Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605190 | KEH30386.1 | 98.998 | 599 | 6 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605190 | sp|Q949V6|ARI1_ARATH | 61.626 | 615 | 199 | 11 | 3 | 599 | 2 | 597 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605190 | A0A072ULZ9 | 98.998 | 599 | 6 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1237 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037120 | Msa0605190 | 0.820297 | 7.389582e-53 | -8.615850e-47 |
| Msa0051210 | Msa0605190 | 0.806440 | 8.216414e-50 | -8.615850e-47 |
| Msa0051450 | Msa0605190 | 0.800039 | 1.737631e-48 | -8.615850e-47 |
| Msa0064920 | Msa0605190 | 0.809017 | 2.328945e-50 | -8.615850e-47 |
| Msa0084340 | Msa0605190 | 0.826132 | 3.208228e-54 | -8.615850e-47 |
| Msa0605130 | Msa0605190 | 0.943244 | 1.706766e-102 | -8.615850e-47 |
| Msa0605190 | Msa0808100 | 0.804380 | 2.221249e-49 | -8.615850e-47 |
| Msa0605190 | Msa0834750 | 0.805158 | 1.527736e-49 | -8.615850e-47 |
| Msa0605190 | Msa1002050 | 0.816389 | 5.671312e-52 | -8.615850e-47 |
| Msa0605190 | Msa1041400 | 0.804345 | 2.259148e-49 | -8.615850e-47 |
| Msa0605190 | Msa1377080 | 0.801229 | 9.937627e-49 | -8.615850e-47 |
| Msa0605190 | Msa1390350 | 0.821758 | 3.405617e-53 | -8.615850e-47 |
| Msa0605190 | Msa1401460 | 0.819267 | 1.270647e-52 | -8.615850e-47 |
| Msa0131290 | Msa0605190 | 0.821526 | 3.852695e-53 | -8.615850e-47 |
| Msa0149890 | Msa0605190 | 0.817219 | 3.694300e-52 | -8.615850e-47 |
| Msa0177170 | Msa0605190 | 0.802919 | 4.464152e-49 | -8.615850e-47 |
| Msa0183980 | Msa0605190 | 0.811406 | 7.112429e-51 | -8.615850e-47 |
| Msa0189110 | Msa0605190 | 0.804440 | 2.157736e-49 | -8.615850e-47 |
| Msa0202730 | Msa0605190 | 0.803595 | 3.234452e-49 | -8.615850e-47 |
| Msa0206330 | Msa0605190 | 0.818268 | 2.141941e-52 | -8.615850e-47 |
| Msa0231240 | Msa0605190 | 0.817330 | 3.488157e-52 | -8.615850e-47 |
| Msa0245860 | Msa0605190 | 0.806154 | 9.438902e-50 | -8.615850e-47 |
| Msa0249100 | Msa0605190 | 0.803231 | 3.847720e-49 | -8.615850e-47 |
| Msa0280150 | Msa0605190 | 0.826065 | 3.327642e-54 | -8.615850e-47 |
| Msa0308560 | Msa0605190 | 0.811469 | 6.891932e-51 | -8.615850e-47 |
| Msa0323370 | Msa0605190 | 0.815241 | 1.022327e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605190 | MtrunA17_Chr4g0034371 | 99.081 | 544 | 5 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1129 |
| Msa0605190 | MtrunA17_Chr4g0033361 | 30.143 | 491 | 303 | 12 | 48 | 520 | 61 | 529 | 1.77e-61 | 214 |
| Msa0605190 | MtrunA17_Chr2g0329221 | 28.717 | 491 | 310 | 12 | 48 | 520 | 71 | 539 | 2.48e-60 | 211 |
| Msa0605190 | MtrunA17_Chr3g0110331 | 28.776 | 490 | 306 | 12 | 49 | 520 | 57 | 521 | 5.00e-58 | 204 |
| Msa0605190 | MtrunA17_Chr3g0110341 | 29.142 | 501 | 309 | 16 | 49 | 533 | 84 | 554 | 1.55e-54 | 195 |
| Msa0605190 | MtrunA17_Chr4g0038181 | 27.824 | 478 | 273 | 16 | 48 | 495 | 7 | 442 | 6.54e-44 | 162 |
| Msa0605190 | MtrunA17_Chr5g0447801 | 29.452 | 292 | 175 | 7 | 245 | 520 | 2 | 278 | 5.64e-32 | 125 |
| Msa0605190 | MtrunA17_Chr4g0034361 | 98.148 | 54 | 1 | 0 | 546 | 599 | 1 | 54 | 2.40e-29 | 110 |
| Msa0605190 | MtrunA17_Chr4g0038201 | 23.269 | 361 | 186 | 11 | 19 | 356 | 7 | 299 | 6.03e-23 | 100 |
| Msa0605190 | MtrunA17_Chr1g0164621 | 29.592 | 196 | 124 | 8 | 126 | 315 | 1245 | 1432 | 7.34e-14 | 75.1 |
| Msa0605190 | MtrunA17_Chr5g0410911 | 24.000 | 225 | 120 | 6 | 126 | 318 | 322 | 527 | 1.74e-13 | 73.6 |
| Msa0605190 | MtrunA17_Chr3g0082091 | 29.082 | 196 | 125 | 8 | 126 | 315 | 1243 | 1430 | 2.42e-13 | 73.6 |
| Msa0605190 | MtrunA17_Chr3g0123681 | 30.256 | 195 | 124 | 7 | 126 | 315 | 1523 | 1710 | 2.33e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605190 | AT4G34370.1 | 61.626 | 615 | 199 | 11 | 3 | 599 | 2 | 597 | 0.0 | 770 |
| Msa0605190 | AT2G16090.1 | 61.639 | 610 | 204 | 10 | 1 | 598 | 1 | 592 | 0.0 | 762 |
| Msa0605190 | AT2G16090.4 | 61.688 | 616 | 188 | 11 | 1 | 598 | 1 | 586 | 0.0 | 757 |
| Msa0605190 | AT2G16090.3 | 66.171 | 538 | 164 | 8 | 1 | 533 | 1 | 525 | 0.0 | 735 |
| Msa0605190 | AT2G16090.2 | 63.603 | 544 | 175 | 7 | 66 | 598 | 1 | 532 | 0.0 | 713 |
| Msa0605190 | AT2G16090.5 | 69.068 | 472 | 135 | 5 | 66 | 533 | 1 | 465 | 0.0 | 685 |
| Msa0605190 | AT3G27710.1 | 59.921 | 509 | 190 | 8 | 29 | 533 | 26 | 524 | 0.0 | 632 |
| Msa0605190 | AT4G34370.2 | 65.393 | 445 | 123 | 9 | 171 | 599 | 1 | 430 | 0.0 | 589 |
| Msa0605190 | AT3G27720.1 | 63.450 | 342 | 119 | 4 | 194 | 533 | 147 | 484 | 2.43e-160 | 468 |
| Msa0605190 | AT2G31510.1 | 29.468 | 526 | 328 | 13 | 2 | 509 | 18 | 518 | 2.04e-65 | 224 |
| Msa0605190 | AT2G31510.2 | 30.675 | 489 | 301 | 12 | 2 | 477 | 18 | 481 | 1.22e-63 | 218 |
| Msa0605190 | AT2G31510.3 | 29.764 | 467 | 289 | 11 | 60 | 509 | 2 | 446 | 2.20e-63 | 217 |
| Msa0605190 | AT2G31770.1 | 27.379 | 515 | 334 | 15 | 14 | 509 | 3 | 496 | 3.26e-63 | 218 |
| Msa0605190 | AT1G05890.1 | 29.264 | 516 | 318 | 14 | 14 | 509 | 23 | 511 | 2.32e-62 | 216 |
| Msa0605190 | AT1G05890.2 | 28.958 | 480 | 298 | 11 | 48 | 509 | 99 | 553 | 2.53e-60 | 211 |
| Msa0605190 | AT2G31780.1 | 31.250 | 416 | 255 | 13 | 24 | 430 | 42 | 435 | 1.79e-59 | 205 |
| Msa0605190 | AT2G31760.1 | 28.846 | 468 | 301 | 14 | 48 | 509 | 45 | 486 | 4.53e-59 | 206 |
| Msa0605190 | AT1G65430.1 | 28.442 | 552 | 339 | 16 | 2 | 526 | 4 | 526 | 4.28e-58 | 204 |
| Msa0605190 | AT5G08730.1 | 26.233 | 446 | 284 | 16 | 48 | 481 | 10 | 422 | 5.79e-32 | 130 |
| Msa0605190 | AT1G05880.2 | 22.153 | 483 | 328 | 13 | 46 | 514 | 39 | 487 | 5.76e-27 | 115 |
| Msa0605190 | AT1G05880.3 | 23.007 | 439 | 295 | 12 | 46 | 475 | 39 | 443 | 7.29e-26 | 111 |
| Msa0605190 | AT1G05880.1 | 22.107 | 484 | 320 | 13 | 46 | 514 | 39 | 480 | 3.26e-25 | 109 |
| Msa0605190 | AT5G63750.1 | 24.266 | 511 | 303 | 20 | 48 | 501 | 11 | 494 | 1.46e-19 | 92.8 |
| Msa0605190 | AT5G63730.1 | 27.719 | 285 | 181 | 11 | 48 | 315 | 11 | 287 | 3.32e-17 | 85.5 |
| Msa0605190 | AT5G63760.1 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.25e-15 | 80.1 |
| Msa0605190 | AT5G63760.3 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.25e-15 | 80.1 |
| Msa0605190 | AT5G63760.2 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.25e-15 | 80.1 |
| Msa0605190 | AT3G14250.1 | 29.864 | 221 | 128 | 11 | 125 | 333 | 94 | 299 | 3.08e-15 | 77.4 |
| Msa0605190 | AT1G32340.1 | 26.360 | 239 | 142 | 7 | 109 | 323 | 361 | 589 | 1.26e-14 | 77.8 |
| Msa0605190 | AT5G10370.1 | 26.633 | 199 | 137 | 6 | 120 | 315 | 1558 | 1750 | 2.44e-13 | 73.9 |
| Msa0605190 | AT2G26135.1 | 30.882 | 204 | 123 | 9 | 126 | 320 | 153 | 347 | 1.00e-12 | 70.5 |
| Msa0605190 | AT4G01020.1 | 26.154 | 195 | 131 | 7 | 126 | 315 | 1561 | 1747 | 2.37e-12 | 70.9 |
| Msa0605190 | AT2G26130.1 | 29.327 | 208 | 122 | 9 | 126 | 320 | 159 | 354 | 8.94e-12 | 67.8 |
| Msa0605190 | AT5G63760.4 | 33.835 | 133 | 71 | 7 | 199 | 315 | 2 | 133 | 1.66e-11 | 66.6 |
Find 119 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTACTTTCAAGCTTAA+AGG | 0.141595 | 4_2:+50944876 | None:intergenic |
| AGATTAGGGTTTATATTATT+TGG | 0.154369 | 4_2:+50947548 | None:intergenic |
| TTTGAAGTTTATGTAGAAAA+AGG | 0.183191 | 4_2:-50946382 | Msa0605190:CDS |
| CATAAGTTTAGCATATTTAA+AGG | 0.183354 | 4_2:+50944558 | None:intergenic |
| GTGCATCGACAATGATTTAT+TGG | 0.189539 | 4_2:-50944388 | Msa0605190:CDS |
| TCTATGCCCTTTGATTTATA+TGG | 0.230617 | 4_2:+50944330 | None:intergenic |
| CTTTAAATATGCTAAACTTA+TGG | 0.276659 | 4_2:-50944557 | Msa0605190:CDS |
| TCATACTTCTCTGCCATATC+AGG | 0.290091 | 4_2:+50945633 | None:intergenic |
| ATGAATCAGAAACTGTTAAT+TGG | 0.291470 | 4_2:-50945395 | Msa0605190:CDS |
| GTATTTGCGGCCAAGCATTT+TGG | 0.310007 | 4_2:-50945296 | Msa0605190:intron |
| CTTCAGAGCTTCCAGTTTGT+TGG | 0.314668 | 4_2:-50944302 | Msa0605190:CDS |
| TTGAGAAGAAAGGTAGATTA+GGG | 0.322762 | 4_2:+50947534 | None:intergenic |
| GTGGGAATGCAATTCGTGTT+GGG | 0.340005 | 4_2:-50945542 | Msa0605190:CDS |
| GATTATAGCTGGGTAAATAA+TGG | 0.340008 | 4_2:-50944781 | Msa0605190:CDS |
| CGTGTTTGATGTGGGAGCTC+TGG | 0.345421 | 4_2:-50945434 | Msa0605190:CDS |
| AATCAGCTGAGCGGGCAAAA+AGG | 0.360614 | 4_2:-50944951 | Msa0605190:CDS |
| GCTTTATTGCTCCAACAAAC+TGG | 0.371482 | 4_2:+50944291 | None:intergenic |
| ATTGAGAAGAAAGGTAGATT+AGG | 0.380756 | 4_2:+50947533 | None:intergenic |
| CTCCCACATCAAACACGAAC+AGG | 0.384521 | 4_2:+50945440 | None:intergenic |
| AGGGTTTATATTATTTGGAT+TGG | 0.385627 | 4_2:+50947553 | None:intergenic |
| TCTCTTATTGTCTTCAATGT+AGG | 0.390159 | 4_2:+50945593 | None:intergenic |
| TAATGCTTATTTATCATCGT+TGG | 0.400236 | 4_2:-50946420 | Msa0605190:CDS |
| TTCTATTGCTCCCGCTGCTC+AGG | 0.411819 | 4_2:-50947376 | Msa0605190:intron |
| AAGACAATAAGAGAGTTAAA+TGG | 0.413854 | 4_2:-50945584 | Msa0605190:CDS |
| CTGAACTCAATGATTATAGC+TGG | 0.414125 | 4_2:-50944792 | Msa0605190:CDS |
| TGGTAGAAAGCACCCTGATA+TGG | 0.419498 | 4_2:-50945646 | Msa0605190:CDS |
| ATTCTTGTTGCTTCATCACT+AGG | 0.422785 | 4_2:+50946253 | None:intergenic |
| GGATCAACAGCAGCAGTTAG+AGG | 0.425749 | 4_2:-50944626 | Msa0605190:CDS |
| GCATTTATGTTTGCTCAGGC+TGG | 0.428355 | 4_2:-50946355 | Msa0605190:CDS |
| AATGCTTATTTATCATCGTT+GGG | 0.432983 | 4_2:-50946419 | Msa0605190:CDS |
| TTCCCACAATGTGGCGTGCT+CGG | 0.435694 | 4_2:+50945558 | None:intergenic |
| CGGTTTGTGGCACTTTGGAC+AGG | 0.440450 | 4_2:+50945353 | None:intergenic |
| TTCTTCTTCGACGTCTTGAT+CGG | 0.440913 | 4_2:+50947452 | None:intergenic |
| CTACTGGCCGTGATCATACT+TGG | 0.451535 | 4_2:-50945020 | Msa0605190:CDS |
| GAAGGCATTTATGTTTGCTC+AGG | 0.464709 | 4_2:-50946359 | Msa0605190:CDS |
| TGGTTGTGTGGTGGAGCTAC+TGG | 0.468440 | 4_2:-50945036 | Msa0605190:CDS |
| ATGCTAAACTTATGGAGATA+AGG | 0.473847 | 4_2:-50944549 | Msa0605190:CDS |
| TATTTATCATCGTTGGGATG+TGG | 0.476215 | 4_2:-50946413 | Msa0605190:CDS |
| CAATTCACTATTCAATTCGA+TGG | 0.481462 | 4_2:-50947514 | Msa0605190:exon |
| GGTACATGCATTATCATAAC+CGG | 0.485862 | 4_2:-50944918 | Msa0605190:CDS |
| ACAAATGTCAGAAGCTGAAA+GGG | 0.487072 | 4_2:-50944671 | Msa0605190:CDS |
| AGAAATGTTACTGAGTGAAA+AGG | 0.489380 | 4_2:-50943619 | Msa0605190:CDS |
| AATGAAACAGAACTTATTTG+AGG | 0.494812 | 4_2:-50944647 | Msa0605190:CDS |
| TAGTGATGAAGCAACAAGAA+TGG | 0.496144 | 4_2:-50946251 | Msa0605190:CDS |
| GAGCAATAAAGCTGACAATA+CGG | 0.496778 | 4_2:-50944280 | Msa0605190:CDS |
| CGTAAGCGTGCCAGAGAAGA+AGG | 0.497557 | 4_2:-50943522 | Msa0605190:CDS |
| GTCCGAGCACGCCACATTGT+GGG | 0.497626 | 4_2:-50945560 | Msa0605190:CDS |
| AGAAAGCAAAACAAAGCAAA+GGG | 0.498108 | 4_2:-50947682 | None:intergenic |
| CATACTTGGTCAAGTATAGC+TGG | 0.500185 | 4_2:-50945006 | Msa0605190:CDS |
| CTGTCCAAAGTGCCACAAAC+CGG | 0.503790 | 4_2:-50945352 | Msa0605190:CDS |
| TATTATTTGGATTGGATCGA+GGG | 0.504087 | 4_2:+50947561 | None:intergenic |
| TCAAGAGAAATCAGCTGAGC+GGG | 0.505415 | 4_2:-50944959 | Msa0605190:CDS |
| AATTTGGTTAGCTGTATTTG+CGG | 0.507682 | 4_2:-50945309 | Msa0605190:CDS |
| GGAGGACTTGCGCAGAGTGA+TGG | 0.509123 | 4_2:-50946476 | Msa0605190:CDS |
| GTGTTTGATGTGGGAGCTCT+GGG | 0.510947 | 4_2:-50945433 | Msa0605190:CDS |
| ATATCATGACTCTGGCTCGC+TGG | 0.511966 | 4_2:-50946317 | Msa0605190:CDS |
| TCCACCGGTTTGTGGCACTT+TGG | 0.517904 | 4_2:+50945348 | None:intergenic |
| TGGGAATGCAATTCGTGTTG+GGG | 0.518482 | 4_2:-50945541 | Msa0605190:CDS |
| TTATTGGATTCTATTAATCT+CGG | 0.520903 | 4_2:-50944372 | Msa0605190:CDS |
| TATAGCACCATATAAATCAA+AGG | 0.523492 | 4_2:-50944337 | Msa0605190:CDS |
| ATATTATTTGGATTGGATCG+AGG | 0.525334 | 4_2:+50947560 | None:intergenic |
| GCTGTCGTAAGAACTTTACT+TGG | 0.526473 | 4_2:-50945666 | Msa0605190:CDS |
| AACAAATGTCAGAAGCTGAA+AGG | 0.528651 | 4_2:-50944672 | Msa0605190:CDS |
| ATAGCACCATATAAATCAAA+GGG | 0.529766 | 4_2:-50944336 | Msa0605190:CDS |
| TTTCTGTCTACAACTTCAGC+TGG | 0.532183 | 4_2:+50943477 | None:intergenic |
| AAGGAAGGAACCTGAGCAGC+GGG | 0.534714 | 4_2:+50947366 | None:intergenic |
| TGTGGGAATGCAATTCGTGT+TGG | 0.535934 | 4_2:-50945543 | Msa0605190:CDS |
| CTGTACAGTTGGTTGTGTGG+TGG | 0.539491 | 4_2:-50945045 | Msa0605190:intron |
| AGCAATAAAGCTGACAATAC+GGG | 0.541090 | 4_2:-50944279 | Msa0605190:intron |
| GGAATACTCACCAAAATGCT+TGG | 0.544949 | 4_2:+50945286 | None:intergenic |
| GAATAGTGAATTGAGAAGAA+AGG | 0.547195 | 4_2:+50947524 | None:intergenic |
| CCCCTGTTCGTGTTTGATGT+GGG | 0.548928 | 4_2:-50945442 | Msa0605190:CDS |
| GACACAGCATTTCTTTGTCA+AGG | 0.556593 | 4_2:-50945754 | Msa0605190:CDS |
| AGTCTGTGTGAGCTTTATAC+CGG | 0.559653 | 4_2:+50944899 | None:intergenic |
| TGTCCGAGCACGCCACATTG+TGG | 0.561018 | 4_2:-50945561 | Msa0605190:CDS |
| AAGAAAGCAAAACAAAGCAA+AGG | 0.562786 | 4_2:-50947683 | None:intergenic |
| GGAATCACTGATAGTTGCAC+AGG | 0.563375 | 4_2:-50946589 | Msa0605190:intron |
| CATACTTCTCTGCCATATCA+GGG | 0.565467 | 4_2:+50945634 | None:intergenic |
| TGTATATATGCTGCAAGCGT+AGG | 0.573507 | 4_2:-50943591 | Msa0605190:CDS |
| TGCTCAGGCTGGTGTTAGTG+TGG | 0.573538 | 4_2:-50946344 | Msa0605190:CDS |
| GCATATTTAAAGGTGTCGAA+AGG | 0.577111 | 4_2:+50944568 | None:intergenic |
| TGAACTCAATGATTATAGCT+GGG | 0.579869 | 4_2:-50944791 | Msa0605190:CDS |
| AAACTGAAAGATATCATACA+AGG | 0.580876 | 4_2:-50944859 | Msa0605190:CDS |
| TTTCTGTACAGTTGGTTGTG+TGG | 0.585716 | 4_2:-50945048 | Msa0605190:intron |
| AAGTAAACGCATCAGATGCA+TGG | 0.588761 | 4_2:-50945718 | Msa0605190:CDS |
| GTGGATGAATATCATGACTC+TGG | 0.592583 | 4_2:-50946325 | Msa0605190:CDS |
| TGTGCTGTGTTGTGTGTGTG+TGG | 0.593815 | 4_2:-50947651 | Msa0605190:five_prime_UTR |
| CTTAATCAGTCAGAAGAGAG+TGG | 0.594834 | 4_2:-50943555 | Msa0605190:CDS |
| CAAACGCATATGAATATGAA+AGG | 0.599466 | 4_2:+50944728 | None:intergenic |
| CGACGACAAAAGTGAAGGGA+AGG | 0.599701 | 4_2:+50947617 | None:intergenic |
| ATTCCGACGACAAAAGTGAA+GGG | 0.601275 | 4_2:+50947613 | None:intergenic |
| ATCAAGAGAAATCAGCTGAG+CGG | 0.602973 | 4_2:-50944960 | Msa0605190:CDS |
| TTCTTTGTCAAGGTAAACGA+GGG | 0.608990 | 4_2:-50945744 | Msa0605190:CDS |
| AATTCCGACGACAAAAGTGA+AGG | 0.611696 | 4_2:+50947612 | None:intergenic |
| GGAGTATTGATAATCTTCAT+CGG | 0.611843 | 4_2:+50947473 | None:intergenic |
| AGTAATGTGTGAAATTTGCA+TGG | 0.612800 | 4_2:-50946284 | Msa0605190:CDS |
| TCCCACATCAAACACGAACA+GGG | 0.614215 | 4_2:+50945441 | None:intergenic |
| GCAGCGGGAGCAATAGAAGA+GGG | 0.626117 | 4_2:+50947381 | None:intergenic |
| TACTTGACCAAGTATGATCA+CGG | 0.628425 | 4_2:+50945013 | None:intergenic |
| AGCAGCGGGAGCAATAGAAG+AGG | 0.631344 | 4_2:+50947380 | None:intergenic |
| ATTTATATGGTGCTATACTG+TGG | 0.634097 | 4_2:+50944343 | None:intergenic |
| AGTATAGCTGGTCACAGCTG+TGG | 0.637100 | 4_2:-50944994 | Msa0605190:CDS |
| TCCAAAGTGCCACAAACCGG+TGG | 0.641185 | 4_2:-50945349 | Msa0605190:CDS |
| GGGAATGCAATTCGTGTTGG+GGG | 0.651226 | 4_2:-50945540 | Msa0605190:CDS |
| CCCACATCAAACACGAACAG+GGG | 0.653511 | 4_2:+50945442 | None:intergenic |
| ATTATTTGGATTGGATCGAG+GGG | 0.658616 | 4_2:+50947562 | None:intergenic |
| GAAGGAAGGAACCTGAGCAG+CGG | 0.659810 | 4_2:+50947365 | None:intergenic |
| TTATTTGGATTGGATCGAGG+GGG | 0.659930 | 4_2:+50947563 | None:intergenic |
| TTTCTTTGTCAAGGTAAACG+AGG | 0.661438 | 4_2:-50945745 | Msa0605190:CDS |
| CGAATTGCATTCCCACAATG+TGG | 0.661456 | 4_2:+50945549 | None:intergenic |
| GGGTGATGATGACTTGTGTG+AGG | 0.663158 | 4_2:-50945520 | Msa0605190:CDS |
| ACACTTGCAGGTGATTACGA+AGG | 0.665460 | 4_2:-50946610 | Msa0605190:intron |
| CCACATCAAACACGAACAGG+GGG | 0.666654 | 4_2:+50945443 | None:intergenic |
| AACTGAAAGATATCATACAA+GGG | 0.667662 | 4_2:-50944858 | Msa0605190:CDS |
| GTATTGATAATCTTCATCGG+TGG | 0.686161 | 4_2:+50947476 | None:intergenic |
| GTCGAAGAAGAAGATTCCGT+CGG | 0.701998 | 4_2:-50947441 | Msa0605190:CDS |
| AAGCGTGCCAGAGAAGAAGG+TGG | 0.717667 | 4_2:-50943519 | Msa0605190:CDS |
| TGTGAGGTAGAATGTTCATG+TGG | 0.730408 | 4_2:-50945504 | Msa0605190:CDS |
| GAAGCAACAAGAATGGACTG+TGG | 0.810129 | 4_2:-50946244 | Msa0605190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAAAAAAT+AGG | + | chr4_2:50945283-50945302 | None:intergenic | 0.0% |
| !! | TCGAATAAAAAAAAAAAAAA+AGG | + | chr4_2:50943830-50943849 | None:intergenic | 10.0% |
| !!! | TCTATGGTTATATATTTTAT+TGG | - | chr4_2:50944234-50944253 | Msa0605190:intron | 15.0% |
| !! | TAAAAAAAAAAAACACTAAC+AGG | + | chr4_2:50944946-50944965 | None:intergenic | 15.0% |
| !!! | TTTTGAAGAAGAAAAAATAA+GGG | + | chr4_2:50944983-50945002 | None:intergenic | 15.0% |
| !!! | ATTTTGAAGAAGAAAAAATA+AGG | + | chr4_2:50944984-50945003 | None:intergenic | 15.0% |
| !! | AAGAAACATAAATTATTTCA+TGG | + | chr4_2:50945937-50945956 | None:intergenic | 15.0% |
| !! | ATGAAATAATTTATGTTTCT+TGG | - | chr4_2:50945936-50945955 | Msa0605190:intron | 15.0% |
| !! | AGATTAGGGTTTATATTATT+TGG | + | chr4_2:50943602-50943621 | None:intergenic | 20.0% |
| !!! | TTGATTAAAATTTGGAACTT+TGG | - | chr4_2:50943934-50943953 | Msa0605190:intron | 20.0% |
| !!! | ATTTTTTTTTGTTGAGTTTC+TGG | - | chr4_2:50943970-50943989 | Msa0605190:intron | 20.0% |
| !!! | TTTTGTGTTTATTTAGTCTA+TGG | - | chr4_2:50944218-50944237 | Msa0605190:intron | 20.0% |
| !!! | TTGAAATGTTTCTGTTATTA+TGG | - | chr4_2:50944370-50944389 | Msa0605190:CDS | 20.0% |
| !!! | TTTGAAGTTTATGTAGAAAA+AGG | - | chr4_2:50944765-50944784 | Msa0605190:CDS | 20.0% |
| !! | TTGAAGTTTATGTAGAAAAA+GGG | - | chr4_2:50944766-50944785 | Msa0605190:CDS | 20.0% |
| !! | TTTCTTCTTCAAAATTTCAT+CGG | - | chr4_2:50944989-50945008 | Msa0605190:CDS | 20.0% |
| !! | TTGTTGTATGTATCATAATA+TGG | - | chr4_2:50946029-50946048 | Msa0605190:intron | 20.0% |
| !! | CATAAGTTTAGCATATTTAA+AGG | + | chr4_2:50946592-50946611 | None:intergenic | 20.0% |
| !! | CTTTAAATATGCTAAACTTA+TGG | - | chr4_2:50946590-50946609 | Msa0605190:CDS | 20.0% |
| !! | TTATTGGATTCTATTAATCT+CGG | - | chr4_2:50946775-50946794 | Msa0605190:intron | 20.0% |
| !! | TTATCAGTAACTAACTTATT+GGG | - | chr4_2:50947010-50947029 | Msa0605190:intron | 20.0% |
| !!! | AAGTAATGGAAAATTAATCA+TGG | + | chr4_2:50947156-50947175 | None:intergenic | 20.0% |
| !! | TTAATAAAACCACTGTTAAT+TGG | - | chr4_2:50947256-50947275 | Msa0605190:intron | 20.0% |
| !! | TAATAAAACCACTGTTAATT+GGG | - | chr4_2:50947257-50947276 | Msa0605190:intron | 20.0% |
| !! | GCTCAAGATATAAATTAATT+TGG | + | chr4_2:50947438-50947457 | None:intergenic | 20.0% |
| ! | AGGGTTTATATTATTTGGAT+TGG | + | chr4_2:50943597-50943616 | None:intergenic | 25.0% |
| ! | AATGAAAATGAAAAGGTTGA+AGG | + | chr4_2:50943803-50943822 | None:intergenic | 25.0% |
| ! | AGGTTTGAATGAAAATGAAA+AGG | + | chr4_2:50943810-50943829 | None:intergenic | 25.0% |
| ! | GTTTAGCTATTAAATTGTGA+CGG | + | chr4_2:50944028-50944047 | None:intergenic | 25.0% |
| ! | ATTCTTGCTCAATTTATTGA+TGG | - | chr4_2:50944172-50944191 | Msa0605190:intron | 25.0% |
| !!! | TGTTGTTTGTTGTTATTGTA+TGG | - | chr4_2:50944326-50944345 | Msa0605190:CDS | 25.0% |
| !!! | TTATTGTATGGTTTTAACGA+AGG | - | chr4_2:50944338-50944357 | Msa0605190:CDS | 25.0% |
| ! | TAATATTAACCACTAGAAGT+TGG | + | chr4_2:50944431-50944450 | None:intergenic | 25.0% |
| ! | TAATGCTTATTTATCATCGT+TGG | - | chr4_2:50944727-50944746 | Msa0605190:CDS | 25.0% |
| ! | AATGCTTATTTATCATCGTT+GGG | - | chr4_2:50944728-50944747 | Msa0605190:CDS | 25.0% |
| ! | GAATTCTTAATGTTACATGA+TGG | - | chr4_2:50945026-50945045 | Msa0605190:CDS | 25.0% |
| ! | AAGATTCATATAACCAATCA+AGG | - | chr4_2:50945230-50945249 | Msa0605190:intron | 25.0% |
| ! | TGGAAAAATTACATCAACTT+TGG | - | chr4_2:50945350-50945369 | Msa0605190:CDS | 25.0% |
| ! | AAGACAATAAGAGAGTTAAA+TGG | - | chr4_2:50945563-50945582 | Msa0605190:CDS | 25.0% |
| ! | ATGAATCAGAAACTGTTAAT+TGG | - | chr4_2:50945752-50945771 | Msa0605190:CDS | 25.0% |
| ! | TGAGAATATATAATGCAAGA+AGG | + | chr4_2:50945885-50945904 | None:intergenic | 25.0% |
| ! | TATGTATCATAATATGGATC+AGG | - | chr4_2:50946035-50946054 | Msa0605190:intron | 25.0% |
| ! | AAAATGGGCAAAATTATTAC+TGG | + | chr4_2:50946082-50946101 | None:intergenic | 25.0% |
| ! | AAACTGAAAGATATCATACA+AGG | - | chr4_2:50946288-50946307 | Msa0605190:CDS | 25.0% |
| ! | AACTGAAAGATATCATACAA+GGG | - | chr4_2:50946289-50946308 | Msa0605190:CDS | 25.0% |
| ! | ATTACAGAAGAAAAACATTC+TGG | - | chr4_2:50946321-50946340 | Msa0605190:CDS | 25.0% |
| ! | AATGAAACAGAACTTATTTG+AGG | - | chr4_2:50946500-50946519 | Msa0605190:intron | 25.0% |
| !!! | TGAAAAACTCTCTAAGATTT+TGG | - | chr4_2:50946551-50946570 | Msa0605190:intron | 25.0% |
| ! | TGAATTCTTATATTGAATGC+AGG | - | chr4_2:50946731-50946750 | Msa0605190:intron | 25.0% |
| ! | TATAGCACCATATAAATCAA+AGG | - | chr4_2:50946810-50946829 | Msa0605190:intron | 25.0% |
| ! | ATAGCACCATATAAATCAAA+GGG | - | chr4_2:50946811-50946830 | Msa0605190:intron | 25.0% |
| ! | TAAATGTCTATTGTTGGATT+TGG | - | chr4_2:50946891-50946910 | Msa0605190:intron | 25.0% |
| ! | ATAAGTTAGTTACTGATAAC+AGG | + | chr4_2:50947009-50947028 | None:intergenic | 25.0% |
| ! | GTTATCAGTAACTAACTTAT+TGG | - | chr4_2:50947009-50947028 | Msa0605190:intron | 25.0% |
| ! | TATATGCACAATACAAGTAA+TGG | + | chr4_2:50947170-50947189 | None:intergenic | 25.0% |
| !!! | CAGTGGTTTTATTAAAATCA+GGG | + | chr4_2:50947251-50947270 | None:intergenic | 25.0% |
| !!! | ACAGTGGTTTTATTAAAATC+AGG | + | chr4_2:50947252-50947271 | None:intergenic | 25.0% |
| ! | TTTCATGATTGAATTGTGTA+TGG | - | chr4_2:50947291-50947310 | Msa0605190:intron | 25.0% |
| ! | TATTATTTGGATTGGATCGA+GGG | + | chr4_2:50943589-50943608 | None:intergenic | 30.0% |
| ! | ATATTATTTGGATTGGATCG+AGG | + | chr4_2:50943590-50943609 | None:intergenic | 30.0% |
| TTGAGAAGAAAGGTAGATTA+GGG | + | chr4_2:50943616-50943635 | None:intergenic | 30.0% | |
| ATTGAGAAGAAAGGTAGATT+AGG | + | chr4_2:50943617-50943636 | None:intergenic | 30.0% | |
| GAATAGTGAATTGAGAAGAA+AGG | + | chr4_2:50943626-50943645 | None:intergenic | 30.0% | |
| CAATTCACTATTCAATTCGA+TGG | - | chr4_2:50943633-50943652 | Msa0605190:intron | 30.0% | |
| !! | GGAGTATTGATAATCTTCAT+CGG | + | chr4_2:50943677-50943696 | None:intergenic | 30.0% |
| AAAATGAAAAGGTTGAAGGA+AGG | + | chr4_2:50943799-50943818 | None:intergenic | 30.0% | |
| !! | TTGGAACTTTGGAATTGATT+TGG | - | chr4_2:50943945-50943964 | Msa0605190:intron | 30.0% |
| !! | TTGTTTTGTATCGTCGTTTT+TGG | - | chr4_2:50943994-50944013 | Msa0605190:intron | 30.0% |
| !!! | TGTTTTGTATCGTCGTTTTT+GGG | - | chr4_2:50943995-50944014 | Msa0605190:intron | 30.0% |
| CCGTCAATTTCATATACTTA+GGG | + | chr4_2:50944074-50944093 | None:intergenic | 30.0% | |
| CCCTAAGTATATGAAATTGA+CGG | - | chr4_2:50944071-50944090 | Msa0605190:intron | 30.0% | |
| CCTAAGTATATGAAATTGAC+GGG | - | chr4_2:50944072-50944091 | Msa0605190:intron | 30.0% | |
| CTAAGTATATGAAATTGACG+GGG | - | chr4_2:50944073-50944092 | Msa0605190:intron | 30.0% | |
| TGGTTTAGAGACTAAATTGA+TGG | - | chr4_2:50944146-50944165 | Msa0605190:intron | 30.0% | |
| !!! | TTATGGTTGTAACTTTTTCG+TGG | - | chr4_2:50944387-50944406 | Msa0605190:CDS | 30.0% |
| ! | TTTTCGTGGTTTATAGTCTA+TGG | - | chr4_2:50944401-50944420 | Msa0605190:intron | 30.0% |
| AAAAATGTCAGTGCATAGAA+AGG | + | chr4_2:50944501-50944520 | None:intergenic | 30.0% | |
| CTTCTGATATGAATACACAT+AGG | + | chr4_2:50944652-50944671 | None:intergenic | 30.0% | |
| CTATGTGTATTCATATCAGA+AGG | - | chr4_2:50944650-50944669 | Msa0605190:CDS | 30.0% | |
| AGTTTATGTAGAAAAAGGGA+AGG | - | chr4_2:50944770-50944789 | Msa0605190:CDS | 30.0% | |
| AGTAATGTGTGAAATTTGCA+TGG | - | chr4_2:50944863-50944882 | Msa0605190:CDS | 30.0% | |
| ! | TTAGTGGGTAACATTAAGAA+TGG | - | chr4_2:50945061-50945080 | Msa0605190:intron | 30.0% |
| ! | TTCATGAGGGTGTAAAAAAA+AGG | + | chr4_2:50945326-50945345 | None:intergenic | 30.0% |
| ! | ATTTTTCCAGTCTTTCATGA+GGG | + | chr4_2:50945339-50945358 | None:intergenic | 30.0% |
| ! | AATTTTTCCAGTCTTTCATG+AGG | + | chr4_2:50945340-50945359 | None:intergenic | 30.0% |
| TCTCTTATTGTCTTCAATGT+AGG | + | chr4_2:50945557-50945576 | None:intergenic | 30.0% | |
| GAAAAATGGTGGTTGTAATT+TGG | - | chr4_2:50945822-50945841 | Msa0605190:intron | 30.0% | |
| ! | AATTTGGTTAGCTGTATTTG+CGG | - | chr4_2:50945838-50945857 | Msa0605190:intron | 30.0% |
| ! | TCATGGAAAAGTATAATGAC+CGG | + | chr4_2:50945920-50945939 | None:intergenic | 30.0% |
| CAGTTTACTTTCAAGCTTAA+AGG | + | chr4_2:50946274-50946293 | None:intergenic | 30.0% | |
| TGAACTCAATGATTATAGCT+GGG | - | chr4_2:50946356-50946375 | Msa0605190:CDS | 30.0% | |
| GATTATAGCTGGGTAAATAA+TGG | - | chr4_2:50946366-50946385 | Msa0605190:CDS | 30.0% | |
| CAAACGCATATGAATATGAA+AGG | + | chr4_2:50946422-50946441 | None:intergenic | 30.0% | |
| !!! | AAAACTCTCTAAGATTTTGG+AGG | - | chr4_2:50946554-50946573 | Msa0605190:intron | 30.0% |
| ATGCTAAACTTATGGAGATA+AGG | - | chr4_2:50946598-50946617 | Msa0605190:CDS | 30.0% | |
| !! | ATTTATATGGTGCTATACTG+TGG | + | chr4_2:50946807-50946826 | None:intergenic | 30.0% |
| ! | TCTATGCCCTTTGATTTATA+TGG | + | chr4_2:50946820-50946839 | None:intergenic | 30.0% |
| ACTTGTATTGTGCATATATG+TGG | - | chr4_2:50947172-50947191 | Msa0605190:intron | 30.0% | |
| CTTGTATTGTGCATATATGT+GGG | - | chr4_2:50947173-50947192 | Msa0605190:intron | 30.0% | |
| TTAAAATCAGGGTGAAATCA+AGG | + | chr4_2:50947240-50947259 | None:intergenic | 30.0% | |
| TGAATGAATATATTGCATCG+TGG | - | chr4_2:50947317-50947336 | Msa0605190:intron | 30.0% | |
| GTTGTTGTAACATGAAAAAG+TGG | - | chr4_2:50947410-50947429 | Msa0605190:CDS | 30.0% | |
| !! | TTTTCTTCAGTTTGACTTTG+TGG | - | chr4_2:50947499-50947518 | Msa0605190:exon | 30.0% |
| AGAAATGTTACTGAGTGAAA+AGG | - | chr4_2:50947528-50947547 | Msa0605190:five_prime_UTR | 30.0% | |
| ! | ATTATTTGGATTGGATCGAG+GGG | + | chr4_2:50943588-50943607 | None:intergenic | 35.0% |
| ! | GTATTGATAATCTTCATCGG+TGG | + | chr4_2:50943674-50943693 | None:intergenic | 35.0% |
| CCCGTCAATTTCATATACTT+AGG | + | chr4_2:50944075-50944094 | None:intergenic | 35.0% | |
| CTAAATTGAAGTGAGAGTGA+TGG | - | chr4_2:50944126-50944145 | Msa0605190:intron | 35.0% | |
| TTATGTGAAGCTGAATCGTT+TGG | - | chr4_2:50944473-50944492 | Msa0605190:intron | 35.0% | |
| TATGTGAAGCTGAATCGTTT+GGG | - | chr4_2:50944474-50944493 | Msa0605190:intron | 35.0% | |
| TGTGTATTCATATCAGAAGG+AGG | - | chr4_2:50944653-50944672 | Msa0605190:CDS | 35.0% | |
| TATTTATCATCGTTGGGATG+TGG | - | chr4_2:50944734-50944753 | Msa0605190:CDS | 35.0% | |
| ! | ATTCTTGTTGCTTCATCACT+AGG | + | chr4_2:50944897-50944916 | None:intergenic | 35.0% |
| TAGTGATGAAGCAACAAGAA+TGG | - | chr4_2:50944896-50944915 | Msa0605190:CDS | 35.0% | |
| TAACGCTTGAAAACCTTGAT+TGG | + | chr4_2:50945246-50945265 | None:intergenic | 35.0% | |
| AAAAAATAGGCCATGTCATC+CGG | + | chr4_2:50945270-50945289 | None:intergenic | 35.0% | |
| TGTGTCCAACCTGTAAAAAT+AGG | + | chr4_2:50945379-50945398 | None:intergenic | 35.0% | |
| TTTCTTTGTCAAGGTAAACG+AGG | - | chr4_2:50945402-50945421 | Msa0605190:CDS | 35.0% | |
| TTCTTTGTCAAGGTAAACGA+GGG | - | chr4_2:50945403-50945422 | Msa0605190:CDS | 35.0% | |
| ! | CATGGAAAAGTATAATGACC+GGG | + | chr4_2:50945919-50945938 | None:intergenic | 35.0% |
| CAACCAACTGTACAGAAAAT+GGG | + | chr4_2:50946097-50946116 | None:intergenic | 35.0% | |
| ACAACCAACTGTACAGAAAA+TGG | + | chr4_2:50946098-50946117 | None:intergenic | 35.0% | |
| TACTTGACCAAGTATGATCA+CGG | + | chr4_2:50946137-50946156 | None:intergenic | 35.0% | |
| GGTACATGCATTATCATAAC+CGG | - | chr4_2:50946229-50946248 | Msa0605190:CDS | 35.0% | |
| CTGAACTCAATGATTATAGC+TGG | - | chr4_2:50946355-50946374 | Msa0605190:CDS | 35.0% | |
| ! | GCGTTTGCGTTTTATATGTT+TGG | - | chr4_2:50946435-50946454 | Msa0605190:CDS | 35.0% |
| AACAAATGTCAGAAGCTGAA+AGG | - | chr4_2:50946475-50946494 | Msa0605190:CDS | 35.0% | |
| ACAAATGTCAGAAGCTGAAA+GGG | - | chr4_2:50946476-50946495 | Msa0605190:CDS | 35.0% | |
| !! | GCATATTTAAAGGTGTCGAA+AGG | + | chr4_2:50946582-50946601 | None:intergenic | 35.0% |
| ! | TAAGTGTTGTGCTTTAGATG+AGG | - | chr4_2:50946672-50946691 | Msa0605190:intron | 35.0% |
| ! | GTGCATCGACAATGATTTAT+TGG | - | chr4_2:50946759-50946778 | Msa0605190:intron | 35.0% |
| GAGCAATAAAGCTGACAATA+CGG | - | chr4_2:50946867-50946886 | Msa0605190:intron | 35.0% | |
| AGCAATAAAGCTGACAATAC+GGG | - | chr4_2:50946868-50946887 | Msa0605190:intron | 35.0% | |
| TACGGGTAAATGTCTATTGT+TGG | - | chr4_2:50946885-50946904 | Msa0605190:intron | 35.0% | |
| AAAACCACTGTTAATTGGGA+TGG | - | chr4_2:50947261-50947280 | Msa0605190:intron | 35.0% | |
| AAATCCATCCCAATTAACAG+TGG | + | chr4_2:50947268-50947287 | None:intergenic | 35.0% | |
| ATTCCGACGACAAAAGTGAA+GGG | + | chr4_2:50943537-50943556 | None:intergenic | 40.0% | |
| AATTCCGACGACAAAAGTGA+AGG | + | chr4_2:50943538-50943557 | None:intergenic | 40.0% | |
| ! | TTATTTGGATTGGATCGAGG+GGG | + | chr4_2:50943587-50943606 | None:intergenic | 40.0% |
| TTCTTCTTCGACGTCTTGAT+CGG | + | chr4_2:50943698-50943717 | None:intergenic | 40.0% | |
| ! | GTTTTCGTAGAATTCACCGA+CGG | + | chr4_2:50943725-50943744 | None:intergenic | 40.0% |
| ACTAAGTGAAGTCGTCTACA+TGG | + | chr4_2:50944291-50944310 | None:intergenic | 40.0% | |
| CGACTTCACTTAGTGTTGTA+AGG | - | chr4_2:50944297-50944316 | Msa0605190:CDS | 40.0% | |
| TCACTTAGTGTTGTAAGGCT+TGG | - | chr4_2:50944302-50944321 | Msa0605190:CDS | 40.0% | |
| TATGGTGATCCAACTTCTAG+TGG | - | chr4_2:50944419-50944438 | Msa0605190:intron | 40.0% | |
| !!! | TGAACTGTTTTGACACTTGC+AGG | - | chr4_2:50944525-50944544 | Msa0605190:CDS | 40.0% |
| !! | GAAGGCATTTATGTTTGCTC+AGG | - | chr4_2:50944788-50944807 | Msa0605190:CDS | 40.0% |
| GTGGATGAATATCATGACTC+TGG | - | chr4_2:50944822-50944841 | Msa0605190:CDS | 40.0% | |
| ATGGCGTATTGTCATGTTAG+TGG | - | chr4_2:50945045-50945064 | Msa0605190:intron | 40.0% | |
| TGGCGTATTGTCATGTTAGT+GGG | - | chr4_2:50945046-50945065 | Msa0605190:intron | 40.0% | |
| AATGGACCGCACATAAATAG+TGG | - | chr4_2:50945139-50945158 | Msa0605190:intron | 40.0% | |
| TTTACACCCTCATGAAAGAC+TGG | - | chr4_2:50945330-50945349 | Msa0605190:CDS | 40.0% | |
| GTCCAACCTGTAAAAATAGG+CGG | + | chr4_2:50945376-50945395 | None:intergenic | 40.0% | |
| GACACAGCATTTCTTTGTCA+AGG | - | chr4_2:50945393-50945412 | Msa0605190:CDS | 40.0% | |
| AAGTAAACGCATCAGATGCA+TGG | - | chr4_2:50945429-50945448 | Msa0605190:CDS | 40.0% | |
| GCTGTCGTAAGAACTTTACT+TGG | - | chr4_2:50945481-50945500 | Msa0605190:CDS | 40.0% | |
| CATACTTCTCTGCCATATCA+GGG | + | chr4_2:50945516-50945535 | None:intergenic | 40.0% | |
| TCATACTTCTCTGCCATATC+AGG | + | chr4_2:50945517-50945536 | None:intergenic | 40.0% | |
| TGTGAGGTAGAATGTTCATG+TGG | - | chr4_2:50945643-50945662 | Msa0605190:CDS | 40.0% | |
| GGAATACTCACCAAAATGCT+TGG | + | chr4_2:50945864-50945883 | None:intergenic | 40.0% | |
| ! | ATTCTCATCCAACTTGTTCC+CGG | - | chr4_2:50945898-50945917 | Msa0605190:intron | 40.0% |
| TATAATGACCGGGAACAAGT+TGG | + | chr4_2:50945909-50945928 | None:intergenic | 40.0% | |
| TTTGATCCATGTTGCCGTAA+AGG | - | chr4_2:50945992-50946011 | Msa0605190:intron | 40.0% | |
| CAACAACAACCAAGCCTTTA+CGG | + | chr4_2:50946009-50946028 | None:intergenic | 40.0% | |
| ! | TTGCCCATTTTCTGTACAGT+TGG | - | chr4_2:50946091-50946110 | Msa0605190:intron | 40.0% |
| TTTCTGTACAGTTGGTTGTG+TGG | - | chr4_2:50946099-50946118 | Msa0605190:intron | 40.0% | |
| CATACTTGGTCAAGTATAGC+TGG | - | chr4_2:50946141-50946160 | Msa0605190:intron | 40.0% | |
| ATCAAGAGAAATCAGCTGAG+CGG | - | chr4_2:50946187-50946206 | Msa0605190:intron | 40.0% | |
| ! | AGTCTGTGTGAGCTTTATAC+CGG | + | chr4_2:50946251-50946270 | None:intergenic | 40.0% |
| ! | GCTTTATTGCTCCAACAAAC+TGG | + | chr4_2:50946859-50946878 | None:intergenic | 40.0% |
| GAAGCAACGGAATAATACGA+GGG | + | chr4_2:50946943-50946962 | None:intergenic | 40.0% | |
| AGAAGCAACGGAATAATACG+AGG | + | chr4_2:50946944-50946963 | None:intergenic | 40.0% | |
| CAGCATAAAGAGAGAAGCAA+CGG | + | chr4_2:50946956-50946975 | None:intergenic | 40.0% | |
| GTCTCAACATGTACACTTTG+TGG | - | chr4_2:50947072-50947091 | Msa0605190:intron | 40.0% | |
| TGTACACTTTGTGGTCATGT+TGG | - | chr4_2:50947081-50947100 | Msa0605190:intron | 40.0% | |
| TGTGGGAGATCATAGTTGTA+TGG | - | chr4_2:50947190-50947209 | Msa0605190:intron | 40.0% | |
| GTGGGAGATCATAGTTGTAT+GGG | - | chr4_2:50947191-50947210 | Msa0605190:intron | 40.0% | |
| TGGGAGATCATAGTTGTATG+GGG | - | chr4_2:50947192-50947211 | Msa0605190:intron | 40.0% | |
| GATCATAGTTGTATGGGGAT+CGG | - | chr4_2:50947197-50947216 | Msa0605190:intron | 40.0% | |
| TGTATATATGCTGCAAGCGT+AGG | - | chr4_2:50947556-50947575 | Msa0605190:five_prime_UTR | 40.0% | |
| CTTAATCAGTCAGAAGAGAG+TGG | - | chr4_2:50947592-50947611 | Msa0605190:five_prime_UTR | 40.0% | |
| AAAAAAGCCACCTTCTTCTC+TGG | + | chr4_2:50947638-50947657 | None:intergenic | 40.0% | |
| TTTCTGTCTACAACTTCAGC+TGG | + | chr4_2:50947673-50947692 | None:intergenic | 40.0% | |
| TGTGTTGTGTGTGTGTGGTA+AGG | - | chr4_2:50943501-50943520 | Msa0605190:CDS | 45.0% | |
| !! | CTTCCCTTCACTTTTGTCGT+CGG | - | chr4_2:50943531-50943550 | Msa0605190:CDS | 45.0% |
| GTCGAAGAAGAAGATTCCGT+CGG | - | chr4_2:50943706-50943725 | Msa0605190:intron | 45.0% | |
| ACACTTGCAGGTGATTACGA+AGG | - | chr4_2:50944537-50944556 | Msa0605190:CDS | 45.0% | |
| GGAATCACTGATAGTTGCAC+AGG | - | chr4_2:50944558-50944577 | Msa0605190:CDS | 45.0% | |
| GCATTTATGTTTGCTCAGGC+TGG | - | chr4_2:50944792-50944811 | Msa0605190:CDS | 45.0% | |
| !! | GAAGCAACAAGAATGGACTG+TGG | - | chr4_2:50944903-50944922 | Msa0605190:CDS | 45.0% |
| GTGCGTGTCCACAAAATCAA+TGG | - | chr4_2:50945121-50945140 | Msa0605190:intron | 45.0% | |
| !!! | TGTGCGGTCCATTGATTTTG+TGG | + | chr4_2:50945132-50945151 | None:intergenic | 45.0% |
| GACCGCACATAAATAGTGGT+GGG | - | chr4_2:50945143-50945162 | Msa0605190:intron | 45.0% | |
| GACCCACCACTATTTATGTG+CGG | + | chr4_2:50945148-50945167 | None:intergenic | 45.0% | |
| !! | CAAGGTTTTCAAGCGTTAGC+CGG | - | chr4_2:50945248-50945267 | Msa0605190:intron | 45.0% |
| !!! | CTTTGGCCGCCTATTTTTAC+AGG | - | chr4_2:50945367-50945386 | Msa0605190:CDS | 45.0% |
| !! | TGGTAGAAAGCACCCTGATA+TGG | - | chr4_2:50945501-50945520 | Msa0605190:CDS | 45.0% |
| CGAATTGCATTCCCACAATG+TGG | + | chr4_2:50945601-50945620 | None:intergenic | 45.0% | |
| TGTGGGAATGCAATTCGTGT+TGG | - | chr4_2:50945604-50945623 | Msa0605190:CDS | 45.0% | |
| GTGGGAATGCAATTCGTGTT+GGG | - | chr4_2:50945605-50945624 | Msa0605190:CDS | 45.0% | |
| TGGGAATGCAATTCGTGTTG+GGG | - | chr4_2:50945606-50945625 | Msa0605190:CDS | 45.0% | |
| TCCCACATCAAACACGAACA+GGG | + | chr4_2:50945709-50945728 | None:intergenic | 45.0% | |
| !!! | CATTTTTCTCCACCGGTTTG+TGG | + | chr4_2:50945810-50945829 | None:intergenic | 45.0% |
| CACAAACCGGTGGAGAAAAA+TGG | - | chr4_2:50945808-50945827 | Msa0605190:intron | 45.0% | |
| AAACCGGTGGAGAAAAATGG+TGG | - | chr4_2:50945811-50945830 | Msa0605190:intron | 45.0% | |
| !! | CAACCACCATTTTTCTCCAC+CGG | + | chr4_2:50945817-50945836 | None:intergenic | 45.0% |
| ! | GTATTTGCGGCCAAGCATTT+TGG | - | chr4_2:50945851-50945870 | Msa0605190:intron | 45.0% |
| TCAAGAGAAATCAGCTGAGC+GGG | - | chr4_2:50946188-50946207 | Msa0605190:intron | 45.0% | |
| GGGCAAAAAGGGATCTCTAT+AGG | - | chr4_2:50946208-50946227 | Msa0605190:intron | 45.0% | |
| CTTCAGAGCTTCCAGTTTGT+TGG | - | chr4_2:50946845-50946864 | Msa0605190:intron | 45.0% | |
| GGAATAATACGAGGGAGTTG+CGG | + | chr4_2:50946935-50946954 | None:intergenic | 45.0% | |
| !!! | GTATGGGGATCGGTTAGTTT+TGG | - | chr4_2:50947207-50947226 | Msa0605190:intron | 45.0% |
| !!! | TTTATTTATTGATTAAAATT+TGG | - | chr4_2:50943926-50943945 | Msa0605190:intron | 5.0% |
| !!! | TATTTATTTATTTTTTTGAT+CGG | - | chr4_2:50945290-50945309 | Msa0605190:intron | 5.0% |
| !!! | TATAGATTAATTTAATTTTA+TGG | - | chr4_2:50945964-50945983 | Msa0605190:intron | 5.0% |
| TGTGCTGTGTTGTGTGTGTG+TGG | - | chr4_2:50943496-50943515 | Msa0605190:CDS | 50.0% | |
| CGACGACAAAAGTGAAGGGA+AGG | + | chr4_2:50943533-50943552 | None:intergenic | 50.0% | |
| ! | ATATCATGACTCTGGCTCGC+TGG | - | chr4_2:50944830-50944849 | Msa0605190:CDS | 50.0% |
| GGACCGCACATAAATAGTGG+TGG | - | chr4_2:50945142-50945161 | Msa0605190:intron | 50.0% | |
| !!! | GGCCGCCTATTTTTACAGGT+TGG | - | chr4_2:50945371-50945390 | Msa0605190:CDS | 50.0% |
| GGGAATGCAATTCGTGTTGG+GGG | - | chr4_2:50945607-50945626 | Msa0605190:CDS | 50.0% | |
| ! | GGGTGATGATGACTTGTGTG+AGG | - | chr4_2:50945627-50945646 | Msa0605190:CDS | 50.0% |
| CCACATCAAACACGAACAGG+GGG | + | chr4_2:50945707-50945726 | None:intergenic | 50.0% | |
| CCCACATCAAACACGAACAG+GGG | + | chr4_2:50945708-50945727 | None:intergenic | 50.0% | |
| CCCCTGTTCGTGTTTGATGT+GGG | - | chr4_2:50945705-50945724 | Msa0605190:CDS | 50.0% | |
| CTCCCACATCAAACACGAAC+AGG | + | chr4_2:50945710-50945729 | None:intergenic | 50.0% | |
| GTGTTTGATGTGGGAGCTCT+GGG | - | chr4_2:50945714-50945733 | Msa0605190:CDS | 50.0% | |
| ! | CTGTCCAAAGTGCCACAAAC+CGG | - | chr4_2:50945795-50945814 | Msa0605190:intron | 50.0% |
| TCCATGTTGCCGTAAAGGCT+TGG | - | chr4_2:50945997-50946016 | Msa0605190:intron | 50.0% | |
| ACCAAGCCTTTACGGCAACA+TGG | + | chr4_2:50946001-50946020 | None:intergenic | 50.0% | |
| CTGTACAGTTGGTTGTGTGG+TGG | - | chr4_2:50946102-50946121 | Msa0605190:intron | 50.0% | |
| CTACTGGCCGTGATCATACT+TGG | - | chr4_2:50946127-50946146 | Msa0605190:intron | 50.0% | |
| AGTATAGCTGGTCACAGCTG+TGG | - | chr4_2:50946153-50946172 | Msa0605190:intron | 50.0% | |
| AATCAGCTGAGCGGGCAAAA+AGG | - | chr4_2:50946196-50946215 | Msa0605190:intron | 50.0% | |
| ATCAGCTGAGCGGGCAAAAA+GGG | - | chr4_2:50946197-50946216 | Msa0605190:intron | 50.0% | |
| GGATCAACAGCAGCAGTTAG+AGG | - | chr4_2:50946521-50946540 | Msa0605190:intron | 50.0% | |
| ! | GAGGGGGTGTGATCGGTAAA+AGG | + | chr4_2:50943571-50943590 | None:intergenic | 55.0% |
| ! | TTGGATCGAGGGGGTGTGAT+CGG | + | chr4_2:50943578-50943597 | None:intergenic | 55.0% |
| GCAGCGGGAGCAATAGAAGA+GGG | + | chr4_2:50943769-50943788 | None:intergenic | 55.0% | |
| AGCAGCGGGAGCAATAGAAG+AGG | + | chr4_2:50943770-50943789 | None:intergenic | 55.0% | |
| TTCTATTGCTCCCGCTGCTC+AGG | - | chr4_2:50943771-50943790 | Msa0605190:intron | 55.0% | |
| AAGGAAGGAACCTGAGCAGC+GGG | + | chr4_2:50943784-50943803 | None:intergenic | 55.0% | |
| GAAGGAAGGAACCTGAGCAG+CGG | + | chr4_2:50943785-50943804 | None:intergenic | 55.0% | |
| ! | TGCTCAGGCTGGTGTTAGTG+TGG | - | chr4_2:50944803-50944822 | Msa0605190:CDS | 55.0% |
| CAAGCGTTAGCCGGATGACA+TGG | - | chr4_2:50945257-50945276 | Msa0605190:intron | 55.0% | |
| TTCCCACAATGTGGCGTGCT+CGG | + | chr4_2:50945592-50945611 | None:intergenic | 55.0% | |
| CCCCCTGTTCGTGTTTGATG+TGG | - | chr4_2:50945704-50945723 | Msa0605190:CDS | 55.0% | |
| CGTGTTTGATGTGGGAGCTC+TGG | - | chr4_2:50945713-50945732 | Msa0605190:CDS | 55.0% | |
| CGGTTTGTGGCACTTTGGAC+AGG | + | chr4_2:50945797-50945816 | None:intergenic | 55.0% | |
| ! | TCCAAAGTGCCACAAACCGG+TGG | - | chr4_2:50945798-50945817 | Msa0605190:intron | 55.0% |
| !! | TCCACCGGTTTGTGGCACTT+TGG | + | chr4_2:50945802-50945821 | None:intergenic | 55.0% |
| ! | TGGTTGTGTGGTGGAGCTAC+TGG | - | chr4_2:50946111-50946130 | Msa0605190:intron | 55.0% |
| CGTAAGCGTGCCAGAGAAGA+AGG | - | chr4_2:50947625-50947644 | Msa0605190:five_prime_UTR | 55.0% | |
| AAGCGTGCCAGAGAAGAAGG+TGG | - | chr4_2:50947628-50947647 | Msa0605190:five_prime_UTR | 55.0% | |
| GGAGGACTTGCGCAGAGTGA+TGG | - | chr4_2:50944671-50944690 | Msa0605190:CDS | 60.0% | |
| TGTCCGAGCACGCCACATTG+TGG | - | chr4_2:50945586-50945605 | Msa0605190:CDS | 60.0% | |
| GTCCGAGCACGCCACATTGT+GGG | - | chr4_2:50945587-50945606 | Msa0605190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50943473 | 50947696 | 50943473 | ID=Msa0605190;Name=Msa0605190 |
| chr4_2 | mRNA | 50943473 | 50947696 | 50943473 | ID=Msa0605190-mRNA-1;Parent=Msa0605190;Name=Msa0605190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=179|0.83|0.85|1|1|1|7|0|599 |
| chr4_2 | exon | 50943473 | 50943639 | 50943473 | ID=Msa0605190-mRNA-1:exon:12137;Parent=Msa0605190-mRNA-1 |
| chr4_2 | exon | 50944280 | 50944416 | 50944280 | ID=Msa0605190-mRNA-1:exon:12136;Parent=Msa0605190-mRNA-1 |
| chr4_2 | exon | 50944499 | 50945059 | 50944499 | ID=Msa0605190-mRNA-1:exon:12135;Parent=Msa0605190-mRNA-1 |
| chr4_2 | exon | 50945297 | 50945780 | 50945297 | ID=Msa0605190-mRNA-1:exon:12134;Parent=Msa0605190-mRNA-1 |
| chr4_2 | exon | 50946224 | 50946500 | 50946224 | ID=Msa0605190-mRNA-1:exon:12133;Parent=Msa0605190-mRNA-1 |
| chr4_2 | exon | 50946590 | 50946622 | 50946590 | ID=Msa0605190-mRNA-1:exon:12132;Parent=Msa0605190-mRNA-1 |
| chr4_2 | exon | 50947377 | 50947696 | 50947377 | ID=Msa0605190-mRNA-1:exon:12131;Parent=Msa0605190-mRNA-1 |
| chr4_2 | five_prime_UTR | 50947518 | 50947696 | 50947518 | ID=Msa0605190-mRNA-1:five_prime_utr;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50947377 | 50947517 | 50947377 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50946590 | 50946622 | 50946590 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50946224 | 50946500 | 50946224 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50945297 | 50945780 | 50945297 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50944499 | 50945059 | 50944499 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50944280 | 50944416 | 50944280 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| chr4_2 | CDS | 50943473 | 50943639 | 50943473 | ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
