Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602780 | XP_013468295.1 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 5.25e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602780 | sp|Q9M5L0|RL35_EUPES | 90.756 | 119 | 11 | 0 | 3 | 121 | 4 | 122 | 1.87e-70 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602780 | I3T617 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 2.51e-72 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0602780 | Msa1163530 | 0.850394 | 1.747275e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602780 | MtrunA17_Chr1g0182051 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 4.83e-76 | 221 |
| Msa0602780 | MtrunA17_Chr4g0030641 | 94.215 | 121 | 7 | 0 | 2 | 122 | 3 | 123 | 8.74e-76 | 220 |
| Msa0602780 | MtrunA17_Chr1g0212921 | 90.000 | 120 | 12 | 0 | 3 | 122 | 2 | 121 | 5.26e-72 | 210 |
| Msa0602780 | MtrunA17_Chr4g0036351 | 90.756 | 119 | 11 | 0 | 4 | 122 | 3 | 121 | 3.79e-71 | 208 |
| Msa0602780 | MtrunA17_Chr7g0249361 | 85.000 | 120 | 18 | 0 | 3 | 122 | 49 | 168 | 6.96e-66 | 196 |
| Msa0602780 | MtrunA17_Chr1g0206641 | 87.179 | 39 | 5 | 0 | 10 | 48 | 2 | 40 | 1.10e-15 | 65.9 |
| Msa0602780 | MtrunA17_Chr5g0419591 | 82.353 | 34 | 6 | 0 | 66 | 99 | 2 | 35 | 1.12e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602780 | AT2G39390.1 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 5.66e-68 | 201 |
| Msa0602780 | AT3G09500.1 | 85.714 | 119 | 17 | 0 | 3 | 121 | 4 | 122 | 3.50e-67 | 199 |
| Msa0602780 | AT5G02610.1 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 3.57e-67 | 198 |
| Msa0602780 | AT3G55170.5 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| Msa0602780 | AT3G55170.2 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| Msa0602780 | AT3G55170.1 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.18e-65 | 195 |
| Msa0602780 | AT5G02610.2 | 72.535 | 142 | 16 | 1 | 3 | 121 | 4 | 145 | 2.01e-61 | 185 |
| Msa0602780 | AT3G55170.4 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.32e-50 | 156 |
| Msa0602780 | AT3G55170.3 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.32e-50 | 156 |
Find 39 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATTGAGGGAAGTTTATA+AGG | 0.253311 | 4_2:-46782300 | Msa0602780:CDS |
| GACAATGTTCTAGAAATATT+TGG | 0.270088 | 4_2:-46780889 | Msa0602780:three_prime_UTR |
| GGTCCAACATTACGCCTTAA+TGG | 0.287059 | 4_2:+46780944 | None:intergenic |
| TACATCTTGGAAAGCTTGTT+TGG | 0.300449 | 4_2:+46782572 | None:intergenic |
| ATATGCGACTATTTGTATAT+TGG | 0.314859 | 4_2:+46780719 | None:intergenic |
| AGCATTAAATAATCTGAAAC+TGG | 0.347111 | 4_2:+46780772 | None:intergenic |
| TTTAACTTATCTTCATGAAA+TGG | 0.348353 | 4_2:-46780836 | Msa0602780:three_prime_UTR |
| ACATCTTGGAAAGCTTGTTT+GGG | 0.366421 | 4_2:+46782573 | None:intergenic |
| CATGAATTTCGATTTGTTGT+TGG | 0.373914 | 4_2:-46780911 | Msa0602780:three_prime_UTR |
| GGGAAAGAAGTACTTGCCTT+TGG | 0.396900 | 4_2:-46782279 | Msa0602780:CDS |
| TAGCATGAATGAGTGACTTA+TGG | 0.401589 | 4_2:-46780676 | Msa0602780:three_prime_UTR |
| AGTGAGAAAGTATGCCATTA+AGG | 0.406198 | 4_2:-46780958 | Msa0602780:CDS |
| TTTGAACGCAATAGCTATCA+AGG | 0.421455 | 4_2:-46782699 | Msa0602780:intron |
| GCGATTCAAGATCTGCGAAA+TGG | 0.425071 | 4_2:-46782818 | Msa0602780:exon |
| TCGAAATTCATGCAAAAGAA+AGG | 0.425679 | 4_2:+46780922 | None:intergenic |
| CGATTCAAGATCTGCGAAAT+GGG | 0.431683 | 4_2:-46782817 | Msa0602780:intron |
| TTGGATGCAGCAAGGTTGTT+CGG | 0.445039 | 4_2:-46782370 | Msa0602780:intron |
| GAAGATAAGTTAAACTCAAA+AGG | 0.456428 | 4_2:+46780845 | None:intergenic |
| GCATTGAGGGAAGTTTATAA+GGG | 0.472413 | 4_2:-46782299 | Msa0602780:CDS |
| GAATGAGTGACTTATGGTTT+GGG | 0.478655 | 4_2:-46780670 | Msa0602780:three_prime_UTR |
| GAAGTCACGTTGAAAACATA+GGG | 0.482415 | 4_2:+46780624 | None:intergenic |
| TGAATGAGTGACTTATGGTT+TGG | 0.486189 | 4_2:-46780671 | Msa0602780:three_prime_UTR |
| CTTCGCGTTGCGAAAGTCAC+CGG | 0.488670 | 4_2:-46782602 | Msa0602780:CDS |
| AAGCTTGTTTGGGGCACCGC+CGG | 0.495153 | 4_2:+46782583 | None:intergenic |
| GAAACAAAAGACAGCATTGA+GGG | 0.506620 | 4_2:-46782312 | Msa0602780:CDS |
| CGAAATTCATGCAAAAGAAA+GGG | 0.512267 | 4_2:+46780923 | None:intergenic |
| AAGACGCCTCACTAAGCATC+AGG | 0.512300 | 4_2:-46782225 | Msa0602780:intron |
| TTAATGGCATACTTTCTCAC+TGG | 0.517469 | 4_2:+46780960 | None:intergenic |
| AGAAGTCACGTTGAAAACAT+AGG | 0.522548 | 4_2:+46780623 | None:intergenic |
| ATCGCCGCGAGAAAACTTGT+TGG | 0.536369 | 4_2:+46782836 | None:intergenic |
| TAATGGCATACTTTCTCACT+GGG | 0.582481 | 4_2:+46780961 | None:intergenic |
| GACAGAGCGTGAGAAGAAGA+AGG | 0.584517 | 4_2:-46780994 | Msa0602780:CDS |
| ATGCCATTAAGGCGTAATGT+TGG | 0.585342 | 4_2:-46780947 | Msa0602780:exon |
| CATCTTGGAAAGCTTGTTTG+GGG | 0.612959 | 4_2:+46782574 | None:intergenic |
| CTATCAAGGTTTATGAGCTG+AGG | 0.615557 | 4_2:-46782685 | Msa0602780:CDS |
| CGCGTTGCGAAAGTCACCGG+CGG | 0.627530 | 4_2:-46782599 | Msa0602780:CDS |
| AGAAACAAAAGACAGCATTG+AGG | 0.664403 | 4_2:-46782313 | Msa0602780:CDS |
| CATGTACCTGATGCTTAGTG+AGG | 0.666111 | 4_2:+46782219 | None:intergenic |
| AAGTCACGTTGAAAACATAG+GGG | 0.718692 | 4_2:+46780625 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGAGAATAGAATAA+AGG | + | chr4_2:46780700-46780719 | None:intergenic | 15.0% |
| !!! | TGAATTAATTTGATGAAATT+CGG | - | chr4_2:46781333-46781352 | Msa0602780:intron | 15.0% |
| !! | ATTATGAAAAAATGAGTAAA+TGG | + | chr4_2:46781991-46782010 | None:intergenic | 15.0% |
| !!! | TTTTTTCATAATTGTTTATG+TGG | - | chr4_2:46781999-46782018 | Msa0602780:intron | 15.0% |
| !! | TTTGTTACAATTATAATTGT+GGG | - | chr4_2:46782052-46782071 | Msa0602780:intron | 15.0% |
| !!! | TCATCTATAGTAATTTTGAT+TGG | + | chr4_2:46781034-46781053 | None:intergenic | 20.0% |
| !!! | TGATTGTTTTTGTTATTGTT+TGG | - | chr4_2:46781086-46781105 | Msa0602780:intron | 20.0% |
| !!! | TTAATAGTTTGTAAAGTTTG+TGG | - | chr4_2:46781417-46781436 | Msa0602780:intron | 20.0% |
| !!! | ATAATGATTTTCATGATGTA+TGG | - | chr4_2:46781472-46781491 | Msa0602780:intron | 20.0% |
| !! | CTTTGTTACAATTATAATTG+TGG | - | chr4_2:46782051-46782070 | Msa0602780:intron | 20.0% |
| !! | TTGTTACAATTATAATTGTG+GGG | - | chr4_2:46782053-46782072 | Msa0602780:intron | 20.0% |
| !!! | AATACTTCTTATGATGTTTT+CGG | - | chr4_2:46782344-46782363 | Msa0602780:CDS | 20.0% |
| !! | TATAAGCTTTCTTCATAAAA+TGG | - | chr4_2:46782417-46782436 | Msa0602780:intron | 20.0% |
| !!! | TTTAACTTATCTTCATGAAA+TGG | - | chr4_2:46782639-46782658 | Msa0602780:CDS | 20.0% |
| ! | TAGAGAATAGAATAAAGGAT+TGG | + | chr4_2:46780695-46780714 | None:intergenic | 25.0% |
| ! | AATTAAGTGCAATAGAATAG+CGG | + | chr4_2:46780937-46780956 | None:intergenic | 25.0% |
| ! | ATGAAATTCGGACTTATATT+TGG | - | chr4_2:46781345-46781364 | Msa0602780:intron | 25.0% |
| !! | AAGCTATCTTTGTAGATTTT+TGG | - | chr4_2:46781543-46781562 | Msa0602780:intron | 25.0% |
| !! | AGCTATCTTTGTAGATTTTT+GGG | - | chr4_2:46781544-46781563 | Msa0602780:intron | 25.0% |
| ! | TGAAAAAATGAGTAAATGGT+TGG | + | chr4_2:46781987-46782006 | None:intergenic | 25.0% |
| !! | ATTTTATCAATGTGCCTTAT+TGG | - | chr4_2:46782122-46782141 | Msa0602780:intron | 25.0% |
| !!! | GACAATGTTCTAGAAATATT+TGG | - | chr4_2:46782586-46782605 | Msa0602780:CDS | 25.0% |
| ! | GAAGATAAGTTAAACTCAAA+AGG | + | chr4_2:46782633-46782652 | None:intergenic | 25.0% |
| !! | AGCATTAAATAATCTGAAAC+TGG | + | chr4_2:46782706-46782725 | None:intergenic | 25.0% |
| ! | ATATGCGACTATTTGTATAT+TGG | + | chr4_2:46782759-46782778 | None:intergenic | 25.0% |
| ATGAGTACAAACAATGATGT+TGG | + | chr4_2:46780727-46780746 | None:intergenic | 30.0% | |
| TTGCGTTCAAAAAAGAAGAA+AGG | + | chr4_2:46780767-46780786 | None:intergenic | 30.0% | |
| !!! | CTAATAGCTCTAGTCTTTTT+GGG | + | chr4_2:46781230-46781249 | None:intergenic | 30.0% |
| !!! | TCTAATAGCTCTAGTCTTTT+TGG | + | chr4_2:46781231-46781250 | None:intergenic | 30.0% |
| GTAAGTGTTTCTTTCTATGA+AGG | - | chr4_2:46781294-46781313 | Msa0602780:intron | 30.0% | |
| GACTTATATTTGGTATGCTT+TGG | - | chr4_2:46781355-46781374 | Msa0602780:intron | 30.0% | |
| TTCTGCTCAATTATTGTTCT+AGG | - | chr4_2:46781507-46781526 | Msa0602780:intron | 30.0% | |
| TCTGCTCAATTATTGTTCTA+GGG | - | chr4_2:46781508-46781527 | Msa0602780:intron | 30.0% | |
| ATTGTGGAATAGAAGAATAG+TGG | - | chr4_2:46781735-46781754 | Msa0602780:intron | 30.0% | |
| GTTTATGTGGACAATACTTA+TGG | - | chr4_2:46782012-46782031 | Msa0602780:intron | 30.0% | |
| GTGATATATTTGCCTCTTAT+CGG | - | chr4_2:46782152-46782171 | Msa0602780:intron | 30.0% | |
| TGATATATTTGCCTCTTATC+GGG | - | chr4_2:46782153-46782172 | Msa0602780:intron | 30.0% | |
| AAAACATGTATGTATGTGCT+CGG | + | chr4_2:46782269-46782288 | None:intergenic | 30.0% | |
| !!! | ACATACATGTTTTGACTTCT+AGG | - | chr4_2:46782276-46782295 | Msa0602780:CDS | 30.0% |
| !!! | CATACATGTTTTGACTTCTA+GGG | - | chr4_2:46782277-46782296 | Msa0602780:CDS | 30.0% |
| AATGGCTGAATGAATTTACT+TGG | - | chr4_2:46782435-46782454 | Msa0602780:intron | 30.0% | |
| CGAAATTCATGCAAAAGAAA+GGG | + | chr4_2:46782555-46782574 | None:intergenic | 30.0% | |
| TCGAAATTCATGCAAAAGAA+AGG | + | chr4_2:46782556-46782575 | None:intergenic | 30.0% | |
| !! | CATGAATTTCGATTTGTTGT+TGG | - | chr4_2:46782564-46782583 | Msa0602780:intron | 30.0% |
| TTTGAACGCAATAGCTATCA+AGG | - | chr4_2:46780776-46780795 | Msa0602780:three_prime_UTR | 35.0% | |
| ! | ACATCTTGGAAAGCTTGTTT+GGG | + | chr4_2:46780905-46780924 | None:intergenic | 35.0% |
| ! | TACATCTTGGAAAGCTTGTT+TGG | + | chr4_2:46780906-46780925 | None:intergenic | 35.0% |
| AGAAACAAAAGACAGCATTG+AGG | - | chr4_2:46781162-46781181 | Msa0602780:intron | 35.0% | |
| ! | GAAACAAAAGACAGCATTGA+GGG | - | chr4_2:46781163-46781182 | Msa0602780:intron | 35.0% |
| ! | AGCATTGAGGGAAGTTTATA+AGG | - | chr4_2:46781175-46781194 | Msa0602780:intron | 35.0% |
| GCATTGAGGGAAGTTTATAA+GGG | - | chr4_2:46781176-46781195 | Msa0602780:intron | 35.0% | |
| !! | CTTAATCTTTGACTTGCTGA+AGG | + | chr4_2:46781914-46781933 | None:intergenic | 35.0% |
| AGATTAAGCTTGAACTTGCA+TGG | - | chr4_2:46781926-46781945 | Msa0602780:intron | 35.0% | |
| TTTAATGGTACCACATGTTG+TGG | + | chr4_2:46781958-46781977 | None:intergenic | 35.0% | |
| ACATGTGGTACCATTAAATG+AGG | - | chr4_2:46781960-46781979 | Msa0602780:intron | 35.0% | |
| ! | AATGGTTGGTCCTCATTTAA+TGG | + | chr4_2:46781973-46781992 | None:intergenic | 35.0% |
| ACAATTATAATTGTGGGGAC+TGG | - | chr4_2:46782058-46782077 | Msa0602780:intron | 35.0% | |
| CAATTATAATTGTGGGGACT+GGG | - | chr4_2:46782059-46782078 | Msa0602780:intron | 35.0% | |
| AATTATAATTGTGGGGACTG+GGG | - | chr4_2:46782060-46782079 | Msa0602780:intron | 35.0% | |
| ATATCACCTATGCTCCAATA+AGG | + | chr4_2:46782139-46782158 | None:intergenic | 35.0% | |
| AAGTTAAAACTCCCGATAAG+AGG | + | chr4_2:46782167-46782186 | None:intergenic | 35.0% | |
| AAACATGTATGTATGTGCTC+GGG | + | chr4_2:46782268-46782287 | None:intergenic | 35.0% | |
| ACAACTTCACCAACAAAGAT+TGG | + | chr4_2:46782303-46782322 | None:intergenic | 35.0% | |
| CAACCATTCATGAAAAGTCA+AGG | + | chr4_2:46782385-46782404 | None:intergenic | 35.0% | |
| TAATGGCATACTTTCTCACT+GGG | + | chr4_2:46782517-46782536 | None:intergenic | 35.0% | |
| TTAATGGCATACTTTCTCAC+TGG | + | chr4_2:46782518-46782537 | None:intergenic | 35.0% | |
| ! | AGTGAGAAAGTATGCCATTA+AGG | - | chr4_2:46782517-46782536 | Msa0602780:intron | 35.0% |
| TAGCATGAATGAGTGACTTA+TGG | - | chr4_2:46782799-46782818 | Msa0602780:intron | 35.0% | |
| TGAATGAGTGACTTATGGTT+TGG | - | chr4_2:46782804-46782823 | Msa0602780:intron | 35.0% | |
| GAATGAGTGACTTATGGTTT+GGG | - | chr4_2:46782805-46782824 | Msa0602780:intron | 35.0% | |
| AAGTCACGTTGAAAACATAG+GGG | + | chr4_2:46782853-46782872 | None:intergenic | 35.0% | |
| GAAGTCACGTTGAAAACATA+GGG | + | chr4_2:46782854-46782873 | None:intergenic | 35.0% | |
| AGAAGTCACGTTGAAAACAT+AGG | + | chr4_2:46782855-46782874 | None:intergenic | 35.0% | |
| ! | TCTACCAACAAGTTTTCTCG+CGG | - | chr4_2:46780635-46780654 | Msa0602780:three_prime_UTR | 40.0% |
| CGATTCAAGATCTGCGAAAT+GGG | - | chr4_2:46780658-46780677 | Msa0602780:three_prime_UTR | 40.0% | |
| CTATCAAGGTTTATGAGCTG+AGG | - | chr4_2:46780790-46780809 | Msa0602780:three_prime_UTR | 40.0% | |
| ! | CATCTTGGAAAGCTTGTTTG+GGG | + | chr4_2:46780904-46780923 | None:intergenic | 40.0% |
| AGCGGAAAATGCATACATCT+TGG | + | chr4_2:46780919-46780938 | None:intergenic | 40.0% | |
| GTTATTGTTTGGATGCAGCA+AGG | - | chr4_2:46781097-46781116 | Msa0602780:intron | 40.0% | |
| !!! | TAGCTCTAGTCTTTTTGGGA+CGG | + | chr4_2:46781226-46781245 | None:intergenic | 40.0% |
| GACAACACTTTGTACTACAG+CGG | + | chr4_2:46781635-46781654 | None:intergenic | 40.0% | |
| ATATTGTCCATCGCAGATGA+CGG | + | chr4_2:46781717-46781736 | None:intergenic | 40.0% | |
| ATCTGCGATGGACAATATTG+TGG | - | chr4_2:46781719-46781738 | Msa0602780:intron | 40.0% | |
| TGGAAGTAATAGAGGACTTC+GGG | + | chr4_2:46781793-46781812 | None:intergenic | 40.0% | |
| GTGGAAGTAATAGAGGACTT+CGG | + | chr4_2:46781794-46781813 | None:intergenic | 40.0% | |
| !! | TTAGGGAAGTGTTTGTCTCA+AGG | + | chr4_2:46781849-46781868 | None:intergenic | 40.0% |
| !! | TTTGACTTGCTGAAGGAATG+TGG | + | chr4_2:46781907-46781926 | None:intergenic | 40.0% |
| AGCTTGAACTTGCATGGTTT+AGG | - | chr4_2:46781932-46781951 | Msa0602780:intron | 40.0% | |
| ATTATAATTGTGGGGACTGG+GGG | - | chr4_2:46782061-46782080 | Msa0602780:intron | 40.0% | |
| ! | GTTGTAGAGTTTTGCTGCAA+TGG | - | chr4_2:46782095-46782114 | Msa0602780:intron | 40.0% |
| ! | AATGTGCCTTATTGGAGCAT+AGG | - | chr4_2:46782130-46782149 | Msa0602780:intron | 40.0% |
| ! | GTGCCTTGACTTTTCATGAA+TGG | - | chr4_2:46782379-46782398 | Msa0602780:intron | 40.0% |
| ATGCCATTAAGGCGTAATGT+TGG | - | chr4_2:46782528-46782547 | Msa0602780:intron | 40.0% | |
| GCGATTCAAGATCTGCGAAA+TGG | - | chr4_2:46780657-46780676 | Msa0602780:three_prime_UTR | 45.0% | |
| TTGGATGCAGCAAGGTTGTT+CGG | - | chr4_2:46781105-46781124 | Msa0602780:intron | 45.0% | |
| !! | GGGAAAGAAGTACTTGCCTT+TGG | - | chr4_2:46781196-46781215 | Msa0602780:intron | 45.0% |
| !!! | TTTTTGGGACGGAGATCCAA+AGG | + | chr4_2:46781215-46781234 | None:intergenic | 45.0% |
| CATGTACCTGATGCTTAGTG+AGG | + | chr4_2:46781259-46781278 | None:intergenic | 45.0% | |
| GCTATAGCGTGGTAGTATAG+CGG | - | chr4_2:46781670-46781689 | Msa0602780:intron | 45.0% | |
| !! | TCGCAGATGACGGAAAATAG+CGG | + | chr4_2:46781707-46781726 | None:intergenic | 45.0% |
| ! | CTATTTTCCGTCATCTGCGA+TGG | - | chr4_2:46781707-46781726 | Msa0602780:intron | 45.0% |
| AAGTAATAGAGGACTTCGGG+AGG | + | chr4_2:46781790-46781809 | None:intergenic | 45.0% | |
| GGAGCAAGTGGAAGTAATAG+AGG | + | chr4_2:46781801-46781820 | None:intergenic | 45.0% | |
| ! | GAAGTGTTTGTCTCAAGGAG+GGG | + | chr4_2:46781844-46781863 | None:intergenic | 45.0% |
| !! | GGAAGTGTTTGTCTCAAGGA+GGG | + | chr4_2:46781845-46781864 | None:intergenic | 45.0% |
| GACAAACACTTCCCTAAGCT+TGG | - | chr4_2:46781852-46781871 | Msa0602780:intron | 45.0% | |
| ATGGTTTAGGCCACAACATG+TGG | - | chr4_2:46781945-46781964 | Msa0602780:intron | 45.0% | |
| !! | CTTCTAGGGCCAATCTTTGT+TGG | - | chr4_2:46782291-46782310 | Msa0602780:CDS | 45.0% |
| GGTCCAACATTACGCCTTAA+TGG | + | chr4_2:46782534-46782553 | None:intergenic | 45.0% | |
| ATCGCCGCGAGAAAACTTGT+TGG | + | chr4_2:46780642-46780661 | None:intergenic | 50.0% | |
| AAGACGCCTCACTAAGCATC+AGG | - | chr4_2:46781250-46781269 | Msa0602780:intron | 50.0% | |
| ACTACAGCGGATAGCAGAAC+AGG | + | chr4_2:46781622-46781641 | None:intergenic | 50.0% | |
| AGTGTTGTCAGCCGCTATTG+CGG | - | chr4_2:46781646-46781665 | Msa0602780:intron | 50.0% | |
| ACGCTATAGCACCGCAATAG+CGG | + | chr4_2:46781660-46781679 | None:intergenic | 50.0% | |
| TAGAGGACTTCGGGAGGAAA+GGG | + | chr4_2:46781784-46781803 | None:intergenic | 50.0% | |
| ATAGAGGACTTCGGGAGGAA+AGG | + | chr4_2:46781785-46781804 | None:intergenic | 50.0% | |
| GGAAAAGAGGAAGGAGCAAG+TGG | + | chr4_2:46781813-46781832 | None:intergenic | 50.0% | |
| TGTTTGTCTCAAGGAGGGGA+GGG | + | chr4_2:46781840-46781859 | None:intergenic | 50.0% | |
| !! | GGGAAGTGTTTGTCTCAAGG+AGG | + | chr4_2:46781846-46781865 | None:intergenic | 50.0% |
| ACTTCCCTAAGCTTGGAACG+TGG | - | chr4_2:46781859-46781878 | Msa0602780:intron | 50.0% | |
| TCTGCCACGTTCCAAGCTTA+GGG | + | chr4_2:46781866-46781885 | None:intergenic | 50.0% | |
| ATCTGCCACGTTCCAAGCTT+AGG | + | chr4_2:46781867-46781886 | None:intergenic | 50.0% | |
| GACAGAGCGTGAGAAGAAGA+AGG | - | chr4_2:46782481-46782500 | Msa0602780:intron | 50.0% | |
| CTTCGCGTTGCGAAAGTCAC+CGG | - | chr4_2:46780873-46780892 | Msa0602780:three_prime_UTR | 55.0% | |
| !! | GCTATTGCGGTGCTATAGCG+TGG | - | chr4_2:46781659-46781678 | Msa0602780:intron | 55.0% |
| TTCGGGAGGAAAGGGCTTTG+CGG | + | chr4_2:46781776-46781795 | None:intergenic | 55.0% | |
| GAGGGCTGTGGAAAAGAGGA+AGG | + | chr4_2:46781822-46781841 | None:intergenic | 55.0% | |
| GTGTTTGTCTCAAGGAGGGG+AGG | + | chr4_2:46781841-46781860 | None:intergenic | 55.0% | |
| TTGTGGGGACTGGGGGAAAT+TGG | - | chr4_2:46782068-46782087 | Msa0602780:intron | 55.0% | |
| !! | AAGCTTGTTTGGGGCACCGC+CGG | + | chr4_2:46780895-46780914 | None:intergenic | 60.0% |
| AGGGGAGGGCTGTGGAAAAG+AGG | + | chr4_2:46781826-46781845 | None:intergenic | 60.0% | |
| CGCGTTGCGAAAGTCACCGG+CGG | - | chr4_2:46780876-46780895 | Msa0602780:three_prime_UTR | 65.0% | |
| TCTCAAGGAGGGGAGGGCTG+TGG | + | chr4_2:46781834-46781853 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 46780621 | 46782876 | 46780621 | ID=Msa0602780;Name=Msa0602780 |
| chr4_2 | mRNA | 46780621 | 46782876 | 46780621 | ID=Msa0602780-mRNA-1;Parent=Msa0602780;Name=Msa0602780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=55|1|1|1|1|1|4|332|122 |
| chr4_2 | exon | 46780621 | 46781027 | 46780621 | ID=Msa0602780-mRNA-1:exon:10667;Parent=Msa0602780-mRNA-1 |
| chr4_2 | exon | 46782226 | 46782382 | 46782226 | ID=Msa0602780-mRNA-1:exon:10666;Parent=Msa0602780-mRNA-1 |
| chr4_2 | exon | 46782575 | 46782707 | 46782575 | ID=Msa0602780-mRNA-1:exon:10665;Parent=Msa0602780-mRNA-1 |
| chr4_2 | exon | 46782818 | 46782876 | 46782818 | ID=Msa0602780-mRNA-1:exon:10664;Parent=Msa0602780-mRNA-1 |
| chr4_2 | five_prime_UTR | 46782822 | 46782876 | 46782822 | ID=Msa0602780-mRNA-1:five_prime_utr;Parent=Msa0602780-mRNA-1 |
| chr4_2 | CDS | 46782818 | 46782821 | 46782818 | ID=Msa0602780-mRNA-1:cds;Parent=Msa0602780-mRNA-1 |
| chr4_2 | CDS | 46782575 | 46782707 | 46782575 | ID=Msa0602780-mRNA-1:cds;Parent=Msa0602780-mRNA-1 |
| chr4_2 | CDS | 46782226 | 46782382 | 46782226 | ID=Msa0602780-mRNA-1:cds;Parent=Msa0602780-mRNA-1 |
| chr4_2 | CDS | 46780953 | 46781027 | 46780953 | ID=Msa0602780-mRNA-1:cds;Parent=Msa0602780-mRNA-1 |
| chr4_2 | three_prime_UTR | 46780621 | 46780952 | 46780621 | ID=Msa0602780-mRNA-1:three_prime_utr;Parent=Msa0602780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
