa0600900:CDS | 35.0% | |
| GCTGATATTCAAGATGACAT+GGG | - | chr4_2:43007029-43007048 | Msa0600900:CDS | 35.0% | |
| CAGAAGATTTGTGTAACTCT+TGG | + | chr4_2:43007067-43007086 | None:intergenic | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_2:43007150-43007169 | None:intergenic | 35.0% | |
| GACATCATATTTAACAACGC+AGG | - | chr4_2:43007170-43007189 | Msa0600900:CDS | 35.0% | |
| !!! | TATGTTGGTTTTGTTTACGC+CGG | + | chr4_2:43007201-43007220 | None:intergenic | 35.0% |
| ! | TTTTGTTCCGAGAAATACAC+CGG | + | chr4_2:43007273-43007292 | None:intergenic | 35.0% |
| ATTAACACAGCTAGTGTTTG+TGG | - | chr4_2:43007335-43007354 | Msa0600900:intron | 35.0% | |
| ! | GTTTTTCATTAGCCCAACAA+CGG | + | chr4_2:43007408-43007427 | None:intergenic | 35.0% |
| !!! | CTTGATGATGATGGAGTTTT+AGG | - | chr4_2:43007518-43007537 | Msa0600900:intron | 35.0% |
| !!! | TGATGATGATGGAGTTTTAG+GGG | - | chr4_2:43007520-43007539 | Msa0600900:intron | 35.0% |
| GTATGTTAGTGGTCATAATC+TGG | - | chr4_2:43007625-43007644 | Msa0600900:intron | 35.0% | |
| ATAATCTGGTCATAGATGGA+GGG | - | chr4_2:43007639-43007658 | Msa0600900:intron | 35.0% | |
| ! | GCAACTTGTTTACCTTCTTA+GGG | + | chr4_2:43006387-43006406 | None:intergenic | 35.0% |
| ! | TGCAACTTGTTTACCTTCTT+AGG | + | chr4_2:43006388-43006407 | None:intergenic | 35.0% |
| GCTGCATCATCATACATAAA+AGG | + | chr4_2:43006419-43006438 | None:intergenic | 35.0% | |
| !! | TCATGCTCAATTGATTTGCA+AGG | - | chr4_2:43006910-43006929 | Msa0600900:CDS | 35.0% |
| !! | AATTGATTTGCAAGGCTTGA+AGG | - | chr4_2:43006918-43006937 | Msa0600900:CDS | 35.0% |
| !! | ATTGATTTGCAAGGCTTGAA+GGG | - | chr4_2:43006919-43006938 | Msa0600900:CDS | 35.0% |
| AGCTGATATTCAAGATGACA+TGG | - | chr4_2:43007028-43007047 | Msa0600900:CDS | 35.0% | |
| GCTGATATTCAAGATGACAT+GGG | - | chr4_2:43007029-43007048 | Msa0600900:CDS | 35.0% | |
| CAGAAGATTTGTGTAACTCT+TGG | + | chr4_2:43007067-43007086 | None:intergenic | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_2:43007150-43007169 | None:intergenic | 35.0% | |
| GACATCATATTTAACAACGC+AGG | - | chr4_2:43007170-43007189 | Msa0600900:CDS | 35.0% | |
| !!! | TATGTTGGTTTTGTTTACGC+CGG | + | chr4_2:43007201-43007220 | None:intergenic | 35.0% |
| ! | TTTTGTTCCGAGAAATACAC+CGG | + | chr4_2:43007273-43007292 | None:intergenic | 35.0% |
| ATTAACACAGCTAGTGTTTG+TGG | - | chr4_2:43007335-43007354 | Msa0600900:intron | 35.0% | |
| ! | GTTTTTCATTAGCCCAACAA+CGG | + | chr4_2:43007408-43007427 | None:intergenic | 35.0% |
| !!! | CTTGATGATGATGGAGTTTT+AGG | - | chr4_2:43007518-43007537 | Msa0600900:intron | 35.0% |
| !!! | TGATGATGATGGAGTTTTAG+GGG | - | chr4_2:43007520-43007539 | Msa0600900:intron | 35.0% |
| GTATGTTAGTGGTCATAATC+TGG | - | chr4_2:43007625-43007644 | Msa0600900:intron | 35.0% | |
| ATAATCTGGTCATAGATGGA+GGG | - | chr4_2:43007639-43007658 | Msa0600900:intron | 35.0% | |
| AAAAGTGAAAAGCTCACCCA+TGG | - | chr4_2:43006337-43006356 | Msa0600900:three_prime_UTR | 40.0% | |
| TTTCCTTTCTTACGTCGCAA+TGG | + | chr4_2:43007100-43007119 | None:intergenic | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_2:43007140-43007159 | Msa0600900:CDS | 40.0% | |
| ! | GATGTCTAGTTTACCGTACT+TGG | + | chr4_2:43007156-43007175 | None:intergenic | 40.0% |
| TTTAACAACGCAGGCATAAC+CGG | - | chr4_2:43007179-43007198 | Msa0600900:CDS | 40.0% | |
| ! | GTGATTGACATTAACTTGGC+CGG | - | chr4_2:43007251-43007270 | Msa0600900:CDS | 40.0% |
| AATTATGCTACCTCGTCGAA+CGG | + | chr4_2:43007318-43007337 | None:intergenic | 40.0% | |
| AAAAACACAGCCATCGAACT+TGG | - | chr4_2:43007422-43007441 | Msa0600900:intron | 40.0% | |
| CAATTCACTCGAATACCGTA+CGG | + | chr4_2:43007449-43007468 | None:intergenic | 40.0% | |
| TGTGTGTCACCTTATGTTGT+TGG | - | chr4_2:43007467-43007486 | Msa0600900:intron | 40.0% | |
| AACGGAGTTCCAACAACATA+AGG | + | chr4_2:43007479-43007498 | None:intergenic | 40.0% | |
| ! | GCTGAAGCTGCTTTGTATTT+GGG | - | chr4_2:43007587-43007606 | Msa0600900:intron | 40.0% |
| GATGAGTCGAAGTATGTTAG+TGG | - | chr4_2:43007614-43007633 | Msa0600900:intron | 40.0% | |
| GGTCATAATCTGGTCATAGA+TGG | - | chr4_2:43007635-43007654 | Msa0600900:intron | 40.0% | |
| CATAATCTGGTCATAGATGG+AGG | - | chr4_2:43007638-43007657 | Msa0600900:intron | 40.0% | |
| AAAAGTGAAAAGCTCACCCA+TGG | - | chr4_2:43006337-43006356 | Msa0600900:three_prime_UTR | 40.0% | |
| TTTCCTTTCTTACGTCGCAA+TGG | + | chr4_2:43007100-43007119 | None:intergenic | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_2:43007140-43007159 | Msa0600900:CDS | 40.0% | |
| ! | GATGTCTAGTTTACCGTACT+TGG | + | chr4_2:43007156-43007175 | None:intergenic | 40.0% |
| TTTAACAACGCAGGCATAAC+CGG | - | chr4_2:43007179-43007198 | Msa0600900:CDS | 40.0% | |
| ! | GTGATTGACATTAACTTGGC+CGG | - | chr4_2:43007251-43007270 | Msa0600900:CDS | 40.0% |
| AATTATGCTACCTCGTCGAA+CGG | + | chr4_2:43007318-43007337 | None:intergenic | 40.0% | |
| AAAAACACAGCCATCGAACT+TGG | - | chr4_2:43007422-43007441 | Msa0600900:intron | 40.0% | |
| CAATTCACTCGAATACCGTA+CGG | + | chr4_2:43007449-43007468 | None:intergenic | 40.0% | |
| TGTGTGTCACCTTATGTTGT+TGG | - | chr4_2:43007467-43007486 | Msa0600900:intron | 40.0% | |
| AACGGAGTTCCAACAACATA+AGG | + | chr4_2:43007479-43007498 | None:intergenic | 40.0% | |
| ! | GCTGAAGCTGCTTTGTATTT+GGG | - | chr4_2:43007587-43007606 | Msa0600900:intron | 40.0% |
| GATGAGTCGAAGTATGTTAG+TGG | - | chr4_2:43007614-43007633 | Msa0600900:intron | 40.0% | |
| GGTCATAATCTGGTCATAGA+TGG | - | chr4_2:43007635-43007654 | Msa0600900:intron | 40.0% | |
| CATAATCTGGTCATAGATGG+AGG | - | chr4_2:43007638-43007657 | Msa0600900:intron | 40.0% | |
| !! | AAAGTAGCTCTGATCACAGG+TGG | - | chr4_2:43006942-43006961 | Msa0600900:CDS | 45.0% |
| TCTTACGTCGCAATGGACAT+AGG | + | chr4_2:43007093-43007112 | None:intergenic | 45.0% | |
| TGTCCATTGCGACGTAAGAA+AGG | - | chr4_2:43007094-43007113 | Msa0600900:CDS | 45.0% | |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_2:43007138-43007157 | None:intergenic | 45.0% | |
| AACTTGGCCGGTGTATTTCT+CGG | - | chr4_2:43007263-43007282 | Msa0600900:CDS | 45.0% | |
| ATTATGCTACCTCGTCGAAC+GGG | + | chr4_2:43007317-43007336 | None:intergenic | 45.0% | |
| GCTAGTGTTTGTGGATGCAT+AGG | - | chr4_2:43007344-43007363 | Msa0600900:intron | 45.0% | |
| AGTGTTTGTGGATGCATAGG+TGG | - | chr4_2:43007347-43007366 | Msa0600900:intron | 45.0% | |
| ! | GGCTGAAGCTGCTTTGTATT+TGG | - | chr4_2:43007586-43007605 | Msa0600900:intron | 45.0% |
| CTTGTAAGTTGCGTCAAAGC+TGG | - | chr4_2:43007806-43007825 | Msa0600900:intron | 45.0% | |
| !! | AAAGTAGCTCTGATCACAGG+TGG | - | chr4_2:43006942-43006961 | Msa0600900:CDS | 45.0% |
| TCTTACGTCGCAATGGACAT+AGG | + | chr4_2:43007093-43007112 | None:intergenic | 45.0% | |
| TGTCCATTGCGACGTAAGAA+AGG | - | chr4_2:43007094-43007113 | Msa0600900:CDS | 45.0% | |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_2:43007138-43007157 | None:intergenic | 45.0% | |
| AACTTGGCCGGTGTATTTCT+CGG | - | chr4_2:43007263-43007282 | Msa0600900:CDS | 45.0% | |
| ATTATGCTACCTCGTCGAAC+GGG | + | chr4_2:43007317-43007336 | None:intergenic | 45.0% | |
| GCTAGTGTTTGTGGATGCAT+AGG | - | chr4_2:43007344-43007363 | Msa0600900:intron | 45.0% | |
| AGTGTTTGTGGATGCATAGG+TGG | - | chr4_2:43007347-43007366 | Msa0600900:intron | 45.0% | |
| ! | GGCTGAAGCTGCTTTGTATT+TGG | - | chr4_2:43007586-43007605 | Msa0600900:intron | 45.0% |
| CTTGTAAGTTGCGTCAAAGC+TGG | - | chr4_2:43007806-43007825 | Msa0600900:intron | 45.0% | |
| !!! | ATTGTTTTTTTTTTTTTTAA+AGG | - | chr4_2:43007757-43007776 | Msa0600900:intron | 5.0% |
| !!! | ATTGTTTTTTTTTTTTTTAA+AGG | - | chr4_2:43007757-43007776 | Msa0600900:intron | 5.0% |
| ACCAAAGGAACGCTTGCCAT+GGG | + | chr4_2:43006356-43006375 | None:intergenic | 50.0% | |
| AACCAAAGGAACGCTTGCCA+TGG | + | chr4_2:43006357-43006376 | None:intergenic | 50.0% | |
| CTTAGGGCAGCAGAAACCAA+AGG | + | chr4_2:43006371-43006390 | None:intergenic | 50.0% | |
| TGGTTTCTGCTGCCCTAAGA+AGG | - | chr4_2:43006372-43006391 | Msa0600900:three_prime_UTR | 50.0% | |
| !! | GGGAAAGTAGCTCTGATCAC+AGG | - | chr4_2:43006939-43006958 | Msa0600900:CDS | 50.0% |
| GTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_2:43006988-43007007 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAACCA+CGG | - | chr4_2:43006990-43007009 | Msa0600900:CDS | 50.0% | |
| CTATAACGACTTGAGCTCCG+TGG | + | chr4_2:43007010-43007029 | None:intergenic | 50.0% | |
| TCGGAACAAAACACGCTGCT+AGG | - | chr4_2:43007282-43007301 | Msa0600900:intron | 50.0% | |
| CGGAACAAAACACGCTGCTA+GGG | - | chr4_2:43007283-43007302 | Msa0600900:intron | 50.0% | |
| TTATGCTACCTCGTCGAACG+GGG | + | chr4_2:43007316-43007335 | None:intergenic | 50.0% | |
| TTGTGGATGCATAGGTGGTG+TGG | - | chr4_2:43007352-43007371 | Msa0600900:intron | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_2:43007387-43007406 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+TGG | - | chr4_2:43007392-43007411 | Msa0600900:intron | 50.0% | |
| GTTCAAAGCACGCCGTTGTT+GGG | - | chr4_2:43007393-43007412 | Msa0600900:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_2:43007578-43007597 | None:intergenic | 50.0% |
| GGGCTCACGGTCGAAAATAA+TGG | - | chr4_2:43007659-43007678 | Msa0600900:intron | 50.0% | |
| ACCAAAGGAACGCTTGCCAT+GGG | + | chr4_2:43006356-43006375 | None:intergenic | 50.0% | |
| AACCAAAGGAACGCTTGCCA+TGG | + | chr4_2:43006357-43006376 | None:intergenic | 50.0% | |
| CTTAGGGCAGCAGAAACCAA+AGG | + | chr4_2:43006371-43006390 | None:intergenic | 50.0% | |
| TGGTTTCTGCTGCCCTAAGA+AGG | - | chr4_2:43006372-43006391 | Msa0600900:three_prime_UTR | 50.0% | |
| !! | GGGAAAGTAGCTCTGATCAC+AGG | - | chr4_2:43006939-43006958 | Msa0600900:CDS | 50.0% |
| GTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_2:43006988-43007007 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAACCA+CGG | - | chr4_2:43006990-43007009 | Msa0600900:CDS | 50.0% | |
| CTATAACGACTTGAGCTCCG+TGG | + | chr4_2:43007010-43007029 | None:intergenic | 50.0% | |
| TCGGAACAAAACACGCTGCT+AGG | - | chr4_2:43007282-43007301 | Msa0600900:intron | 50.0% | |
| CGGAACAAAACACGCTGCTA+GGG | - | chr4_2:43007283-43007302 | Msa0600900:intron | 50.0% | |
| TTATGCTACCTCGTCGAACG+GGG | + | chr4_2:43007316-43007335 | None:intergenic | 50.0% | |
| TTGTGGATGCATAGGTGGTG+TGG | - | chr4_2:43007352-43007371 | Msa0600900:intron | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_2:43007387-43007406 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+TGG | - | chr4_2:43007392-43007411 | Msa0600900:intron | 50.0% | |
| GTTCAAAGCACGCCGTTGTT+GGG | - | chr4_2:43007393-43007412 | Msa0600900:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_2:43007578-43007597 | None:intergenic | 50.0% |
| GGGCTCACGGTCGAAAATAA+TGG | - | chr4_2:43007659-43007678 | Msa0600900:intron | 50.0% | |
| ACCCATGGCAAGCGTTCCTT+TGG | - | chr4_2:43006352-43006371 | Msa0600900:three_prime_UTR | 55.0% | |
| AACGACTTGAGCTCCGTGGT+TGG | + | chr4_2:43007006-43007025 | None:intergenic | 55.0% | |
| GTAATGATCCCCGTTCGACG+AGG | - | chr4_2:43007305-43007324 | Msa0600900:intron | 55.0% | |
| GCCATCGAACTTGGACCGTA+CGG | - | chr4_2:43007431-43007450 | Msa0600900:intron | 55.0% | |
| ACCGTACGGTCCAAGTTCGA+TGG | + | chr4_2:43007435-43007454 | None:intergenic | 55.0% | |
| GGTCATAGATGGAGGGCTCA+CGG | - | chr4_2:43007646-43007665 | Msa0600900:intron | 55.0% | |
| ACCCATGGCAAGCGTTCCTT+TGG | - | chr4_2:43006352-43006371 | Msa0600900:three_prime_UTR | 55.0% | |
| AACGACTTGAGCTCCGTGGT+TGG | + | chr4_2:43007006-43007025 | None:intergenic | 55.0% | |
| GTAATGATCCCCGTTCGACG+AGG | - | chr4_2:43007305-43007324 | Msa0600900:intron | 55.0% | |
| GCCATCGAACTTGGACCGTA+CGG | - | chr4_2:43007431-43007450 | Msa0600900:intron | 55.0% | |
| ACCGTACGGTCCAAGTTCGA+TGG | + | chr4_2:43007435-43007454 | None:intergenic | 55.0% | |
| GGTCATAGATGGAGGGCTCA+CGG | - | chr4_2:43007646-43007665 | Msa0600900:intron | 55.0% | |
| CTGATCACAGGTGGTGCGAG+CGG | - | chr4_2:43006951-43006970 | Msa0600900:CDS | 60.0% | |
| CTGATCACAGGTGGTGCGAG+CGG | - | chr4_2:43006951-43006970 | Msa0600900:CDS | 60.0% | |
| ACAGGTGGTGCGAGCGGCAT+CGG | - | chr4_2:43006957-43006976 | Msa0600900:CDS | 65.0% | |
| ACAGGTGGTGCGAGCGGCAT+CGG | - | chr4_2:43006957-43006976 | Msa0600900:CDS | 65.0% | |
| !! | TGGTGCGAGCGGCATCGGCG+AGG | - | chr4_2:43006962-43006981 | Msa0600900:CDS | 75.0% |
| !! | TGGTGCGAGCGGCATCGGCG+AGG | - | chr4_2:43006962-43006981 | Msa0600900:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 43006283 | 43007938 | 43006283 | ID=Msa0600900;Name=Msa0600900 |
| chr4_2 | mRNA | 43006283 | 43007938 | 43006283 | ID=Msa0600900-mRNA-1;Parent=Msa0600900;Name=Msa0600900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=73|1|1|1|1|1|2|229|271 |
| chr4_2 | exon | 43006283 | 43007289 | 43006283 | ID=Msa0600900-mRNA-1:exon:9393;Parent=Msa0600900-mRNA-1 |
| chr4_2 | exon | 43007828 | 43007938 | 43007828 | ID=Msa0600900-mRNA-1:exon:9392;Parent=Msa0600900-mRNA-1 |
| chr4_2 | five_prime_UTR | 43007866 | 43007938 | 43007866 | ID=Msa0600900-mRNA-1:five_prime_utr;Parent=Msa0600900-mRNA-1 |
| chr4_2 | CDS | 43007828 | 43007865 | 43007828 | ID=Msa0600900-mRNA-1:cds;Parent=Msa0600900-mRNA-1 |
| chr4_2 | CDS | 43006512 | 43007289 | 43006512 | ID=Msa0600900-mRNA-1:cds;Parent=Msa0600900-mRNA-1 |
| chr4_2 | three_prime_UTR | 43006283 | 43006511 | 43006283 | ID=Msa0600900-mRNA-1:three_prime_utr;Parent=Msa0600900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
