Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682650 | KEH30032.1 | 95.938 | 320 | 13 | 0 | 1 | 320 | 83 | 402 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682650 | sp|Q6DBP8|GAT11_ARATH | 35.127 | 316 | 149 | 11 | 8 | 302 | 10 | 290 | 3.93e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682650 | A0A072UK09 | 95.938 | 320 | 13 | 0 | 1 | 320 | 83 | 402 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0682650 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0601840 | Msa0682650 | 0.813042 | 3.126171e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682650 | MtrunA17_Chr4g0028961 | 95.938 | 320 | 13 | 0 | 1 | 320 | 1 | 320 | 0.0 | 602 |
| Msa0682650 | MtrunA17_Chr2g0326771 | 54.717 | 318 | 120 | 7 | 1 | 318 | 8 | 301 | 8.51e-103 | 303 |
| Msa0682650 | MtrunA17_Chr1g0199671 | 39.535 | 215 | 99 | 5 | 132 | 316 | 118 | 331 | 3.16e-35 | 130 |
| Msa0682650 | MtrunA17_Chr1g0213161 | 78.462 | 65 | 14 | 0 | 232 | 296 | 152 | 216 | 9.48e-34 | 124 |
| Msa0682650 | MtrunA17_Chr1g0169431 | 72.222 | 72 | 20 | 0 | 232 | 303 | 172 | 243 | 2.72e-32 | 120 |
| Msa0682650 | MtrunA17_Chr4g0035891 | 72.059 | 68 | 19 | 0 | 231 | 298 | 210 | 277 | 3.11e-32 | 121 |
| Msa0682650 | MtrunA17_Chr3g0145121 | 69.444 | 72 | 22 | 0 | 227 | 298 | 210 | 281 | 1.08e-31 | 120 |
| Msa0682650 | MtrunA17_Chr6g0461591 | 58.333 | 96 | 40 | 0 | 201 | 296 | 161 | 256 | 2.53e-31 | 118 |
| Msa0682650 | MtrunA17_Chr8g0372291 | 68.000 | 75 | 22 | 1 | 232 | 306 | 218 | 290 | 3.50e-31 | 118 |
| Msa0682650 | MtrunA17_Chr7g0253101 | 71.831 | 71 | 20 | 0 | 229 | 299 | 185 | 255 | 3.99e-31 | 117 |
| Msa0682650 | MtrunA17_Chr5g0395391 | 66.279 | 86 | 28 | 1 | 213 | 298 | 252 | 336 | 4.97e-31 | 119 |
| Msa0682650 | MtrunA17_Chr5g0395391 | 63.750 | 80 | 29 | 0 | 216 | 295 | 152 | 231 | 1.18e-27 | 110 |
| Msa0682650 | MtrunA17_Chr1g0146231 | 73.134 | 67 | 18 | 0 | 232 | 298 | 234 | 300 | 5.04e-31 | 119 |
| Msa0682650 | MtrunA17_Chr8g0340401 | 64.198 | 81 | 29 | 0 | 218 | 298 | 212 | 292 | 1.79e-30 | 117 |
| Msa0682650 | MtrunA17_Chr5g0404981 | 68.000 | 75 | 22 | 1 | 232 | 306 | 300 | 372 | 2.15e-30 | 118 |
| Msa0682650 | MtrunA17_Chr3g0140331 | 73.134 | 67 | 18 | 0 | 232 | 298 | 253 | 319 | 1.73e-29 | 115 |
| Msa0682650 | MtrunA17_Chr7g0232671 | 35.374 | 147 | 86 | 1 | 147 | 293 | 111 | 248 | 9.32e-23 | 95.1 |
| Msa0682650 | MtrunA17_Chr7g0232701 | 53.247 | 77 | 36 | 0 | 217 | 293 | 58 | 134 | 1.10e-22 | 91.7 |
| Msa0682650 | MtrunA17_Chr7g0232681 | 51.948 | 77 | 37 | 0 | 217 | 293 | 117 | 193 | 1.07e-21 | 90.9 |
| Msa0682650 | MtrunA17_Chr5g0404131 | 34.940 | 83 | 48 | 2 | 186 | 264 | 144 | 224 | 7.43e-12 | 65.1 |
| Msa0682650 | MtrunA17_Chr7g0271861 | 57.500 | 40 | 17 | 0 | 228 | 267 | 18 | 57 | 5.10e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682650 | AT1G08010.2 | 35.127 | 316 | 149 | 11 | 8 | 302 | 10 | 290 | 4.00e-48 | 164 |
| Msa0682650 | AT1G08010.1 | 35.127 | 316 | 149 | 11 | 8 | 302 | 10 | 290 | 4.00e-48 | 164 |
| Msa0682650 | AT1G08010.3 | 35.127 | 316 | 149 | 11 | 8 | 302 | 10 | 290 | 4.00e-48 | 164 |
| Msa0682650 | AT1G08000.2 | 36.000 | 300 | 164 | 8 | 8 | 301 | 10 | 287 | 8.56e-44 | 152 |
| Msa0682650 | AT1G08000.1 | 36.000 | 300 | 164 | 8 | 8 | 301 | 10 | 287 | 8.56e-44 | 152 |
| Msa0682650 | AT2G28340.1 | 33.117 | 308 | 144 | 8 | 5 | 302 | 6 | 261 | 1.90e-35 | 130 |
| Msa0682650 | AT3G54810.1 | 77.778 | 72 | 16 | 0 | 227 | 298 | 224 | 295 | 1.88e-34 | 128 |
| Msa0682650 | AT3G54810.2 | 77.778 | 72 | 16 | 0 | 227 | 298 | 224 | 295 | 1.88e-34 | 128 |
| Msa0682650 | AT3G24050.1 | 71.429 | 70 | 20 | 0 | 229 | 298 | 191 | 260 | 2.78e-31 | 119 |
| Msa0682650 | AT4G36240.1 | 42.767 | 159 | 69 | 4 | 138 | 296 | 92 | 228 | 7.69e-31 | 116 |
| Msa0682650 | AT3G60530.1 | 69.014 | 71 | 22 | 0 | 232 | 302 | 158 | 228 | 8.07e-31 | 116 |
| Msa0682650 | AT4G32890.1 | 68.056 | 72 | 23 | 0 | 227 | 298 | 192 | 263 | 8.07e-31 | 118 |
| Msa0682650 | AT5G25830.1 | 71.642 | 67 | 19 | 0 | 232 | 298 | 219 | 285 | 2.63e-30 | 117 |
| Msa0682650 | AT5G66320.2 | 66.216 | 74 | 25 | 0 | 225 | 298 | 242 | 315 | 4.48e-30 | 117 |
| Msa0682650 | AT5G66320.1 | 66.216 | 74 | 25 | 0 | 225 | 298 | 242 | 315 | 4.48e-30 | 117 |
| Msa0682650 | AT2G45050.1 | 53.000 | 100 | 44 | 1 | 202 | 298 | 146 | 245 | 1.17e-29 | 114 |
| Msa0682650 | AT3G51080.1 | 65.789 | 76 | 24 | 1 | 232 | 307 | 221 | 294 | 1.74e-29 | 115 |
| Msa0682650 | AT4G34680.1 | 60.976 | 82 | 30 | 1 | 229 | 308 | 177 | 258 | 2.68e-29 | 113 |
| Msa0682650 | AT4G34680.2 | 60.976 | 82 | 30 | 1 | 229 | 308 | 177 | 258 | 2.68e-29 | 113 |
| Msa0682650 | AT3G45170.1 | 62.857 | 70 | 26 | 0 | 229 | 298 | 112 | 181 | 3.69e-28 | 108 |
| Msa0682650 | AT2G18380.1 | 54.545 | 44 | 19 | 1 | 221 | 264 | 82 | 124 | 3.95e-11 | 62.0 |
Find 73 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATTGAAGGAGACATTT+TGG | 0.217499 | 4_4:-44577072 | None:intergenic |
| GAGAAATTGTTCACAAGATT+TGG | 0.237962 | 4_4:-44575283 | None:intergenic |
| TATTTATCATCAAACCTTTC+AGG | 0.244075 | 4_4:+44577649 | Msa0682650:CDS |
| CAAGCATTGCATAGGGTCTT+AGG | 0.290975 | 4_4:-44577472 | None:intergenic |
| CTAGCTGCAGGCCGATATTC+AGG | 0.293194 | 4_4:-44577526 | None:intergenic |
| GTTAATCAGGAGACTGTTAA+AGG | 0.309270 | 4_4:+44577613 | Msa0682650:CDS |
| CAGGCCGATATTCAGGAAAT+AGG | 0.331499 | 4_4:-44577519 | None:intergenic |
| GGTCTTGGAAATCAGGAAAA+AGG | 0.338584 | 4_4:+44577591 | Msa0682650:CDS |
| ACAAGAAGGTCTTGGAAATC+AGG | 0.346966 | 4_4:+44577584 | Msa0682650:CDS |
| GTCGCCTATTTCCTGAATAT+CGG | 0.393892 | 4_4:+44577515 | Msa0682650:CDS |
| GCGTAAATTTGTTCCATTGA+AGG | 0.400336 | 4_4:-44577083 | None:intergenic |
| TGGGAGATATTGTCTTTCCT+TGG | 0.402736 | 4_4:-44577334 | None:intergenic |
| CTGAAACTGGGCTGTAGGTT+CGG | 0.407286 | 4_4:-44577111 | None:intergenic |
| TACCACGAGGACGCTTTGTC+GGG | 0.437518 | 4_4:-44577192 | None:intergenic |
| AAATTCTCACAAGAAGGTCT+TGG | 0.447787 | 4_4:+44577576 | Msa0682650:CDS |
| TGCACTGATGCTTCAAAGGT+TGG | 0.449929 | 4_4:-44577550 | None:intergenic |
| TCAAAGGTTGGGCTAGCTGC+AGG | 0.450155 | 4_4:-44577538 | None:intergenic |
| GGCGCCTCTCAAGCTTCGAC+AGG | 0.458075 | 4_4:+44577221 | Msa0682650:CDS |
| ATCCAAAATGTCTCCTTCAA+TGG | 0.458572 | 4_4:+44577070 | Msa0682650:CDS |
| ATGCTTGTGGAGTTCGATAC+AGG | 0.460657 | 4_4:+44577488 | Msa0682650:CDS |
| CATAGGGTCTTAGGACCCTT+AGG | 0.477379 | 4_4:-44577463 | None:intergenic |
| TCTCAATGCTATTAGAGAGC+TGG | 0.477442 | 4_4:-44577354 | None:intergenic |
| GGACGCTTTGTCGGGATCAC+TGG | 0.489854 | 4_4:-44577184 | None:intergenic |
| CACCAAGAGATGGTTCTTCA+AGG | 0.491420 | 4_4:-44575210 | None:intergenic |
| GGAAACTGATGGTGTGGAAC+AGG | 0.492036 | 4_4:+44575165 | Msa0682650:CDS |
| CTCAATGCTATTAGAGAGCT+GGG | 0.500421 | 4_4:-44577353 | None:intergenic |
| AAGACTGCTGGACCTGCATA+TGG | 0.501903 | 4_4:+44577034 | Msa0682650:CDS |
| TTACCACGAGGACGCTTTGT+CGG | 0.503422 | 4_4:-44577193 | None:intergenic |
| CACCTTGAAGAACCATCTCT+TGG | 0.504280 | 4_4:+44575208 | Msa0682650:CDS |
| GCACTGATGCTTCAAAGGTT+GGG | 0.507344 | 4_4:-44577549 | None:intergenic |
| CGACAATGATATTCCGTGCC+TGG | 0.508479 | 4_4:+44577873 | Msa0682650:three_prime_UTR |
| CACATTCATGTTACCAGGCA+CGG | 0.511978 | 4_4:-44577886 | None:intergenic |
| CAATGGAGAGAGGGGCCTAA+GGG | 0.517972 | 4_4:+44577448 | Msa0682650:CDS |
| CTGCTAATATGAAGAACAGC+TGG | 0.521475 | 4_4:+44575059 | Msa0682650:exon |
| AAACAGCTTGGAAAGACTGC+TGG | 0.521813 | 4_4:+44577022 | Msa0682650:intron |
| TGTGGAGTTCGATACAGGTC+TGG | 0.526380 | 4_4:+44577493 | Msa0682650:CDS |
| ACAATGGAGAGAGGGGCCTA+AGG | 0.527062 | 4_4:+44577447 | Msa0682650:CDS |
| TGAAAGCAGTAGTTATTCCT+CGG | 0.529501 | 4_4:+44577138 | Msa0682650:CDS |
| GGTGTGTCGGATGAGATTCT+TGG | 0.532775 | 4_4:+44575103 | Msa0682650:CDS |
| AAACCTTTCAGGAATTCTCT+AGG | 0.536952 | 4_4:+44577660 | Msa0682650:CDS |
| CTGATGGTGTGGAACAGGAT+TGG | 0.558249 | 4_4:+44575170 | Msa0682650:CDS |
| GAACTCCACAAGCATTGCAT+AGG | 0.559486 | 4_4:-44577480 | None:intergenic |
| TGAAACGCCACAATGGAGAG+AGG | 0.562131 | 4_4:+44577438 | Msa0682650:CDS |
| GCACTCAAATTCTCACAAGA+AGG | 0.564610 | 4_4:+44577570 | Msa0682650:CDS |
| TGAGTGCACTGATGCTTCAA+AGG | 0.568513 | 4_4:-44577554 | None:intergenic |
| CAATCGGATAAACAGCGTGC+TGG | 0.568743 | 4_4:+44577283 | Msa0682650:CDS |
| TGTCGAAGCTTGAGAGGCGC+CGG | 0.571004 | 4_4:-44577219 | None:intergenic |
| AGAGCCTGTCGAAGCTTGAG+AGG | 0.571997 | 4_4:-44577225 | None:intergenic |
| GTGTGAGTGTTGTAAACCCT+CGG | 0.576833 | 4_4:-44577789 | None:intergenic |
| TCAGTTTCCACATCTTCAAG+TGG | 0.590091 | 4_4:-44575151 | None:intergenic |
| AACTCCACAAGCATTGCATA+GGG | 0.590903 | 4_4:-44577479 | None:intergenic |
| TATCCTAGAGAATTCCTGAA+AGG | 0.593357 | 4_4:-44577663 | None:intergenic |
| GGAATCGAACTCGGTATCCG+AGG | 0.593873 | 4_4:+44577772 | Msa0682650:three_prime_UTR |
| AAGACCCTATGCAATGCTTG+TGG | 0.595397 | 4_4:+44577475 | Msa0682650:CDS |
| CTATAAGTAGGAATCGAACT+CGG | 0.601877 | 4_4:+44577763 | Msa0682650:three_prime_UTR |
| TTAGGCCCCTCTCTCCATTG+TGG | 0.615985 | 4_4:-44577445 | None:intergenic |
| GAAACGCCACAATGGAGAGA+GGG | 0.617261 | 4_4:+44577439 | Msa0682650:CDS |
| TAGAAAATGTACGCATTGTG+AGG | 0.619646 | 4_4:+44577411 | Msa0682650:CDS |
| TCGCCGCGTAGCTCAAATGC+CGG | 0.621988 | 4_4:-44575244 | None:intergenic |
| AGCGTCCTCGTGGTAAACGC+CGG | 0.626063 | 4_4:+44577200 | Msa0682650:CDS |
| GAATCGAACTCGGTATCCGA+GGG | 0.632752 | 4_4:+44577773 | Msa0682650:three_prime_UTR |
| CTTGAAGATGTGGAAACTGA+TGG | 0.650171 | 4_4:+44575154 | Msa0682650:CDS |
| ACTGAGAAAACACCAAGAGA+TGG | 0.656666 | 4_4:-44575220 | None:intergenic |
| AAAGTTGTAATTCTCAACCG+AGG | 0.667884 | 4_4:-44577155 | None:intergenic |
| ATCCCGACAAAGCGTCCTCG+TGG | 0.667975 | 4_4:+44577190 | Msa0682650:CDS |
| AGATGTGGAAACTGATGGTG+TGG | 0.668716 | 4_4:+44575159 | Msa0682650:CDS |
| GTTTGATGATAAATACAACA+TGG | 0.669284 | 4_4:-44577641 | None:intergenic |
| AAACGCCACAATGGAGAGAG+GGG | 0.674715 | 4_4:+44577440 | Msa0682650:CDS |
| TTCAATGGAACAAATTTACG+CGG | 0.676345 | 4_4:+44577085 | Msa0682650:CDS |
| AGGTAACTGAAACGCCACAA+TGG | 0.680689 | 4_4:+44577431 | Msa0682650:CDS |
| AGGCGCCGGCGTTTACCACG+AGG | 0.716581 | 4_4:-44577205 | None:intergenic |
| GTACCGGCATTTGAGCTACG+CGG | 0.750665 | 4_4:+44575241 | Msa0682650:CDS |
| TCAAGCTTAAAAGATCGACG+AGG | 0.787048 | 4_4:+44575800 | Msa0682650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTTTTTTAAAATAA+GGG | + | chr4_4:44576659-44576678 | Msa0682650:intron | 0.0% |
| !!! | TTTTTTGACAAGAATTTTAA+TGG | + | chr4_4:44575082-44575101 | Msa0682650:CDS | 15.0% |
| !!! | ATGTGTTATAAAACTTTTTT+GGG | + | chr4_4:44575919-44575938 | Msa0682650:intron | 15.0% |
| !!! | TTTACTTTTATGATACATTT+TGG | + | chr4_4:44576071-44576090 | Msa0682650:intron | 15.0% |
| !!! | ATATTTTTTTAAAATAAGGG+AGG | + | chr4_4:44576662-44576681 | Msa0682650:intron | 15.0% |
| !!! | TATTTTTTTAAAATAAGGGA+GGG | + | chr4_4:44576663-44576682 | Msa0682650:intron | 15.0% |
| !! | AATTATTATATGTTTAGAGA+CGG | + | chr4_4:44576690-44576709 | Msa0682650:intron | 15.0% |
| !! | TGATAAATTAATTATGTGCA+TGG | + | chr4_4:44575481-44575500 | Msa0682650:intron | 20.0% |
| !! | CTCTGATAATAAAAAATATG+CGG | - | chr4_4:44575554-44575573 | None:intergenic | 20.0% |
| !!! | TTCTTTTTGAAATGTTTTCT+AGG | + | chr4_4:44575883-44575902 | Msa0682650:intron | 20.0% |
| !!! | GATGTGTTATAAAACTTTTT+TGG | + | chr4_4:44575918-44575937 | Msa0682650:intron | 20.0% |
| !!! | TGTGTTATAAAACTTTTTTG+GGG | + | chr4_4:44575920-44575939 | Msa0682650:intron | 20.0% |
| !! | ATAATTACAACTTCAAAACA+TGG | - | chr4_4:44576344-44576363 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAAAATAAGGGAG+GGG | + | chr4_4:44576664-44576683 | Msa0682650:intron | 20.0% |
| !! | ATTATTATATGTTTAGAGAC+GGG | + | chr4_4:44576691-44576710 | Msa0682650:intron | 20.0% |
| !!! | TAATGTTTTAATCAAACTCA+AGG | - | chr4_4:44576918-44576937 | None:intergenic | 20.0% |
| !! | GATTAAAACATTATGTACTA+TGG | + | chr4_4:44576925-44576944 | Msa0682650:intron | 20.0% |
| !!! | TGTTAATCTTTTCTATAAGT+AGG | + | chr4_4:44577751-44577770 | Msa0682650:three_prime_UTR | 20.0% |
| !!! | TTGTTGTTATTTTAGTACAA+AGG | + | chr4_4:44577827-44577846 | Msa0682650:three_prime_UTR | 20.0% |
| !! | TCTTCTTAGACGTTTTTAAT+TGG | + | chr4_4:44575650-44575669 | Msa0682650:intron | 25.0% |
| !!! | GTTTAAGTATCTTTTTGACT+CGG | + | chr4_4:44575860-44575879 | Msa0682650:intron | 25.0% |
| ! | GCTCAAAATATGTTCAAAAA+AGG | + | chr4_4:44576151-44576170 | Msa0682650:intron | 25.0% |
| !! | TTCGTGTATGATTAATTTTC+AGG | + | chr4_4:44576198-44576217 | Msa0682650:intron | 25.0% |
| !!! | TTTTAGTTGTGATGAATAGA+TGG | + | chr4_4:44576363-44576382 | Msa0682650:intron | 25.0% |
| !! | AAAGTATGGAAGAATTTTAG+TGG | + | chr4_4:44576889-44576908 | Msa0682650:intron | 25.0% |
| !! | GTTTGATGATAAATACAACA+TGG | - | chr4_4:44577644-44577663 | None:intergenic | 25.0% |
| ! | TATTTATCATCAAACCTTTC+AGG | + | chr4_4:44577649-44577668 | Msa0682650:CDS | 25.0% |
| !! | CAAGAATTTTAATGGTGTGT+CGG | + | chr4_4:44575090-44575109 | Msa0682650:CDS | 30.0% |
| GAGAAATTGTTCACAAGATT+TGG | - | chr4_4:44575286-44575305 | None:intergenic | 30.0% | |
| AAAGGCTAATTCGTTTGATA+GGG | + | chr4_4:44575601-44575620 | Msa0682650:intron | 30.0% | |
| ! | ATAGGGTTTATCCTTTTCAA+CGG | + | chr4_4:44575618-44575637 | Msa0682650:intron | 30.0% |
| CTGAACACAAATCATGATAA+TGG | + | chr4_4:44576096-44576115 | Msa0682650:intron | 30.0% | |
| AAATCTGTCTCAAATTCTCT+TGG | + | chr4_4:44576254-44576273 | Msa0682650:intron | 30.0% | |
| TTGCAACTTAAAGTCTATGT+AGG | + | chr4_4:44576538-44576557 | Msa0682650:intron | 30.0% | |
| ! | TAATTTTACTCGCATGCTTT+TGG | + | chr4_4:44576606-44576625 | Msa0682650:intron | 30.0% |
| TATCACTGAATTACAAAGCT+AGG | + | chr4_4:44576760-44576779 | Msa0682650:intron | 30.0% | |
| AACAATCAGATGCTAATTTC+TGG | - | chr4_4:44576977-44576996 | None:intergenic | 30.0% | |
| GTTCTTCAAATAAAACAGCT+TGG | + | chr4_4:44577010-44577029 | Msa0682650:intron | 30.0% | |
| TTCAATGGAACAAATTTACG+CGG | + | chr4_4:44577085-44577104 | Msa0682650:CDS | 30.0% | |
| TGCTTTCAAAAACTGAAACT+GGG | - | chr4_4:44577126-44577145 | None:intergenic | 30.0% | |
| !! | TTTTGAAAAGGAGGTATGAA+TGG | - | chr4_4:44577259-44577278 | None:intergenic | 30.0% |
| AATCAGGAAAAAGGTTAATC+AGG | + | chr4_4:44577600-44577619 | Msa0682650:CDS | 30.0% | |
| ! | TGATTTTCCACTTGAAGATG+TGG | + | chr4_4:44575144-44575163 | Msa0682650:CDS | 35.0% |
| CAAAGGCTAATTCGTTTGAT+AGG | + | chr4_4:44575600-44575619 | Msa0682650:intron | 35.0% | |
| ! | TAGGGTTTATCCTTTTCAAC+GGG | + | chr4_4:44575619-44575638 | Msa0682650:intron | 35.0% |
| ! | TATGCTTGCTTTGATGACTA+TGG | + | chr4_4:44575682-44575701 | Msa0682650:intron | 35.0% |
| ! | TGATGACTATGGCATTTTGT+TGG | + | chr4_4:44575693-44575712 | Msa0682650:intron | 35.0% |
| !! | TTGTTGGTCAGGATTTTTAG+CGG | + | chr4_4:44575709-44575728 | Msa0682650:intron | 35.0% |
| TTACTACAATGATGTTGTGC+AGG | + | chr4_4:44575742-44575761 | Msa0682650:intron | 35.0% | |
| ATAGTACTCATACCTTAACG+TGG | + | chr4_4:44576280-44576299 | Msa0682650:intron | 35.0% | |
| GGTAATGAATGACATTCCTT+TGG | + | chr4_4:44576429-44576448 | Msa0682650:intron | 35.0% | |
| ATCATCTATCGATCTTATCC+TGG | - | chr4_4:44576462-44576481 | None:intergenic | 35.0% | |
| AACTCAATCAACCTAGTCAT+TGG | - | chr4_4:44576520-44576539 | None:intergenic | 35.0% | |
| AATTATCAGATGCCATCCTA+CGG | - | chr4_4:44576803-44576822 | None:intergenic | 35.0% | |
| CACAGAGAAAATCACTTGAA+AGG | - | chr4_4:44576848-44576867 | None:intergenic | 35.0% | |
| !! | CTTTCAAGTGATTTTCTCTG+TGG | + | chr4_4:44576846-44576865 | Msa0682650:intron | 35.0% |
| GCGTGTATACATGTAAAGTA+TGG | + | chr4_4:44576875-44576894 | Msa0682650:intron | 35.0% | |
| ! | TTGAAGGAGACATTTTGGAT+GGG | - | chr4_4:44577070-44577089 | None:intergenic | 35.0% |
| ! | ATTGAAGGAGACATTTTGGA+TGG | - | chr4_4:44577071-44577090 | None:intergenic | 35.0% |
| ATCCAAAATGTCTCCTTCAA+TGG | + | chr4_4:44577070-44577089 | Msa0682650:CDS | 35.0% | |
| ! | TTCCATTGAAGGAGACATTT+TGG | - | chr4_4:44577075-44577094 | None:intergenic | 35.0% |
| ! | GCGTAAATTTGTTCCATTGA+AGG | - | chr4_4:44577086-44577105 | None:intergenic | 35.0% |
| CTGCTTTCAAAAACTGAAAC+TGG | - | chr4_4:44577127-44577146 | None:intergenic | 35.0% | |
| TGAAAGCAGTAGTTATTCCT+CGG | + | chr4_4:44577138-44577157 | Msa0682650:CDS | 35.0% | |
| AAAGTTGTAATTCTCAACCG+AGG | - | chr4_4:44577158-44577177 | None:intergenic | 35.0% | |
| ! | TCCTTTTCAAAAGCAGCAAT+CGG | + | chr4_4:44577267-44577286 | Msa0682650:CDS | 35.0% |
| TAGAAAATGTACGCATTGTG+AGG | + | chr4_4:44577411-44577430 | Msa0682650:CDS | 35.0% | |
| AAATTCTCACAAGAAGGTCT+TGG | + | chr4_4:44577576-44577595 | Msa0682650:CDS | 35.0% | |
| GTTAATCAGGAGACTGTTAA+AGG | + | chr4_4:44577613-44577632 | Msa0682650:CDS | 35.0% | |
| AAACCTTTCAGGAATTCTCT+AGG | + | chr4_4:44577660-44577679 | Msa0682650:CDS | 35.0% | |
| TATCCTAGAGAATTCCTGAA+AGG | - | chr4_4:44577666-44577685 | None:intergenic | 35.0% | |
| CTATAAGTAGGAATCGAACT+CGG | + | chr4_4:44577763-44577782 | Msa0682650:three_prime_UTR | 35.0% | |
| CTGCTAATATGAAGAACAGC+TGG | + | chr4_4:44575059-44575078 | Msa0682650:exon | 40.0% | |
| TCAGTTTCCACATCTTCAAG+TGG | - | chr4_4:44575154-44575173 | None:intergenic | 40.0% | |
| CTTGAAGATGTGGAAACTGA+TGG | + | chr4_4:44575154-44575173 | Msa0682650:CDS | 40.0% | |
| ACTGAGAAAACACCAAGAGA+TGG | - | chr4_4:44575223-44575242 | None:intergenic | 40.0% | |
| !!! | TCTTGGTGTTTTCTCAGTAC+CGG | + | chr4_4:44575225-44575244 | Msa0682650:CDS | 40.0% |
| AGAGTCCTGTTGTGTATGTT+TGG | + | chr4_4:44575570-44575589 | Msa0682650:intron | 40.0% | |
| AGCAACCAAACATACACAAC+AGG | - | chr4_4:44575578-44575597 | None:intergenic | 40.0% | |
| GTATGTTTGGTTGCTTGCAA+AGG | + | chr4_4:44575583-44575602 | Msa0682650:intron | 40.0% | |
| GAAAGTTACACCCGTTGAAA+AGG | - | chr4_4:44575632-44575651 | None:intergenic | 40.0% | |
| ! | ACTATGGCATTTTGTTGGTC+AGG | + | chr4_4:44575698-44575717 | Msa0682650:intron | 40.0% |
| !!! | TGTTGGTCAGGATTTTTAGC+GGG | + | chr4_4:44575710-44575729 | Msa0682650:intron | 40.0% |
| TCAAGCTTAAAAGATCGACG+AGG | + | chr4_4:44575800-44575819 | Msa0682650:CDS | 40.0% | |
| ! | ACGAGGACTAGTAAGTGAAA+GGG | + | chr4_4:44575817-44575836 | Msa0682650:intron | 40.0% |
| TACTCATACCTTAACGTGGA+GGG | + | chr4_4:44576284-44576303 | Msa0682650:intron | 40.0% | |
| CTCAGAAAGTGAGAAAGTTC+TGG | + | chr4_4:44576315-44576334 | Msa0682650:intron | 40.0% | |
| TTCATGTGTGTGCTTGAAGA+TGG | + | chr4_4:44576388-44576407 | Msa0682650:intron | 40.0% | |
| GTGTGCTTGAAGATGGTTTA+TGG | + | chr4_4:44576395-44576414 | Msa0682650:intron | 40.0% | |
| CTTGAAGATGGTTTATGGCT+AGG | + | chr4_4:44576400-44576419 | Msa0682650:intron | 40.0% | |
| TCAATCAACCTAGTCATTGG+CGG | - | chr4_4:44576517-44576536 | None:intergenic | 40.0% | |
| TATATGTTTAGAGACGGGAG+AGG | + | chr4_4:44576696-44576715 | Msa0682650:intron | 40.0% | |
| GACCATCATACAGTCATCAA+CGG | + | chr4_4:44576724-44576743 | Msa0682650:intron | 40.0% | |
| ATTATCAGATGCCATCCTAC+GGG | - | chr4_4:44576802-44576821 | None:intergenic | 40.0% | |
| !! | GGAATAGTTTTGCCATATGC+AGG | - | chr4_4:44577049-44577068 | None:intergenic | 40.0% |
| AAAAACTGAAACTGGGCTGT+AGG | - | chr4_4:44577119-44577138 | None:intergenic | 40.0% | |
| !!! | GATTGCTGCTTTTGAAAAGG+AGG | - | chr4_4:44577268-44577287 | None:intergenic | 40.0% |
| !!! | TCCGATTGCTGCTTTTGAAA+AGG | - | chr4_4:44577271-44577290 | None:intergenic | 40.0% |
| CATTATGCAGAGCCCAAAAA+AGG | + | chr4_4:44577311-44577330 | Msa0682650:CDS | 40.0% | |
| !!! | GTCTTTCCTTGGCCTTTTTT+GGG | - | chr4_4:44577326-44577345 | None:intergenic | 40.0% |
| !!! | TGTCTTTCCTTGGCCTTTTT+TGG | - | chr4_4:44577327-44577346 | None:intergenic | 40.0% |
| TGGGAGATATTGTCTTTCCT+TGG | - | chr4_4:44577337-44577356 | None:intergenic | 40.0% | |
| CTCAATGCTATTAGAGAGCT+GGG | - | chr4_4:44577356-44577375 | None:intergenic | 40.0% | |
| TCTCAATGCTATTAGAGAGC+TGG | - | chr4_4:44577357-44577376 | None:intergenic | 40.0% | |
| ! | AACTCCACAAGCATTGCATA+GGG | - | chr4_4:44577482-44577501 | None:intergenic | 40.0% |
| GTCGCCTATTTCCTGAATAT+CGG | + | chr4_4:44577515-44577534 | Msa0682650:CDS | 40.0% | |
| GCACTCAAATTCTCACAAGA+AGG | + | chr4_4:44577570-44577589 | Msa0682650:CDS | 40.0% | |
| ACAAGAAGGTCTTGGAAATC+AGG | + | chr4_4:44577584-44577603 | Msa0682650:CDS | 40.0% | |
| GGTCTTGGAAATCAGGAAAA+AGG | + | chr4_4:44577591-44577610 | Msa0682650:CDS | 40.0% | |
| ! | AGATGTGGAAACTGATGGTG+TGG | + | chr4_4:44575159-44575178 | Msa0682650:CDS | 45.0% |
| CACCTTGAAGAACCATCTCT+TGG | + | chr4_4:44575208-44575227 | Msa0682650:CDS | 45.0% | |
| CACCAAGAGATGGTTCTTCA+AGG | - | chr4_4:44575213-44575232 | None:intergenic | 45.0% | |
| !! | TCCTGTCTTTGCTGTTTGGA+TGG | + | chr4_4:44575326-44575345 | Msa0682650:intron | 45.0% |
| TCCATCCAAACAGCAAAGAC+AGG | - | chr4_4:44575330-44575349 | None:intergenic | 45.0% | |
| ! | GACGAGGACTAGTAAGTGAA+AGG | + | chr4_4:44575816-44575835 | Msa0682650:intron | 45.0% |
| ! | CGAGGACTAGTAAGTGAAAG+GGG | + | chr4_4:44575818-44575837 | Msa0682650:intron | 45.0% |
| GTACTCATACCTTAACGTGG+AGG | + | chr4_4:44576283-44576302 | Msa0682650:intron | 45.0% | |
| ACTCATACCTTAACGTGGAG+GGG | + | chr4_4:44576285-44576304 | Msa0682650:intron | 45.0% | |
| TGGTTTATGGCTAGGTAGCA+TGG | + | chr4_4:44576408-44576427 | Msa0682650:intron | 45.0% | |
| TTATCCTGGTTGTCAGCCAA+AGG | - | chr4_4:44576448-44576467 | None:intergenic | 45.0% | |
| !! | CACCGTTGATGACTGTATGA+TGG | - | chr4_4:44576729-44576748 | None:intergenic | 45.0% |
| !! | GTGATTTTCTCTGTGGACTG+TGG | + | chr4_4:44576853-44576872 | Msa0682650:intron | 45.0% |
| AAACAGCTTGGAAAGACTGC+TGG | + | chr4_4:44577022-44577041 | Msa0682650:intron | 45.0% | |
| AGGTAACTGAAACGCCACAA+TGG | + | chr4_4:44577431-44577450 | Msa0682650:CDS | 45.0% | |
| ! | CAAGCATTGCATAGGGTCTT+AGG | - | chr4_4:44577475-44577494 | None:intergenic | 45.0% |
| AAGACCCTATGCAATGCTTG+TGG | + | chr4_4:44577475-44577494 | Msa0682650:CDS | 45.0% | |
| ! | GAACTCCACAAGCATTGCAT+AGG | - | chr4_4:44577483-44577502 | None:intergenic | 45.0% |
| ATGCTTGTGGAGTTCGATAC+AGG | + | chr4_4:44577488-44577507 | Msa0682650:CDS | 45.0% | |
| CAGGCCGATATTCAGGAAAT+AGG | - | chr4_4:44577522-44577541 | None:intergenic | 45.0% | |
| ! | GCACTGATGCTTCAAAGGTT+GGG | - | chr4_4:44577552-44577571 | None:intergenic | 45.0% |
| ! | TGCACTGATGCTTCAAAGGT+TGG | - | chr4_4:44577553-44577572 | None:intergenic | 45.0% |
| ! | TGAGTGCACTGATGCTTCAA+AGG | - | chr4_4:44577557-44577576 | None:intergenic | 45.0% |
| ! | GTGTGAGTGTTGTAAACCCT+CGG | - | chr4_4:44577792-44577811 | None:intergenic | 45.0% |
| !!! | GATAATATTTTTTTAAAATA+AGG | + | chr4_4:44576658-44576677 | Msa0682650:intron | 5.0% |
| GGTGTGTCGGATGAGATTCT+TGG | + | chr4_4:44575103-44575122 | Msa0682650:CDS | 50.0% | |
| ! | GGAAACTGATGGTGTGGAAC+AGG | + | chr4_4:44575165-44575184 | Msa0682650:CDS | 50.0% |
| ! | CTGATGGTGTGGAACAGGAT+TGG | + | chr4_4:44575170-44575189 | Msa0682650:CDS | 50.0% |
| !! | CTGCTCCTGTCTTTGCTGTT+TGG | + | chr4_4:44575322-44575341 | Msa0682650:intron | 50.0% |
| CATTCCTTTGGCTGACAACC+AGG | + | chr4_4:44576441-44576460 | Msa0682650:intron | 50.0% | |
| AAGACTGCTGGACCTGCATA+TGG | + | chr4_4:44577034-44577053 | Msa0682650:CDS | 50.0% | |
| CTGAAACTGGGCTGTAGGTT+CGG | - | chr4_4:44577114-44577133 | None:intergenic | 50.0% | |
| TTACCACGAGGACGCTTTGT+CGG | - | chr4_4:44577196-44577215 | None:intergenic | 50.0% | |
| CAATCGGATAAACAGCGTGC+TGG | + | chr4_4:44577283-44577302 | Msa0682650:CDS | 50.0% | |
| TGAAACGCCACAATGGAGAG+AGG | + | chr4_4:44577438-44577457 | Msa0682650:CDS | 50.0% | |
| GAAACGCCACAATGGAGAGA+GGG | + | chr4_4:44577439-44577458 | Msa0682650:CDS | 50.0% | |
| AAACGCCACAATGGAGAGAG+GGG | + | chr4_4:44577440-44577459 | Msa0682650:CDS | 50.0% | |
| CATAGGGTCTTAGGACCCTT+AGG | - | chr4_4:44577466-44577485 | None:intergenic | 50.0% | |
| TGTGGAGTTCGATACAGGTC+TGG | + | chr4_4:44577493-44577512 | Msa0682650:CDS | 50.0% | |
| GAATCGAACTCGGTATCCGA+GGG | + | chr4_4:44577773-44577792 | Msa0682650:three_prime_UTR | 50.0% | |
| ! | GTACCGGCATTTGAGCTACG+CGG | + | chr4_4:44575241-44575260 | Msa0682650:CDS | 55.0% |
| CGCAATACCCCTCCACGTTA+AGG | - | chr4_4:44576295-44576314 | None:intergenic | 55.0% | |
| CTGTCATGCCGCCAATGACT+AGG | + | chr4_4:44576506-44576525 | Msa0682650:intron | 55.0% | |
| TACCACGAGGACGCTTTGTC+GGG | - | chr4_4:44577195-44577214 | None:intergenic | 55.0% | |
| AGAGCCTGTCGAAGCTTGAG+AGG | - | chr4_4:44577228-44577247 | None:intergenic | 55.0% | |
| GCAGAGCCCAAAAAAGGCCA+AGG | + | chr4_4:44577317-44577336 | Msa0682650:CDS | 55.0% | |
| TTAGGCCCCTCTCTCCATTG+TGG | - | chr4_4:44577448-44577467 | None:intergenic | 55.0% | |
| ACAATGGAGAGAGGGGCCTA+AGG | + | chr4_4:44577447-44577466 | Msa0682650:CDS | 55.0% | |
| CAATGGAGAGAGGGGCCTAA+GGG | + | chr4_4:44577448-44577467 | Msa0682650:CDS | 55.0% | |
| CTAGCTGCAGGCCGATATTC+AGG | - | chr4_4:44577529-44577548 | None:intergenic | 55.0% | |
| !! | TCAAAGGTTGGGCTAGCTGC+AGG | - | chr4_4:44577541-44577560 | None:intergenic | 55.0% |
| GGAATCGAACTCGGTATCCG+AGG | + | chr4_4:44577772-44577791 | Msa0682650:three_prime_UTR | 55.0% | |
| TCGCCGCGTAGCTCAAATGC+CGG | - | chr4_4:44575247-44575266 | None:intergenic | 60.0% | |
| ATTCGCCAAAGCGCACCCGT+AGG | + | chr4_4:44576784-44576803 | Msa0682650:intron | 60.0% | |
| GGACGCTTTGTCGGGATCAC+TGG | - | chr4_4:44577187-44577206 | None:intergenic | 60.0% | |
| ! | ATCCCGACAAAGCGTCCTCG+TGG | + | chr4_4:44577190-44577209 | Msa0682650:CDS | 60.0% |
| AGCGTCCTCGTGGTAAACGC+CGG | + | chr4_4:44577200-44577219 | Msa0682650:CDS | 60.0% | |
| ! | TGTCGAAGCTTGAGAGGCGC+CGG | - | chr4_4:44577222-44577241 | None:intergenic | 60.0% |
| GCCAAAGCGCACCCGTAGGA+TGG | + | chr4_4:44576788-44576807 | Msa0682650:intron | 65.0% | |
| GCCATCCTACGGGTGCGCTT+TGG | - | chr4_4:44576792-44576811 | None:intergenic | 65.0% | |
| GGCGCCTCTCAAGCTTCGAC+AGG | + | chr4_4:44577221-44577240 | Msa0682650:CDS | 65.0% | |
| !! | AGGCGCCGGCGTTTACCACG+AGG | - | chr4_4:44577208-44577227 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44575044 | 44577894 | 44575044 | ID=Msa0682650;Name=Msa0682650 |
| chr4_4 | mRNA | 44575044 | 44577894 | 44575044 | ID=Msa0682650-mRNA-1;Parent=Msa0682650;Name=Msa0682650-mRNA-1;_AED=0.26;_eAED=0.26;_QI=23|1|1|1|1|1|3|213|320 |
| chr4_4 | exon | 44575044 | 44575312 | 44575044 | ID=Msa0682650-mRNA-1:exon:10742;Parent=Msa0682650-mRNA-1 |
| chr4_4 | exon | 44575764 | 44575826 | 44575764 | ID=Msa0682650-mRNA-1:exon:10743;Parent=Msa0682650-mRNA-1 |
| chr4_4 | exon | 44577028 | 44577894 | 44577028 | ID=Msa0682650-mRNA-1:exon:10744;Parent=Msa0682650-mRNA-1 |
| chr4_4 | five_prime_UTR | 44575044 | 44575066 | 44575044 | ID=Msa0682650-mRNA-1:five_prime_utr;Parent=Msa0682650-mRNA-1 |
| chr4_4 | CDS | 44575067 | 44575312 | 44575067 | ID=Msa0682650-mRNA-1:cds;Parent=Msa0682650-mRNA-1 |
| chr4_4 | CDS | 44575764 | 44575826 | 44575764 | ID=Msa0682650-mRNA-1:cds;Parent=Msa0682650-mRNA-1 |
| chr4_4 | CDS | 44577028 | 44577681 | 44577028 | ID=Msa0682650-mRNA-1:cds;Parent=Msa0682650-mRNA-1 |
| chr4_4 | three_prime_UTR | 44577682 | 44577894 | 44577682 | ID=Msa0682650-mRNA-1:three_prime_utr;Parent=Msa0682650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
