Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605130 | KEH30386.1 | 98.998 | 599 | 6 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605130 | sp|Q949V6|ARI1_ARATH | 61.626 | 615 | 199 | 11 | 3 | 599 | 2 | 597 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605130 | Msa0605190 | 0.943244 | 1.706766e-102 | -8.615850e-47 |
| Msa0206330 | Msa0605130 | 0.808482 | 3.030924e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605130 | MtrunA17_Chr4g0034371 | 99.081 | 544 | 5 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1129 |
| Msa0605130 | MtrunA17_Chr4g0033361 | 30.143 | 491 | 303 | 12 | 48 | 520 | 61 | 529 | 1.77e-61 | 214 |
| Msa0605130 | MtrunA17_Chr2g0329221 | 28.717 | 491 | 310 | 12 | 48 | 520 | 71 | 539 | 2.48e-60 | 211 |
| Msa0605130 | MtrunA17_Chr3g0110331 | 28.776 | 490 | 306 | 12 | 49 | 520 | 57 | 521 | 5.00e-58 | 204 |
| Msa0605130 | MtrunA17_Chr3g0110341 | 29.142 | 501 | 309 | 16 | 49 | 533 | 84 | 554 | 1.55e-54 | 195 |
| Msa0605130 | MtrunA17_Chr4g0038181 | 27.824 | 478 | 273 | 16 | 48 | 495 | 7 | 442 | 6.54e-44 | 162 |
| Msa0605130 | MtrunA17_Chr5g0447801 | 29.452 | 292 | 175 | 7 | 245 | 520 | 2 | 278 | 5.64e-32 | 125 |
| Msa0605130 | MtrunA17_Chr4g0034361 | 98.148 | 54 | 1 | 0 | 546 | 599 | 1 | 54 | 2.40e-29 | 110 |
| Msa0605130 | MtrunA17_Chr4g0038201 | 23.269 | 361 | 186 | 11 | 19 | 356 | 7 | 299 | 6.03e-23 | 100 |
| Msa0605130 | MtrunA17_Chr1g0164621 | 29.592 | 196 | 124 | 8 | 126 | 315 | 1245 | 1432 | 7.34e-14 | 75.1 |
| Msa0605130 | MtrunA17_Chr5g0410911 | 24.000 | 225 | 120 | 6 | 126 | 318 | 322 | 527 | 1.74e-13 | 73.6 |
| Msa0605130 | MtrunA17_Chr3g0082091 | 29.082 | 196 | 125 | 8 | 126 | 315 | 1243 | 1430 | 2.42e-13 | 73.6 |
| Msa0605130 | MtrunA17_Chr3g0123681 | 30.256 | 195 | 124 | 7 | 126 | 315 | 1523 | 1710 | 2.33e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605130 | AT4G34370.1 | 61.626 | 615 | 199 | 11 | 3 | 599 | 2 | 597 | 0.0 | 770 |
| Msa0605130 | AT2G16090.1 | 61.639 | 610 | 204 | 10 | 1 | 598 | 1 | 592 | 0.0 | 762 |
| Msa0605130 | AT2G16090.4 | 61.688 | 616 | 188 | 11 | 1 | 598 | 1 | 586 | 0.0 | 757 |
| Msa0605130 | AT2G16090.3 | 66.171 | 538 | 164 | 8 | 1 | 533 | 1 | 525 | 0.0 | 735 |
| Msa0605130 | AT2G16090.2 | 63.603 | 544 | 175 | 7 | 66 | 598 | 1 | 532 | 0.0 | 713 |
| Msa0605130 | AT2G16090.5 | 69.068 | 472 | 135 | 5 | 66 | 533 | 1 | 465 | 0.0 | 685 |
| Msa0605130 | AT3G27710.1 | 59.921 | 509 | 190 | 8 | 29 | 533 | 26 | 524 | 0.0 | 632 |
| Msa0605130 | AT4G34370.2 | 65.393 | 445 | 123 | 9 | 171 | 599 | 1 | 430 | 0.0 | 589 |
| Msa0605130 | AT3G27720.1 | 63.450 | 342 | 119 | 4 | 194 | 533 | 147 | 484 | 2.43e-160 | 468 |
| Msa0605130 | AT2G31510.1 | 29.468 | 526 | 328 | 13 | 2 | 509 | 18 | 518 | 2.04e-65 | 224 |
| Msa0605130 | AT2G31510.2 | 30.675 | 489 | 301 | 12 | 2 | 477 | 18 | 481 | 1.22e-63 | 218 |
| Msa0605130 | AT2G31510.3 | 29.764 | 467 | 289 | 11 | 60 | 509 | 2 | 446 | 2.20e-63 | 217 |
| Msa0605130 | AT2G31770.1 | 27.379 | 515 | 334 | 15 | 14 | 509 | 3 | 496 | 3.26e-63 | 218 |
| Msa0605130 | AT1G05890.1 | 29.264 | 516 | 318 | 14 | 14 | 509 | 23 | 511 | 2.32e-62 | 216 |
| Msa0605130 | AT1G05890.2 | 28.958 | 480 | 298 | 11 | 48 | 509 | 99 | 553 | 2.53e-60 | 211 |
| Msa0605130 | AT2G31780.1 | 31.250 | 416 | 255 | 13 | 24 | 430 | 42 | 435 | 1.79e-59 | 205 |
| Msa0605130 | AT2G31760.1 | 28.846 | 468 | 301 | 14 | 48 | 509 | 45 | 486 | 4.53e-59 | 206 |
| Msa0605130 | AT1G65430.1 | 28.442 | 552 | 339 | 16 | 2 | 526 | 4 | 526 | 4.28e-58 | 204 |
| Msa0605130 | AT5G08730.1 | 26.233 | 446 | 284 | 16 | 48 | 481 | 10 | 422 | 5.79e-32 | 130 |
| Msa0605130 | AT1G05880.2 | 22.153 | 483 | 328 | 13 | 46 | 514 | 39 | 487 | 5.76e-27 | 115 |
| Msa0605130 | AT1G05880.3 | 23.007 | 439 | 295 | 12 | 46 | 475 | 39 | 443 | 7.29e-26 | 111 |
| Msa0605130 | AT1G05880.1 | 22.107 | 484 | 320 | 13 | 46 | 514 | 39 | 480 | 3.26e-25 | 109 |
| Msa0605130 | AT5G63750.1 | 24.266 | 511 | 303 | 20 | 48 | 501 | 11 | 494 | 1.46e-19 | 92.8 |
| Msa0605130 | AT5G63730.1 | 27.719 | 285 | 181 | 11 | 48 | 315 | 11 | 287 | 3.32e-17 | 85.5 |
| Msa0605130 | AT5G63760.1 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.25e-15 | 80.1 |
| Msa0605130 | AT5G63760.3 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.25e-15 | 80.1 |
| Msa0605130 | AT5G63760.2 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.25e-15 | 80.1 |
| Msa0605130 | AT3G14250.1 | 29.864 | 221 | 128 | 11 | 125 | 333 | 94 | 299 | 3.08e-15 | 77.4 |
| Msa0605130 | AT1G32340.1 | 26.360 | 239 | 142 | 7 | 109 | 323 | 361 | 589 | 1.26e-14 | 77.8 |
| Msa0605130 | AT5G10370.1 | 26.633 | 199 | 137 | 6 | 120 | 315 | 1558 | 1750 | 2.44e-13 | 73.9 |
| Msa0605130 | AT2G26135.1 | 30.882 | 204 | 123 | 9 | 126 | 320 | 153 | 347 | 1.00e-12 | 70.5 |
| Msa0605130 | AT4G01020.1 | 26.154 | 195 | 131 | 7 | 126 | 315 | 1561 | 1747 | 2.37e-12 | 70.9 |
| Msa0605130 | AT2G26130.1 | 29.327 | 208 | 122 | 9 | 126 | 320 | 159 | 354 | 8.94e-12 | 67.8 |
| Msa0605130 | AT5G63760.4 | 33.835 | 133 | 71 | 7 | 199 | 315 | 2 | 133 | 1.66e-11 | 66.6 |
Find 119 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTACTTTCAAGCTTAA+AGG | 0.141595 | 4_2:+50891300 | None:intergenic |
| AGATTAGGGTTTATATTATT+TGG | 0.154369 | 4_2:+50893981 | None:intergenic |
| TTTGAAGTTTATGTAGAAAA+AGG | 0.183191 | 4_2:-50892808 | Msa0605130:CDS |
| CATAAGTTTAGCATATTTAA+AGG | 0.183354 | 4_2:+50890982 | None:intergenic |
| GTGCATCGACAATGATTTAT+TGG | 0.189539 | 4_2:-50890812 | Msa0605130:CDS |
| TCTATGCCCTTTGATTTATA+TGG | 0.230617 | 4_2:+50890754 | None:intergenic |
| CTTTAAATATGCTAAACTTA+TGG | 0.276659 | 4_2:-50890981 | Msa0605130:CDS |
| TCATACTTCTCTGCCATATC+AGG | 0.290091 | 4_2:+50892057 | None:intergenic |
| GAGAAGAAGAAGGTAGATTA+GGG | 0.291176 | 4_2:+50893967 | None:intergenic |
| ATGAATCAGAAACTGTTAAT+TGG | 0.291470 | 4_2:-50891819 | Msa0605130:CDS |
| TGAGAAGAAGAAGGTAGATT+AGG | 0.299056 | 4_2:+50893966 | None:intergenic |
| GTATTTGCGGCCAAGCATTT+TGG | 0.310007 | 4_2:-50891720 | Msa0605130:intron |
| CTTCAGAGCTTCCAGTTTGT+TGG | 0.314668 | 4_2:-50890726 | Msa0605130:CDS |
| GTGGGAATGCAATTCGTGTT+GGG | 0.340005 | 4_2:-50891966 | Msa0605130:CDS |
| GATTATAGCTGGGTAAATAA+TGG | 0.340008 | 4_2:-50891205 | Msa0605130:CDS |
| CGTGTTTGATGTGGGAGCTC+TGG | 0.345421 | 4_2:-50891858 | Msa0605130:CDS |
| AATCAGCTGAGCGGGCAAAA+AGG | 0.360614 | 4_2:-50891375 | Msa0605130:CDS |
| GCTTTATTGCTCCAACAAAC+TGG | 0.371482 | 4_2:+50890715 | None:intergenic |
| CTCCCACATCAAACACGAAC+AGG | 0.384521 | 4_2:+50891864 | None:intergenic |
| AGGGTTTATATTATTTGGAT+TGG | 0.385627 | 4_2:+50893986 | None:intergenic |
| TCTCTTATTGTCTTCAATGT+AGG | 0.390159 | 4_2:+50892017 | None:intergenic |
| TAATGCTTATTTATCATCGT+TGG | 0.400236 | 4_2:-50892846 | Msa0605130:CDS |
| TTCTATTGCTCCCGCTGCTC+AGG | 0.411819 | 4_2:-50893807 | Msa0605130:intron |
| AAGACAATAAGAGAGTTAAA+TGG | 0.413854 | 4_2:-50892008 | Msa0605130:CDS |
| CTGAACTCAATGATTATAGC+TGG | 0.414125 | 4_2:-50891216 | Msa0605130:CDS |
| TGGTAGAAAGCACCCTGATA+TGG | 0.419498 | 4_2:-50892070 | Msa0605130:CDS |
| ATTCTTGTTGCTTCATCACT+AGG | 0.422785 | 4_2:+50892679 | None:intergenic |
| GGATCAACAGCAGCAGTTAG+AGG | 0.425749 | 4_2:-50891050 | Msa0605130:CDS |
| GCATTTATGTTTGCTCAGGC+TGG | 0.428355 | 4_2:-50892781 | Msa0605130:CDS |
| AATGCTTATTTATCATCGTT+GGG | 0.432983 | 4_2:-50892845 | Msa0605130:CDS |
| TTCCCACAATGTGGCGTGCT+CGG | 0.435694 | 4_2:+50891982 | None:intergenic |
| CGGTTTGTGGCACTTTGGAC+AGG | 0.440450 | 4_2:+50891777 | None:intergenic |
| TTCTTCTTCGACGTCTTGAT+CGG | 0.440913 | 4_2:+50893883 | None:intergenic |
| CTACTGGCCGTGATCATACT+TGG | 0.451535 | 4_2:-50891444 | Msa0605130:CDS |
| GAAGGCATTTATGTTTGCTC+AGG | 0.464709 | 4_2:-50892785 | Msa0605130:CDS |
| TGGTTGTGTGGTGGAGCTAC+TGG | 0.468440 | 4_2:-50891460 | Msa0605130:CDS |
| ATGCTAAACTTATGGAGATA+AGG | 0.473847 | 4_2:-50890973 | Msa0605130:CDS |
| TATTTATCATCGTTGGGATG+TGG | 0.476215 | 4_2:-50892839 | Msa0605130:CDS |
| CAATTCACTATTCAATTCGA+TGG | 0.481462 | 4_2:-50893945 | Msa0605130:exon |
| GGTACATGCATTATCATAAC+CGG | 0.485862 | 4_2:-50891342 | Msa0605130:CDS |
| ACAAATGTCAGAAGCTGAAA+GGG | 0.487072 | 4_2:-50891095 | Msa0605130:CDS |
| AGAAATGTTACTGAGTGAAA+AGG | 0.489380 | 4_2:-50890046 | Msa0605130:CDS |
| AATGAAACAGAACTTATTTG+AGG | 0.494812 | 4_2:-50891071 | Msa0605130:CDS |
| TAGTGATGAAGCAACAAGAA+TGG | 0.496144 | 4_2:-50892677 | Msa0605130:CDS |
| GAGCAATAAAGCTGACAATA+CGG | 0.496778 | 4_2:-50890704 | Msa0605130:CDS |
| CGTAAGCGTGCCAGAGAAGA+AGG | 0.497557 | 4_2:-50889949 | Msa0605130:CDS |
| GTCCGAGCACGCCACATTGT+GGG | 0.497626 | 4_2:-50891984 | Msa0605130:CDS |
| AGAAAGCAAAACAAAGCAAA+GGG | 0.498108 | 4_2:-50894115 | None:intergenic |
| CATACTTGGTCAAGTATAGC+TGG | 0.500185 | 4_2:-50891430 | Msa0605130:CDS |
| CTGTCCAAAGTGCCACAAAC+CGG | 0.503790 | 4_2:-50891776 | Msa0605130:CDS |
| TATTATTTGGATTGGATCGA+GGG | 0.504087 | 4_2:+50893994 | None:intergenic |
| TCAAGAGAAATCAGCTGAGC+GGG | 0.505415 | 4_2:-50891383 | Msa0605130:CDS |
| AATTTGGTTAGCTGTATTTG+CGG | 0.507682 | 4_2:-50891733 | Msa0605130:CDS |
| GGAGGACTTGCGCAGAGTGA+TGG | 0.509123 | 4_2:-50892902 | Msa0605130:CDS |
| GTGTTTGATGTGGGAGCTCT+GGG | 0.510947 | 4_2:-50891857 | Msa0605130:CDS |
| ATATCATGACTCTGGCTCGC+TGG | 0.511966 | 4_2:-50892743 | Msa0605130:CDS |
| TCCACCGGTTTGTGGCACTT+TGG | 0.517904 | 4_2:+50891772 | None:intergenic |
| TGGGAATGCAATTCGTGTTG+GGG | 0.518482 | 4_2:-50891965 | Msa0605130:CDS |
| TTATTGGATTCTATTAATCT+CGG | 0.520903 | 4_2:-50890796 | Msa0605130:CDS |
| TATAGCACCATATAAATCAA+AGG | 0.523492 | 4_2:-50890761 | Msa0605130:CDS |
| ATATTATTTGGATTGGATCG+AGG | 0.525334 | 4_2:+50893993 | None:intergenic |
| GCTGTCGTAAGAACTTTACT+TGG | 0.526473 | 4_2:-50892090 | Msa0605130:CDS |
| AACAAATGTCAGAAGCTGAA+AGG | 0.528651 | 4_2:-50891096 | Msa0605130:CDS |
| ATAGCACCATATAAATCAAA+GGG | 0.529766 | 4_2:-50890760 | Msa0605130:CDS |
| TTTCTGTCTACAACTTCAGC+TGG | 0.532183 | 4_2:+50889904 | None:intergenic |
| AAGGAAGGAACCTGAGCAGC+GGG | 0.534714 | 4_2:+50893797 | None:intergenic |
| TGTGGGAATGCAATTCGTGT+TGG | 0.535934 | 4_2:-50891967 | Msa0605130:CDS |
| CTGTACAGTTGGTTGTGTGG+TGG | 0.539491 | 4_2:-50891469 | Msa0605130:intron |
| AGCAATAAAGCTGACAATAC+GGG | 0.541090 | 4_2:-50890703 | Msa0605130:intron |
| GGAATACTCACCAAAATGCT+TGG | 0.544949 | 4_2:+50891710 | None:intergenic |
| CCCCTGTTCGTGTTTGATGT+GGG | 0.548928 | 4_2:-50891866 | Msa0605130:CDS |
| GACACAGCATTTCTTTGTCA+AGG | 0.556593 | 4_2:-50892178 | Msa0605130:CDS |
| AGTCTGTGTGAGCTTTATAC+CGG | 0.559653 | 4_2:+50891323 | None:intergenic |
| TGTCCGAGCACGCCACATTG+TGG | 0.561018 | 4_2:-50891985 | Msa0605130:CDS |
| AAGAAAGCAAAACAAAGCAA+AGG | 0.562786 | 4_2:-50894116 | None:intergenic |
| GGAATCACTGATAGTTGCAC+AGG | 0.563375 | 4_2:-50893017 | Msa0605130:intron |
| CATACTTCTCTGCCATATCA+GGG | 0.565467 | 4_2:+50892058 | None:intergenic |
| TGTATATATGCTGCAAGCGT+AGG | 0.573507 | 4_2:-50890018 | Msa0605130:CDS |
| TGCTCAGGCTGGTGTTAGTG+TGG | 0.573538 | 4_2:-50892770 | Msa0605130:CDS |
| GCATATTTAAAGGTGTCGAA+AGG | 0.577111 | 4_2:+50890992 | None:intergenic |
| TGAACTCAATGATTATAGCT+GGG | 0.579869 | 4_2:-50891215 | Msa0605130:CDS |
| AAACTGAAAGATATCATACA+AGG | 0.580876 | 4_2:-50891283 | Msa0605130:CDS |
| TTTCTGTACAGTTGGTTGTG+TGG | 0.585716 | 4_2:-50891472 | Msa0605130:intron |
| ATAGTGAATTGAGAAGAAGA+AGG | 0.587832 | 4_2:+50893957 | None:intergenic |
| AAGTAAACGCATCAGATGCA+TGG | 0.588761 | 4_2:-50892142 | Msa0605130:CDS |
| GTGGATGAATATCATGACTC+TGG | 0.592583 | 4_2:-50892751 | Msa0605130:CDS |
| TGTGCTGTGTTGTGTGTGTG+TGG | 0.593815 | 4_2:-50894084 | Msa0605130:five_prime_UTR |
| CTTAATCAGTCAGAAGAGAG+TGG | 0.594834 | 4_2:-50889982 | Msa0605130:CDS |
| CAAACGCATATGAATATGAA+AGG | 0.599466 | 4_2:+50891152 | None:intergenic |
| CGACGACAAAAGTGAAGGGA+AGG | 0.599701 | 4_2:+50894050 | None:intergenic |
| ATTCCGACGACAAAAGTGAA+GGG | 0.601275 | 4_2:+50894046 | None:intergenic |
| ATCAAGAGAAATCAGCTGAG+CGG | 0.602973 | 4_2:-50891384 | Msa0605130:CDS |
| TTCTTTGTCAAGGTAAACGA+GGG | 0.608990 | 4_2:-50892168 | Msa0605130:CDS |
| AATTCCGACGACAAAAGTGA+AGG | 0.611696 | 4_2:+50894045 | None:intergenic |
| GGAGTATTGATAATCTTCAT+CGG | 0.611843 | 4_2:+50893904 | None:intergenic |
| AGTAATGTGTGAAATTTGCA+TGG | 0.612800 | 4_2:-50892710 | Msa0605130:CDS |
| TCCCACATCAAACACGAACA+GGG | 0.614215 | 4_2:+50891865 | None:intergenic |
| GCAGCGGGAGCAATAGAAGA+GGG | 0.626117 | 4_2:+50893812 | None:intergenic |
| TACTTGACCAAGTATGATCA+CGG | 0.628425 | 4_2:+50891437 | None:intergenic |
| AGCAGCGGGAGCAATAGAAG+AGG | 0.631344 | 4_2:+50893811 | None:intergenic |
| ATTTATATGGTGCTATACTG+TGG | 0.634097 | 4_2:+50890767 | None:intergenic |
| AGTATAGCTGGTCACAGCTG+TGG | 0.637100 | 4_2:-50891418 | Msa0605130:CDS |
| TCCAAAGTGCCACAAACCGG+TGG | 0.641185 | 4_2:-50891773 | Msa0605130:CDS |
| GGGAATGCAATTCGTGTTGG+GGG | 0.651226 | 4_2:-50891964 | Msa0605130:CDS |
| CCCACATCAAACACGAACAG+GGG | 0.653511 | 4_2:+50891866 | None:intergenic |
| ATTATTTGGATTGGATCGAG+GGG | 0.658616 | 4_2:+50893995 | None:intergenic |
| GAAGGAAGGAACCTGAGCAG+CGG | 0.659810 | 4_2:+50893796 | None:intergenic |
| TTATTTGGATTGGATCGAGG+GGG | 0.659930 | 4_2:+50893996 | None:intergenic |
| TTTCTTTGTCAAGGTAAACG+AGG | 0.661438 | 4_2:-50892169 | Msa0605130:CDS |
| CGAATTGCATTCCCACAATG+TGG | 0.661456 | 4_2:+50891973 | None:intergenic |
| GGGTGATGATGACTTGTGTG+AGG | 0.663158 | 4_2:-50891944 | Msa0605130:CDS |
| ACACTTGCAGGTGATTACGA+AGG | 0.665460 | 4_2:-50893038 | Msa0605130:intron |
| CCACATCAAACACGAACAGG+GGG | 0.666654 | 4_2:+50891867 | None:intergenic |
| AACTGAAAGATATCATACAA+GGG | 0.667662 | 4_2:-50891282 | Msa0605130:CDS |
| GTATTGATAATCTTCATCGG+TGG | 0.686161 | 4_2:+50893907 | None:intergenic |
| GTCGAAGAAGAAGATTCCGT+CGG | 0.701998 | 4_2:-50893872 | Msa0605130:CDS |
| AAGCGTGCCAGAGAAGAAGG+TGG | 0.717667 | 4_2:-50889946 | Msa0605130:CDS |
| TGTGAGGTAGAATGTTCATG+TGG | 0.730408 | 4_2:-50891928 | Msa0605130:CDS |
| GAAGCAACAAGAATGGACTG+TGG | 0.810129 | 4_2:-50892670 | Msa0605130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAAAAAAT+AGG | + | chr4_2:50891719-50891738 | None:intergenic | 0.0% |
| !! | CGAATAAAAAAAAAAAAAAA+AGG | + | chr4_2:50890259-50890278 | None:intergenic | 10.0% |
| !!! | TCTATGGTTATATATTTTAT+TGG | - | chr4_2:50890666-50890685 | Msa0605130:intron | 15.0% |
| !! | AAAAAAAAAAAAACACTAAC+AGG | + | chr4_2:50891380-50891399 | None:intergenic | 15.0% |
| !!! | TTTTGAAGAAGAAAAAATAA+GGG | + | chr4_2:50891419-50891438 | None:intergenic | 15.0% |
| !!! | ATTTTGAAGAAGAAAAAATA+AGG | + | chr4_2:50891420-50891439 | None:intergenic | 15.0% |
| !! | AAGAAACATAAATTATTTCA+TGG | + | chr4_2:50892373-50892392 | None:intergenic | 15.0% |
| !! | ATGAAATAATTTATGTTTCT+TGG | - | chr4_2:50892372-50892391 | Msa0605130:intron | 15.0% |
| !! | AGATTAGGGTTTATATTATT+TGG | + | chr4_2:50890029-50890048 | None:intergenic | 20.0% |
| !!! | TTGATTAAAATTTGGAACTT+TGG | - | chr4_2:50890365-50890384 | Msa0605130:intron | 20.0% |
| !!! | TTTTTTTTTTGTTGAGTTTC+TGG | - | chr4_2:50890402-50890421 | Msa0605130:intron | 20.0% |
| !!! | TTTTGTGTTTATTTAGTCTA+TGG | - | chr4_2:50890650-50890669 | Msa0605130:intron | 20.0% |
| !!! | TTGAAATGTTTCTGTTATTA+TGG | - | chr4_2:50890802-50890821 | Msa0605130:CDS | 20.0% |
| !!! | TTTGAAGTTTATGTAGAAAA+AGG | - | chr4_2:50891199-50891218 | Msa0605130:CDS | 20.0% |
| !! | TTGAAGTTTATGTAGAAAAA+GGG | - | chr4_2:50891200-50891219 | Msa0605130:CDS | 20.0% |
| !! | TTTCTTCTTCAAAATTTCAT+CGG | - | chr4_2:50891425-50891444 | Msa0605130:CDS | 20.0% |
| !! | TTGTTGTATGTATCATAATA+TGG | - | chr4_2:50892465-50892484 | Msa0605130:intron | 20.0% |
| !! | CATAAGTTTAGCATATTTAA+AGG | + | chr4_2:50893028-50893047 | None:intergenic | 20.0% |
| !! | CTTTAAATATGCTAAACTTA+TGG | - | chr4_2:50893026-50893045 | Msa0605130:CDS | 20.0% |
| !! | TTATTGGATTCTATTAATCT+CGG | - | chr4_2:50893211-50893230 | Msa0605130:intron | 20.0% |
| !!! | AAGTAATGGAAAATTAATCA+TGG | + | chr4_2:50893590-50893609 | None:intergenic | 20.0% |
| !! | TTAATAAAACCACTGTTAAT+TGG | - | chr4_2:50893690-50893709 | Msa0605130:intron | 20.0% |
| !! | TAATAAAACCACTGTTAATT+GGG | - | chr4_2:50893691-50893710 | Msa0605130:intron | 20.0% |
| !! | GCTCAAGATATAAATTAATT+TGG | + | chr4_2:50893871-50893890 | None:intergenic | 20.0% |
| ! | AGGGTTTATATTATTTGGAT+TGG | + | chr4_2:50890024-50890043 | None:intergenic | 25.0% |
| ! | AATGAAAATGAAAAGGTTGA+AGG | + | chr4_2:50890232-50890251 | None:intergenic | 25.0% |
| ! | AGGTTTGAATGAAAATGAAA+AGG | + | chr4_2:50890239-50890258 | None:intergenic | 25.0% |
| ! | GTTTAGCTATTAAATTGTGA+CGG | + | chr4_2:50890460-50890479 | None:intergenic | 25.0% |
| ! | ATTCTTGCTCAATTTATTGA+TGG | - | chr4_2:50890604-50890623 | Msa0605130:intron | 25.0% |
| !!! | TGTTGTTTGTTGTTATTGTA+TGG | - | chr4_2:50890758-50890777 | Msa0605130:CDS | 25.0% |
| !!! | TTATTGTATGGTTTTAACGA+AGG | - | chr4_2:50890770-50890789 | Msa0605130:CDS | 25.0% |
| ! | TAATATTAACCACTAGAAGT+TGG | + | chr4_2:50890863-50890882 | None:intergenic | 25.0% |
| ! | TTCTGAATATGAATACACAT+AGG | + | chr4_2:50891085-50891104 | None:intergenic | 25.0% |
| ! | TATGTGTATTCATATTCAGA+AGG | - | chr4_2:50891084-50891103 | Msa0605130:CDS | 25.0% |
| ! | TAATGCTTATTTATCATCGT+TGG | - | chr4_2:50891161-50891180 | Msa0605130:CDS | 25.0% |
| ! | AATGCTTATTTATCATCGTT+GGG | - | chr4_2:50891162-50891181 | Msa0605130:CDS | 25.0% |
| ! | GAATTCTTAATGTTACATGA+TGG | - | chr4_2:50891462-50891481 | Msa0605130:CDS | 25.0% |
| ! | AAGATTCATATAACCAATCA+AGG | - | chr4_2:50891666-50891685 | Msa0605130:intron | 25.0% |
| ! | TGGAAAAATTACATCAACTT+TGG | - | chr4_2:50891786-50891805 | Msa0605130:CDS | 25.0% |
| ! | AAGACAATAAGAGAGTTAAA+TGG | - | chr4_2:50891999-50892018 | Msa0605130:CDS | 25.0% |
| ! | ATGAATCAGAAACTGTTAAT+TGG | - | chr4_2:50892188-50892207 | Msa0605130:intron | 25.0% |
| ! | TGAGAATATATAATGCAAGA+AGG | + | chr4_2:50892321-50892340 | None:intergenic | 25.0% |
| ! | TATGTATCATAATATGGATC+AGG | - | chr4_2:50892471-50892490 | Msa0605130:intron | 25.0% |
| ! | AAAATGGGCAAAATTATTAC+TGG | + | chr4_2:50892518-50892537 | None:intergenic | 25.0% |
| ! | AAACTGAAAGATATCATACA+AGG | - | chr4_2:50892724-50892743 | Msa0605130:CDS | 25.0% |
| ! | AACTGAAAGATATCATACAA+GGG | - | chr4_2:50892725-50892744 | Msa0605130:CDS | 25.0% |
| ! | ATTACAGAAGAAAAACATTC+TGG | - | chr4_2:50892757-50892776 | Msa0605130:CDS | 25.0% |
| ! | AATGAAACAGAACTTATTTG+AGG | - | chr4_2:50892936-50892955 | Msa0605130:intron | 25.0% |
| !!! | TGAAAAACTCTCTAAGATTT+TGG | - | chr4_2:50892987-50893006 | Msa0605130:intron | 25.0% |
| ! | TGAATTCTTATATTGAATGC+AGG | - | chr4_2:50893167-50893186 | Msa0605130:intron | 25.0% |
| ! | TATAGCACCATATAAATCAA+AGG | - | chr4_2:50893246-50893265 | Msa0605130:intron | 25.0% |
| ! | ATAGCACCATATAAATCAAA+GGG | - | chr4_2:50893247-50893266 | Msa0605130:intron | 25.0% |
| ! | TAAATGTCTATTGTTGGATT+TGG | - | chr4_2:50893327-50893346 | Msa0605130:intron | 25.0% |
| ! | TATATGCACAATACAAGTAA+TGG | + | chr4_2:50893604-50893623 | None:intergenic | 25.0% |
| !!! | CAGTGGTTTTATTAAAATCA+GGG | + | chr4_2:50893685-50893704 | None:intergenic | 25.0% |
| !!! | ACAGTGGTTTTATTAAAATC+AGG | + | chr4_2:50893686-50893705 | None:intergenic | 25.0% |
| ! | TTTCATGATTGAATTGTGTA+TGG | - | chr4_2:50893725-50893744 | Msa0605130:intron | 25.0% |
| ! | TATTATTTGGATTGGATCGA+GGG | + | chr4_2:50890016-50890035 | None:intergenic | 30.0% |
| ! | ATATTATTTGGATTGGATCG+AGG | + | chr4_2:50890017-50890036 | None:intergenic | 30.0% |
| ATAGTGAATTGAGAAGAAGA+AGG | + | chr4_2:50890053-50890072 | None:intergenic | 30.0% | |
| CAATTCACTATTCAATTCGA+TGG | - | chr4_2:50890062-50890081 | Msa0605130:intron | 30.0% | |
| !! | GGAGTATTGATAATCTTCAT+CGG | + | chr4_2:50890106-50890125 | None:intergenic | 30.0% |
| AAAATGAAAAGGTTGAAGGA+AGG | + | chr4_2:50890228-50890247 | None:intergenic | 30.0% | |
| !! | TTGGAACTTTGGAATTGATT+TGG | - | chr4_2:50890376-50890395 | Msa0605130:intron | 30.0% |
| !! | TTGTTTTGTATCGTCGTTTT+TGG | - | chr4_2:50890426-50890445 | Msa0605130:intron | 30.0% |
| !!! | TGTTTTGTATCGTCGTTTTT+GGG | - | chr4_2:50890427-50890446 | Msa0605130:intron | 30.0% |
| CCGTCAATTTCATATACTTA+GGG | + | chr4_2:50890506-50890525 | None:intergenic | 30.0% | |
| CCCTAAGTATATGAAATTGA+CGG | - | chr4_2:50890503-50890522 | Msa0605130:intron | 30.0% | |
| CCTAAGTATATGAAATTGAC+GGG | - | chr4_2:50890504-50890523 | Msa0605130:intron | 30.0% | |
| CTAAGTATATGAAATTGACG+GGG | - | chr4_2:50890505-50890524 | Msa0605130:intron | 30.0% | |
| TGGTTTAGAGACTAAATTGA+TGG | - | chr4_2:50890578-50890597 | Msa0605130:intron | 30.0% | |
| !!! | TTATGGTTGTAACTTTTTCG+TGG | - | chr4_2:50890819-50890838 | Msa0605130:CDS | 30.0% |
| ! | TTTTCGTGGTTTATAGTCTA+TGG | - | chr4_2:50890833-50890852 | Msa0605130:intron | 30.0% |
| AAAAATGTCAGTGCATAGAA+AGG | + | chr4_2:50890933-50890952 | None:intergenic | 30.0% | |
| AGTTTATGTAGAAAAAGGGA+AGG | - | chr4_2:50891204-50891223 | Msa0605130:CDS | 30.0% | |
| AGTAATGTGTGAAATTTGCA+TGG | - | chr4_2:50891297-50891316 | Msa0605130:CDS | 30.0% | |
| ! | TTAGTGGGTAACATTAAGAA+TGG | - | chr4_2:50891497-50891516 | Msa0605130:intron | 30.0% |
| ! | TTCATGAGGGTGTAAAAAAA+AGG | + | chr4_2:50891762-50891781 | None:intergenic | 30.0% |
| ! | ATTTTTCCAGTCTTTCATGA+GGG | + | chr4_2:50891775-50891794 | None:intergenic | 30.0% |
| ! | AATTTTTCCAGTCTTTCATG+AGG | + | chr4_2:50891776-50891795 | None:intergenic | 30.0% |
| TCTCTTATTGTCTTCAATGT+AGG | + | chr4_2:50891993-50892012 | None:intergenic | 30.0% | |
| GAAAAATGGTGGTTGTAATT+TGG | - | chr4_2:50892258-50892277 | Msa0605130:intron | 30.0% | |
| ! | AATTTGGTTAGCTGTATTTG+CGG | - | chr4_2:50892274-50892293 | Msa0605130:intron | 30.0% |
| ! | TCATGGAAAAGTATAATGAC+CGG | + | chr4_2:50892356-50892375 | None:intergenic | 30.0% |
| CAGTTTACTTTCAAGCTTAA+AGG | + | chr4_2:50892710-50892729 | None:intergenic | 30.0% | |
| TGAACTCAATGATTATAGCT+GGG | - | chr4_2:50892792-50892811 | Msa0605130:CDS | 30.0% | |
| GATTATAGCTGGGTAAATAA+TGG | - | chr4_2:50892802-50892821 | Msa0605130:CDS | 30.0% | |
| CAAACGCATATGAATATGAA+AGG | + | chr4_2:50892858-50892877 | None:intergenic | 30.0% | |
| !!! | AAAACTCTCTAAGATTTTGG+AGG | - | chr4_2:50892990-50893009 | Msa0605130:intron | 30.0% |
| ATGCTAAACTTATGGAGATA+AGG | - | chr4_2:50893034-50893053 | Msa0605130:intron | 30.0% | |
| !! | ATTTATATGGTGCTATACTG+TGG | + | chr4_2:50893243-50893262 | None:intergenic | 30.0% |
| ! | TCTATGCCCTTTGATTTATA+TGG | + | chr4_2:50893256-50893275 | None:intergenic | 30.0% |
| ACCTGTTATCAGTAACTAAT+TGG | - | chr4_2:50893441-50893460 | Msa0605130:intron | 30.0% | |
| CCTGTTATCAGTAACTAATT+GGG | - | chr4_2:50893442-50893461 | Msa0605130:intron | 30.0% | |
| CAGTAACTAATTGGGTTATA+TGG | - | chr4_2:50893450-50893469 | Msa0605130:intron | 30.0% | |
| ACTTGTATTGTGCATATATG+TGG | - | chr4_2:50893606-50893625 | Msa0605130:intron | 30.0% | |
| CTTGTATTGTGCATATATGT+GGG | - | chr4_2:50893607-50893626 | Msa0605130:intron | 30.0% | |
| TTAAAATCAGGGTGAAATCA+AGG | + | chr4_2:50893674-50893693 | None:intergenic | 30.0% | |
| TGAATGAATATATTGCATCG+TGG | - | chr4_2:50893751-50893770 | Msa0605130:intron | 30.0% | |
| AGTTGTTGTAACATGAAAAG+TGG | - | chr4_2:50893843-50893862 | Msa0605130:CDS | 30.0% | |
| !! | TTTTCTTCAGTTTGACTTTG+TGG | - | chr4_2:50893932-50893951 | Msa0605130:exon | 30.0% |
| AGAAATGTTACTGAGTGAAA+AGG | - | chr4_2:50893961-50893980 | Msa0605130:five_prime_UTR | 30.0% | |
| ! | ATTATTTGGATTGGATCGAG+GGG | + | chr4_2:50890015-50890034 | None:intergenic | 35.0% |
| GAGAAGAAGAAGGTAGATTA+GGG | + | chr4_2:50890043-50890062 | None:intergenic | 35.0% | |
| TGAGAAGAAGAAGGTAGATT+AGG | + | chr4_2:50890044-50890063 | None:intergenic | 35.0% | |
| ! | GTATTGATAATCTTCATCGG+TGG | + | chr4_2:50890103-50890122 | None:intergenic | 35.0% |
| CCCGTCAATTTCATATACTT+AGG | + | chr4_2:50890507-50890526 | None:intergenic | 35.0% | |
| CTAAATTGAAGTGAGAGTGA+TGG | - | chr4_2:50890558-50890577 | Msa0605130:intron | 35.0% | |
| TTATGTGAAGCTGAATCGTT+TGG | - | chr4_2:50890905-50890924 | Msa0605130:intron | 35.0% | |
| TATGTGAAGCTGAATCGTTT+GGG | - | chr4_2:50890906-50890925 | Msa0605130:intron | 35.0% | |
| GTGTATTCATATTCAGAAGG+AGG | - | chr4_2:50891087-50891106 | Msa0605130:CDS | 35.0% | |
| TATTTATCATCGTTGGGATG+TGG | - | chr4_2:50891168-50891187 | Msa0605130:CDS | 35.0% | |
| ! | ATTCTTGTTGCTTCATCACT+AGG | + | chr4_2:50891331-50891350 | None:intergenic | 35.0% |
| TAGTGATGAAGCAACAAGAA+TGG | - | chr4_2:50891330-50891349 | Msa0605130:CDS | 35.0% | |
| TAACGCTTGAAAACCTTGAT+TGG | + | chr4_2:50891682-50891701 | None:intergenic | 35.0% | |
| AAAAAATAGGCCATGTCATC+CGG | + | chr4_2:50891706-50891725 | None:intergenic | 35.0% | |
| TGTGTCCAACCTGTAAAAAT+AGG | + | chr4_2:50891815-50891834 | None:intergenic | 35.0% | |
| TTTCTTTGTCAAGGTAAACG+AGG | - | chr4_2:50891838-50891857 | Msa0605130:CDS | 35.0% | |
| TTCTTTGTCAAGGTAAACGA+GGG | - | chr4_2:50891839-50891858 | Msa0605130:CDS | 35.0% | |
| ! | CATGGAAAAGTATAATGACC+GGG | + | chr4_2:50892355-50892374 | None:intergenic | 35.0% |
| CAACCAACTGTACAGAAAAT+GGG | + | chr4_2:50892533-50892552 | None:intergenic | 35.0% | |
| ACAACCAACTGTACAGAAAA+TGG | + | chr4_2:50892534-50892553 | None:intergenic | 35.0% | |
| TACTTGACCAAGTATGATCA+CGG | + | chr4_2:50892573-50892592 | None:intergenic | 35.0% | |
| GGTACATGCATTATCATAAC+CGG | - | chr4_2:50892665-50892684 | Msa0605130:CDS | 35.0% | |
| CTGAACTCAATGATTATAGC+TGG | - | chr4_2:50892791-50892810 | Msa0605130:CDS | 35.0% | |
| ! | GCGTTTGCGTTTTATATGTT+TGG | - | chr4_2:50892871-50892890 | Msa0605130:CDS | 35.0% |
| AACAAATGTCAGAAGCTGAA+AGG | - | chr4_2:50892911-50892930 | Msa0605130:intron | 35.0% | |
| ACAAATGTCAGAAGCTGAAA+GGG | - | chr4_2:50892912-50892931 | Msa0605130:intron | 35.0% | |
| !! | GCATATTTAAAGGTGTCGAA+AGG | + | chr4_2:50893018-50893037 | None:intergenic | 35.0% |
| ! | TAAGTGTTGTGCTTTAGATG+AGG | - | chr4_2:50893108-50893127 | Msa0605130:intron | 35.0% |
| ! | GTGCATCGACAATGATTTAT+TGG | - | chr4_2:50893195-50893214 | Msa0605130:intron | 35.0% |
| GAGCAATAAAGCTGACAATA+CGG | - | chr4_2:50893303-50893322 | Msa0605130:intron | 35.0% | |
| AGCAATAAAGCTGACAATAC+GGG | - | chr4_2:50893304-50893323 | Msa0605130:intron | 35.0% | |
| TACGGGTAAATGTCTATTGT+TGG | - | chr4_2:50893321-50893340 | Msa0605130:intron | 35.0% | |
| CCCAATTAGTTACTGATAAC+AGG | + | chr4_2:50893445-50893464 | None:intergenic | 35.0% | |
| AAAACCACTGTTAATTGGGA+TGG | - | chr4_2:50893695-50893714 | Msa0605130:intron | 35.0% | |
| AAATCCATCCCAATTAACAG+TGG | + | chr4_2:50893702-50893721 | None:intergenic | 35.0% | |
| ATTCCGACGACAAAAGTGAA+GGG | + | chr4_2:50889964-50889983 | None:intergenic | 40.0% | |
| AATTCCGACGACAAAAGTGA+AGG | + | chr4_2:50889965-50889984 | None:intergenic | 40.0% | |
| ! | TTATTTGGATTGGATCGAGG+GGG | + | chr4_2:50890014-50890033 | None:intergenic | 40.0% |
| TTCTTCTTCGACGTCTTGAT+CGG | + | chr4_2:50890127-50890146 | None:intergenic | 40.0% | |
| ! | GTTTTCGTAGAATTCACCGA+CGG | + | chr4_2:50890154-50890173 | None:intergenic | 40.0% |
| ACTAAGTGAAGTCGTCTACA+TGG | + | chr4_2:50890723-50890742 | None:intergenic | 40.0% | |
| CGACTTCACTTAGTGTTGTA+AGG | - | chr4_2:50890729-50890748 | Msa0605130:CDS | 40.0% | |
| TCACTTAGTGTTGTAAGGCT+TGG | - | chr4_2:50890734-50890753 | Msa0605130:CDS | 40.0% | |
| TATGGTGATCCAACTTCTAG+TGG | - | chr4_2:50890851-50890870 | Msa0605130:intron | 40.0% | |
| !!! | TGAACTGTTTTGACACTTGC+AGG | - | chr4_2:50890957-50890976 | Msa0605130:CDS | 40.0% |
| !! | GAAGGCATTTATGTTTGCTC+AGG | - | chr4_2:50891222-50891241 | Msa0605130:CDS | 40.0% |
| GTGGATGAATATCATGACTC+TGG | - | chr4_2:50891256-50891275 | Msa0605130:CDS | 40.0% | |
| ATGGCGTATTGTCATGTTAG+TGG | - | chr4_2:50891481-50891500 | Msa0605130:intron | 40.0% | |
| TGGCGTATTGTCATGTTAGT+GGG | - | chr4_2:50891482-50891501 | Msa0605130:intron | 40.0% | |
| AATGGACCGCACATAAATAG+TGG | - | chr4_2:50891575-50891594 | Msa0605130:intron | 40.0% | |
| TTTACACCCTCATGAAAGAC+TGG | - | chr4_2:50891766-50891785 | Msa0605130:CDS | 40.0% | |
| GTCCAACCTGTAAAAATAGG+CGG | + | chr4_2:50891812-50891831 | None:intergenic | 40.0% | |
| GACACAGCATTTCTTTGTCA+AGG | - | chr4_2:50891829-50891848 | Msa0605130:CDS | 40.0% | |
| AAGTAAACGCATCAGATGCA+TGG | - | chr4_2:50891865-50891884 | Msa0605130:CDS | 40.0% | |
| GCTGTCGTAAGAACTTTACT+TGG | - | chr4_2:50891917-50891936 | Msa0605130:CDS | 40.0% | |
| CATACTTCTCTGCCATATCA+GGG | + | chr4_2:50891952-50891971 | None:intergenic | 40.0% | |
| TCATACTTCTCTGCCATATC+AGG | + | chr4_2:50891953-50891972 | None:intergenic | 40.0% | |
| TGTGAGGTAGAATGTTCATG+TGG | - | chr4_2:50892079-50892098 | Msa0605130:CDS | 40.0% | |
| GGAATACTCACCAAAATGCT+TGG | + | chr4_2:50892300-50892319 | None:intergenic | 40.0% | |
| ! | ATTCTCATCCAACTTGTTCC+CGG | - | chr4_2:50892334-50892353 | Msa0605130:intron | 40.0% |
| TATAATGACCGGGAACAAGT+TGG | + | chr4_2:50892345-50892364 | None:intergenic | 40.0% | |
| TTTGATCCATGTTGCCGTAA+AGG | - | chr4_2:50892428-50892447 | Msa0605130:intron | 40.0% | |
| CAACAACAACCAAGCCTTTA+CGG | + | chr4_2:50892445-50892464 | None:intergenic | 40.0% | |
| ! | TTGCCCATTTTCTGTACAGT+TGG | - | chr4_2:50892527-50892546 | Msa0605130:intron | 40.0% |
| TTTCTGTACAGTTGGTTGTG+TGG | - | chr4_2:50892535-50892554 | Msa0605130:intron | 40.0% | |
| CATACTTGGTCAAGTATAGC+TGG | - | chr4_2:50892577-50892596 | Msa0605130:intron | 40.0% | |
| ATCAAGAGAAATCAGCTGAG+CGG | - | chr4_2:50892623-50892642 | Msa0605130:intron | 40.0% | |
| ! | AGTCTGTGTGAGCTTTATAC+CGG | + | chr4_2:50892687-50892706 | None:intergenic | 40.0% |
| ! | GCTTTATTGCTCCAACAAAC+TGG | + | chr4_2:50893295-50893314 | None:intergenic | 40.0% |
| GAAGCAACGGAATAATACGA+GGG | + | chr4_2:50893379-50893398 | None:intergenic | 40.0% | |
| AGAAGCAACGGAATAATACG+AGG | + | chr4_2:50893380-50893399 | None:intergenic | 40.0% | |
| CAGCATAAAGAGAGAAGCAA+CGG | + | chr4_2:50893392-50893411 | None:intergenic | 40.0% | |
| GTCTCAACATGTACACTTTG+TGG | - | chr4_2:50893506-50893525 | Msa0605130:intron | 40.0% | |
| TGTACACTTTGTGGTCATGT+TGG | - | chr4_2:50893515-50893534 | Msa0605130:intron | 40.0% | |
| TGTGGGAGATCATAGTTGTA+TGG | - | chr4_2:50893624-50893643 | Msa0605130:intron | 40.0% | |
| GTGGGAGATCATAGTTGTAT+GGG | - | chr4_2:50893625-50893644 | Msa0605130:intron | 40.0% | |
| TGGGAGATCATAGTTGTATG+GGG | - | chr4_2:50893626-50893645 | Msa0605130:intron | 40.0% | |
| GATCATAGTTGTATGGGGAT+CGG | - | chr4_2:50893631-50893650 | Msa0605130:intron | 40.0% | |
| TGTATATATGCTGCAAGCGT+AGG | - | chr4_2:50893989-50894008 | Msa0605130:five_prime_UTR | 40.0% | |
| CTTAATCAGTCAGAAGAGAG+TGG | - | chr4_2:50894025-50894044 | Msa0605130:five_prime_UTR | 40.0% | |
| AAAAAAGCCACCTTCTTCTC+TGG | + | chr4_2:50894071-50894090 | None:intergenic | 40.0% | |
| TTTCTGTCTACAACTTCAGC+TGG | + | chr4_2:50894106-50894125 | None:intergenic | 40.0% | |
| TGTGTTGTGTGTGTGTGGTA+AGG | - | chr4_2:50889928-50889947 | Msa0605130:CDS | 45.0% | |
| !! | CTTCCCTTCACTTTTGTCGT+CGG | - | chr4_2:50889958-50889977 | Msa0605130:CDS | 45.0% |
| GTCGAAGAAGAAGATTCCGT+CGG | - | chr4_2:50890135-50890154 | Msa0605130:intron | 45.0% | |
| ACACTTGCAGGTGATTACGA+AGG | - | chr4_2:50890969-50890988 | Msa0605130:CDS | 45.0% | |
| GGAATCACTGATAGTTGCAC+AGG | - | chr4_2:50890990-50891009 | Msa0605130:CDS | 45.0% | |
| GCATTTATGTTTGCTCAGGC+TGG | - | chr4_2:50891226-50891245 | Msa0605130:CDS | 45.0% | |
| !! | GAAGCAACAAGAATGGACTG+TGG | - | chr4_2:50891337-50891356 | Msa0605130:CDS | 45.0% |
| GTGCGTGTCCACAAAATCAA+TGG | - | chr4_2:50891557-50891576 | Msa0605130:intron | 45.0% | |
| !!! | TGTGCGGTCCATTGATTTTG+TGG | + | chr4_2:50891568-50891587 | None:intergenic | 45.0% |
| GACCGCACATAAATAGTGGT+GGG | - | chr4_2:50891579-50891598 | Msa0605130:intron | 45.0% | |
| GACCCACCACTATTTATGTG+CGG | + | chr4_2:50891584-50891603 | None:intergenic | 45.0% | |
| !! | CAAGGTTTTCAAGCGTTAGC+CGG | - | chr4_2:50891684-50891703 | Msa0605130:intron | 45.0% |
| !!! | CTTTGGCCGCCTATTTTTAC+AGG | - | chr4_2:50891803-50891822 | Msa0605130:CDS | 45.0% |
| !! | TGGTAGAAAGCACCCTGATA+TGG | - | chr4_2:50891937-50891956 | Msa0605130:CDS | 45.0% |
| CGAATTGCATTCCCACAATG+TGG | + | chr4_2:50892037-50892056 | None:intergenic | 45.0% | |
| TGTGGGAATGCAATTCGTGT+TGG | - | chr4_2:50892040-50892059 | Msa0605130:CDS | 45.0% | |
| GTGGGAATGCAATTCGTGTT+GGG | - | chr4_2:50892041-50892060 | Msa0605130:CDS | 45.0% | |
| TGGGAATGCAATTCGTGTTG+GGG | - | chr4_2:50892042-50892061 | Msa0605130:CDS | 45.0% | |
| TCCCACATCAAACACGAACA+GGG | + | chr4_2:50892145-50892164 | None:intergenic | 45.0% | |
| !!! | CATTTTTCTCCACCGGTTTG+TGG | + | chr4_2:50892246-50892265 | None:intergenic | 45.0% |
| CACAAACCGGTGGAGAAAAA+TGG | - | chr4_2:50892244-50892263 | Msa0605130:intron | 45.0% | |
| AAACCGGTGGAGAAAAATGG+TGG | - | chr4_2:50892247-50892266 | Msa0605130:intron | 45.0% | |
| !! | CAACCACCATTTTTCTCCAC+CGG | + | chr4_2:50892253-50892272 | None:intergenic | 45.0% |
| ! | GTATTTGCGGCCAAGCATTT+TGG | - | chr4_2:50892287-50892306 | Msa0605130:intron | 45.0% |
| TCAAGAGAAATCAGCTGAGC+GGG | - | chr4_2:50892624-50892643 | Msa0605130:intron | 45.0% | |
| GGGCAAAAAGGGATCTCTAT+AGG | - | chr4_2:50892644-50892663 | Msa0605130:intron | 45.0% | |
| CTTCAGAGCTTCCAGTTTGT+TGG | - | chr4_2:50893281-50893300 | Msa0605130:intron | 45.0% | |
| GGAATAATACGAGGGAGTTG+CGG | + | chr4_2:50893371-50893390 | None:intergenic | 45.0% | |
| !!! | GTATGGGGATCGGTTAGTTT+TGG | - | chr4_2:50893641-50893660 | Msa0605130:intron | 45.0% |
| !!! | TTTATTTATTGATTAAAATT+TGG | - | chr4_2:50890357-50890376 | Msa0605130:intron | 5.0% |
| !!! | TATTTATTTATTTTTTTGAT+CGG | - | chr4_2:50891726-50891745 | Msa0605130:CDS | 5.0% |
| !!! | TATAGATTAATTTAATTTTA+TGG | - | chr4_2:50892400-50892419 | Msa0605130:intron | 5.0% |
| TGTGCTGTGTTGTGTGTGTG+TGG | - | chr4_2:50889923-50889942 | Msa0605130:CDS | 50.0% | |
| CGACGACAAAAGTGAAGGGA+AGG | + | chr4_2:50889960-50889979 | None:intergenic | 50.0% | |
| ! | ATATCATGACTCTGGCTCGC+TGG | - | chr4_2:50891264-50891283 | Msa0605130:CDS | 50.0% |
| GGACCGCACATAAATAGTGG+TGG | - | chr4_2:50891578-50891597 | Msa0605130:intron | 50.0% | |
| !!! | GGCCGCCTATTTTTACAGGT+TGG | - | chr4_2:50891807-50891826 | Msa0605130:CDS | 50.0% |
| GGGAATGCAATTCGTGTTGG+GGG | - | chr4_2:50892043-50892062 | Msa0605130:CDS | 50.0% | |
| ! | GGGTGATGATGACTTGTGTG+AGG | - | chr4_2:50892063-50892082 | Msa0605130:CDS | 50.0% |
| CCACATCAAACACGAACAGG+GGG | + | chr4_2:50892143-50892162 | None:intergenic | 50.0% | |
| CCCACATCAAACACGAACAG+GGG | + | chr4_2:50892144-50892163 | None:intergenic | 50.0% | |
| CCCCTGTTCGTGTTTGATGT+GGG | - | chr4_2:50892141-50892160 | Msa0605130:CDS | 50.0% | |
| CTCCCACATCAAACACGAAC+AGG | + | chr4_2:50892146-50892165 | None:intergenic | 50.0% | |
| GTGTTTGATGTGGGAGCTCT+GGG | - | chr4_2:50892150-50892169 | Msa0605130:CDS | 50.0% | |
| ! | CTGTCCAAAGTGCCACAAAC+CGG | - | chr4_2:50892231-50892250 | Msa0605130:intron | 50.0% |
| TCCATGTTGCCGTAAAGGCT+TGG | - | chr4_2:50892433-50892452 | Msa0605130:intron | 50.0% | |
| ACCAAGCCTTTACGGCAACA+TGG | + | chr4_2:50892437-50892456 | None:intergenic | 50.0% | |
| CTGTACAGTTGGTTGTGTGG+TGG | - | chr4_2:50892538-50892557 | Msa0605130:intron | 50.0% | |
| CTACTGGCCGTGATCATACT+TGG | - | chr4_2:50892563-50892582 | Msa0605130:intron | 50.0% | |
| AGTATAGCTGGTCACAGCTG+TGG | - | chr4_2:50892589-50892608 | Msa0605130:intron | 50.0% | |
| AATCAGCTGAGCGGGCAAAA+AGG | - | chr4_2:50892632-50892651 | Msa0605130:intron | 50.0% | |
| ATCAGCTGAGCGGGCAAAAA+GGG | - | chr4_2:50892633-50892652 | Msa0605130:intron | 50.0% | |
| GGATCAACAGCAGCAGTTAG+AGG | - | chr4_2:50892957-50892976 | Msa0605130:intron | 50.0% | |
| ! | GAGGGGGTGTGATCGGTAAA+AGG | + | chr4_2:50889998-50890017 | None:intergenic | 55.0% |
| ! | TTGGATCGAGGGGGTGTGAT+CGG | + | chr4_2:50890005-50890024 | None:intergenic | 55.0% |
| GCAGCGGGAGCAATAGAAGA+GGG | + | chr4_2:50890198-50890217 | None:intergenic | 55.0% | |
| AGCAGCGGGAGCAATAGAAG+AGG | + | chr4_2:50890199-50890218 | None:intergenic | 55.0% | |
| TTCTATTGCTCCCGCTGCTC+AGG | - | chr4_2:50890200-50890219 | Msa0605130:intron | 55.0% | |
| AAGGAAGGAACCTGAGCAGC+GGG | + | chr4_2:50890213-50890232 | None:intergenic | 55.0% | |
| GAAGGAAGGAACCTGAGCAG+CGG | + | chr4_2:50890214-50890233 | None:intergenic | 55.0% | |
| ! | TGCTCAGGCTGGTGTTAGTG+TGG | - | chr4_2:50891237-50891256 | Msa0605130:CDS | 55.0% |
| CAAGCGTTAGCCGGATGACA+TGG | - | chr4_2:50891693-50891712 | Msa0605130:intron | 55.0% | |
| TTCCCACAATGTGGCGTGCT+CGG | + | chr4_2:50892028-50892047 | None:intergenic | 55.0% | |
| CCCCCTGTTCGTGTTTGATG+TGG | - | chr4_2:50892140-50892159 | Msa0605130:CDS | 55.0% | |
| CGTGTTTGATGTGGGAGCTC+TGG | - | chr4_2:50892149-50892168 | Msa0605130:CDS | 55.0% | |
| CGGTTTGTGGCACTTTGGAC+AGG | + | chr4_2:50892233-50892252 | None:intergenic | 55.0% | |
| ! | TCCAAAGTGCCACAAACCGG+TGG | - | chr4_2:50892234-50892253 | Msa0605130:intron | 55.0% |
| !! | TCCACCGGTTTGTGGCACTT+TGG | + | chr4_2:50892238-50892257 | None:intergenic | 55.0% |
| ! | TGGTTGTGTGGTGGAGCTAC+TGG | - | chr4_2:50892547-50892566 | Msa0605130:intron | 55.0% |
| CGTAAGCGTGCCAGAGAAGA+AGG | - | chr4_2:50894058-50894077 | Msa0605130:five_prime_UTR | 55.0% | |
| AAGCGTGCCAGAGAAGAAGG+TGG | - | chr4_2:50894061-50894080 | Msa0605130:five_prime_UTR | 55.0% | |
| GGAGGACTTGCGCAGAGTGA+TGG | - | chr4_2:50891105-50891124 | Msa0605130:CDS | 60.0% | |
| TGTCCGAGCACGCCACATTG+TGG | - | chr4_2:50892022-50892041 | Msa0605130:CDS | 60.0% | |
| GTCCGAGCACGCCACATTGT+GGG | - | chr4_2:50892023-50892042 | Msa0605130:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50889900 | 50894129 | 50889900 | ID=Msa0605130;Name=Msa0605130 |
| chr4_2 | mRNA | 50889900 | 50894129 | 50889900 | ID=Msa0605130-mRNA-1;Parent=Msa0605130;Name=Msa0605130-mRNA-1;_AED=0.19;_eAED=0.19;_QI=181|0.83|0.85|1|1|1|7|0|599 |
| chr4_2 | exon | 50889900 | 50890066 | 50889900 | ID=Msa0605130-mRNA-1:exon:12144;Parent=Msa0605130-mRNA-1 |
| chr4_2 | exon | 50890704 | 50890840 | 50890704 | ID=Msa0605130-mRNA-1:exon:12143;Parent=Msa0605130-mRNA-1 |
| chr4_2 | exon | 50890923 | 50891483 | 50890923 | ID=Msa0605130-mRNA-1:exon:12142;Parent=Msa0605130-mRNA-1 |
| chr4_2 | exon | 50891721 | 50892204 | 50891721 | ID=Msa0605130-mRNA-1:exon:12141;Parent=Msa0605130-mRNA-1 |
| chr4_2 | exon | 50892650 | 50892926 | 50892650 | ID=Msa0605130-mRNA-1:exon:12140;Parent=Msa0605130-mRNA-1 |
| chr4_2 | exon | 50893018 | 50893050 | 50893018 | ID=Msa0605130-mRNA-1:exon:12139;Parent=Msa0605130-mRNA-1 |
| chr4_2 | exon | 50893808 | 50894129 | 50893808 | ID=Msa0605130-mRNA-1:exon:12138;Parent=Msa0605130-mRNA-1 |
| chr4_2 | five_prime_UTR | 50893949 | 50894129 | 50893949 | ID=Msa0605130-mRNA-1:five_prime_utr;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50893808 | 50893948 | 50893808 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50893018 | 50893050 | 50893018 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50892650 | 50892926 | 50892650 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50891721 | 50892204 | 50891721 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50890923 | 50891483 | 50890923 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50890704 | 50890840 | 50890704 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| chr4_2 | CDS | 50889900 | 50890066 | 50889900 | ID=Msa0605130-mRNA-1:cds;Parent=Msa0605130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
