AlfalfaGEDB | Msa0605310

M. sativa cultivar zhongmu-4 / Msa0605310

KEGG: K13513
GO: -
PFAM: PF01553.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605310	XP_013456372.1	97.849	372	8	0	1	372	1	372	0.0	752

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605310	sp\|Q9LHN4\|LPAT5_ARATH	63.202	356	129	1	18	371	12	367	5.50e-175	494

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0605310	Msa1051900	0.805418	1.347940e-49	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605310	MtrunA17_Chr4g0034511	97.849	372	8	0	1	372	1	372	0.0	752
Msa0605310	MtrunA17_Chr1g0154581	61.853	367	139	1	1	366	1	367	5.86e-170	479
Msa0605310	MtrunA17_Chr1g0173711	38.095	231	140	3	98	326	84	313	1.96e-48	168
Msa0605310	MtrunA17_Chr7g0258001	33.065	248	163	2	96	340	82	329	9.06e-46	161
Msa0605310	MtrunA17_Chr2g0328811	37.864	206	125	2	96	299	82	286	7.34e-45	159

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605310	AT3G18850.1	63.202	356	129	1	18	371	12	367	5.59e-176	494
Msa0605310	AT3G18850.4	63.202	356	129	1	18	371	12	367	5.59e-176	494
Msa0605310	AT3G18850.2	63.202	356	129	1	18	371	12	367	5.59e-176	494
Msa0605310	AT3G18850.3	63.202	356	129	1	18	371	12	367	5.59e-176	494
Msa0605310	AT3G18850.5	63.303	327	118	1	47	371	18	344	1.31e-161	457
Msa0605310	AT1G75020.2	60.446	359	139	2	14	371	13	369	1.67e-157	447
Msa0605310	AT1G75020.1	60.446	359	139	2	14	371	13	369	1.67e-157	447
Msa0605310	AT3G18850.6	56.818	220	93	1	154	371	17	236	9.39e-94	280
Msa0605310	AT3G57650.1	36.820	239	147	2	97	331	82	320	4.94e-49	170
Msa0605310	AT1G51260.1	30.696	316	207	7	28	337	12	321	6.21e-41	148

Showing 1 to 10 of 10 entries

Previous1Next

Find 100 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCAAGAATGGGTTG+TGG	0.641853	4_2:+51142685	None:intergenic
AAACCCCTTAGAAATCTAAA+AGG	0.358797	4_2:+51144397	None:intergenic
AAAGCAACTTGTCCTTAAAT+CGG	0.413361	4_2:+51142908	None:intergenic
AAATGCCCTTCACAGCAGGG+AGG	0.725667	4_2:+51142836	None:intergenic
AAATTTCATCTTCAGATGTT+GGG	0.418091	4_2:+51142953	None:intergenic
AACTTTGAAACAGTTGTGGA+GGG	0.636078	4_2:-51146182	Msa0605310:five_prime_UTR
AAGACTAAAGTTGTGTTCTC+TGG	0.436607	4_2:-51144205	Msa0605310:CDS
AAGATAGAATTAAGAAAGTG+AGG	0.497353	4_2:+51146091	None:intergenic
AAGGGGTTTGGTGTGTCTAT+TGG	0.322223	4_2:-51144383	Msa0605310:CDS
AAGTCGACTGGATGTATTTA+TGG	0.192495	4_2:-51144129	Msa0605310:CDS

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTCACTATTCATCAAAACG+AGG	-	chr4_2:51142658-51142677	Msa0605310:exon	30.0%
TTGATCTCAATGTTTGTTTG+TGG	-	chr4_2:51142735-51142754	Msa0605310:CDS	30.0%
AATGTTACAAGCTTGATCAA+AGG	-	chr4_2:51142765-51142784	Msa0605310:CDS	30.0%
TTGCTTGATGAATGCTTTAT+TGG	-	chr4_2:51142829-51142848	Msa0605310:CDS	30.0%
CTTTACCACAGACAAAAAAA+AGG	+	chr4_2:51142888-51142907	None:intergenic	30.0%
TAAACCCCAGAAAGAAAAAA+AGG	-	chr4_2:51142987-51143006	Msa0605310:CDS	30.0%
AAACCCCAGAAAGAAAAAAA+GGG	-	chr4_2:51142988-51143007	Msa0605310:CDS	30.0%
ACCACATTATGCAAATGAAA+AGG	+	chr4_2:51143026-51143045	None:intergenic	30.0%
TGGATCACTTGAAAAATGAT+AGG	-	chr4_2:51143179-51143198	Msa0605310:intron	30.0%
GGATCACTTGAAAAATGATA+GGG	-	chr4_2:51143180-51143199	Msa0605310:intron	30.0%

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	51142522	51146217	51142522	ID=Msa0605310;Name=Msa0605310
chr4_2	mRNA	51142522	51146217	51142522	ID=Msa0605310-mRNA-1;Parent=Msa0605310;Name=Msa0605310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=456\|1\|1\|1\|0.66\|0.5\|4\|153\|372
chr4_2	exon	51142522	51143090	51142522	ID=Msa0605310-mRNA-1:exon:12220;Parent=Msa0605310-mRNA-1
chr4_2	exon	51143401	51143531	51143401	ID=Msa0605310-mRNA-1:exon:12219;Parent=Msa0605310-mRNA-1
chr4_2	exon	51143905	51144667	51143905	ID=Msa0605310-mRNA-1:exon:12218;Parent=Msa0605310-mRNA-1
chr4_2	exon	51145953	51146217	51145953	ID=Msa0605310-mRNA-1:exon:12217;Parent=Msa0605310-mRNA-1
chr4_2	five_prime_UTR	51145953	51146217	51145953	ID=Msa0605310-mRNA-1:five_prime_utr;Parent=Msa0605310-mRNA-1
chr4_2	five_prime_UTR	51144477	51144667	51144477	ID=Msa0605310-mRNA-1:five_prime_utr;Parent=Msa0605310-mRNA-1
chr4_2	CDS	51143905	51144476	51143905	ID=Msa0605310-mRNA-1:cds;Parent=Msa0605310-mRNA-1
chr4_2	CDS	51143401	51143531	51143401	ID=Msa0605310-mRNA-1:cds;Parent=Msa0605310-mRNA-1
chr4_2	CDS	51142675	51143090	51142675	ID=Msa0605310-mRNA-1:cds;Parent=Msa0605310-mRNA-1
chr4_2	three_prime_UTR	51142522	51142674	51142522	ID=Msa0605310-mRNA-1:three_prime_utr;Parent=Msa0605310-mRNA-1

Gene Sequence

>Msa0605310

ATGGCGGTTCTTACGCGTGTAACTTCAAAACTTGGAGCAAAGTATCGTGCTCTAGCTCCTTTTAGATTTCTAAGGGGTTTGGTGTGTCTATTGGTGCTGGTTTCATCAGCATTTGTAACATTGGTGTTCTTCGGTTTTATTAGTTCTGTTATAATGCGATTTTTTAGCATCAGTTACAGCAGGAAAACAACGTCGTTTTTCTTTGGTACTTGGCTAACTTTGTGGCCCTTTCTATTTGAAAAAATCAACAAGACTAAAGTTGTGTTCTCTGGAGATATTGTTCCTTCGAGAGAACGGATTGTGCTGATCGCAAATCACCGAACTGAAGTCGACTGGATGTATTTATGGGACCTTGCGTTGCGGAAGGGATGCATTGGATACATTAAATATGTACTTAAGAGCAGCTTGATGAGACTTCCAATTTTTGGTTGGGCATTTCACATACTAGAGTTCATCCCAGTGGAAAGGAAGTGGGAAGCTGATGAGTCAAATATGCGTCGAATGCTTTCTACATTCAATGATCCCCAAGATCCTCTCTGGCTTGCTATTTTCCCTGAAGGCACTGATTTTACTGAGCAGAAGTGCCTTCGAAGTCAAAAATATGCGGCTGAACACGGGTTACCGATTCTGAAAAATGTTTTACTGCCGAAAACCAAGGGCTTTTGTACCTGTTTGCAAGAGTTGCGAGGCTCTCTAAATGCAGTTTACGATGTTACCATTGGCTACAAATACCGCTGCCCGTCTTTCTTGGACAATGTATTTGGAGTGGATCCTTCCGAAGTTCATATCCATATCTGCCGCTTTCCCATCCACTGTATCCCAACATCTGAAGATGAAATTTCTACGTGGTTGATGGATAGATTCCGATTTAAGGACAAGTTGCTTTACAATTTTCAATTTCAAGGCCAGTTTCCTGATCAAGCAAAAGAGAGGGACCTCCCTGCTGTGAAGGGCATTTTAAATTGTGTGACAGTGATTATATTGACTGGCTTATGCATGTACTTCACTTTTTCCTCTGTCTGGTTTAAACTTTACGTGTCTGTAGTCGTCGCTTATTTGGTTCCGGCTACATATTTCAACATTCGGCCACAACCCATTCTTGGAGTTTTTAAGATGTGA

Protein sequence

>Msa0605310

MAVLTRVTSKLGAKYRALAPFRFLRGLVCLLVLVSSAFVTLVFFGFISSVIMRFFSISYSRKTTSFFFGTWLTLWPFLFEKINKTKVVFSGDIVPSRERIVLIANHRTEVDWMYLWDLALRKGCIGYIKYVLKSSLMRLPIFGWAFHILEFIPVERKWEADESNMRRMLSTFNDPQDPLWLAIFPEGTDFTEQKCLRSQKYAAEHGLPILKNVLLPKTKGFCTCLQELRGSLNAVYDVTIGYKYRCPSFLDNVFGVDPSEVHIHICRFPIHCIPTSEDEISTWLMDRFRFKDKLLYNFQFQGQFPDQAKERDLPAVKGILNCVTVIILTGLCMYFTFSSVWFKLYVSVVVAYLVPATYFNIRPQPILGVFKM*