Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163530 | XP_013441621.1 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 2.21e-75 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163530 | sp|Q9C912|R35A3_ARATH | 91.964 | 112 | 9 | 0 | 1 | 112 | 1 | 112 | 6.80e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163530 | I3T9M0 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.05e-75 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1163530 | 0.821075 | 4.895181e-53 | -8.615850e-47 |
| Msa0032780 | Msa1163530 | 0.806676 | 7.327948e-50 | -8.615850e-47 |
| Msa0602780 | Msa1163530 | 0.850394 | 1.747275e-60 | -8.615850e-47 |
| Msa0140850 | Msa1163530 | 0.808946 | 2.411611e-50 | -8.615850e-47 |
| Msa0172900 | Msa1163530 | 0.804078 | 2.567592e-49 | -8.615850e-47 |
| Msa0425410 | Msa1163530 | 0.804362 | 2.240119e-49 | -8.615850e-47 |
| Msa0436720 | Msa1163530 | 0.803213 | 3.881518e-49 | -8.615850e-47 |
| Msa0481850 | Msa1163530 | 0.801340 | 9.431825e-49 | -8.615850e-47 |
| Msa1080350 | Msa1163530 | 0.806772 | 6.994617e-50 | -8.615850e-47 |
| Msa0336010 | Msa1163530 | 0.815712 | 8.030957e-52 | -8.615850e-47 |
| Msa1125860 | Msa1163530 | 0.816076 | 6.661346e-52 | -8.615850e-47 |
| Msa1126060 | Msa1163530 | 0.808303 | 3.309200e-50 | -8.615850e-47 |
| Msa1163530 | Msa1165580 | 0.832128 | 1.127810e-55 | -8.615850e-47 |
| Msa1163530 | Msa1215820 | 0.821549 | 3.805992e-53 | -8.615850e-47 |
| Msa1163530 | Msa1362210 | 0.836410 | 9.510210e-57 | -8.615850e-47 |
| Msa1163530 | Msa1397660 | 0.803353 | 3.629501e-49 | -8.615850e-47 |
| Msa0521050 | Msa1163530 | 0.806126 | 9.571191e-50 | -8.615850e-47 |
| Msa0953310 | Msa1163530 | 0.811385 | 7.188975e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163530 | MtrunA17_Chr7g0268051 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 2.03e-79 | 228 |
| Msa1163530 | MtrunA17_Chr5g0436331 | 94.643 | 112 | 6 | 0 | 1 | 112 | 26 | 137 | 4.54e-77 | 223 |
| Msa1163530 | MtrunA17_Chr7g0268081 | 86.667 | 90 | 12 | 0 | 18 | 107 | 10 | 99 | 4.03e-53 | 161 |
| Msa1163530 | MtrunA17_Chr7g0268061 | 86.667 | 90 | 12 | 0 | 18 | 107 | 10 | 99 | 4.03e-53 | 161 |
| Msa1163530 | MtrunA17_Chr7g0268071 | 92.771 | 83 | 6 | 0 | 17 | 99 | 8 | 90 | 4.50e-53 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163530 | AT1G74270.1 | 91.964 | 112 | 9 | 0 | 1 | 112 | 1 | 112 | 6.92e-74 | 214 |
| Msa1163530 | AT1G07070.1 | 91.071 | 112 | 10 | 0 | 1 | 112 | 1 | 112 | 7.72e-74 | 214 |
| Msa1163530 | AT3G55750.1 | 87.387 | 111 | 14 | 0 | 2 | 112 | 1 | 111 | 5.18e-71 | 207 |
| Msa1163530 | AT1G41880.1 | 86.486 | 111 | 15 | 0 | 2 | 112 | 1 | 111 | 7.87e-71 | 207 |
| Msa1163530 | AT1G41880.2 | 86.486 | 111 | 15 | 0 | 2 | 112 | 1 | 111 | 7.87e-71 | 207 |
Find 68 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCATGCTAATTGGTTTA+TGG | 0.181001 | 7_4:-54762314 | None:intergenic |
| GGGAAGATTTGACTTGAATT+TGG | 0.232635 | 7_4:+54763835 | None:intergenic |
| TTAAATTATTACCATTGATT+TGG | 0.240677 | 7_4:+54763811 | None:intergenic |
| TGGTGTTCACTCCTTCAATT+TGG | 0.242520 | 7_4:+54763993 | None:intergenic |
| TAAATTATTACCATTGATTT+GGG | 0.268294 | 7_4:+54763812 | None:intergenic |
| CTGTTTAGACTGTTCTTTGA+TGG | 0.273778 | 7_4:-54762947 | Msa1163530:three_prime_UTR |
| TGTTGCAGATTCAGGTGATT+AGG | 0.325385 | 7_4:-54763045 | Msa1163530:intron |
| GCCCCATATGCAACGGTAAT+GGG | 0.353096 | 7_4:+54763898 | None:intergenic |
| GAACCCATTACCGTTGCATA+TGG | 0.373177 | 7_4:-54763901 | Msa1163530:CDS |
| CCAGAGATGTGTTTGGGTAC+TGG | 0.398125 | 7_4:+54764017 | None:intergenic |
| ATTTGGACCAGAGATGTGTT+TGG | 0.405595 | 7_4:+54764010 | None:intergenic |
| GACGTCAAGGAGAGCGTGTC+AGG | 0.412439 | 7_4:-54764688 | Msa1163530:intron |
| TTTGGACCAGAGATGTGTTT+GGG | 0.422500 | 7_4:+54764011 | None:intergenic |
| AAAGTCATAAGTTGGGTAAA+CGG | 0.423107 | 7_4:-54762381 | Msa1163530:three_prime_UTR |
| GTGGACTTGGTTATCTCATA+TGG | 0.425109 | 7_4:-54762867 | Msa1163530:three_prime_UTR |
| TTGGTATGCTGGCAAGAAAA+TGG | 0.428506 | 7_4:-54763957 | Msa1163530:CDS |
| AGTTTACCTCATATATTGCT+TGG | 0.429962 | 7_4:+54763687 | None:intergenic |
| AATGTTGTGTACTGCTGTAT+TGG | 0.441877 | 7_4:-54762924 | Msa1163530:three_prime_UTR |
| GATTAGGTCAGTAGAGTTGC+GGG | 0.443533 | 7_4:-54763029 | Msa1163530:three_prime_UTR |
| CTAGTAAATGAAATGAATAT+AGG | 0.445187 | 7_4:-54762417 | Msa1163530:three_prime_UTR |
| TGCCCCATATGCAACGGTAA+TGG | 0.448613 | 7_4:+54763897 | None:intergenic |
| CAGCACCATGTGTGTGGACT+TGG | 0.449535 | 7_4:-54762880 | Msa1163530:three_prime_UTR |
| GAAGAGGTAGCTTGGTATGC+TGG | 0.459649 | 7_4:-54763968 | Msa1163530:CDS |
| AACCCATTACCGTTGCATAT+GGG | 0.460048 | 7_4:-54763900 | Msa1163530:CDS |
| ACGTCCCTTCACCATCTTCA+CGG | 0.462419 | 7_4:+54764706 | None:intergenic |
| ACATCTCTGGTCCAAATTGA+AGG | 0.462436 | 7_4:-54764004 | Msa1163530:CDS |
| GTTTACCTCATATATTGCTT+GGG | 0.467769 | 7_4:+54763688 | None:intergenic |
| TACGTGAGGGGTACAATCCT+TGG | 0.470557 | 7_4:-54764137 | Msa1163530:CDS |
| GTACAATCCTTGGATACAAA+AGG | 0.498010 | 7_4:-54764127 | Msa1163530:intron |
| GGTTCCGTTCTTCTTCACCT+TGG | 0.512346 | 7_4:+54763919 | None:intergenic |
| GTTTGGGTACTGGTTTACTT+TGG | 0.518411 | 7_4:+54764027 | None:intergenic |
| ATACCAAGCTACCTCTTCCT+TGG | 0.523366 | 7_4:+54763973 | None:intergenic |
| ACCCATTACCGTTGCATATG+GGG | 0.524799 | 7_4:-54763899 | Msa1163530:CDS |
| GCATATGGGGCAAGGTTACA+AGG | 0.526923 | 7_4:-54763886 | Msa1163530:CDS |
| CCAGTACCCAAACACATCTC+TGG | 0.530530 | 7_4:-54764017 | Msa1163530:CDS |
| TTGTATTAGGCTTTACGTGA+GGG | 0.533599 | 7_4:-54764150 | Msa1163530:intron |
| CTTCACGGCAACTCAAACGC+AGG | 0.543841 | 7_4:+54764721 | None:intergenic |
| CGTTTGAGTTGCCGTGAAGA+TGG | 0.544753 | 7_4:-54764717 | Msa1163530:exon |
| TTTGTATTAGGCTTTACGTG+AGG | 0.553810 | 7_4:-54764151 | Msa1163530:intron |
| AGGAGTGAACACCAAGGAAG+AGG | 0.555068 | 7_4:-54763984 | Msa1163530:CDS |
| ATGTACCCAAGCAATATATG+AGG | 0.556382 | 7_4:-54763693 | Msa1163530:intron |
| AATTATTACCATTGATTTGG+GGG | 0.558553 | 7_4:+54763814 | None:intergenic |
| GGCATATATCTACAAGGCCA+AGG | 0.574061 | 7_4:-54763936 | Msa1163530:CDS |
| TGATTAGGTCAGTAGAGTTG+CGG | 0.585635 | 7_4:-54763030 | Msa1163530:three_prime_UTR |
| AAATTATTACCATTGATTTG+GGG | 0.588097 | 7_4:+54763813 | None:intergenic |
| TTACCGTTGCATATGGGGCA+AGG | 0.593071 | 7_4:-54763894 | Msa1163530:CDS |
| ACACCAAGGAAGAGGTAGCT+TGG | 0.593143 | 7_4:-54763976 | Msa1163530:CDS |
| GTACATAAATACTCTTACGC+GGG | 0.601920 | 7_4:+54763710 | None:intergenic |
| ACGGCAACTCAAACGCAGGA+TGG | 0.603112 | 7_4:+54764725 | None:intergenic |
| TACAGTCAGCACCATGTGTG+TGG | 0.604128 | 7_4:-54762886 | Msa1163530:three_prime_UTR |
| TGTATTAGGCTTTACGTGAG+GGG | 0.604275 | 7_4:-54764149 | Msa1163530:intron |
| GGCAAGGTTACAAGGCCACA+TGG | 0.606069 | 7_4:-54763878 | Msa1163530:CDS |
| AAAATAGACAAAATTCCTTG+AGG | 0.608684 | 7_4:+54762992 | None:intergenic |
| AAGATGGTGAAGGGACGTCA+AGG | 0.609822 | 7_4:-54764701 | Msa1163530:CDS |
| CCTGTCGGTTCTGAGAGTGT+TGG | 0.614886 | 7_4:-54764754 | Msa1163530:five_prime_UTR |
| ATTATTACCATTGATTTGGG+GGG | 0.627666 | 7_4:+54763815 | None:intergenic |
| AAGGCCAAGGTGAAGAAGAA+CGG | 0.630167 | 7_4:-54763923 | Msa1163530:CDS |
| GAAAATGGCATATATCTACA+AGG | 0.630318 | 7_4:-54763942 | Msa1163530:CDS |
| CCAACACTCTCAGAACCGAC+AGG | 0.637783 | 7_4:+54764754 | None:intergenic |
| GGTACATAAATACTCTTACG+CGG | 0.638869 | 7_4:+54763709 | None:intergenic |
| GATAACCAAGTCCACACACA+TGG | 0.640711 | 7_4:+54762875 | None:intergenic |
| TAACCTTGCCCCATATGCAA+CGG | 0.648972 | 7_4:+54763891 | None:intergenic |
| GAACAGTCTAAACAGAAGAA+CGG | 0.650910 | 7_4:+54762955 | None:intergenic |
| AGTTGCCGTGAAGATGGTGA+AGG | 0.661868 | 7_4:-54764711 | Msa1163530:exon |
| ACAAGGCCACATGGTAACAG+TGG | 0.690947 | 7_4:-54763869 | Msa1163530:CDS |
| GTTGCCGTGAAGATGGTGAA+GGG | 0.718264 | 7_4:-54764710 | Msa1163530:exon |
| ACAATACCACTGTTACCATG+TGG | 0.724821 | 7_4:+54763863 | None:intergenic |
| AATTGAAGGAGTGAACACCA+AGG | 0.776962 | 7_4:-54763990 | Msa1163530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTAGCTTATTATA+TGG | + | chr7_4:54762905-54762924 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTAATCATCATT+TGG | - | chr7_4:54763307-54763326 | Msa1163530:intron | 10.0% |
| !!! | TTTTTTTTTAATCATCATTT+GGG | - | chr7_4:54763308-54763327 | Msa1163530:intron | 10.0% |
| !!! | AATTTTGCAATTTTATAAAT+AGG | - | chr7_4:54763945-54763964 | Msa1163530:CDS | 10.0% |
| !!! | ATTTTGCAATTTTATAAATA+GGG | - | chr7_4:54763946-54763965 | Msa1163530:CDS | 10.0% |
| !! | TATTCAATAAATAATGTATA+TGG | - | chr7_4:54764417-54764436 | Msa1163530:intron | 10.0% |
| !! | AGAAAAATTTATAAATAATG+GGG | + | chr7_4:54764561-54764580 | None:intergenic | 10.0% |
| !!! | GTTAAATTTGAATATTTTTT+TGG | - | chr7_4:54764754-54764773 | Msa1163530:five_prime_UTR | 10.0% |
| !!! | ATCATTGTTTTTAATTCATT+TGG | - | chr7_4:54762549-54762568 | Msa1163530:intron | 15.0% |
| !!! | ATTTATTTTTGAATGATAGT+AGG | + | chr7_4:54762608-54762627 | None:intergenic | 15.0% |
| !! | AAAATGAAATTATTCAAAGT+AGG | + | chr7_4:54762655-54762674 | None:intergenic | 15.0% |
| !!! | AAACATGAAAATTTTCAAAT+TGG | + | chr7_4:54762802-54762821 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTTCATTTGTATT+AGG | - | chr7_4:54762924-54762943 | Msa1163530:three_prime_UTR | 15.0% |
| !!! | TAAATTATTACCATTGATTT+GGG | + | chr7_4:54763278-54763297 | None:intergenic | 15.0% |
| !!! | TTAAATTATTACCATTGATT+TGG | + | chr7_4:54763279-54763298 | None:intergenic | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr7_4:54764349-54764368 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr7_4:54764350-54764369 | None:intergenic | 15.0% |
| !!! | AAATTATTACCATTGATTTG+GGG | + | chr7_4:54763277-54763296 | None:intergenic | 20.0% |
| !!! | GCTTACATATTTTACAAATA+TGG | - | chr7_4:54763563-54763582 | Msa1163530:intron | 20.0% |
| !! | TATCTAATATGAGAACTATA+TGG | - | chr7_4:54763776-54763795 | Msa1163530:intron | 20.0% |
| !! | ATCTATGATAACATAGTTTA+TGG | - | chr7_4:54763834-54763853 | Msa1163530:CDS | 20.0% |
| !!! | ACTTTTTTTAGAAAATTGGT+CGG | + | chr7_4:54764277-54764296 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr7_4:54764317-54764336 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAATTGACTTTTT+AGG | - | chr7_4:54764392-54764411 | Msa1163530:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr7_4:54764538-54764557 | None:intergenic | 20.0% |
| !! | CTAGTAAATGAAATGAATAT+AGG | - | chr7_4:54764670-54764689 | Msa1163530:intron | 20.0% |
| !!! | AACTTATGACTTTTTTGAAA+CGG | + | chr7_4:54764699-54764718 | None:intergenic | 20.0% |
| !! | TTTCAAAAAAGTCATAAGTT+GGG | - | chr7_4:54764699-54764718 | Msa1163530:CDS | 20.0% |
| ! | TAGTTTACAGAGTAAAGTAA+AGG | - | chr7_4:54762675-54762694 | Msa1163530:intron | 25.0% |
| ! | ATCTGAAAATCAACTGTATT+TGG | + | chr7_4:54762750-54762769 | None:intergenic | 25.0% |
| !! | TATCAGACACTTATATTTTG+TGG | - | chr7_4:54762774-54762793 | Msa1163530:intron | 25.0% |
| !! | ACTTTTCTAATGAAAATGTC+TGG | - | chr7_4:54762986-54763005 | Msa1163530:three_prime_UTR | 25.0% |
| !!! | AATTATTACCATTGATTTGG+GGG | + | chr7_4:54763276-54763295 | None:intergenic | 25.0% |
| !!! | AAACAATTCAAAAAGCATCT+AGG | + | chr7_4:54763430-54763449 | None:intergenic | 25.0% |
| !! | ATTGTTTGTCCTTTTCTTTT+TGG | - | chr7_4:54763443-54763462 | Msa1163530:intron | 25.0% |
| ! | TGTTATTATACTAGCAAGTT+TGG | + | chr7_4:54763614-54763633 | None:intergenic | 25.0% |
| ! | TTATCTTATCATGATTCATG+AGG | - | chr7_4:54763710-54763729 | Msa1163530:CDS | 25.0% |
| ! | ACTATATGGTTTCTAAATCA+TGG | - | chr7_4:54763790-54763809 | Msa1163530:intron | 25.0% |
| ! | TATGTTATCATAGATCAGAT+AGG | + | chr7_4:54763829-54763848 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGTTGCAGATTC+AGG | - | chr7_4:54764034-54764053 | Msa1163530:intron | 25.0% |
| ! | AAAATAGACAAAATTCCTTG+AGG | + | chr7_4:54764098-54764117 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTAGAAAAT+TGG | + | chr7_4:54764281-54764300 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr7_4:54764382-54764401 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr7_4:54764539-54764558 | None:intergenic | 25.0% |
| !! | TTTATAAATAATGGGGAAAG+TGG | + | chr7_4:54764554-54764573 | None:intergenic | 25.0% |
| !! | CATTTACTAGATTTTCTTCT+AGG | + | chr7_4:54764660-54764679 | None:intergenic | 25.0% |
| ! | GTTTCAAAAAAGTCATAAGT+TGG | - | chr7_4:54764698-54764717 | Msa1163530:CDS | 25.0% |
| !!! | TATTTTTTTGGCATGCTAAT+TGG | - | chr7_4:54764766-54764785 | Msa1163530:five_prime_UTR | 25.0% |
| GAAAATCAACTGTATTTGGT+TGG | + | chr7_4:54762746-54762765 | None:intergenic | 30.0% | |
| ! | TAAATACGCATAGTTAGTCT+GGG | + | chr7_4:54762866-54762885 | None:intergenic | 30.0% |
| ! | AAGTTTACCTTTTGTATCCA+AGG | + | chr7_4:54762970-54762989 | None:intergenic | 30.0% |
| GAAAATGGCATATATCTACA+AGG | - | chr7_4:54763145-54763164 | Msa1163530:intron | 30.0% | |
| !! | ATTATTACCATTGATTTGGG+GGG | + | chr7_4:54763275-54763294 | None:intergenic | 30.0% |
| TGTTATCTTAATCTCGTGTT+TGG | - | chr7_4:54763339-54763358 | Msa1163530:intron | 30.0% | |
| TCGTGTTTGGATTAATTTCA+GGG | - | chr7_4:54763352-54763371 | Msa1163530:intron | 30.0% | |
| GTTTACCTCATATATTGCTT+GGG | + | chr7_4:54763402-54763421 | None:intergenic | 30.0% | |
| AGTTTACCTCATATATTGCT+TGG | + | chr7_4:54763403-54763422 | None:intergenic | 30.0% | |
| ! | CAAGCATTTTCTCATTTGAT+GGG | - | chr7_4:54763508-54763527 | Msa1163530:intron | 30.0% |
| ! | AAGCATTTTCTCATTTGATG+GGG | - | chr7_4:54763509-54763528 | Msa1163530:intron | 30.0% |
| AAATATGTAAGCACGTAAAC+AGG | + | chr7_4:54763555-54763574 | None:intergenic | 30.0% | |
| ! | ACTTTCTCTTGATGTTACTT+TGG | - | chr7_4:54764009-54764028 | Msa1163530:CDS | 30.0% |
| !! | TGAAATGGCTCAGTTATTTT+GGG | + | chr7_4:54764302-54764321 | None:intergenic | 30.0% |
| ! | TTGAAATGGCTCAGTTATTT+TGG | + | chr7_4:54764303-54764322 | None:intergenic | 30.0% |
| ACTCTAATTAATACTTCCTC+CGG | - | chr7_4:54764360-54764379 | Msa1163530:intron | 30.0% | |
| ! | AAAGTCATAAGTTGGGTAAA+CGG | - | chr7_4:54764706-54764725 | Msa1163530:exon | 30.0% |
| AAAATCCTAAAATCGCCTGT+CGG | - | chr7_4:54762318-54762337 | Msa1163530:three_prime_UTR | 35.0% | |
| GTAAATACGCATAGTTAGTC+TGG | + | chr7_4:54762867-54762886 | None:intergenic | 35.0% | |
| TTTGTATTAGGCTTTACGTG+AGG | - | chr7_4:54762936-54762955 | Msa1163530:three_prime_UTR | 35.0% | |
| TTGTATTAGGCTTTACGTGA+GGG | - | chr7_4:54762937-54762956 | Msa1163530:three_prime_UTR | 35.0% | |
| GTACAATCCTTGGATACAAA+AGG | - | chr7_4:54762960-54762979 | Msa1163530:three_prime_UTR | 35.0% | |
| AAATGTCTGGTTAGATGCTT+TGG | - | chr7_4:54762999-54763018 | Msa1163530:three_prime_UTR | 35.0% | |
| !! | GGGAAGATTTGACTTGAATT+TGG | + | chr7_4:54763255-54763274 | None:intergenic | 35.0% |
| CTCGTGTTTGGATTAATTTC+AGG | - | chr7_4:54763351-54763370 | Msa1163530:intron | 35.0% | |
| GTACATAAATACTCTTACGC+GGG | + | chr7_4:54763380-54763399 | None:intergenic | 35.0% | |
| GGTACATAAATACTCTTACG+CGG | + | chr7_4:54763381-54763400 | None:intergenic | 35.0% | |
| ATGTACCCAAGCAATATATG+AGG | - | chr7_4:54763394-54763413 | Msa1163530:intron | 35.0% | |
| CGAAAGAAGCCAAAAAGAAA+AGG | + | chr7_4:54763455-54763474 | None:intergenic | 35.0% | |
| CCATCAAATGAGAAAATGCT+TGG | + | chr7_4:54763510-54763529 | None:intergenic | 35.0% | |
| ! | CCAAGCATTTTCTCATTTGA+TGG | - | chr7_4:54763507-54763526 | Msa1163530:intron | 35.0% |
| !! | TCTTATGCTCTAGAGTTATG+CGG | - | chr7_4:54763734-54763753 | Msa1163530:intron | 35.0% |
| !!! | GATGATTTTTAGTAGCCTCA+AGG | - | chr7_4:54764080-54764099 | Msa1163530:intron | 35.0% |
| GAACAGTCTAAACAGAAGAA+CGG | + | chr7_4:54764135-54764154 | None:intergenic | 35.0% | |
| CTGTTTAGACTGTTCTTTGA+TGG | - | chr7_4:54764140-54764159 | Msa1163530:CDS | 35.0% | |
| AATGTTGTGTACTGCTGTAT+TGG | - | chr7_4:54764163-54764182 | Msa1163530:intron | 35.0% | |
| AGAAAATTGGTCGGATATTC+CGG | + | chr7_4:54764268-54764287 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | - | chr7_4:54764493-54764512 | Msa1163530:intron | 35.0% | |
| GATAAAAGTAGTACTTCCTC+TGG | + | chr7_4:54764512-54764531 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | - | chr7_4:54764583-54764602 | Msa1163530:intron | 35.0% | |
| TGTATTAGGCTTTACGTGAG+GGG | - | chr7_4:54762938-54762957 | Msa1163530:three_prime_UTR | 40.0% | |
| !! | GTTTGGGTACTGGTTTACTT+TGG | + | chr7_4:54763063-54763082 | None:intergenic | 40.0% |
| TTTGGACCAGAGATGTGTTT+GGG | + | chr7_4:54763079-54763098 | None:intergenic | 40.0% | |
| ATTTGGACCAGAGATGTGTT+TGG | + | chr7_4:54763080-54763099 | None:intergenic | 40.0% | |
| ACATCTCTGGTCCAAATTGA+AGG | - | chr7_4:54763083-54763102 | Msa1163530:intron | 40.0% | |
| TGGTGTTCACTCCTTCAATT+TGG | + | chr7_4:54763097-54763116 | None:intergenic | 40.0% | |
| AATTGAAGGAGTGAACACCA+AGG | - | chr7_4:54763097-54763116 | Msa1163530:intron | 40.0% | |
| TTGGTATGCTGGCAAGAAAA+TGG | - | chr7_4:54763130-54763149 | Msa1163530:intron | 40.0% | |
| AACCCATTACCGTTGCATAT+GGG | - | chr7_4:54763187-54763206 | Msa1163530:intron | 40.0% | |
| ACAATACCACTGTTACCATG+TGG | + | chr7_4:54763227-54763246 | None:intergenic | 40.0% | |
| AAATCTTCCCCCCAAATCAA+TGG | - | chr7_4:54763265-54763284 | Msa1163530:intron | 40.0% | |
| AAATGCTTGGAAAACACGAG+AGG | + | chr7_4:54763497-54763516 | None:intergenic | 40.0% | |
| ACAGGTCAGAAGTTTCAAAC+AGG | + | chr7_4:54763537-54763556 | None:intergenic | 40.0% | |
| TATAAATAGGGCCTCTTCTC+TGG | - | chr7_4:54763958-54763977 | Msa1163530:CDS | 40.0% | |
| TGTTGCAGATTCAGGTGATT+AGG | - | chr7_4:54764042-54764061 | Msa1163530:intron | 40.0% | |
| TGATTAGGTCAGTAGAGTTG+CGG | - | chr7_4:54764057-54764076 | Msa1163530:intron | 40.0% | |
| ! | GTGGACTTGGTTATCTCATA+TGG | - | chr7_4:54764220-54764239 | Msa1163530:intron | 40.0% |
| GAAAATTGGTCGGATATTCC+GGG | + | chr7_4:54764267-54764286 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr7_4:54764379-54764398 | None:intergenic | 40.0% | |
| ! | CCAAACTGGCTCAGATAAAA+CGG | - | chr7_4:54764597-54764616 | Msa1163530:intron | 40.0% |
| ! | CAAACTGGCTCAGATAAAAC+GGG | - | chr7_4:54764598-54764617 | Msa1163530:intron | 40.0% |
| ATACCAAGCTACCTCTTCCT+TGG | + | chr7_4:54763117-54763136 | None:intergenic | 45.0% | |
| GGCATATATCTACAAGGCCA+AGG | - | chr7_4:54763151-54763170 | Msa1163530:intron | 45.0% | |
| AAGGCCAAGGTGAAGAAGAA+CGG | - | chr7_4:54763164-54763183 | Msa1163530:intron | 45.0% | |
| GAACCCATTACCGTTGCATA+TGG | - | chr7_4:54763186-54763205 | Msa1163530:intron | 45.0% | |
| ACCCATTACCGTTGCATATG+GGG | - | chr7_4:54763188-54763207 | Msa1163530:intron | 45.0% | |
| TAACCTTGCCCCATATGCAA+CGG | + | chr7_4:54763199-54763218 | None:intergenic | 45.0% | |
| GATTAGGTCAGTAGAGTTGC+GGG | - | chr7_4:54764058-54764077 | Msa1163530:intron | 45.0% | |
| GATAACCAAGTCCACACACA+TGG | + | chr7_4:54764215-54764234 | None:intergenic | 45.0% | |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | + | chr7_4:54764600-54764619 | None:intergenic | 45.0% |
| !! | AAGAAAAATTTATAAATAAT+GGG | + | chr7_4:54764562-54764581 | None:intergenic | 5.0% |
| !! | TAAGAAAAATTTATAAATAA+TGG | + | chr7_4:54764563-54764582 | None:intergenic | 5.0% |
| ! | CAGAACCGACAGGCGATTTT+AGG | + | chr7_4:54762326-54762345 | None:intergenic | 50.0% |
| !! | CGTTTGAGTTGCCGTGAAGA+TGG | - | chr7_4:54762370-54762389 | Msa1163530:three_prime_UTR | 50.0% |
| AGTTGCCGTGAAGATGGTGA+AGG | - | chr7_4:54762376-54762395 | Msa1163530:three_prime_UTR | 50.0% | |
| GTTGCCGTGAAGATGGTGAA+GGG | - | chr7_4:54762377-54762396 | Msa1163530:three_prime_UTR | 50.0% | |
| ACGTCCCTTCACCATCTTCA+CGG | + | chr7_4:54762384-54762403 | None:intergenic | 50.0% | |
| AAGATGGTGAAGGGACGTCA+AGG | - | chr7_4:54762386-54762405 | Msa1163530:three_prime_UTR | 50.0% | |
| ! | TACGTGAGGGGTACAATCCT+TGG | - | chr7_4:54762950-54762969 | Msa1163530:three_prime_UTR | 50.0% |
| CCAGAGATGTGTTTGGGTAC+TGG | + | chr7_4:54763073-54763092 | None:intergenic | 50.0% | |
| CCAGTACCCAAACACATCTC+TGG | - | chr7_4:54763070-54763089 | Msa1163530:intron | 50.0% | |
| AGGAGTGAACACCAAGGAAG+AGG | - | chr7_4:54763103-54763122 | Msa1163530:intron | 50.0% | |
| ACACCAAGGAAGAGGTAGCT+TGG | - | chr7_4:54763111-54763130 | Msa1163530:intron | 50.0% | |
| GAAGAGGTAGCTTGGTATGC+TGG | - | chr7_4:54763119-54763138 | Msa1163530:intron | 50.0% | |
| GGTTCCGTTCTTCTTCACCT+TGG | + | chr7_4:54763171-54763190 | None:intergenic | 50.0% | |
| GCCCCATATGCAACGGTAAT+GGG | + | chr7_4:54763192-54763211 | None:intergenic | 50.0% | |
| TGCCCCATATGCAACGGTAA+TGG | + | chr7_4:54763193-54763212 | None:intergenic | 50.0% | |
| TTACCGTTGCATATGGGGCA+AGG | - | chr7_4:54763193-54763212 | Msa1163530:intron | 50.0% | |
| GCATATGGGGCAAGGTTACA+AGG | - | chr7_4:54763201-54763220 | Msa1163530:intron | 50.0% | |
| ACAAGGCCACATGGTAACAG+TGG | - | chr7_4:54763218-54763237 | Msa1163530:intron | 50.0% | |
| TACAGTCAGCACCATGTGTG+TGG | - | chr7_4:54764201-54764220 | Msa1163530:intron | 50.0% | |
| ATTGGTCGGATATTCCGGGA+CGG | + | chr7_4:54764263-54764282 | None:intergenic | 50.0% | |
| CTGGCTCAGATAAAACGGGA+CGG | - | chr7_4:54764602-54764621 | Msa1163530:intron | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | - | chr7_4:54764606-54764625 | Msa1163530:intron | 50.0% | |
| CCAACACTCTCAGAACCGAC+AGG | + | chr7_4:54762336-54762355 | None:intergenic | 55.0% | |
| !! | CCTGTCGGTTCTGAGAGTGT+TGG | - | chr7_4:54762333-54762352 | Msa1163530:three_prime_UTR | 55.0% |
| ACGGCAACTCAAACGCAGGA+TGG | + | chr7_4:54762365-54762384 | None:intergenic | 55.0% | |
| CTTCACGGCAACTCAAACGC+AGG | + | chr7_4:54762369-54762388 | None:intergenic | 55.0% | |
| GGCAAGGTTACAAGGCCACA+TGG | - | chr7_4:54763209-54763228 | Msa1163530:intron | 55.0% | |
| ! | GTGCTGCTAGACCAGAGAAG+AGG | + | chr7_4:54763972-54763991 | None:intergenic | 55.0% |
| CAGCACCATGTGTGTGGACT+TGG | - | chr7_4:54764207-54764226 | Msa1163530:intron | 55.0% | |
| GCTCAGATAAAACGGGACGG+AGG | - | chr7_4:54764605-54764624 | Msa1163530:intron | 55.0% | |
| ! | GACGTCAAGGAGAGCGTGTC+AGG | - | chr7_4:54762399-54762418 | Msa1163530:three_prime_UTR | 60.0% |
| CTCTGGTCTAGCAGCACGCA+TGG | - | chr7_4:54763975-54763994 | Msa1163530:CDS | 60.0% | |
| ! | TCGTGTTACTCCCTCCGTCC+CGG | - | chr7_4:54764246-54764265 | Msa1163530:intron | 60.0% |
| GTCGGATATTCCGGGACGGA+GGG | + | chr7_4:54764259-54764278 | None:intergenic | 60.0% | |
| GGTCGGATATTCCGGGACGG+AGG | + | chr7_4:54764260-54764279 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54762315 | 54764794 | 54762315 | ID=Msa1163530;Name=Msa1163530 |
| chr7_4 | mRNA | 54762315 | 54764794 | 54762315 | ID=Msa1163530-mRNA-1;Parent=Msa1163530;Name=Msa1163530-mRNA-1;_AED=0.20;_eAED=0.20;_QI=74|1|1|1|0.6|0.5|6|365|112 |
| chr7_4 | exon | 54762315 | 54762478 | 54762315 | ID=Msa1163530-mRNA-1:exon:15973;Parent=Msa1163530-mRNA-1 |
| chr7_4 | exon | 54762860 | 54763059 | 54762860 | ID=Msa1163530-mRNA-1:exon:15972;Parent=Msa1163530-mRNA-1 |
| chr7_4 | exon | 54763694 | 54763736 | 54763694 | ID=Msa1163530-mRNA-1:exon:15971;Parent=Msa1163530-mRNA-1 |
| chr7_4 | exon | 54763823 | 54764051 | 54763823 | ID=Msa1163530-mRNA-1:exon:15970;Parent=Msa1163530-mRNA-1 |
| chr7_4 | exon | 54764128 | 54764163 | 54764128 | ID=Msa1163530-mRNA-1:exon:15969;Parent=Msa1163530-mRNA-1 |
| chr7_4 | exon | 54764689 | 54764794 | 54764689 | ID=Msa1163530-mRNA-1:exon:15968;Parent=Msa1163530-mRNA-1 |
| chr7_4 | five_prime_UTR | 54764721 | 54764794 | 54764721 | ID=Msa1163530-mRNA-1:five_prime_utr;Parent=Msa1163530-mRNA-1 |
| chr7_4 | CDS | 54764689 | 54764720 | 54764689 | ID=Msa1163530-mRNA-1:cds;Parent=Msa1163530-mRNA-1 |
| chr7_4 | CDS | 54764128 | 54764163 | 54764128 | ID=Msa1163530-mRNA-1:cds;Parent=Msa1163530-mRNA-1 |
| chr7_4 | CDS | 54763823 | 54764051 | 54763823 | ID=Msa1163530-mRNA-1:cds;Parent=Msa1163530-mRNA-1 |
| chr7_4 | CDS | 54763695 | 54763736 | 54763695 | ID=Msa1163530-mRNA-1:cds;Parent=Msa1163530-mRNA-1 |
| chr7_4 | three_prime_UTR | 54763694 | 54763694 | 54763694 | ID=Msa1163530-mRNA-1:three_prime_utr;Parent=Msa1163530-mRNA-1 |
| chr7_4 | three_prime_UTR | 54762860 | 54763059 | 54762860 | ID=Msa1163530-mRNA-1:three_prime_utr;Parent=Msa1163530-mRNA-1 |
| chr7_4 | three_prime_UTR | 54762315 | 54762478 | 54762315 | ID=Msa1163530-mRNA-1:three_prime_utr;Parent=Msa1163530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
