AlfalfaGEDB | Msa0605190

M. sativa cultivar zhongmu-4 / Msa0605190

KEGG: K11968
GO: GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
PFAM: PF01485.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605190	KEH30386.1	98.998	599	6	0	1	599	1	599	0.0	1237

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605190	sp\|Q949V6\|ARI1_ARATH	61.626	615	199	11	3	599	2	597	0.0	770

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605190	A0A072ULZ9	98.998	599	6	0	1	599	1	599	0.0	1237

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037120	Msa0605190	0.820297	7.389582e-53	-8.615850e-47
Msa0051210	Msa0605190	0.806440	8.216414e-50	-8.615850e-47
Msa0051450	Msa0605190	0.800039	1.737631e-48	-8.615850e-47
Msa0064920	Msa0605190	0.809017	2.328945e-50	-8.615850e-47
Msa0084340	Msa0605190	0.826132	3.208228e-54	-8.615850e-47
Msa0131290	Msa0605190	0.821526	3.852695e-53	-8.615850e-47
Msa0149890	Msa0605190	0.817219	3.694300e-52	-8.615850e-47
Msa0177170	Msa0605190	0.802919	4.464152e-49	-8.615850e-47
Msa0183980	Msa0605190	0.811406	7.112429e-51	-8.615850e-47
Msa0189110	Msa0605190	0.804440	2.157736e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605190	MtrunA17_Chr4g0034371	99.081	544	5	0	1	544	1	544	0.0	1129
Msa0605190	MtrunA17_Chr4g0033361	30.143	491	303	12	48	520	61	529	1.77e-61	214
Msa0605190	MtrunA17_Chr2g0329221	28.717	491	310	12	48	520	71	539	2.48e-60	211
Msa0605190	MtrunA17_Chr3g0110331	28.776	490	306	12	49	520	57	521	5.00e-58	204
Msa0605190	MtrunA17_Chr3g0110341	29.142	501	309	16	49	533	84	554	1.55e-54	195
Msa0605190	MtrunA17_Chr4g0038181	27.824	478	273	16	48	495	7	442	6.54e-44	162
Msa0605190	MtrunA17_Chr5g0447801	29.452	292	175	7	245	520	2	278	5.64e-32	125
Msa0605190	MtrunA17_Chr4g0034361	98.148	54	1	0	546	599	1	54	2.40e-29	110
Msa0605190	MtrunA17_Chr4g0038201	23.269	361	186	11	19	356	7	299	6.03e-23	100
Msa0605190	MtrunA17_Chr1g0164621	29.592	196	124	8	126	315	1245	1432	7.34e-14	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605190	AT4G34370.1	61.626	615	199	11	3	599	2	597	0.0	770
Msa0605190	AT2G16090.1	61.639	610	204	10	1	598	1	592	0.0	762
Msa0605190	AT2G16090.4	61.688	616	188	11	1	598	1	586	0.0	757
Msa0605190	AT2G16090.3	66.171	538	164	8	1	533	1	525	0.0	735
Msa0605190	AT2G16090.2	63.603	544	175	7	66	598	1	532	0.0	713
Msa0605190	AT2G16090.5	69.068	472	135	5	66	533	1	465	0.0	685
Msa0605190	AT3G27710.1	59.921	509	190	8	29	533	26	524	0.0	632
Msa0605190	AT4G34370.2	65.393	445	123	9	171	599	1	430	0.0	589
Msa0605190	AT3G27720.1	63.450	342	119	4	194	533	147	484	2.43e-160	468
Msa0605190	AT2G31510.1	29.468	526	328	13	2	509	18	518	2.04e-65	224

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Find 119 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAAAGATATCATACA+AGG	0.580876	4_2:-50944859	Msa0605190:CDS
AACAAATGTCAGAAGCTGAA+AGG	0.528651	4_2:-50944672	Msa0605190:CDS
AACTGAAAGATATCATACAA+GGG	0.667662	4_2:-50944858	Msa0605190:CDS
AAGAAAGCAAAACAAAGCAA+AGG	0.562786	4_2:-50947683	None:intergenic
AAGACAATAAGAGAGTTAAA+TGG	0.413854	4_2:-50945584	Msa0605190:CDS
AAGCGTGCCAGAGAAGAAGG+TGG	0.717667	4_2:-50943519	Msa0605190:CDS
AAGGAAGGAACCTGAGCAGC+GGG	0.534714	4_2:+50947366	None:intergenic
AAGTAAACGCATCAGATGCA+TGG	0.588761	4_2:-50945718	Msa0605190:CDS
AATCAGCTGAGCGGGCAAAA+AGG	0.360614	4_2:-50944951	Msa0605190:CDS
AATGAAACAGAACTTATTTG+AGG	0.494812	4_2:-50944647	Msa0605190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAGAAGAAAGGTAGATTA+GGG	+	chr4_2:50943616-50943635	None:intergenic	30.0%
ATTGAGAAGAAAGGTAGATT+AGG	+	chr4_2:50943617-50943636	None:intergenic	30.0%
GAATAGTGAATTGAGAAGAA+AGG	+	chr4_2:50943626-50943645	None:intergenic	30.0%
CAATTCACTATTCAATTCGA+TGG	-	chr4_2:50943633-50943652	Msa0605190:intron	30.0%
AAAATGAAAAGGTTGAAGGA+AGG	+	chr4_2:50943799-50943818	None:intergenic	30.0%
CCGTCAATTTCATATACTTA+GGG	+	chr4_2:50944074-50944093	None:intergenic	30.0%
CCCTAAGTATATGAAATTGA+CGG	-	chr4_2:50944071-50944090	Msa0605190:intron	30.0%
CCTAAGTATATGAAATTGAC+GGG	-	chr4_2:50944072-50944091	Msa0605190:intron	30.0%
CTAAGTATATGAAATTGACG+GGG	-	chr4_2:50944073-50944092	Msa0605190:intron	30.0%
TGGTTTAGAGACTAAATTGA+TGG	-	chr4_2:50944146-50944165	Msa0605190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	50943473	50947696	50943473	ID=Msa0605190;Name=Msa0605190
chr4_2	mRNA	50943473	50947696	50943473	ID=Msa0605190-mRNA-1;Parent=Msa0605190;Name=Msa0605190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=179\|0.83\|0.85\|1\|1\|1\|7\|0\|599
chr4_2	exon	50943473	50943639	50943473	ID=Msa0605190-mRNA-1:exon:12137;Parent=Msa0605190-mRNA-1
chr4_2	exon	50944280	50944416	50944280	ID=Msa0605190-mRNA-1:exon:12136;Parent=Msa0605190-mRNA-1
chr4_2	exon	50944499	50945059	50944499	ID=Msa0605190-mRNA-1:exon:12135;Parent=Msa0605190-mRNA-1
chr4_2	exon	50945297	50945780	50945297	ID=Msa0605190-mRNA-1:exon:12134;Parent=Msa0605190-mRNA-1
chr4_2	exon	50946224	50946500	50946224	ID=Msa0605190-mRNA-1:exon:12133;Parent=Msa0605190-mRNA-1
chr4_2	exon	50946590	50946622	50946590	ID=Msa0605190-mRNA-1:exon:12132;Parent=Msa0605190-mRNA-1
chr4_2	exon	50947377	50947696	50947377	ID=Msa0605190-mRNA-1:exon:12131;Parent=Msa0605190-mRNA-1
chr4_2	five_prime_UTR	50947518	50947696	50947518	ID=Msa0605190-mRNA-1:five_prime_utr;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50947377	50947517	50947377	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50946590	50946622	50946590	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50946224	50946500	50946224	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50945297	50945780	50945297	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50944499	50945059	50944499	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50944280	50944416	50944280	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1
chr4_2	CDS	50943473	50943639	50943473	ID=Msa0605190-mRNA-1:cds;Parent=Msa0605190-mRNA-1

Gene Sequence

>Msa0605190

ATGGACGACGATTACGCTTCCACCGATGAAGATTATCAATACTCCGATCAAGACGTCGAAGAAGAAGATTCCGTCGGTGAATTCTACGAAAACGACGACGATTCTATTCAGTTGCCCTCTTCTATTGCTCCCGCTGCTCAGGTGATTACGAAGGAATCACTGATAGTTGCACAGAAGGAGGACTTGCGCAGAGTGATGGACATGCTTTCTGTAAGACAAGAACATGCACGCATAATGCTTATTTATCATCGTTGGGATGTGGAAAAATTGTTTGAAGTTTATGTAGAAAAAGGGAAGGCATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAATATCATGACTCTGGCTCGCTGGATAGTGCTATAGTAATGTGTGAAATTTGCATGGACGACATTCCTAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAATACCTGTTGGACACAGCATTTCTTTGTCAAGGTAAACGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAATGCAATTCGATTTGTGATGAAGCTGTCGTAAGAACTTTACTTGGTAGAAAGCACCCTGATATGGCAGAGAAGTATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGTTGGGGGTGATGATGACTTGTGTGAGGTAGAATGTTCATGTGGTGAACAATTTTGTTTTAAATGCTTGTCAGAAGCACACTCCCCCTGTTCGTGTTTGATGTGGGAGCTCTGGGAAAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAATCCTGTCCAAAGTGCCACAAACCGGTGGAGAAAAATGGTGGTTGTAATTTGGTTAGCTGTATTTGCGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGTGATCATACTTGGTCAAGTATAGCTGGTCACAGCTGTGGTCGCTACAAAGATCAAGAGAAATCAGCTGAGCGGGCAAAAAGGGATCTCTATAGGTACATGCATTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGATATCATACAAGGGAAAATTTCTATTACAGAAGAAAAACATTCTGGACGAAAAAAAACTGAACTCAATGATTATAGCTGGGTAAATAATGGACTCTTGAGACTTTTCAGATCTAGACGCGTCCTTTCATATTCATATGCGTTTGCGTTTTATATGTTTGGAGATGAGCTTTTTAAAGAACAAATGTCAGAAGCTGAAAGGGAAATGAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTAGAGGCAAATGTTGAAAAACTCTCTAAGATTTTGGAGGAGCCTTTCGACACCTTTAAATATGCTAAACTTATGGAGATAAGGATGCAGATAATAACTCTGTCTGCACTCATTGATGATCTTTGTAAAAAAATGTATGAGTGCATCGACAATGATTTATTGGATTCTATTAATCTCGGCAGTGTCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAAAGCTTCAGAGCTTCCAGTTTGTTGGAGCAATAAAGCTGACAATACGGAAATGTTACTGAGTGAAAAGGATTCTTGTATATATGCTGCAAGCGTAGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGTGCCAGAGAAGAAGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAAGTTGTAGACAGAAATTGA

Protein sequence

>Msa0605190

MDDDYASTDEDYQYSDQDVEEEDSVGEFYENDDDSIQLPSSIAPAAQVITKESLIVAQKEDLRRVMDMLSVRQEHARIMLIYHRWDVEKLFEVYVEKGKAFMFAQAGVSVDEYHDSGSLDSAIVMCEICMDDIPSDEATRMDCGHCFCNTCWTQHFFVKVNEGQSKRIRCMAHKCNSICDEAVVRTLLGRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVGGDDDLCEVECSCGEQFCFKCLSEAHSPCSCLMWELWEKKCRDESETVNWITVHTKSCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRYKDQEKSAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKDIIQGKISITEEKHSGRKKTELNDYSWVNNGLLRLFRSRRVLSYSYAFAFYMFGDELFKEQMSEAEREMKQNLFEDQQQQLEANVEKLSKILEEPFDTFKYAKLMEIRMQIITLSALIDDLCKKMYECIDNDLLDSINLGSVHSIAPYKSKGIEKASELPVCWSNKADNTEMLLSEKDSCIYAASVGVTAELNQSEESGCSSRKRAREEGGFFDLNLPAEVVDRN*