Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601840 | KEH30032.1 | 85.271 | 387 | 23 | 3 | 2 | 354 | 16 | 402 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601840 | sp|Q6DBP8|GAT11_ARATH | 36.333 | 300 | 160 | 11 | 49 | 336 | 10 | 290 | 4.05e-46 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601840 | A0A072UK09 | 85.271 | 387 | 23 | 3 | 2 | 354 | 16 | 402 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0601840 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0601840 | Msa0682650 | 0.813042 | 3.126171e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601840 | MtrunA17_Chr4g0028961 | 93.125 | 320 | 15 | 1 | 42 | 354 | 1 | 320 | 0.0 | 580 |
| Msa0601840 | MtrunA17_Chr2g0326771 | 54.921 | 315 | 125 | 6 | 38 | 352 | 4 | 301 | 4.32e-103 | 306 |
| Msa0601840 | MtrunA17_Chr1g0199671 | 64.894 | 94 | 28 | 1 | 262 | 350 | 238 | 331 | 6.78e-36 | 133 |
| Msa0601840 | MtrunA17_Chr1g0213161 | 78.462 | 65 | 14 | 0 | 266 | 330 | 152 | 216 | 1.79e-33 | 124 |
| Msa0601840 | MtrunA17_Chr1g0169431 | 72.222 | 72 | 20 | 0 | 266 | 337 | 172 | 243 | 4.64e-32 | 120 |
| Msa0601840 | MtrunA17_Chr4g0035891 | 72.059 | 68 | 19 | 0 | 265 | 332 | 210 | 277 | 5.82e-32 | 121 |
| Msa0601840 | MtrunA17_Chr3g0145121 | 69.444 | 72 | 22 | 0 | 261 | 332 | 210 | 281 | 1.85e-31 | 120 |
| Msa0601840 | MtrunA17_Chr6g0461591 | 58.333 | 96 | 40 | 0 | 235 | 330 | 161 | 256 | 4.83e-31 | 118 |
| Msa0601840 | MtrunA17_Chr8g0372291 | 68.000 | 75 | 22 | 1 | 266 | 340 | 218 | 290 | 5.80e-31 | 119 |
| Msa0601840 | MtrunA17_Chr5g0395391 | 66.279 | 86 | 28 | 1 | 247 | 332 | 252 | 336 | 6.83e-31 | 119 |
| Msa0601840 | MtrunA17_Chr5g0395391 | 63.750 | 80 | 29 | 0 | 250 | 329 | 152 | 231 | 1.58e-27 | 110 |
| Msa0601840 | MtrunA17_Chr7g0253101 | 71.831 | 71 | 20 | 0 | 263 | 333 | 185 | 255 | 9.32e-31 | 117 |
| Msa0601840 | MtrunA17_Chr1g0146231 | 73.134 | 67 | 18 | 0 | 266 | 332 | 234 | 300 | 1.02e-30 | 119 |
| Msa0601840 | MtrunA17_Chr8g0340401 | 64.198 | 81 | 29 | 0 | 252 | 332 | 212 | 292 | 3.22e-30 | 118 |
| Msa0601840 | MtrunA17_Chr5g0404981 | 68.000 | 75 | 22 | 1 | 266 | 340 | 300 | 372 | 3.41e-30 | 119 |
| Msa0601840 | MtrunA17_Chr3g0140331 | 73.134 | 67 | 18 | 0 | 266 | 332 | 253 | 319 | 4.11e-29 | 115 |
| Msa0601840 | MtrunA17_Chr7g0232671 | 35.374 | 147 | 86 | 1 | 181 | 327 | 111 | 248 | 9.09e-23 | 95.9 |
| Msa0601840 | MtrunA17_Chr7g0232701 | 53.247 | 77 | 36 | 0 | 251 | 327 | 58 | 134 | 1.30e-22 | 92.0 |
| Msa0601840 | MtrunA17_Chr7g0232681 | 51.948 | 77 | 37 | 0 | 251 | 327 | 117 | 193 | 1.22e-21 | 91.3 |
| Msa0601840 | MtrunA17_Chr5g0404131 | 34.940 | 83 | 48 | 2 | 220 | 298 | 144 | 224 | 7.65e-12 | 65.5 |
| Msa0601840 | MtrunA17_Chr7g0271861 | 57.500 | 40 | 17 | 0 | 262 | 301 | 18 | 57 | 5.11e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601840 | AT1G08010.2 | 36.333 | 300 | 160 | 11 | 49 | 336 | 10 | 290 | 4.11e-47 | 162 |
| Msa0601840 | AT1G08010.1 | 36.333 | 300 | 160 | 11 | 49 | 336 | 10 | 290 | 4.11e-47 | 162 |
| Msa0601840 | AT1G08010.3 | 36.333 | 300 | 160 | 11 | 49 | 336 | 10 | 290 | 4.11e-47 | 162 |
| Msa0601840 | AT1G08000.2 | 35.959 | 292 | 168 | 7 | 49 | 335 | 10 | 287 | 6.79e-44 | 154 |
| Msa0601840 | AT1G08000.1 | 35.959 | 292 | 168 | 7 | 49 | 335 | 10 | 287 | 6.79e-44 | 154 |
| Msa0601840 | AT2G28340.1 | 33.673 | 294 | 154 | 8 | 46 | 336 | 6 | 261 | 1.06e-35 | 132 |
| Msa0601840 | AT3G54810.1 | 77.778 | 72 | 16 | 0 | 261 | 332 | 224 | 295 | 3.55e-34 | 128 |
| Msa0601840 | AT3G54810.2 | 77.778 | 72 | 16 | 0 | 261 | 332 | 224 | 295 | 3.55e-34 | 128 |
| Msa0601840 | AT3G24050.1 | 71.429 | 70 | 20 | 0 | 263 | 332 | 191 | 260 | 4.46e-31 | 119 |
| Msa0601840 | AT4G32890.1 | 68.056 | 72 | 23 | 0 | 261 | 332 | 192 | 263 | 1.44e-30 | 118 |
| Msa0601840 | AT3G60530.1 | 69.014 | 71 | 22 | 0 | 266 | 336 | 158 | 228 | 1.76e-30 | 116 |
| Msa0601840 | AT4G36240.1 | 45.000 | 140 | 58 | 4 | 191 | 330 | 108 | 228 | 2.57e-30 | 116 |
| Msa0601840 | AT5G25830.1 | 71.642 | 67 | 19 | 0 | 266 | 332 | 219 | 285 | 5.77e-30 | 117 |
| Msa0601840 | AT5G66320.2 | 70.588 | 68 | 20 | 0 | 265 | 332 | 248 | 315 | 1.00e-29 | 117 |
| Msa0601840 | AT5G66320.1 | 70.588 | 68 | 20 | 0 | 265 | 332 | 248 | 315 | 1.00e-29 | 117 |
| Msa0601840 | AT2G45050.1 | 53.000 | 100 | 44 | 1 | 236 | 332 | 146 | 245 | 1.97e-29 | 114 |
| Msa0601840 | AT3G51080.1 | 65.789 | 76 | 24 | 1 | 266 | 341 | 221 | 294 | 3.12e-29 | 115 |
| Msa0601840 | AT4G34680.1 | 60.976 | 82 | 30 | 1 | 263 | 342 | 177 | 258 | 4.16e-29 | 113 |
| Msa0601840 | AT4G34680.2 | 60.976 | 82 | 30 | 1 | 263 | 342 | 177 | 258 | 4.16e-29 | 113 |
| Msa0601840 | AT3G45170.1 | 62.857 | 70 | 26 | 0 | 263 | 332 | 112 | 181 | 5.74e-28 | 108 |
| Msa0601840 | AT2G18380.1 | 54.545 | 44 | 19 | 1 | 255 | 298 | 82 | 124 | 4.30e-11 | 62.4 |
Find 76 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATTGAAGGAGACATTT+TGG | 0.217499 | 4_2:-44898148 | None:intergenic |
| TATTTATCATCAAACCTTTC+AGG | 0.244075 | 4_2:+44898725 | Msa0601840:CDS |
| CAAGCATTGCATAGGGTCTT+AGG | 0.290975 | 4_2:-44898548 | None:intergenic |
| CTAGCTGCAGGCCGATATTC+AGG | 0.293194 | 4_2:-44898602 | None:intergenic |
| GTTAATCAGGAGACTGTTAA+AGG | 0.309270 | 4_2:+44898689 | Msa0601840:CDS |
| ATACATTTATGTTAAGAGTT+AGG | 0.325216 | 4_2:+44895190 | None:intergenic |
| CAGGCCGATATTCAGGAAAT+AGG | 0.331499 | 4_2:-44898595 | None:intergenic |
| GGTCTTGGAAATCAGGAAAA+AGG | 0.338584 | 4_2:+44898667 | Msa0601840:CDS |
| ACAAGAAGGTCTTGGAAATC+AGG | 0.346966 | 4_2:+44898660 | Msa0601840:CDS |
| CTGAAACTGGGCTGTAGGTT+TGG | 0.363478 | 4_2:-44898187 | None:intergenic |
| GTCGCCTATTTCCTGAATAT+CGG | 0.393892 | 4_2:+44898591 | Msa0601840:CDS |
| GCGTAAATTTGTTCCATTGA+AGG | 0.400336 | 4_2:-44898159 | None:intergenic |
| TGGGAGATATTGTCTTTCCT+TGG | 0.402736 | 4_2:-44898410 | None:intergenic |
| TACCACGAGGACGCTTTGTC+GGG | 0.437518 | 4_2:-44898268 | None:intergenic |
| AAATTCTCACAAGAAGGTCT+TGG | 0.447787 | 4_2:+44898652 | Msa0601840:CDS |
| TGATGAGATAACGCAGTTGA+TGG | 0.448971 | 4_2:-44895236 | None:intergenic |
| TGCACTGATGCTTCAAAGGT+TGG | 0.449929 | 4_2:-44898626 | None:intergenic |
| TCAAAGGTTGGGCTAGCTGC+AGG | 0.450155 | 4_2:-44898614 | None:intergenic |
| AGAGAAATTAACGGCGGTGG+TGG | 0.457188 | 4_2:-44895273 | None:intergenic |
| GGCGCCTCTCAAGCTTCGAC+AGG | 0.458075 | 4_2:+44898297 | Msa0601840:CDS |
| ATCCAAAATGTCTCCTTCAA+TGG | 0.458572 | 4_2:+44898146 | Msa0601840:CDS |
| ATGCTTGTGGAGTTCGATAC+AGG | 0.460657 | 4_2:+44898564 | Msa0601840:CDS |
| CATAGGGTCTTAGGACCCTT+AGG | 0.477379 | 4_2:-44898539 | None:intergenic |
| TCTCAATGCTATTAGAGAGC+TGG | 0.477442 | 4_2:-44898430 | None:intergenic |
| GGACGCTTTGTCGGGATCAC+TGG | 0.489854 | 4_2:-44898260 | None:intergenic |
| CACCAAGAGATGGTTCTTCA+AGG | 0.491420 | 4_2:-44896369 | None:intergenic |
| GGAAACTGATGGTGTGGAAC+AGG | 0.492036 | 4_2:+44896324 | Msa0601840:CDS |
| CTCAATGCTATTAGAGAGCT+GGG | 0.500421 | 4_2:-44898429 | None:intergenic |
| AAGACTGCTGGACCTGCATA+TGG | 0.501903 | 4_2:+44898110 | Msa0601840:CDS |
| TTACCACGAGGACGCTTTGT+CGG | 0.503422 | 4_2:-44898269 | None:intergenic |
| CACCTTGAAGAACCATCTCT+TGG | 0.504280 | 4_2:+44896367 | Msa0601840:CDS |
| GCACTGATGCTTCAAAGGTT+GGG | 0.507344 | 4_2:-44898625 | None:intergenic |
| CGACAATGATATTCCGTGCC+TGG | 0.508479 | 4_2:+44898949 | Msa0601840:three_prime_UTR |
| CACATTCATGTTACCAGGCA+CGG | 0.511978 | 4_2:-44898962 | None:intergenic |
| CAATGGAGAGAGGGGCCTAA+GGG | 0.517972 | 4_2:+44898524 | Msa0601840:CDS |
| CTGCTAATATGAAGAACAGC+TGG | 0.521475 | 4_2:+44896218 | Msa0601840:CDS |
| AAACAGCTTGGAAAGACTGC+TGG | 0.521813 | 4_2:+44898098 | Msa0601840:intron |
| TGTGGAGTTCGATACAGGTC+TGG | 0.526380 | 4_2:+44898569 | Msa0601840:CDS |
| ACAATGGAGAGAGGGGCCTA+AGG | 0.527062 | 4_2:+44898523 | Msa0601840:CDS |
| TGAAAGCAGTAGTTATTCCT+CGG | 0.529501 | 4_2:+44898214 | Msa0601840:CDS |
| GGTGTGTCGGATGAGATTCT+TGG | 0.532775 | 4_2:+44896262 | Msa0601840:CDS |
| AAACCTTTCAGGAATTCTCT+AGG | 0.536952 | 4_2:+44898736 | Msa0601840:CDS |
| CTGATGGTGTGGAACAGGAT+TGG | 0.558249 | 4_2:+44896329 | Msa0601840:CDS |
| GAACTCCACAAGCATTGCAT+AGG | 0.559486 | 4_2:-44898556 | None:intergenic |
| TGAAACGCCACAATGGAGAG+AGG | 0.562131 | 4_2:+44898514 | Msa0601840:CDS |
| GCACTCAAATTCTCACAAGA+AGG | 0.564610 | 4_2:+44898646 | Msa0601840:CDS |
| TGAGTGCACTGATGCTTCAA+AGG | 0.568513 | 4_2:-44898630 | None:intergenic |
| CAATCGGATAAACAGCGTGC+TGG | 0.568743 | 4_2:+44898359 | Msa0601840:CDS |
| TGTCGAAGCTTGAGAGGCGC+CGG | 0.571004 | 4_2:-44898295 | None:intergenic |
| TAGAAAATGTACGCATTGCG+AGG | 0.571149 | 4_2:+44898487 | Msa0601840:CDS |
| AGAGCCTGTCGAAGCTTGAG+AGG | 0.571997 | 4_2:-44898301 | None:intergenic |
| GTGTGAGTGTTGTAAACCCT+CGG | 0.576833 | 4_2:-44898865 | None:intergenic |
| AAAAGAGAAATTAACGGCGG+TGG | 0.586011 | 4_2:-44895276 | None:intergenic |
| TCAGTTTCCACATCTTCAAG+TGG | 0.590091 | 4_2:-44896310 | None:intergenic |
| AACTCCACAAGCATTGCATA+GGG | 0.590903 | 4_2:-44898555 | None:intergenic |
| TATCCTAGAGAATTCCTGAA+AGG | 0.593357 | 4_2:-44898739 | None:intergenic |
| GGAATCGAACTCGGTATCCG+AGG | 0.593873 | 4_2:+44898848 | Msa0601840:three_prime_UTR |
| AAGACCCTATGCAATGCTTG+TGG | 0.595397 | 4_2:+44898551 | Msa0601840:CDS |
| CTATAAGTAGGAATCGAACT+CGG | 0.601877 | 4_2:+44898839 | Msa0601840:three_prime_UTR |
| TTAGGCCCCTCTCTCCATTG+TGG | 0.615985 | 4_2:-44898521 | None:intergenic |
| GAAACGCCACAATGGAGAGA+GGG | 0.617261 | 4_2:+44898515 | Msa0601840:CDS |
| TCGCCGCGTAGCTCAAATGC+CGG | 0.621988 | 4_2:-44896403 | None:intergenic |
| AGCGTCCTCGTGGTAAACGC+CGG | 0.626063 | 4_2:+44898276 | Msa0601840:CDS |
| GAATCGAACTCGGTATCCGA+GGG | 0.632752 | 4_2:+44898849 | Msa0601840:three_prime_UTR |
| CTTGAAGATGTGGAAACTGA+TGG | 0.650171 | 4_2:+44896313 | Msa0601840:CDS |
| ACTGAGAAAACACCAAGAGA+TGG | 0.656666 | 4_2:-44896379 | None:intergenic |
| AAAGTTGTAATTCTCAACCG+AGG | 0.667884 | 4_2:-44898231 | None:intergenic |
| ATCCCGACAAAGCGTCCTCG+TGG | 0.667975 | 4_2:+44898266 | Msa0601840:CDS |
| AGATGTGGAAACTGATGGTG+TGG | 0.668716 | 4_2:+44896318 | Msa0601840:CDS |
| GTTTGATGATAAATACAACA+TGG | 0.669284 | 4_2:-44898717 | None:intergenic |
| AAACGCCACAATGGAGAGAG+GGG | 0.674715 | 4_2:+44898516 | Msa0601840:CDS |
| TTCAATGGAACAAATTTACG+CGG | 0.676345 | 4_2:+44898161 | Msa0601840:CDS |
| AGGTAACTGAAACGCCACAA+TGG | 0.680689 | 4_2:+44898507 | Msa0601840:CDS |
| AGGCGCCGGCGTTTACCACG+AGG | 0.716581 | 4_2:-44898281 | None:intergenic |
| GTACCGGCATTTGAGCTACG+CGG | 0.750665 | 4_2:+44896400 | Msa0601840:CDS |
| TCAAGCTTAAAAGATCGACG+AGG | 0.787048 | 4_2:+44896859 | Msa0601840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTTTTTTAAAATAA+GGG | + | chr4_2:44897735-44897754 | Msa0601840:intron | 0.0% |
| !! | TGTTATATTTATATACTTTA+AGG | + | chr4_2:44896057-44896076 | Msa0601840:intron | 10.0% |
| !! | GTTATATTTATATACTTTAA+GGG | + | chr4_2:44896058-44896077 | Msa0601840:intron | 10.0% |
| !! | AAATGAAAAAGAAAGAATAT+TGG | - | chr4_2:44895330-44895349 | None:intergenic | 15.0% |
| !!! | TTTTTTGACAAGAATTTTAA+TGG | + | chr4_2:44896241-44896260 | Msa0601840:CDS | 15.0% |
| !!! | ATGTGTTATAAAACTTTTTT+GGG | + | chr4_2:44896978-44896997 | Msa0601840:intron | 15.0% |
| !!! | TTACTTTTATGATACATTAA+TGG | + | chr4_2:44897172-44897191 | Msa0601840:intron | 15.0% |
| !!! | ATATTTTTTTAAAATAAGGG+AGG | + | chr4_2:44897738-44897757 | Msa0601840:intron | 15.0% |
| !!! | TATTTTTTTAAAATAAGGGA+GGG | + | chr4_2:44897739-44897758 | Msa0601840:intron | 15.0% |
| !! | AATTATTATATGTTTAGAGA+CGG | + | chr4_2:44897766-44897785 | Msa0601840:intron | 15.0% |
| !!! | TAATGTTTTAATTAAACTCA+AGG | - | chr4_2:44897994-44898013 | None:intergenic | 15.0% |
| !! | ACTGAAAAAAGAGAAATTAA+CGG | - | chr4_2:44895285-44895304 | None:intergenic | 20.0% |
| !! | AGATTGTACATTATGAATAA+TGG | - | chr4_2:44895381-44895400 | None:intergenic | 20.0% |
| !! | TGATAAATTAATTATGTGCA+TGG | + | chr4_2:44896540-44896559 | Msa0601840:intron | 20.0% |
| !!! | TTCTTTTTGAAATGTTTTCT+AGG | + | chr4_2:44896942-44896961 | Msa0601840:intron | 20.0% |
| !!! | GATGTGTTATAAAACTTTTT+TGG | + | chr4_2:44896977-44896996 | Msa0601840:intron | 20.0% |
| !!! | TGTGTTATAAAACTTTTTTG+GGG | + | chr4_2:44896979-44896998 | Msa0601840:intron | 20.0% |
| !! | ACTCAAAATATGTTCAAAAA+AGG | + | chr4_2:44897227-44897246 | Msa0601840:intron | 20.0% |
| !! | ATATTTACAACTTCAAAACA+TGG | - | chr4_2:44897420-44897439 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAAAATAAGGGAG+GGG | + | chr4_2:44897740-44897759 | Msa0601840:intron | 20.0% |
| !! | ATTATTATATGTTTAGAGAC+GGG | + | chr4_2:44897767-44897786 | Msa0601840:intron | 20.0% |
| !!! | TGTTAATCTTTTCTATAAGT+AGG | + | chr4_2:44898827-44898846 | Msa0601840:three_prime_UTR | 20.0% |
| !!! | TTGTTGTTATTTTAGTACAA+AGG | + | chr4_2:44898903-44898922 | Msa0601840:three_prime_UTR | 20.0% |
| !!! | AATTTCTCTTTTTTCAGTTC+CGG | + | chr4_2:44895287-44895306 | Msa0601840:CDS | 25.0% |
| ! | GATACTTATTATTTCGTCTA+CGG | + | chr4_2:44895561-44895580 | Msa0601840:intron | 25.0% |
| !!! | TGCTAGTTGATTTGATTTTT+GGG | - | chr4_2:44895702-44895721 | None:intergenic | 25.0% |
| !!! | TTGCTAGTTGATTTGATTTT+TGG | - | chr4_2:44895703-44895722 | None:intergenic | 25.0% |
| !! | GCGACATATTTTATATACTT+GGG | - | chr4_2:44895935-44895954 | None:intergenic | 25.0% |
| !! | AGCGACATATTTTATATACT+TGG | - | chr4_2:44895936-44895955 | None:intergenic | 25.0% |
| ! | TACTTTAAGCAGTAAATTGA+TGG | + | chr4_2:44896101-44896120 | Msa0601840:intron | 25.0% |
| ! | CTCTGATAATAAAAAATGTG+TGG | - | chr4_2:44896613-44896632 | None:intergenic | 25.0% |
| !! | TCTTCTTAGACGTTTTTAAT+TGG | + | chr4_2:44896709-44896728 | Msa0601840:intron | 25.0% |
| !!! | GTTTAAGTATCTTTTTGACT+CGG | + | chr4_2:44896919-44896938 | Msa0601840:intron | 25.0% |
| !! | TTCGTGTATGATTAATTTTC+AGG | + | chr4_2:44897274-44897293 | Msa0601840:intron | 25.0% |
| !!! | TTTTAGTTGTGATGAATAGA+TGG | + | chr4_2:44897439-44897458 | Msa0601840:intron | 25.0% |
| !! | AAAGTATGGAAGAATTTTAG+TGG | + | chr4_2:44897965-44897984 | Msa0601840:intron | 25.0% |
| !!! | GTTTTTCAAATAAAACAGCT+TGG | + | chr4_2:44898086-44898105 | Msa0601840:intron | 25.0% |
| !!! | TTTTGAAAAGAAGGTATGAA+TGG | - | chr4_2:44898335-44898354 | None:intergenic | 25.0% |
| !! | GTTTGATGATAAATACAACA+TGG | - | chr4_2:44898720-44898739 | None:intergenic | 25.0% |
| ! | TATTTATCATCAAACCTTTC+AGG | + | chr4_2:44898725-44898744 | Msa0601840:CDS | 25.0% |
| GAAAAAAGAGAAATTAACGG+CGG | - | chr4_2:44895282-44895301 | None:intergenic | 30.0% | |
| TACTTCAGAGACTAAATTGA+CGG | - | chr4_2:44895860-44895879 | None:intergenic | 30.0% | |
| !! | TGACGGATTTCATATACTTT+AGG | + | chr4_2:44896027-44896046 | Msa0601840:intron | 30.0% |
| ! | GACGGATTTCATATACTTTA+GGG | + | chr4_2:44896028-44896047 | Msa0601840:intron | 30.0% |
| ACGGATTTCATATACTTTAG+GGG | + | chr4_2:44896029-44896048 | Msa0601840:intron | 30.0% | |
| GTTGGATTCTCAATTACTAA+TGG | + | chr4_2:44896165-44896184 | Msa0601840:intron | 30.0% | |
| GATTCTCAATTACTAATGGA+TGG | + | chr4_2:44896169-44896188 | Msa0601840:intron | 30.0% | |
| AGTATCCTGCAAAAAGATTA+GGG | - | chr4_2:44896200-44896219 | None:intergenic | 30.0% | |
| !! | CAAGAATTTTAATGGTGTGT+CGG | + | chr4_2:44896249-44896268 | Msa0601840:CDS | 30.0% |
| AAAGGCTAATTCGTTTGATA+GGG | + | chr4_2:44896660-44896679 | Msa0601840:intron | 30.0% | |
| ! | ATAGGGTTTATCCTTTTCAA+CGG | + | chr4_2:44896677-44896696 | Msa0601840:intron | 30.0% |
| AAATCTGTCTCAAATTCTCT+TGG | + | chr4_2:44897330-44897349 | Msa0601840:intron | 30.0% | |
| TTGCAACATAAAGTCTATGT+AGG | + | chr4_2:44897614-44897633 | Msa0601840:intron | 30.0% | |
| ! | TAATTTTACTCGCATGCTTT+TGG | + | chr4_2:44897682-44897701 | Msa0601840:intron | 30.0% |
| AACAATCAGATGCTAATTTC+TGG | - | chr4_2:44898053-44898072 | None:intergenic | 30.0% | |
| TTCAATGGAACAAATTTACG+CGG | + | chr4_2:44898161-44898180 | Msa0601840:CDS | 30.0% | |
| TGCTTTCAAAAACTGAAACT+GGG | - | chr4_2:44898202-44898221 | None:intergenic | 30.0% | |
| ! | TTCTTTTCAAAAGCAGCAAT+CGG | + | chr4_2:44898343-44898362 | Msa0601840:CDS | 30.0% |
| AATCAGGAAAAAGGTTAATC+AGG | + | chr4_2:44898676-44898695 | Msa0601840:CDS | 30.0% | |
| TATTCGCTGCTGATATTGTT+AGG | + | chr4_2:44895480-44895499 | Msa0601840:intron | 35.0% | |
| ! | GACTGGTTATCTTATCAGAA+TGG | + | chr4_2:44895732-44895751 | Msa0601840:intron | 35.0% |
| GTAATTGCTTAATGTTCCCA+TGG | + | chr4_2:44895819-44895838 | Msa0601840:intron | 35.0% | |
| AATGTAAGAGACTAACGTGA+CGG | + | chr4_2:44895973-44895992 | Msa0601840:intron | 35.0% | |
| AGTGTGAAGTAGCATATGTT+GGG | + | chr4_2:44896142-44896161 | Msa0601840:intron | 35.0% | |
| TATCCTGCAAAAAGATTAGG+GGG | - | chr4_2:44896198-44896217 | None:intergenic | 35.0% | |
| GTATCCTGCAAAAAGATTAG+GGG | - | chr4_2:44896199-44896218 | None:intergenic | 35.0% | |
| CAGTATCCTGCAAAAAGATT+AGG | - | chr4_2:44896201-44896220 | None:intergenic | 35.0% | |
| ! | TGATTTTCCACTTGAAGATG+TGG | + | chr4_2:44896303-44896322 | Msa0601840:CDS | 35.0% |
| CAAAGGCTAATTCGTTTGAT+AGG | + | chr4_2:44896659-44896678 | Msa0601840:intron | 35.0% | |
| ! | TAGGGTTTATCCTTTTCAAC+GGG | + | chr4_2:44896678-44896697 | Msa0601840:intron | 35.0% |
| ! | TATGCTTGCTTTGATGACTA+TGG | + | chr4_2:44896741-44896760 | Msa0601840:intron | 35.0% |
| ! | TGATGACTATGGCATTTTGT+TGG | + | chr4_2:44896752-44896771 | Msa0601840:intron | 35.0% |
| !! | TTGTTGGTCAGGATTTTTAG+CGG | + | chr4_2:44896768-44896787 | Msa0601840:intron | 35.0% |
| TTACTACAATGATGTTGTGC+AGG | + | chr4_2:44896801-44896820 | Msa0601840:intron | 35.0% | |
| ATAGTACTCATACCTTAACG+TGG | + | chr4_2:44897356-44897375 | Msa0601840:intron | 35.0% | |
| GGTAATGAATGACATTCCTT+TGG | + | chr4_2:44897505-44897524 | Msa0601840:intron | 35.0% | |
| AACTCAATCAACCTAGTCAT+TGG | - | chr4_2:44897596-44897615 | None:intergenic | 35.0% | |
| TATCACTGGATTACAAAGCT+AGG | + | chr4_2:44897836-44897855 | Msa0601840:intron | 35.0% | |
| AATTATCAGATGCCATCCTA+CGG | - | chr4_2:44897879-44897898 | None:intergenic | 35.0% | |
| CACAGAGAAAATCACTTGAA+AGG | - | chr4_2:44897924-44897943 | None:intergenic | 35.0% | |
| !! | CTTTCAAGTGATTTTCTCTG+TGG | + | chr4_2:44897922-44897941 | Msa0601840:intron | 35.0% |
| GCGTGTATACATGTAAAGTA+TGG | + | chr4_2:44897951-44897970 | Msa0601840:intron | 35.0% | |
| ! | TTGAAGGAGACATTTTGGAT+GGG | - | chr4_2:44898146-44898165 | None:intergenic | 35.0% |
| ! | ATTGAAGGAGACATTTTGGA+TGG | - | chr4_2:44898147-44898166 | None:intergenic | 35.0% |
| ATCCAAAATGTCTCCTTCAA+TGG | + | chr4_2:44898146-44898165 | Msa0601840:CDS | 35.0% | |
| ! | TTCCATTGAAGGAGACATTT+TGG | - | chr4_2:44898151-44898170 | None:intergenic | 35.0% |
| ! | GCGTAAATTTGTTCCATTGA+AGG | - | chr4_2:44898162-44898181 | None:intergenic | 35.0% |
| CTGCTTTCAAAAACTGAAAC+TGG | - | chr4_2:44898203-44898222 | None:intergenic | 35.0% | |
| TGAAAGCAGTAGTTATTCCT+CGG | + | chr4_2:44898214-44898233 | Msa0601840:CDS | 35.0% | |
| AAAGTTGTAATTCTCAACCG+AGG | - | chr4_2:44898234-44898253 | None:intergenic | 35.0% | |
| !!! | GATTGCTGCTTTTGAAAAGA+AGG | - | chr4_2:44898344-44898363 | None:intergenic | 35.0% |
| AAATTCTCACAAGAAGGTCT+TGG | + | chr4_2:44898652-44898671 | Msa0601840:CDS | 35.0% | |
| GTTAATCAGGAGACTGTTAA+AGG | + | chr4_2:44898689-44898708 | Msa0601840:CDS | 35.0% | |
| AAACCTTTCAGGAATTCTCT+AGG | + | chr4_2:44898736-44898755 | Msa0601840:CDS | 35.0% | |
| TATCCTAGAGAATTCCTGAA+AGG | - | chr4_2:44898742-44898761 | None:intergenic | 35.0% | |
| CTATAAGTAGGAATCGAACT+CGG | + | chr4_2:44898839-44898858 | Msa0601840:three_prime_UTR | 35.0% | |
| TGATGAGATAACGCAGTTGA+TGG | - | chr4_2:44895239-44895258 | None:intergenic | 40.0% | |
| AAAAGAGAAATTAACGGCGG+TGG | - | chr4_2:44895279-44895298 | None:intergenic | 40.0% | |
| CAAAGTCTCAAGGCATAACA+TGG | - | chr4_2:44895437-44895456 | None:intergenic | 40.0% | |
| CATGTTATGCCTTGAGACTT+TGG | + | chr4_2:44895435-44895454 | Msa0601840:intron | 40.0% | |
| TTATGCCTTGAGACTTTGGA+GGG | + | chr4_2:44895439-44895458 | Msa0601840:intron | 40.0% | |
| ACTAGCAAACAAAGCTTGAC+TGG | + | chr4_2:44895715-44895734 | Msa0601840:intron | 40.0% | |
| CATGCAGTAGGTAGTATTGT+TGG | + | chr4_2:44895759-44895778 | Msa0601840:intron | 40.0% | |
| GTTTATTCTTCCTCGACCAT+GGG | - | chr4_2:44895838-44895857 | None:intergenic | 40.0% | |
| AAGTAACTAGTGACGAGTGA+CGG | + | chr4_2:44896010-44896029 | Msa0601840:intron | 40.0% | |
| GAGTGTGAAGTAGCATATGT+TGG | + | chr4_2:44896141-44896160 | Msa0601840:intron | 40.0% | |
| GTGTGAAGTAGCATATGTTG+GGG | + | chr4_2:44896143-44896162 | Msa0601840:intron | 40.0% | |
| ! | TTTCCCCCTAATCTTTTTGC+AGG | + | chr4_2:44896192-44896211 | Msa0601840:intron | 40.0% |
| CTGCTAATATGAAGAACAGC+TGG | + | chr4_2:44896218-44896237 | Msa0601840:CDS | 40.0% | |
| TCAGTTTCCACATCTTCAAG+TGG | - | chr4_2:44896313-44896332 | None:intergenic | 40.0% | |
| CTTGAAGATGTGGAAACTGA+TGG | + | chr4_2:44896313-44896332 | Msa0601840:CDS | 40.0% | |
| ACTGAGAAAACACCAAGAGA+TGG | - | chr4_2:44896382-44896401 | None:intergenic | 40.0% | |
| !!! | TCTTGGTGTTTTCTCAGTAC+CGG | + | chr4_2:44896384-44896403 | Msa0601840:CDS | 40.0% |
| AGAGTCCTGTTGTGTATGTT+TGG | + | chr4_2:44896629-44896648 | Msa0601840:intron | 40.0% | |
| AGCAACCAAACATACACAAC+AGG | - | chr4_2:44896637-44896656 | None:intergenic | 40.0% | |
| GTATGTTTGGTTGCTTGCAA+AGG | + | chr4_2:44896642-44896661 | Msa0601840:intron | 40.0% | |
| GAAAGTTACACCCGTTGAAA+AGG | - | chr4_2:44896691-44896710 | None:intergenic | 40.0% | |
| ! | ACTATGGCATTTTGTTGGTC+AGG | + | chr4_2:44896757-44896776 | Msa0601840:intron | 40.0% |
| !!! | TGTTGGTCAGGATTTTTAGC+GGG | + | chr4_2:44896769-44896788 | Msa0601840:intron | 40.0% |
| TCAAGCTTAAAAGATCGACG+AGG | + | chr4_2:44896859-44896878 | Msa0601840:CDS | 40.0% | |
| ! | ACGAGGACTAGTAAGTGAAA+GGG | + | chr4_2:44896876-44896895 | Msa0601840:intron | 40.0% |
| TACTCATACCTTAACGTGGA+GGG | + | chr4_2:44897360-44897379 | Msa0601840:intron | 40.0% | |
| CTCAGAAAGTGAGAAAGTTC+TGG | + | chr4_2:44897391-44897410 | Msa0601840:intron | 40.0% | |
| TTCATGTGTGTGCTTGAAGA+TGG | + | chr4_2:44897464-44897483 | Msa0601840:intron | 40.0% | |
| GTGTGCTTGAAGATGGTTTA+TGG | + | chr4_2:44897471-44897490 | Msa0601840:intron | 40.0% | |
| CTTGAAGATGGTTTATGGCT+AGG | + | chr4_2:44897476-44897495 | Msa0601840:intron | 40.0% | |
| TGGTTTATGGCTAGGTAACA+TGG | + | chr4_2:44897484-44897503 | Msa0601840:intron | 40.0% | |
| ATCATCGATCGATCTTATCC+TGG | - | chr4_2:44897538-44897557 | None:intergenic | 40.0% | |
| TCAATCAACCTAGTCATTGG+CGG | - | chr4_2:44897593-44897612 | None:intergenic | 40.0% | |
| TATATGTTTAGAGACGGGAG+AGG | + | chr4_2:44897772-44897791 | Msa0601840:intron | 40.0% | |
| GACCATCATACAGTCTTCAA+CGG | + | chr4_2:44897800-44897819 | Msa0601840:intron | 40.0% | |
| GTGATTGAACTCTGTATCAC+TGG | + | chr4_2:44897822-44897841 | Msa0601840:intron | 40.0% | |
| ATTATCAGATGCCATCCTAC+GGG | - | chr4_2:44897878-44897897 | None:intergenic | 40.0% | |
| !! | GGAATAGTTTTGCCATATGC+AGG | - | chr4_2:44898125-44898144 | None:intergenic | 40.0% |
| AAAAACTGAAACTGGGCTGT+AGG | - | chr4_2:44898195-44898214 | None:intergenic | 40.0% | |
| CATTATGCAGAGCCCAAAAA+AGG | + | chr4_2:44898387-44898406 | Msa0601840:CDS | 40.0% | |
| !!! | GTCTTTCCTTGGCCTTTTTT+GGG | - | chr4_2:44898402-44898421 | None:intergenic | 40.0% |
| !!! | TGTCTTTCCTTGGCCTTTTT+TGG | - | chr4_2:44898403-44898422 | None:intergenic | 40.0% |
| TGGGAGATATTGTCTTTCCT+TGG | - | chr4_2:44898413-44898432 | None:intergenic | 40.0% | |
| CTCAATGCTATTAGAGAGCT+GGG | - | chr4_2:44898432-44898451 | None:intergenic | 40.0% | |
| TCTCAATGCTATTAGAGAGC+TGG | - | chr4_2:44898433-44898452 | None:intergenic | 40.0% | |
| TAGAAAATGTACGCATTGCG+AGG | + | chr4_2:44898487-44898506 | Msa0601840:CDS | 40.0% | |
| ! | AACTCCACAAGCATTGCATA+GGG | - | chr4_2:44898558-44898577 | None:intergenic | 40.0% |
| GTCGCCTATTTCCTGAATAT+CGG | + | chr4_2:44898591-44898610 | Msa0601840:CDS | 40.0% | |
| GCACTCAAATTCTCACAAGA+AGG | + | chr4_2:44898646-44898665 | Msa0601840:CDS | 40.0% | |
| ACAAGAAGGTCTTGGAAATC+AGG | + | chr4_2:44898660-44898679 | Msa0601840:CDS | 40.0% | |
| GGTCTTGGAAATCAGGAAAA+AGG | + | chr4_2:44898667-44898686 | Msa0601840:CDS | 40.0% | |
| GGACATTTGAAGAGACTCAC+CGG | - | chr4_2:44895309-44895328 | None:intergenic | 45.0% | |
| GTTATGCCTTGAGACTTTGG+AGG | + | chr4_2:44895438-44895457 | Msa0601840:intron | 45.0% | |
| ! | TATGCCTTGAGACTTTGGAG+GGG | + | chr4_2:44895440-44895459 | Msa0601840:intron | 45.0% |
| CTTAGTTTCAAAGCGGGTGA+AGG | - | chr4_2:44895513-44895532 | None:intergenic | 45.0% | |
| CGAGGTCTTAGTTTCAAAGC+GGG | - | chr4_2:44895519-44895538 | None:intergenic | 45.0% | |
| GCGAGGTCTTAGTTTCAAAG+CGG | - | chr4_2:44895520-44895539 | None:intergenic | 45.0% | |
| AAAACTCACACACAACTGCG+AGG | - | chr4_2:44895537-44895556 | None:intergenic | 45.0% | |
| ! | CGCAGTTGTGTGTGAGTTTT+AGG | + | chr4_2:44895537-44895556 | Msa0601840:intron | 45.0% |
| GGTTTATTCTTCCTCGACCA+TGG | - | chr4_2:44895839-44895858 | None:intergenic | 45.0% | |
| GAAGTAGCATATGTTGGGGT+TGG | + | chr4_2:44896147-44896166 | Msa0601840:intron | 45.0% | |
| ! | AGATGTGGAAACTGATGGTG+TGG | + | chr4_2:44896318-44896337 | Msa0601840:CDS | 45.0% |
| CACCTTGAAGAACCATCTCT+TGG | + | chr4_2:44896367-44896386 | Msa0601840:CDS | 45.0% | |
| CACCAAGAGATGGTTCTTCA+AGG | - | chr4_2:44896372-44896391 | None:intergenic | 45.0% | |
| !! | TCCTGTCTTTGCTGTTTGGA+TGG | + | chr4_2:44896485-44896504 | Msa0601840:intron | 45.0% |
| TCCATCCAAACAGCAAAGAC+AGG | - | chr4_2:44896489-44896508 | None:intergenic | 45.0% | |
| ! | GACGAGGACTAGTAAGTGAA+AGG | + | chr4_2:44896875-44896894 | Msa0601840:intron | 45.0% |
| ! | CGAGGACTAGTAAGTGAAAG+GGG | + | chr4_2:44896877-44896896 | Msa0601840:intron | 45.0% |
| GTACTCATACCTTAACGTGG+AGG | + | chr4_2:44897359-44897378 | Msa0601840:intron | 45.0% | |
| TACCTTAACGTGGAGGGATA+TGG | + | chr4_2:44897366-44897385 | Msa0601840:intron | 45.0% | |
| TTATCCTGGTTGTCAGCCAA+AGG | - | chr4_2:44897524-44897543 | None:intergenic | 45.0% | |
| CACCGTTGAAGACTGTATGA+TGG | - | chr4_2:44897805-44897824 | None:intergenic | 45.0% | |
| !! | GTGATTTTCTCTGTGGACTG+TGG | + | chr4_2:44897929-44897948 | Msa0601840:intron | 45.0% |
| AAACAGCTTGGAAAGACTGC+TGG | + | chr4_2:44898098-44898117 | Msa0601840:intron | 45.0% | |
| AGGTAACTGAAACGCCACAA+TGG | + | chr4_2:44898507-44898526 | Msa0601840:CDS | 45.0% | |
| ! | CAAGCATTGCATAGGGTCTT+AGG | - | chr4_2:44898551-44898570 | None:intergenic | 45.0% |
| AAGACCCTATGCAATGCTTG+TGG | + | chr4_2:44898551-44898570 | Msa0601840:CDS | 45.0% | |
| ! | GAACTCCACAAGCATTGCAT+AGG | - | chr4_2:44898559-44898578 | None:intergenic | 45.0% |
| ATGCTTGTGGAGTTCGATAC+AGG | + | chr4_2:44898564-44898583 | Msa0601840:CDS | 45.0% | |
| CAGGCCGATATTCAGGAAAT+AGG | - | chr4_2:44898598-44898617 | None:intergenic | 45.0% | |
| ! | GCACTGATGCTTCAAAGGTT+GGG | - | chr4_2:44898628-44898647 | None:intergenic | 45.0% |
| ! | TGCACTGATGCTTCAAAGGT+TGG | - | chr4_2:44898629-44898648 | None:intergenic | 45.0% |
| ! | TGAGTGCACTGATGCTTCAA+AGG | - | chr4_2:44898633-44898652 | None:intergenic | 45.0% |
| ! | GTGTGAGTGTTGTAAACCCT+CGG | - | chr4_2:44898868-44898887 | None:intergenic | 45.0% |
| !!! | GATAATATTTTTTTAAAATA+AGG | + | chr4_2:44897734-44897753 | Msa0601840:intron | 5.0% |
| AGAGAAATTAACGGCGGTGG+TGG | - | chr4_2:44895276-44895295 | None:intergenic | 50.0% | |
| CGCTGCTGATATTGTTAGGC+TGG | + | chr4_2:44895484-44895503 | Msa0601840:intron | 50.0% | |
| CAGAATGGTGCACATGCAGT+AGG | + | chr4_2:44895747-44895766 | Msa0601840:intron | 50.0% | |
| GCTTAATGTTCCCATGGTCG+AGG | + | chr4_2:44895825-44895844 | Msa0601840:intron | 50.0% | |
| GGTGTGTCGGATGAGATTCT+TGG | + | chr4_2:44896262-44896281 | Msa0601840:CDS | 50.0% | |
| ! | GGAAACTGATGGTGTGGAAC+AGG | + | chr4_2:44896324-44896343 | Msa0601840:CDS | 50.0% |
| ! | CTGATGGTGTGGAACAGGAT+TGG | + | chr4_2:44896329-44896348 | Msa0601840:CDS | 50.0% |
| !! | CTGCTCCTGTCTTTGCTGTT+TGG | + | chr4_2:44896481-44896500 | Msa0601840:intron | 50.0% |
| CATTCCTTTGGCTGACAACC+AGG | + | chr4_2:44897517-44897536 | Msa0601840:intron | 50.0% | |
| AAGACTGCTGGACCTGCATA+TGG | + | chr4_2:44898110-44898129 | Msa0601840:CDS | 50.0% | |
| CTGAAACTGGGCTGTAGGTT+TGG | - | chr4_2:44898190-44898209 | None:intergenic | 50.0% | |
| TTACCACGAGGACGCTTTGT+CGG | - | chr4_2:44898272-44898291 | None:intergenic | 50.0% | |
| CAATCGGATAAACAGCGTGC+TGG | + | chr4_2:44898359-44898378 | Msa0601840:CDS | 50.0% | |
| TGAAACGCCACAATGGAGAG+AGG | + | chr4_2:44898514-44898533 | Msa0601840:CDS | 50.0% | |
| GAAACGCCACAATGGAGAGA+GGG | + | chr4_2:44898515-44898534 | Msa0601840:CDS | 50.0% | |
| AAACGCCACAATGGAGAGAG+GGG | + | chr4_2:44898516-44898535 | Msa0601840:CDS | 50.0% | |
| CATAGGGTCTTAGGACCCTT+AGG | - | chr4_2:44898542-44898561 | None:intergenic | 50.0% | |
| TGTGGAGTTCGATACAGGTC+TGG | + | chr4_2:44898569-44898588 | Msa0601840:CDS | 50.0% | |
| GAATCGAACTCGGTATCCGA+GGG | + | chr4_2:44898849-44898868 | Msa0601840:three_prime_UTR | 50.0% | |
| CTCTCCCCTCCAAAGTCTCA+AGG | - | chr4_2:44895447-44895466 | None:intergenic | 55.0% | |
| ! | CTTGAGACTTTGGAGGGGAG+AGG | + | chr4_2:44895445-44895464 | Msa0601840:intron | 55.0% |
| ! | GTACCGGCATTTGAGCTACG+CGG | + | chr4_2:44896400-44896419 | Msa0601840:CDS | 55.0% |
| CGCCATATCCCTCCACGTTA+AGG | - | chr4_2:44897371-44897390 | None:intergenic | 55.0% | |
| CTGTCATGCCGCCAATGACT+AGG | + | chr4_2:44897582-44897601 | Msa0601840:intron | 55.0% | |
| TACCACGAGGACGCTTTGTC+GGG | - | chr4_2:44898271-44898290 | None:intergenic | 55.0% | |
| AGAGCCTGTCGAAGCTTGAG+AGG | - | chr4_2:44898304-44898323 | None:intergenic | 55.0% | |
| GCAGAGCCCAAAAAAGGCCA+AGG | + | chr4_2:44898393-44898412 | Msa0601840:CDS | 55.0% | |
| TTAGGCCCCTCTCTCCATTG+TGG | - | chr4_2:44898524-44898543 | None:intergenic | 55.0% | |
| ACAATGGAGAGAGGGGCCTA+AGG | + | chr4_2:44898523-44898542 | Msa0601840:CDS | 55.0% | |
| CAATGGAGAGAGGGGCCTAA+GGG | + | chr4_2:44898524-44898543 | Msa0601840:CDS | 55.0% | |
| CTAGCTGCAGGCCGATATTC+AGG | - | chr4_2:44898605-44898624 | None:intergenic | 55.0% | |
| !! | TCAAAGGTTGGGCTAGCTGC+AGG | - | chr4_2:44898617-44898636 | None:intergenic | 55.0% |
| GGAATCGAACTCGGTATCCG+AGG | + | chr4_2:44898848-44898867 | Msa0601840:three_prime_UTR | 55.0% | |
| TCGCCGCGTAGCTCAAATGC+CGG | - | chr4_2:44896406-44896425 | None:intergenic | 60.0% | |
| ATTCGCCAAAGCGCACCCGT+AGG | + | chr4_2:44897860-44897879 | Msa0601840:intron | 60.0% | |
| GGACGCTTTGTCGGGATCAC+TGG | - | chr4_2:44898263-44898282 | None:intergenic | 60.0% | |
| ! | ATCCCGACAAAGCGTCCTCG+TGG | + | chr4_2:44898266-44898285 | Msa0601840:CDS | 60.0% |
| AGCGTCCTCGTGGTAAACGC+CGG | + | chr4_2:44898276-44898295 | Msa0601840:CDS | 60.0% | |
| ! | TGTCGAAGCTTGAGAGGCGC+CGG | - | chr4_2:44898298-44898317 | None:intergenic | 60.0% |
| GCCAAAGCGCACCCGTAGGA+TGG | + | chr4_2:44897864-44897883 | Msa0601840:intron | 65.0% | |
| GCCATCCTACGGGTGCGCTT+TGG | - | chr4_2:44897868-44897887 | None:intergenic | 65.0% | |
| GGCGCCTCTCAAGCTTCGAC+AGG | + | chr4_2:44898297-44898316 | Msa0601840:CDS | 65.0% | |
| !! | AGGCGCCGGCGTTTACCACG+AGG | - | chr4_2:44898284-44898303 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 44895198 | 44898970 | 44895198 | ID=Msa0601840;Name=Msa0601840 |
| chr4_2 | mRNA | 44895198 | 44898970 | 44895198 | ID=Msa0601840-mRNA-1;Parent=Msa0601840;Name=Msa0601840-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.66|0.5|1|0.33|0.5|4|213|354 |
| chr4_2 | exon | 44895198 | 44895308 | 44895198 | ID=Msa0601840-mRNA-1:exon:10006;Parent=Msa0601840-mRNA-1 |
| chr4_2 | exon | 44896214 | 44896450 | 44896214 | ID=Msa0601840-mRNA-1:exon:10007;Parent=Msa0601840-mRNA-1 |
| chr4_2 | exon | 44896823 | 44896885 | 44896823 | ID=Msa0601840-mRNA-1:exon:10008;Parent=Msa0601840-mRNA-1 |
| chr4_2 | exon | 44898104 | 44898970 | 44898104 | ID=Msa0601840-mRNA-1:exon:10009;Parent=Msa0601840-mRNA-1 |
| chr4_2 | CDS | 44895198 | 44895308 | 44895198 | ID=Msa0601840-mRNA-1:cds;Parent=Msa0601840-mRNA-1 |
| chr4_2 | CDS | 44896214 | 44896450 | 44896214 | ID=Msa0601840-mRNA-1:cds;Parent=Msa0601840-mRNA-1 |
| chr4_2 | CDS | 44896823 | 44896885 | 44896823 | ID=Msa0601840-mRNA-1:cds;Parent=Msa0601840-mRNA-1 |
| chr4_2 | CDS | 44898104 | 44898757 | 44898104 | ID=Msa0601840-mRNA-1:cds;Parent=Msa0601840-mRNA-1 |
| chr4_2 | three_prime_UTR | 44898758 | 44898970 | 44898758 | ID=Msa0601840-mRNA-1:three_prime_utr;Parent=Msa0601840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
