AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051900 MtrunA17_Chr7g0221551 97.174 460 13 0 1 460 1 460 0.0 935
Msa1051900 MtrunA17_Chr3g0131731 69.828 464 128 4 9 460 1 464 0.0 681
Msa1051900 MtrunA17_Chr8g0385871 68.113 461 136 3 8 460 8 465 0.0 671
Msa1051900 MtrunA17_Chr3g0094811 63.825 434 154 1 24 457 24 454 0.0 602
Msa1051900 MtrunA17_Chr2g0304931 59.174 436 169 5 25 457 33 462 0.0 530
Msa1051900 MtrunA17_Chr3g0126051 47.936 436 214 6 31 458 34 464 4.42e-146 426
Msa1051900 MtrunA17_Chr1g0204191 48.157 434 195 5 26 458 87 491 1.13e-143 420
Msa1051900 MtrunA17_Chr5g0431301 45.733 457 236 8 11 457 7 461 1.11e-140 411
Msa1051900 MtrunA17_Chr3g0126031 46.544 434 219 7 31 457 29 456 5.37e-140 409
Msa1051900 MtrunA17_Chr7g0219051 43.243 444 226 8 29 458 34 465 9.39e-121 360
Msa1051900 MtrunA17_Chr4g0020241 42.466 438 231 8 24 457 67 487 1.34e-116 350
Msa1051900 MtrunA17_Chr3g0090331 42.166 434 230 8 29 457 73 490 1.28e-115 348
Msa1051900 MtrunA17_Chr3g0118851 42.791 430 222 11 29 453 76 486 8.44e-113 341
Msa1051900 MtrunA17_Chr3g0118841 42.791 430 221 10 29 453 77 486 8.51e-112 338
Msa1051900 MtrunA17_Chr4g0038311 37.053 475 271 10 1 459 3 465 4.75e-110 333
Msa1051900 MtrunA17_Chr1g0199991 38.925 465 253 12 3 457 13 456 8.84e-110 332
Msa1051900 MtrunA17_Chr3g0118881 41.986 443 223 13 29 457 76 498 1.06e-109 333
Msa1051900 MtrunA17_Chr4g0047861 41.535 443 232 9 31 457 54 485 3.06e-108 329
Msa1051900 MtrunA17_Chr1g0199971 40.091 439 240 12 29 457 31 456 7.03e-104 317
Msa1051900 MtrunA17_Chr2g0281621 39.909 441 240 8 31 457 36 465 1.45e-102 314
Msa1051900 MtrunA17_Chr1g0165811 58.436 243 97 2 29 271 29 267 6.24e-101 303
Msa1051900 MtrunA17_Chr3g0118891 41.860 430 193 13 29 453 76 453 1.17e-100 309
Msa1051900 MtrunA17_Chr1g0153881 40.367 436 229 12 29 458 88 498 7.78e-100 308
Msa1051900 MtrunA17_Chr3g0118861 40.868 438 199 12 29 453 74 464 8.69e-100 307
Msa1051900 MtrunA17_Chr2g0309541 38.249 434 246 11 34 457 42 463 2.28e-99 306
Msa1051900 MtrunA17_Chr1g0153941 38.865 458 232 11 29 458 76 513 2.40e-99 307
Msa1051900 MtrunA17_Chr3g0118831 40.323 434 204 9 29 457 76 459 3.63e-99 305
Msa1051900 MtrunA17_Chr2g0309521 35.776 464 277 11 3 457 11 462 7.43e-99 304
Msa1051900 MtrunA17_Chr2g0309511 35.991 464 276 11 3 457 11 462 8.73e-99 304
Msa1051900 MtrunA17_Chr4g0068841 38.731 457 236 11 29 457 37 477 3.45e-97 300
Msa1051900 MtrunA17_Chr2g0318911 36.188 467 260 14 1 453 17 459 1.15e-92 288
Msa1051900 MtrunA17_Chr2g0281641 38.974 390 215 9 82 457 7 387 3.13e-85 266
Msa1051900 MtrunA17_Chr4g0068861 35.784 408 224 13 29 412 83 476 2.30e-77 249
Msa1051900 MtrunA17_Chr1g0165821 62.431 181 66 1 279 459 2 180 1.29e-73 229
Msa1051900 MtrunA17_Chr7g0229651 51.980 202 95 1 206 405 1 202 4.95e-68 216
Msa1051900 MtrunA17_Chr1g0153931 55.738 183 75 3 30 206 75 257 2.15e-64 209
Msa1051900 MtrunA17_Chr7g0234051 32.454 493 251 17 26 456 23 495 1.98e-63 213
Msa1051900 MtrunA17_Chr8g0338461 30.485 515 272 19 3 456 6 495 4.04e-60 204
Msa1051900 MtrunA17_Chr7g0249431 30.814 516 279 21 1 456 1 498 6.07e-57 196
Msa1051900 MtrunA17_Chr1g0171411 29.673 428 257 15 42 453 81 480 1.46e-52 184
Msa1051900 MtrunA17_Chr1g0199171 29.778 450 266 17 25 453 66 486 9.61e-51 179
Msa1051900 MtrunA17_Chr4g0009681 27.119 472 307 14 6 456 12 467 2.99e-49 174
Msa1051900 MtrunA17_Chr4g0009701 27.119 472 305 16 7 456 16 470 3.45e-49 174
Msa1051900 MtrunA17_Chr7g0234041 31.871 433 232 16 31 415 27 444 1.75e-48 172
Msa1051900 MtrunA17_Chr4g0009711 26.216 473 308 17 7 456 16 470 1.01e-47 171
Msa1051900 MtrunA17_Chr4g0009661 27.406 478 296 15 7 456 16 470 2.24e-47 169
Msa1051900 MtrunA17_Chr4g0009651 26.160 474 307 16 7 456 16 470 3.83e-47 169
Msa1051900 MtrunA17_Chr2g0285351 26.496 468 302 14 16 456 17 469 1.01e-46 168
Msa1051900 MtrunA17_Chr2g0285371 26.846 447 289 12 34 456 37 469 1.92e-46 167
Msa1051900 MtrunA17_Chr3g0133011 27.291 491 305 14 3 456 21 496 2.47e-46 167
Msa1051900 MtrunA17_Chr2g0327401 29.561 433 245 20 46 454 102 498 2.76e-46 167
Msa1051900 MtrunA17_Chr4g0028271 28.671 429 261 16 41 453 94 493 1.46e-44 162
Msa1051900 MtrunA17_Chr2g0285381 28.153 444 280 15 34 456 40 465 1.71e-44 162
Msa1051900 MtrunA17_Chr4g0009671 26.471 442 285 14 37 456 12 435 7.85e-44 159
Msa1051900 MtrunA17_Chr4g0028261 29.302 430 271 16 36 454 109 516 5.21e-43 159
Msa1051900 MtrunA17_Chr4g0009641 26.395 466 292 15 7 456 16 446 1.25e-42 156
Msa1051900 MtrunA17_Chr4g0028241 29.011 455 277 18 14 454 68 490 5.00e-42 155
Msa1051900 MtrunA17_Chr4g0028281 28.205 429 255 16 46 454 97 492 1.66e-41 154
Msa1051900 MtrunA17_Chr2g0327381 26.608 451 280 15 46 454 96 537 1.02e-40 153
Msa1051900 MtrunA17_Chr3g0093971 25.054 463 303 14 12 451 8 449 1.38e-39 148
Msa1051900 MtrunA17_Chr2g0327371 27.494 451 261 18 47 454 86 513 9.29e-39 147
Msa1051900 MtrunA17_Chr5g0447441 26.364 440 284 11 21 451 24 432 1.07e-33 132
Msa1051900 MtrunA17_Chr4g0009721 23.729 472 276 17 6 456 11 419 6.09e-33 129
Msa1051900 MtrunA17_Chr7g0229631 60.465 86 33 1 29 114 32 116 1.06e-29 113
Msa1051900 MtrunA17_Chr4g0044051 26.588 425 258 14 46 451 47 436 1.59e-28 117
Msa1051900 MtrunA17_Chr1g0153921 31.646 237 140 7 222 458 3 217 4.93e-28 110
Msa1051900 MtrunA17_Chr7g0229611 54.430 79 35 1 29 107 24 101 6.86e-23 92.8
Msa1051900 MtrunA17_Chr7g0229621 54.430 79 35 1 29 107 24 101 4.60e-22 90.9
Msa1051900 MtrunA17_Chr2g0279371 30.508 177 102 4 31 201 28 189 3.61e-21 90.9
Msa1051900 MtrunA17_Chr4g0027731 25.909 440 271 16 47 452 36 454 6.66e-19 89.0
Msa1051900 MtrunA17_Chr7g0264221 43.333 90 49 2 372 460 13 101 1.31e-17 78.6
Msa1051900 MtrunA17_Chr4g0006541 40.816 98 55 1 183 280 7 101 7.30e-17 76.3
Msa1051900 MtrunA17_Chr2g0320571 26.573 429 269 15 47 440 36 453 2.71e-13 71.6
Msa1051900 MtrunA17_Chr2g0281631 51.923 52 25 0 31 82 46 97 4.51e-13 65.9
Msa1051900 MtrunA17_Chr7g0229641 58.140 43 18 0 156 198 43 85 4.18e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051900 AT1G28110.1 79.724 434 88 0 27 460 28 461 0.0 740
Msa1051900 AT1G28110.2 79.724 434 88 0 27 460 28 461 0.0 740
Msa1051900 AT2G33530.1 71.183 465 129 2 1 460 1 465 0.0 714
Msa1051900 AT1G43780.1 48.394 467 222 10 9 459 9 472 4.31e-149 434
Msa1051900 AT2G12480.3 45.610 467 234 10 5 459 1 459 3.74e-140 410
Msa1051900 AT5G42240.1 47.072 444 224 7 23 457 23 464 2.59e-139 408
Msa1051900 AT5G42230.1 44.737 456 241 7 13 459 9 462 5.61e-138 405
Msa1051900 AT5G42230.2 44.737 456 241 7 13 459 9 462 5.61e-138 405
Msa1051900 AT2G12480.4 44.516 465 218 10 5 459 1 435 4.67e-133 391
Msa1051900 AT2G12480.1 43.871 465 219 10 5 459 1 433 1.78e-130 385
Msa1051900 AT2G12480.2 43.777 466 219 11 5 459 1 434 1.17e-128 380
Msa1051900 AT2G24010.1 42.009 438 232 9 31 460 31 454 2.92e-116 349
Msa1051900 AT3G02110.1 40.980 449 234 9 29 458 36 472 2.91e-115 347
Msa1051900 AT3G63470.1 42.923 431 229 8 31 458 82 498 3.74e-115 348
Msa1051900 AT4G30610.1 39.732 448 241 10 29 460 31 465 2.00e-113 342
Msa1051900 AT2G24000.1 40.576 451 234 13 29 460 29 464 1.57e-111 337
Msa1051900 AT2G05850.1 40.503 437 236 9 31 458 64 485 4.01e-111 337
Msa1051900 AT2G24010.2 40.397 453 233 10 31 460 31 469 6.40e-111 335
Msa1051900 AT5G08260.1 37.882 491 250 11 4 459 8 478 5.26e-110 333
Msa1051900 AT3G07990.1 40.632 443 232 11 29 457 32 457 1.84e-108 329
Msa1051900 AT2G35780.1 38.565 446 251 10 21 457 20 451 1.43e-107 327
Msa1051900 AT4G30810.1 37.953 469 258 13 6 456 8 461 4.47e-106 323
Msa1051900 AT2G35770.1 38.395 461 262 10 4 457 13 458 1.27e-105 322
Msa1051900 AT3G17180.1 40.347 461 241 9 19 457 27 475 1.60e-105 322
Msa1051900 AT2G24010.3 38.285 478 233 11 31 460 2 465 1.62e-105 322
Msa1051900 AT3G52010.1 41.230 439 229 13 31 458 65 485 7.42e-104 318
Msa1051900 AT1G61130.1 40.590 441 236 13 31 457 32 460 1.43e-103 317
Msa1051900 AT1G11080.2 38.144 485 257 11 5 457 16 489 5.10e-103 316
Msa1051900 AT1G11080.1 38.144 485 257 11 5 457 16 489 5.61e-103 316
Msa1051900 AT4G15100.1 38.377 456 249 10 22 456 36 480 8.94e-102 313
Msa1051900 AT5G23210.1 36.052 466 253 10 23 457 44 495 1.45e-100 310
Msa1051900 AT3G52000.1 40.596 436 232 13 31 458 64 480 2.23e-98 304
Msa1051900 AT3G52020.1 38.851 435 242 11 31 457 80 498 9.34e-96 298
Msa1051900 AT3G17180.2 38.942 416 220 9 19 412 27 430 6.44e-88 275
Msa1051900 AT5G23210.3 34.917 421 230 9 23 412 44 451 5.72e-86 271
Msa1051900 AT5G23210.5 35.122 410 221 10 79 457 5 400 1.18e-79 253
Msa1051900 AT5G23210.2 34.975 406 219 10 83 457 8 399 2.89e-78 249
Msa1051900 AT2G24010.4 38.462 364 192 8 31 371 2 356 6.38e-78 247
Msa1051900 AT3G25420.1 33.465 505 264 17 9 456 5 494 2.82e-69 229
Msa1051900 AT4G12910.1 33.333 468 259 13 31 453 35 494 2.02e-65 219
Msa1051900 AT5G23210.4 33.518 361 196 9 83 412 8 355 1.03e-63 210
Msa1051900 AT1G33540.1 30.088 452 274 14 31 456 29 464 1.00e-57 197
Msa1051900 AT2G22990.1 29.128 436 268 13 34 456 26 433 4.58e-57 195
Msa1051900 AT1G73300.1 29.195 435 267 15 34 456 36 441 1.71e-56 194
Msa1051900 AT1G73300.2 29.195 435 267 15 34 456 36 441 1.71e-56 194
Msa1051900 AT1G73280.1 28.850 461 285 16 8 456 12 441 6.67e-56 192
Msa1051900 AT1G33540.2 29.724 434 264 13 48 456 4 421 5.02e-55 189
Msa1051900 AT1G73290.1 30.275 436 259 15 34 456 35 438 8.86e-55 189
Msa1051900 AT5G36180.1 28.767 438 271 15 31 456 33 441 1.11e-53 186
Msa1051900 AT3G12230.1 29.399 449 254 15 31 456 27 435 1.71e-53 185
Msa1051900 AT3G56540.1 56.494 154 64 2 31 182 80 232 2.87e-53 180
Msa1051900 AT3G12240.1 29.581 453 248 16 31 456 28 436 7.52e-53 184
Msa1051900 AT4G12910.2 32.168 429 238 13 31 414 35 455 9.76e-52 181
Msa1051900 AT3G10450.1 28.702 439 270 15 31 456 29 437 1.34e-51 181
Msa1051900 AT5G09640.1 28.698 453 282 14 31 456 27 465 1.64e-51 181
Msa1051900 AT3G12203.3 28.054 442 262 12 34 456 12 416 2.25e-51 179
Msa1051900 AT3G12203.1 28.054 442 262 12 34 456 33 437 3.76e-51 179
Msa1051900 AT2G22970.1 28.929 439 263 15 34 456 28 433 9.75e-51 178
Msa1051900 AT2G22990.5 28.211 436 263 14 34 456 26 424 1.06e-50 177
Msa1051900 AT2G22990.3 29.095 409 254 11 34 431 26 409 1.16e-50 178
Msa1051900 AT2G23000.1 28.090 445 269 14 31 456 25 437 1.41e-50 177
Msa1051900 AT2G23000.2 28.090 445 269 14 31 456 25 437 1.41e-50 177
Msa1051900 AT2G22990.4 29.268 410 250 12 34 430 26 408 1.48e-50 177
Msa1051900 AT3G12220.1 28.604 437 273 13 31 456 27 435 1.69e-50 177
Msa1051900 AT3G10450.2 28.741 421 258 14 48 456 4 394 2.33e-50 176
Msa1051900 AT2G24000.2 29.241 448 226 16 29 460 29 401 5.51e-50 175
Msa1051900 AT2G23010.1 26.681 461 301 12 8 456 2 437 6.13e-50 176
Msa1051900 AT2G22920.2 28.475 446 258 16 34 456 28 435 6.19e-50 176
Msa1051900 AT1G73310.1 28.833 437 266 16 34 456 36 441 1.41e-49 175
Msa1051900 AT2G22980.1 26.606 436 273 14 34 456 29 430 3.91e-49 174
Msa1051900 AT2G23010.2 26.464 461 302 12 8 456 2 437 4.21e-49 174
Msa1051900 AT3G12220.2 28.878 419 260 13 48 456 15 405 4.44e-49 173
Msa1051900 AT1G73270.2 26.712 438 280 13 31 456 33 441 7.45e-49 173
Msa1051900 AT1G73270.1 26.712 438 280 13 31 456 33 441 9.92e-49 173
Msa1051900 AT3G45010.1 28.995 438 262 19 36 454 92 499 3.83e-48 173
Msa1051900 AT3G12203.2 27.644 416 246 11 59 456 1 379 2.12e-47 168
Msa1051900 AT5G22980.1 28.638 426 266 16 41 454 95 494 1.18e-45 166
Msa1051900 AT2G22970.4 28.744 414 247 14 34 431 28 409 5.26e-44 159
Msa1051900 AT3G10450.4 28.019 414 256 14 31 431 29 413 5.48e-44 159
Msa1051900 AT2G22970.3 28.814 413 246 14 34 430 28 408 1.27e-43 159
Msa1051900 AT3G10410.1 27.955 440 272 16 28 452 84 493 1.66e-43 160
Msa1051900 AT2G22980.2 26.521 411 256 13 34 431 29 406 4.32e-43 157
Msa1051900 AT2G22980.4 26.253 419 263 13 34 439 29 414 5.58e-43 157
Msa1051900 AT1G73290.3 29.620 395 234 14 34 415 35 398 8.88e-43 156
Msa1051900 AT3G10450.3 28.030 396 244 13 48 431 4 370 1.03e-42 155
Msa1051900 AT1G73310.2 28.000 400 244 15 34 419 36 405 2.49e-39 147
Msa1051900 AT2G22920.1 28.148 405 231 15 34 415 28 395 2.87e-39 146
Msa1051900 AT1G73280.4 27.809 356 225 12 105 456 12 339 2.24e-38 142
Msa1051900 AT1G73290.2 34.545 220 132 5 34 243 35 252 2.78e-37 139
Msa1051900 AT2G22990.6 27.405 343 221 9 117 456 2 319 3.20e-37 139
Msa1051900 AT5G36180.5 27.809 356 225 12 105 456 12 339 9.72e-37 138
Msa1051900 AT5G36180.3 27.809 356 225 12 105 456 12 339 9.72e-37 138
Msa1051900 AT1G73280.2 29.143 350 212 12 8 345 12 337 1.54e-36 138
Msa1051900 AT2G22990.2 27.114 343 222 9 117 456 2 319 1.99e-36 137
Msa1051900 AT1G73280.3 27.778 342 215 12 119 456 1 314 2.35e-35 134
Msa1051900 AT3G12220.3 28.846 364 227 12 31 379 27 373 7.98e-34 131
Msa1051900 AT2G22920.4 33.790 219 133 5 34 242 28 244 1.09e-32 126
Msa1051900 AT2G22970.2 34.529 223 125 7 34 242 28 243 4.95e-32 125
Msa1051900 AT2G22980.3 27.900 319 193 11 34 340 29 322 5.22e-31 122
Msa1051900 AT5G36180.2 27.190 331 210 11 105 431 12 315 8.04e-30 119
Msa1051900 AT1G15000.1 26.841 421 267 13 46 456 37 426 8.69e-29 118
Msa1051900 AT5G36180.4 26.752 314 199 11 105 414 12 298 5.32e-24 102
Msa1051900 AT1G73310.3 26.791 321 200 12 105 419 12 303 6.00e-24 102
Msa1051900 AT2G22980.5 23.750 320 207 10 117 431 2 289 3.33e-23 99.8
Msa1051900 AT5G22960.1 33.529 170 90 5 36 202 25 174 7.42e-22 93.2
Msa1051900 AT2G27920.1 25.109 458 302 14 11 440 1 445 1.93e-20 94.0
Msa1051900 AT2G22920.3 25.094 267 159 10 199 456 22 256 5.88e-18 84.0

Find 87 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAATTTGTGATCTTATT+AGG 0.075907 7_2:+19658474 None:intergenic
GAGAAGTTGTTTAATTTAAA+AGG 0.202110 7_2:-19656668 Msa1051900:CDS
GGTGGTTGGACTCAAGTTTA+TGG 0.215056 7_2:-19654225 Msa1051900:CDS
ATCTAATCTTCTTGCAAAAC+TGG 0.232198 7_2:-19657084 Msa1051900:CDS
TTTCAGAAAATGGGCCATTT+AGG 0.242646 7_2:-19658185 Msa1051900:CDS
GCTTCTCCTTTAGGCCTAAA+TGG 0.254584 7_2:+19658171 None:intergenic
AAGCTTCTGTTTCTGTATTC+AGG 0.258582 7_2:+19657049 None:intergenic
CCTTACAGGGTGTGGTTTGC+AGG 0.266155 7_2:-19654442 Msa1051900:CDS
CTAACCAAAGCTTCTCCTTT+AGG 0.269711 7_2:+19658162 None:intergenic
TGAATACCACTGTGCCTTAC+AGG 0.289888 7_2:-19654456 Msa1051900:CDS
ATTCAAGAGCTGAGTTCTTT+TGG 0.300704 7_2:-19656268 Msa1051900:CDS
GTAAATTTGTGATCTTATTA+GGG 0.331087 7_2:+19658475 None:intergenic
TATGCTCCAATTCAACAAAA+AGG 0.337276 7_2:-19656690 Msa1051900:CDS
AGACTGTCAATTATCTTAAC+AGG 0.354537 7_2:-19655688 Msa1051900:CDS
GGGCCTGGTTGTTCTTCTCT+TGG 0.358083 7_2:-19658219 Msa1051900:CDS
CTGTTTAAGTCTTTCTTAGA+AGG 0.361000 7_2:-19654126 Msa1051900:CDS
GCTCATTACACTTGAACAAA+TGG 0.365760 7_2:+19656148 None:intergenic
TCTGTTGCAAATTCTAGAAC+TGG 0.381458 7_2:+19656296 None:intergenic
GGTGTAAATGACAAGATTAC+AGG 0.386172 7_2:-19657468 Msa1051900:intron
CAAGGCAGGAGTTCCAGTTT+TGG 0.395452 7_2:-19655099 Msa1051900:CDS
GCTTTACATGCACATCTGAT+TGG 0.395553 7_2:-19655650 Msa1051900:CDS
CACCTGTGTTCCAGCTGAAC+TGG 0.397389 7_2:+19658136 None:intergenic
TACTATCATTTGCAACAGTT+AGG 0.406670 7_2:-19654197 Msa1051900:CDS
AACACTAATCAAAATTCTTC+TGG 0.409071 7_2:+19654093 None:intergenic
TAAGAAAATCCTACTCCAAT+TGG 0.412031 7_2:+19657516 None:intergenic
AGCTTCTGTTTCTGTATTCA+GGG 0.412704 7_2:+19657050 None:intergenic
TAGGCCTAAAGGAGAAGCTT+TGG 0.415723 7_2:-19658166 Msa1051900:CDS
TAGAACTTTAGTACATCAAT+TGG 0.417903 7_2:-19654494 Msa1051900:CDS
AGGTCATTATGTTCCTCAAT+TGG 0.418352 7_2:-19656720 Msa1051900:CDS
ACTATCATTTGCAACAGTTA+GGG 0.420978 7_2:-19654196 Msa1051900:CDS
ACATACCTGTAGACCAAAAC+TGG 0.425053 7_2:+19655086 None:intergenic
GGTGTGGTTTGCAGGCCAAC+AGG 0.436379 7_2:-19654434 Msa1051900:intron
GGTTGTTCTTCTCTTGGTGT+TGG 0.436843 7_2:-19658213 Msa1051900:CDS
TACTTGTTTCTGTACTAACT+TGG 0.447886 7_2:+19656126 None:intergenic
TGGTTAGGAACCAGTTCAGC+TGG 0.449673 7_2:-19658146 Msa1051900:CDS
CCTGCAAACCACACCCTGTA+AGG 0.452020 7_2:+19654442 None:intergenic
CGATCTCTCAGGCTGTGAAA+AGG 0.457438 7_2:+19654155 None:intergenic
CTCATTACACTTGAACAAAT+GGG 0.461870 7_2:+19656149 None:intergenic
CTTTATGTCAATCAGTGTGT+TGG 0.463466 7_2:-19655177 Msa1051900:intron
TTGCCGACAACCGTGATTGT+TGG 0.469285 7_2:+19655128 None:intergenic
CAAAGAGAATTACCTGCTGC+AGG 0.474248 7_2:+19655610 None:intergenic
GATTCAGTTATTCCATTGAC+TGG 0.474345 7_2:-19654520 Msa1051900:CDS
CACCTGAGTATTGAGGACTT+TGG 0.483689 7_2:+19656043 None:intergenic
AAAGTTCTACTTCCAGTCAA+TGG 0.487618 7_2:+19654508 None:intergenic
CAAGAAGATTAGATTATCCC+TGG 0.488331 7_2:+19657093 None:intergenic
CTAAAGGAGAAGCTTTGGTT+AGG 0.492575 7_2:-19658161 Msa1051900:CDS
AGAGGCAAATATGTTGTACT+TGG 0.493990 7_2:-19657544 Msa1051900:CDS
ACGGATACTTCAACTTATGA+AGG 0.498127 7_2:-19657489 Msa1051900:CDS
AGTACTTGCTGCAACTGTAA+AGG 0.501917 7_2:-19658592 Msa1051900:five_prime_UTR
ACTTGAACAAATGGGAGAAA+CGG 0.502123 7_2:+19656157 None:intergenic
AATCAAAATTCTTCTGGTAG+AGG 0.510276 7_2:+19654099 None:intergenic
CAGAAGATATACAAACATCA+AGG 0.511989 7_2:+19656078 None:intergenic
ATCTGATTGGAGTACATAGA+TGG 0.512377 7_2:-19655637 Msa1051900:CDS
AACAGCACAAGCGATCTCTC+AGG 0.518018 7_2:+19654144 None:intergenic
GATCTCTCAGGCTGTGAAAA+GGG 0.519136 7_2:+19654156 None:intergenic
ATAGATGGTCTCCCTGCAGC+AGG 0.526560 7_2:-19655622 Msa1051900:intron
TTGTACTTGGAATCACCAAT+TGG 0.528164 7_2:-19657531 Msa1051900:CDS
GGATTATGAGTTGCGTGACT+TGG 0.530856 7_2:-19655156 Msa1051900:CDS
AACCAGTTCAGCTGGAACAC+AGG 0.532001 7_2:-19658138 Msa1051900:intron
ATCGTAGGAGAGAGCTATGC+CGG 0.540126 7_2:-19657022 Msa1051900:intron
AATGGGCCATTTAGGCCTAA+AGG 0.545330 7_2:-19658177 Msa1051900:CDS
CCACTGTGCCTTACAGGGTG+TGG 0.547254 7_2:-19654450 Msa1051900:CDS
ATACCAACAATCACGGTTGT+CGG 0.552329 7_2:-19655131 Msa1051900:CDS
TGAGAAGATTTGATTTAACA+AGG 0.559426 7_2:+19654067 None:intergenic
ATAAACTCACCTGAGTATTG+AGG 0.563913 7_2:+19656036 None:intergenic
TTGGAATCACCAATTGGAGT+AGG 0.570704 7_2:-19657525 Msa1051900:CDS
AAATCAACATGTGGTTGACC+AGG 0.571157 7_2:+19658453 None:intergenic
AGCATAAGCTCAGCCAATTG+AGG 0.572712 7_2:+19656707 None:intergenic
CATTTATTAAGTAAAATGAC+AGG 0.575747 7_2:-19653916 Msa1051900:three_prime_UTR
CAAATAGCAAGTGACTGAAA+CGG 0.583402 7_2:-19655732 Msa1051900:intron
AAATGTAACATAACAGGGAA+AGG 0.587222 7_2:+19653974 None:intergenic
GAATACCACTGTGCCTTACA+GGG 0.587962 7_2:-19654455 Msa1051900:CDS
TATGTGAGAGAATACTATAA+CGG 0.590701 7_2:-19656182 Msa1051900:CDS
GAGAAGATTTGATTTAACAA+GGG 0.595692 7_2:+19654068 None:intergenic
TGCAGCAACACACATTGCAA+TGG 0.598224 7_2:+19658533 None:intergenic
CTATCATTTGCAACAGTTAG+GGG 0.601913 7_2:-19654195 Msa1051900:CDS
ACACCAAGAGAAGAACAACC+AGG 0.602850 7_2:+19658216 None:intergenic
AATAAGATCACAAATTTACC+TGG 0.604906 7_2:-19658471 Msa1051900:CDS
ATTAGGGTGTGAAACTGCAA+AGG 0.615335 7_2:+19658491 None:intergenic
AGAAGATATACAAACATCAA+GGG 0.621855 7_2:+19656079 None:intergenic
AACCAAAGTCCTCAATACTC+AGG 0.621880 7_2:-19656045 Msa1051900:intron
AAAGAGAATTACCTGCTGCA+GGG 0.624612 7_2:+19655611 None:intergenic
GGTTGTCGGCAAGCTAGTCA+AGG 0.630864 7_2:-19655117 Msa1051900:CDS
ACAACAAAGTAGAGAAGACA+TGG 0.637953 7_2:+19658557 None:intergenic
CTTGGAGATACCAACAATCA+CGG 0.653663 7_2:-19655138 Msa1051900:CDS
AACTGATGAAAATCAACATG+TGG 0.670035 7_2:+19658444 None:intergenic
AACAGAAGCTTGTTCATCGT+AGG 0.672452 7_2:-19657037 Msa1051900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAAAAAAAAAT+TGG - chr7_2:19654794-19654813 Msa1051900:intron 0.0%
!!! GTAAAAAAGTTTTTAAAATA+GGG + chr7_2:19654472-19654491 None:intergenic 10.0%
!!! TTTATTTTCATATACAATAT+TGG + chr7_2:19657676-19657695 None:intergenic 10.0%
!! TTGAACAAAAAATATAATAA+GGG + chr7_2:19658158-19658177 None:intergenic 10.0%
!! TTTGAACAAAAAATATAATA+AGG + chr7_2:19658159-19658178 None:intergenic 10.0%
!!! TTTTTTGTTCAAAATATTAA+TGG - chr7_2:19658166-19658185 Msa1051900:CDS 10.0%
!!! CGTAAAAAAGTTTTTAAAAT+AGG + chr7_2:19654473-19654492 None:intergenic 15.0%
!! ATAAAAATGTTTGAATCAAA+TGG + chr7_2:19655122-19655141 None:intergenic 15.0%
!!! TATTTACATTTTACAATTCT+AGG - chr7_2:19655655-19655674 Msa1051900:CDS 15.0%
!!! AATTACTTTGTTTATTTCTT+TGG - chr7_2:19655690-19655709 Msa1051900:CDS 15.0%
!! AATAAGAAAAGAAGAATAAT+TGG + chr7_2:19655876-19655895 None:intergenic 15.0%
!! TAAAATACAAACTTCAAATT+TGG + chr7_2:19656568-19656587 None:intergenic 15.0%
!! AAAAGATAAAATAAAGTCAA+AGG + chr7_2:19657718-19657737 None:intergenic 15.0%
!! CAATTAATTATGATTTATGA+AGG + chr7_2:19657924-19657943 None:intergenic 15.0%
!! TAAAAAAATGTAACATAACA+GGG + chr7_2:19658525-19658544 None:intergenic 15.0%
!! ATAAAAAAATGTAACATAAC+AGG + chr7_2:19658526-19658545 None:intergenic 15.0%
!! GTAAATTTGTGATCTTATTA+GGG + chr7_2:19654019-19654038 None:intergenic 20.0%
!!! ATACAAAATTAGTTTAGACA+AGG + chr7_2:19654400-19654419 None:intergenic 20.0%
!! TCATATAAATGTTCATGTAT+AGG + chr7_2:19654653-19654672 None:intergenic 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG - chr7_2:19654683-19654702 Msa1051900:intron 20.0%
!!! TTATTCTAAGATCAAATAGA+AGG + chr7_2:19655067-19655086 None:intergenic 20.0%
!! ATTATGTTATGCAAAACTTT+AGG + chr7_2:19655236-19655255 None:intergenic 20.0%
!!! ATGATAAGTTATTGTTTTAC+CGG + chr7_2:19655491-19655510 None:intergenic 20.0%
!! TTAGAATATTCATAACGTAA+GGG + chr7_2:19655545-19655564 None:intergenic 20.0%
!!! TTTAGAATATTCATAACGTA+AGG + chr7_2:19655546-19655565 None:intergenic 20.0%
!!! GTGTTTTGTAATTTATCATT+AGG - chr7_2:19655751-19655770 Msa1051900:intron 20.0%
!!! GAGAAGTTGTTTAATTTAAA+AGG - chr7_2:19655823-19655842 Msa1051900:intron 20.0%
!! ATTGTAAAAACTGAAATTGA+AGG + chr7_2:19656685-19656704 None:intergenic 20.0%
!!! TTTAAAATCATGTTTCTTGT+AGG + chr7_2:19656916-19656935 None:intergenic 20.0%
!!! AGAAACATGATTTTAAATTG+CGG - chr7_2:19656919-19656938 Msa1051900:intron 20.0%
!!! AACATGTTTTATGATAAGAA+AGG + chr7_2:19657247-19657266 None:intergenic 20.0%
!!! TCTTACTTATTACATGTTTT+TGG - chr7_2:19657440-19657459 Msa1051900:intron 20.0%
!!! TTTAGAATAATCTTGTGAAT+AGG - chr7_2:19657593-19657612 Msa1051900:intron 20.0%
!!! GTTTAATGGATTACTTAATT+AGG + chr7_2:19657825-19657844 None:intergenic 20.0%
!! ATTAAGTAATCCATTAAACT+TGG - chr7_2:19657826-19657845 Msa1051900:intron 20.0%
!! TGATAAGTTAAATTTACATC+TGG + chr7_2:19657860-19657879 None:intergenic 20.0%
!! CATTTATTAAGTAAAATGAC+AGG - chr7_2:19658575-19658594 Msa1051900:exon 20.0%
! GGTAAATTTGTGATCTTATT+AGG + chr7_2:19654020-19654039 None:intergenic 25.0%
! AATAAGATCACAAATTTACC+TGG - chr7_2:19654020-19654039 Msa1051900:three_prime_UTR 25.0%
!!! TTTGTTTCATGTTGTTTTGA+AGG - chr7_2:19654251-19654270 Msa1051900:intron 25.0%
!!! TTGTTTCATGTTGTTTTGAA+GGG - chr7_2:19654252-19654271 Msa1051900:intron 25.0%
! TCTATAAGGACTAAATACTT+GGG + chr7_2:19654728-19654747 None:intergenic 25.0%
! TTCTATAAGGACTAAATACT+TGG + chr7_2:19654729-19654748 None:intergenic 25.0%
! TCATTGAACAAAGTTTATGT+AGG - chr7_2:19654764-19654783 Msa1051900:intron 25.0%
! AAATGAAACCAACACATTAA+TGG + chr7_2:19654877-19654896 None:intergenic 25.0%
!! CTCAATTCTATTCTTTTGAA+TGG - chr7_2:19655089-19655108 Msa1051900:intron 25.0%
! ACATGACAGAATTTAGTAAA+AGG + chr7_2:19655205-19655224 None:intergenic 25.0%
! AAAACCAAGACAAATCTTTA+AGG + chr7_2:19655349-19655368 None:intergenic 25.0%
! TATGTGAGAGAATACTATAA+CGG - chr7_2:19656309-19656328 Msa1051900:intron 25.0%
! AGAAGATATACAAACATCAA+GGG + chr7_2:19656415-19656434 None:intergenic 25.0%
! ACAAATTCTACATTGAAATC+TGG - chr7_2:19657164-19657183 Msa1051900:intron 25.0%
!!! AACATAATTGCTTGTTTTAG+TGG - chr7_2:19657500-19657519 Msa1051900:CDS 25.0%
!!! AATAGGTTGAAAACATCTTT+TGG + chr7_2:19657641-19657660 None:intergenic 25.0%
! TTAAATTTACATCTGGACTA+AGG + chr7_2:19657853-19657872 None:intergenic 25.0%
!!! TTGAAAAATTTGTTTTGCAG+TGG - chr7_2:19657941-19657960 Msa1051900:intron 25.0%
! TAGAACTTTAGTACATCAAT+TGG - chr7_2:19657997-19658016 Msa1051900:intron 25.0%
! AACACTAATCAAAATTCTTC+TGG + chr7_2:19658401-19658420 None:intergenic 25.0%
!! GAGAAGATTTGATTTAACAA+GGG + chr7_2:19658426-19658445 None:intergenic 25.0%
!! TGAGAAGATTTGATTTAACA+AGG + chr7_2:19658427-19658446 None:intergenic 25.0%
AACTGATGAAAATCAACATG+TGG + chr7_2:19654050-19654069 None:intergenic 30.0%
!! GTTGATTTTCATCAGTTTTC+AGG - chr7_2:19654053-19654072 Msa1051900:three_prime_UTR 30.0%
!!! TTTCCAAACCTCTTGTTTTT+TGG - chr7_2:19654147-19654166 Msa1051900:CDS 30.0%
! TTGGTGCATTTTCAGAAAAT+GGG - chr7_2:19654297-19654316 Msa1051900:intron 30.0%
! AAGTGTCTGTAAATTTTGTC+TGG - chr7_2:19654439-19654458 Msa1051900:CDS 30.0%
AGACTGTTTGGAAGAATTTA+TGG - chr7_2:19654506-19654525 Msa1051900:CDS 30.0%
AACTTTATGGAAACGACTTA+TGG + chr7_2:19654550-19654569 None:intergenic 30.0%
! GTGTCTATTTTGCTTCTATA+AGG + chr7_2:19654742-19654761 None:intergenic 30.0%
TCCAATTTCCATTAATGTGT+TGG - chr7_2:19654866-19654885 Msa1051900:intron 30.0%
ACCAACACATTAATGGAAAT+TGG + chr7_2:19654870-19654889 None:intergenic 30.0%
CAATTCACATTTACACACAA+TGG + chr7_2:19654926-19654945 None:intergenic 30.0%
TAAGAAAATCCTACTCCAAT+TGG + chr7_2:19654978-19654997 None:intergenic 30.0%
! AGTAGGATTTTCTTATTCGA+CGG - chr7_2:19654983-19655002 Msa1051900:intron 30.0%
! ATGCAAAACTTTAGGAGAAA+GGG + chr7_2:19655228-19655247 None:intergenic 30.0%
! TATGCAAAACTTTAGGAGAA+AGG + chr7_2:19655229-19655248 None:intergenic 30.0%
AAAACAACACTATTATGCAG+TGG + chr7_2:19655306-19655325 None:intergenic 30.0%
TGTACCTTAAAGATTTGTCT+TGG - chr7_2:19655342-19655361 Msa1051900:intron 30.0%
ATCTAATCTTCTTGCAAAAC+TGG - chr7_2:19655407-19655426 Msa1051900:intron 30.0%
TATGCTCCAATTCAACAAAA+AGG - chr7_2:19655801-19655820 Msa1051900:intron 30.0%
! ACTTCTCCTTTTTGTTGAAT+TGG + chr7_2:19655810-19655829 None:intergenic 30.0%
! CATCACCTTTTTCTTTATGT+TGG - chr7_2:19655914-19655933 Msa1051900:intron 30.0%
ATAAACCAGAAAGAAAAAGC+TGG + chr7_2:19655942-19655961 None:intergenic 30.0%
CTCATTACACTTGAACAAAT+GGG + chr7_2:19656345-19656364 None:intergenic 30.0%
!! TACTTGTTTCTGTACTAACT+TGG + chr7_2:19656368-19656387 None:intergenic 30.0%
CAGAAGATATACAAACATCA+AGG + chr7_2:19656416-19656435 None:intergenic 30.0%
!! CAATCAAGTTTAAAGTACTG+AGG - chr7_2:19656701-19656720 Msa1051900:CDS 30.0%
AGACTGTCAATTATCTTAAC+AGG - chr7_2:19656803-19656822 Msa1051900:intron 30.0%
CAGCAATAAGGTTTAAATTG+AGG + chr7_2:19657019-19657038 None:intergenic 30.0%
!! AAGTAACTTGTGACTTTTAC+TGG - chr7_2:19657539-19657558 Msa1051900:CDS 30.0%
TTTCACAAACTATTCTTCTG+AGG + chr7_2:19657565-19657584 None:intergenic 30.0%
! AAAGTCAAAGGATTTTCATG+AGG + chr7_2:19657706-19657725 None:intergenic 30.0%
CATAAGCGCTTATCATATAA+GGG + chr7_2:19657765-19657784 None:intergenic 30.0%
ACATAAGCGCTTATCATATA+AGG + chr7_2:19657766-19657785 None:intergenic 30.0%
TATATGTAGACAACTAGACA+TGG + chr7_2:19657899-19657918 None:intergenic 30.0%
!!! ATAATCTCGCTCTTATTTTC+AGG - chr7_2:19658241-19658260 Msa1051900:intron 30.0%
TACTATCATTTGCAACAGTT+AGG - chr7_2:19658294-19658313 Msa1051900:intron 30.0%
ACTATCATTTGCAACAGTTA+GGG - chr7_2:19658295-19658314 Msa1051900:intron 30.0%
CTGTTTAAGTCTTTCTTAGA+AGG - chr7_2:19658365-19658384 Msa1051900:CDS 30.0%
AATCAAAATTCTTCTGGTAG+AGG + chr7_2:19658395-19658414 None:intergenic 30.0%
! TTTTGTAAAGTTCTCAAGCA+AGG - chr7_2:19658464-19658483 Msa1051900:CDS 30.0%
AAATGTAACATAACAGGGAA+AGG + chr7_2:19658520-19658539 None:intergenic 30.0%
ACAACAAAGTAGAGAAGACA+TGG + chr7_2:19653937-19653956 None:intergenic 35.0%
! GTTGGTGCATTTTCAGAAAA+TGG - chr7_2:19654296-19654315 Msa1051900:intron 35.0%
TTTCAGAAAATGGGCCATTT+AGG - chr7_2:19654306-19654325 Msa1051900:intron 35.0%
AGTCGTTTCCATAAAGTTCT+CGG - chr7_2:19654552-19654571 Msa1051900:intron 35.0%
TGTGTAAATGTGAATTGCAG+AGG - chr7_2:19654929-19654948 Msa1051900:intron 35.0%
AGAGGCAAATATGTTGTACT+TGG - chr7_2:19654947-19654966 Msa1051900:intron 35.0%
TTGTACTTGGAATCACCAAT+TGG - chr7_2:19654960-19654979 Msa1051900:intron 35.0%
ACGGATACTTCAACTTATGA+AGG - chr7_2:19655002-19655021 Msa1051900:intron 35.0%
GGTGTAAATGACAAGATTAC+AGG - chr7_2:19655023-19655042 Msa1051900:intron 35.0%
TTGTCTTTCTCTTTATAGCC+AGG - chr7_2:19655380-19655399 Msa1051900:intron 35.0%
TGTCTTTCTCTTTATAGCCA+GGG - chr7_2:19655381-19655400 Msa1051900:intron 35.0%
CAAGAAGATTAGATTATCCC+TGG + chr7_2:19655401-19655420 None:intergenic 35.0%
!! AGCTTCTGTTTCTGTATTCA+GGG + chr7_2:19655444-19655463 None:intergenic 35.0%
!! AAGCTTCTGTTTCTGTATTC+AGG + chr7_2:19655445-19655464 None:intergenic 35.0%
GGGACTAAATTGATGCAAAT+TGG + chr7_2:19655525-19655544 None:intergenic 35.0%
AATGTCGAAGACACGTTTAA+AGG - chr7_2:19655617-19655636 Msa1051900:intron 35.0%
AGGTCATTATGTTCCTCAAT+TGG - chr7_2:19655771-19655790 Msa1051900:intron 35.0%
TTCTTATTCTTGCTAGTGCT+AGG - chr7_2:19655888-19655907 Msa1051900:intron 35.0%
TGGCACCAACATAAAGAAAA+AGG + chr7_2:19655922-19655941 None:intergenic 35.0%
ATTTAGATCGAAGTCATGTC+CGG - chr7_2:19655997-19656016 Msa1051900:intron 35.0%
ATATTGACATGTGTGACATG+CGG - chr7_2:19656049-19656068 Msa1051900:CDS 35.0%
!! TCTGTTGCAAATTCTAGAAC+TGG + chr7_2:19656198-19656217 None:intergenic 35.0%
! ATTCAAGAGCTGAGTTCTTT+TGG - chr7_2:19656223-19656242 Msa1051900:CDS 35.0%
ACTTGAACAAATGGGAGAAA+CGG + chr7_2:19656337-19656356 None:intergenic 35.0%
GCTCATTACACTTGAACAAA+TGG + chr7_2:19656346-19656365 None:intergenic 35.0%
! ATAAACTCACCTGAGTATTG+AGG + chr7_2:19656458-19656477 None:intergenic 35.0%
TACTCAGGTGAGTTTATCAT+CGG - chr7_2:19656461-19656480 Msa1051900:intron 35.0%
CAAATAGCAAGTGACTGAAA+CGG - chr7_2:19656759-19656778 Msa1051900:intron 35.0%
ATCTGATTGGAGTACATAGA+TGG - chr7_2:19656854-19656873 Msa1051900:intron 35.0%
CAATTCAAATTCAAGAGGCA+AGG + chr7_2:19657044-19657063 None:intergenic 35.0%
CTTTATGTCAATCAGTGTGT+TGG - chr7_2:19657314-19657333 Msa1051900:intron 35.0%
!!! TAATTGCTTGTTTTAGTGGC+TGG - chr7_2:19657504-19657523 Msa1051900:CDS 35.0%
ATTGGAGAGCTCATGAAAAT+AGG + chr7_2:19657658-19657677 None:intergenic 35.0%
GATTCAGTTATTCCATTGAC+TGG - chr7_2:19657971-19657990 Msa1051900:intron 35.0%
AAAGTTCTACTTCCAGTCAA+TGG + chr7_2:19657986-19658005 None:intergenic 35.0%
CAATATCAACAAAGCACGAT+AGG + chr7_2:19658088-19658107 None:intergenic 35.0%
GGGCATTTAACTATATGTGT+CGG + chr7_2:19658138-19658157 None:intergenic 35.0%
CTATCATTTGCAACAGTTAG+GGG - chr7_2:19658296-19658315 Msa1051900:intron 35.0%
ATTAGGGTGTGAAACTGCAA+AGG + chr7_2:19654003-19654022 None:intergenic 40.0%
AAATCAACATGTGGTTGACC+AGG + chr7_2:19654041-19654060 None:intergenic 40.0%
GAGCCAAAAAACAAGAGGTT+TGG + chr7_2:19654153-19654172 None:intergenic 40.0%
CCATTGAGCCAAAAAACAAG+AGG + chr7_2:19654158-19654177 None:intergenic 40.0%
!!! CCTCTTGTTTTTTGGCTCAA+TGG - chr7_2:19654155-19654174 Msa1051900:CDS 40.0%
!!! CTTGTTTTTTGGCTCAATGG+AGG - chr7_2:19654158-19654177 Msa1051900:CDS 40.0%
CTAACCAAAGCTTCTCCTTT+AGG + chr7_2:19654332-19654351 None:intergenic 40.0%
! CTAAAGGAGAAGCTTTGGTT+AGG - chr7_2:19654330-19654349 Msa1051900:intron 40.0%
AGCTATCTCCGAGAACTTTA+TGG + chr7_2:19654563-19654582 None:intergenic 40.0%
TTGGAATCACCAATTGGAGT+AGG - chr7_2:19654966-19654985 Msa1051900:intron 40.0%
! AACAGAAGCTTGTTCATCGT+AGG - chr7_2:19655454-19655473 Msa1051900:intron 40.0%
TCGACATTGTTACCAATGCA+GGG + chr7_2:19655605-19655624 None:intergenic 40.0%
TTCGACATTGTTACCAATGC+AGG + chr7_2:19655606-19655625 None:intergenic 40.0%
CACACATGTCAATATCGTGT+TGG + chr7_2:19656044-19656063 None:intergenic 40.0%
AACCAAAGTCCTCAATACTC+AGG - chr7_2:19656446-19656465 Msa1051900:intron 40.0%
GTTGATCGATCAAGATTGTG+CGG + chr7_2:19656635-19656654 None:intergenic 40.0%
CACCAATGTATCTGAATGCA+CGG - chr7_2:19656655-19656674 Msa1051900:intron 40.0%
ATCCGTGCATTCAGATACAT+TGG + chr7_2:19656660-19656679 None:intergenic 40.0%
GCTTTACATGCACATCTGAT+TGG - chr7_2:19656841-19656860 Msa1051900:intron 40.0%
AAAGAGAATTACCTGCTGCA+GGG + chr7_2:19656883-19656902 None:intergenic 40.0%
GCAGGCAATTCAAATTCAAG+AGG + chr7_2:19657049-19657068 None:intergenic 40.0%
TTGGTTATCGTTGGACTGTT+CGG + chr7_2:19657195-19657214 None:intergenic 40.0%
CTTGGAGATACCAACAATCA+CGG - chr7_2:19657353-19657372 Msa1051900:intron 40.0%
ATACCAACAATCACGGTTGT+CGG - chr7_2:19657360-19657379 Msa1051900:intron 40.0%
ACATACCTGTAGACCAAAAC+TGG + chr7_2:19657408-19657427 None:intergenic 40.0%
GGACTAAGGACCAAGTTTAA+TGG + chr7_2:19657839-19657858 None:intergenic 40.0%
!!! TTTGTTTTGCAGTGGTGATC+AGG - chr7_2:19657949-19657968 Msa1051900:intron 40.0%
!!! TCTCGCTCTTATTTTCAGGT+TGG - chr7_2:19658245-19658264 Msa1051900:intron 40.0%
!!! CTTATTTTCAGGTTGGTGGT+TGG - chr7_2:19658252-19658271 Msa1051900:intron 40.0%
TGCAGCAACACACATTGCAA+TGG + chr7_2:19653961-19653980 None:intergenic 45.0%
!!! TCATGTTGTTTTGAAGGGCC+TGG - chr7_2:19654257-19654276 Msa1051900:intron 45.0%
ACACCAAGAGAAGAACAACC+AGG + chr7_2:19654278-19654297 None:intergenic 45.0%
! GGTTGTTCTTCTCTTGGTGT+TGG - chr7_2:19654278-19654297 Msa1051900:intron 45.0%
AATGGGCCATTTAGGCCTAA+AGG - chr7_2:19654314-19654333 Msa1051900:intron 45.0%
GCTTCTCCTTTAGGCCTAAA+TGG + chr7_2:19654323-19654342 None:intergenic 45.0%
TAGGCCTAAAGGAGAAGCTT+TGG - chr7_2:19654325-19654344 Msa1051900:intron 45.0%
CATTGTTACCAATGCAGGGA+CGG + chr7_2:19655601-19655620 None:intergenic 45.0%
AGCATAAGCTCAGCCAATTG+AGG + chr7_2:19655787-19655806 None:intergenic 45.0%
!! TGGTGCCAGCTTTTTCTTTC+TGG - chr7_2:19655934-19655953 Msa1051900:intron 45.0%
CACTGACACATGTTTGACAC+CGG + chr7_2:19656019-19656038 None:intergenic 45.0%
! GAGTTTGCTTTCATGCAGCT+TGG - chr7_2:19656168-19656187 Msa1051900:CDS 45.0%
! GCTGAGTTCTTTTGGTCTCA+TGG - chr7_2:19656231-19656250 Msa1051900:CDS 45.0%
!! CACCTGAGTATTGAGGACTT+TGG + chr7_2:19656451-19656470 None:intergenic 45.0%
GGTGAGTTTATCATCGGATC+TGG - chr7_2:19656467-19656486 Msa1051900:intron 45.0%
CGTGCATTCAGATACATTGG+TGG + chr7_2:19656657-19656676 None:intergenic 45.0%
CAAAGAGAATTACCTGCTGC+AGG + chr7_2:19656884-19656903 None:intergenic 45.0%
!! CATGGAATTGTGTTGACTGC+AGG + chr7_2:19657067-19657086 None:intergenic 45.0%
CACATCAGTGGTCGTTAGAT+TGG - chr7_2:19657094-19657113 Msa1051900:CDS 45.0%
TCCAACGATAACCAATGTGC+CGG - chr7_2:19657200-19657219 Msa1051900:intron 45.0%
GGATTATGAGTTGCGTGACT+TGG - chr7_2:19657335-19657354 Msa1051900:intron 45.0%
!! GAGTTCCAGTTTTGGTCTAC+AGG - chr7_2:19657400-19657419 Msa1051900:intron 45.0%
TGAATACCACTGTGCCTTAC+AGG - chr7_2:19658035-19658054 Msa1051900:intron 45.0%
GAATACCACTGTGCCTTACA+GGG - chr7_2:19658036-19658055 Msa1051900:intron 45.0%
!! TATATGTGTCGGTGTCGTGT+AGG + chr7_2:19658127-19658146 None:intergenic 45.0%
!!! CGCTCTTATTTTCAGGTTGG+TGG - chr7_2:19658248-19658267 Msa1051900:intron 45.0%
GGTGGTTGGACTCAAGTTTA+TGG - chr7_2:19658266-19658285 Msa1051900:intron 45.0%
GATCTCTCAGGCTGTGAAAA+GGG + chr7_2:19658338-19658357 None:intergenic 45.0%
!!! TTAATCTTTTTATTATATTA+TGG - chr7_2:19654840-19654859 Msa1051900:intron 5.0%
TGGTTAGGAACCAGTTCAGC+TGG - chr7_2:19654345-19654364 Msa1051900:intron 50.0%
AACCAGTTCAGCTGGAACAC+AGG - chr7_2:19654353-19654372 Msa1051900:intron 50.0%
! GAAGCGCTTGTGAGACTGTT+TGG - chr7_2:19654494-19654513 Msa1051900:CDS 50.0%
ATCGTAGGAGAGAGCTATGC+CGG - chr7_2:19655469-19655488 Msa1051900:intron 50.0%
! AATGCAGGGACGGACTTGAT+TGG + chr7_2:19655591-19655610 None:intergenic 50.0%
AATCAAGTCCGTCCCTGCAT+TGG - chr7_2:19655590-19655609 Msa1051900:intron 50.0%
! CGGTGTCAAACATGTGTCAG+TGG - chr7_2:19656017-19656036 Msa1051900:intron 50.0%
AGAGGCAAGGCACAGCAATA+AGG + chr7_2:19657031-19657050 None:intergenic 50.0%
TTGCCGACAACCGTGATTGT+TGG + chr7_2:19657366-19657385 None:intergenic 50.0%
! CAAGGCAGGAGTTCCAGTTT+TGG - chr7_2:19657392-19657411 Msa1051900:intron 50.0%
GCACGATAGGATTCACCTGT+TGG + chr7_2:19658075-19658094 None:intergenic 50.0%
CGATCTCTCAGGCTGTGAAA+AGG + chr7_2:19658339-19658358 None:intergenic 50.0%
AACAGCACAAGCGATCTCTC+AGG + chr7_2:19658350-19658369 None:intergenic 50.0%
GGGCCTGGTTGTTCTTCTCT+TGG - chr7_2:19654272-19654291 Msa1051900:intron 55.0%
CACCTGTGTTCCAGCTGAAC+TGG + chr7_2:19654358-19654377 None:intergenic 55.0%
TGCCTGACTGCATGCAGTCA+CGG + chr7_2:19656512-19656531 None:intergenic 55.0%
CTGCATGCAGTCAGGCACAT+TGG - chr7_2:19656515-19656534 Msa1051900:intron 55.0%
CATGCAGTCAGGCACATTGG+CGG - chr7_2:19656518-19656537 Msa1051900:intron 55.0%
ATAGATGGTCTCCCTGCAGC+AGG - chr7_2:19656869-19656888 Msa1051900:intron 55.0%
GAGGTGTGCAACTGCGATTC+TGG + chr7_2:19657000-19657019 None:intergenic 55.0%
!! CCACTGATGTGCTGACTGCA+TGG + chr7_2:19657085-19657104 None:intergenic 55.0%
CCATGCAGTCAGCACATCAG+TGG - chr7_2:19657082-19657101 Msa1051900:CDS 55.0%
! GCCGGCACATTGGTTATCGT+TGG + chr7_2:19657204-19657223 None:intergenic 55.0%
CATTCACACAGCCGGCACAT+TGG + chr7_2:19657214-19657233 None:intergenic 55.0%
! TGCCGGCTGTGTGAATGTGT+GGG - chr7_2:19657217-19657236 Msa1051900:intron 55.0%
CTCCCACACATTCACACAGC+CGG + chr7_2:19657222-19657241 None:intergenic 55.0%
GGTTGTCGGCAAGCTAGTCA+AGG - chr7_2:19657374-19657393 Msa1051900:intron 55.0%
CCTGCAAACCACACCCTGTA+AGG + chr7_2:19658052-19658071 None:intergenic 55.0%
! CCTTACAGGGTGTGGTTTGC+AGG - chr7_2:19658049-19658068 Msa1051900:intron 55.0%
!! GTCGGTGTCGTGTAGGACAT+TGG + chr7_2:19658120-19658139 None:intergenic 55.0%
TCCCGTGACTGCATGCAGTC+AGG - chr7_2:19656507-19656526 Msa1051900:intron 60.0%
GCCTGACTGCATGCAGTCAC+GGG + chr7_2:19656511-19656530 None:intergenic 60.0%
!! GTGCCGGCTGTGTGAATGTG+TGG - chr7_2:19657216-19657235 Msa1051900:intron 60.0%
GTCGGCAAGCTAGTCAAGGC+AGG - chr7_2:19657378-19657397 Msa1051900:intron 60.0%
CCACACCCTGTAAGGCACAG+TGG + chr7_2:19658044-19658063 None:intergenic 60.0%
CCACTGTGCCTTACAGGGTG+TGG - chr7_2:19658041-19658060 Msa1051900:intron 60.0%
! GGTGTGGTTTGCAGGCCAAC+AGG - chr7_2:19658057-19658076 Msa1051900:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 19653900 19658613 19653900 ID=Msa1051900;Name=Msa1051900
chr7_2 mRNA 19653900 19658613 19653900 ID=Msa1051900-mRNA-1;Parent=Msa1051900;Name=Msa1051900-mRNA-1;_AED=0.28;_eAED=0.28;_QI=36|1|1|1|1|1|10|201|460
chr7_2 exon 19653900 19654250 19653900 ID=Msa1051900-mRNA-1:exon:4335;Parent=Msa1051900-mRNA-1
chr7_2 exon 19654435 19654552 19654435 ID=Msa1051900-mRNA-1:exon:4334;Parent=Msa1051900-mRNA-1
chr7_2 exon 19655092 19655184 19655092 ID=Msa1051900-mRNA-1:exon:4333;Parent=Msa1051900-mRNA-1
chr7_2 exon 19655623 19655747 19655623 ID=Msa1051900-mRNA-1:exon:4332;Parent=Msa1051900-mRNA-1
chr7_2 exon 19656046 19656327 19656046 ID=Msa1051900-mRNA-1:exon:4331;Parent=Msa1051900-mRNA-1
chr7_2 exon 19656661 19656740 19656661 ID=Msa1051900-mRNA-1:exon:4330;Parent=Msa1051900-mRNA-1
chr7_2 exon 19657023 19657115 19657023 ID=Msa1051900-mRNA-1:exon:4329;Parent=Msa1051900-mRNA-1
chr7_2 exon 19657469 19657564 19657469 ID=Msa1051900-mRNA-1:exon:4328;Parent=Msa1051900-mRNA-1
chr7_2 exon 19658139 19658240 19658139 ID=Msa1051900-mRNA-1:exon:4327;Parent=Msa1051900-mRNA-1
chr7_2 exon 19658334 19658613 19658334 ID=Msa1051900-mRNA-1:exon:4326;Parent=Msa1051900-mRNA-1
chr7_2 five_prime_UTR 19658578 19658613 19658578 ID=Msa1051900-mRNA-1:five_prime_utr;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19658334 19658577 19658334 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19658139 19658240 19658139 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19657469 19657564 19657469 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19657023 19657115 19657023 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19656661 19656740 19656661 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19656046 19656327 19656046 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19655623 19655747 19655623 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19655092 19655184 19655092 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19654435 19654552 19654435 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 CDS 19654101 19654250 19654101 ID=Msa1051900-mRNA-1:cds;Parent=Msa1051900-mRNA-1
chr7_2 three_prime_UTR 19653900 19654100 19653900 ID=Msa1051900-mRNA-1:three_prime_utr;Parent=Msa1051900-mRNA-1
Gene Sequence

>Msa1051900

ATGTCTTCTCTACTTTGTTGTTCCATTGCAATGTGTGTTGCTGCAATTGTACTTCAACAATGTTCCTTTGCAGTTTCACACCCTAATAAGATCACAAATTTACCTGGTCAACCACATGTTGATTTTCATCAGTTTTCAGGCTATGTAAATGTTGATGATCAAAACAAAAAAGCACTGTTTTTCTACTTTGTTGAAGCTCAGAATGATGATGTTTCCAAACCTCTTGTTTTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCAGAAAATGGGCCATTTAGGCCTAAAGGAGAAGCTTTGGTTAGGAACCAGTTCAGCTGGAACACAGAGGCAAATATGTTGTACTTGGAATCACCAATTGGAGTAGGATTTTCTTATTCGACGGATACTTCAACTTATGAAGGTGTAAATGACAAGATTACAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTAAAGTTCCCTGAATACAGAAACAGAAGCTTGTTCATCGTAGGAGAGAGCTATGCCGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTTAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACAGACTTTAATTCAAGAGCTGAGTTCTTTTGGTCTCATGGATTGATCTCAGACTTAACATTTAAAATGTTCACTTCAGTTTGTAACTATTCAAGATATGTGAGAGAATACTATAACGGTGCCGTTTCTCCCATTTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCTGTGTTTTCACAAACCAAAGTCCTCAATACTCAGCAAGTGACTGAAACGGTTGATGTATGCGTTGAAGACGAGACTGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCTTTACATGCACATCTGATTGGAGTACATAGATGGTCTCCCTGCAGCAGTGTGTTGGATTATGAGTTGCGTGACTTGGAGATACCAACAATCACGGTTGTCGGCAAGCTAGTCAAGGCAGGAGTTCCAGTTTTGGTCTACAGTGGTGATCAGGATTCAGTTATTCCATTGACTGGAAGTAGAACTTTAGTACATCAATTGGCAAAACAGCTGAGAATGAATACCACTGTGCCTTACAGGGTGTGGTTTGCAGGCCAACAGGTTGGTGGTTGGACTCAAGTTTATGGCAACATACTATCATTTGCAACAGTTAGGGGAGCATCACATGAAGTACCCTTTTCACAGCCTGAGAGATCGCTTGTGCTGTTTAAGTCTTTCTTAGAAGGAAGACCTCTACCAGAAGAATTTTGA
Protein sequence

>Msa1051900

MSSLLCCSIAMCVAAIVLQQCSFAVSHPNKITNLPGQPHVDFHQFSGYVNVDDQNKKALFFYFVEAQNDDVSKPLVFWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNTEANMLYLESPIGVGFSYSTDTSTYEGVNDKITARDNLIFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNTQQVTETVDVCVEDETVNYLNRKDVQSALHAHLIGVHRWSPCSSVLDYELRDLEIPTITVVGKLVKAGVPVLVYSGDQDSVIPLTGSRTLVHQLAKQLRMNTTVPYRVWFAGQQVGGWTQVYGNILSFATVRGASHEVPFSQPERSLVLFKSFLEGRPLPEEF*