AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605740 MtrunA17_Chr4g0035161 92.426 713 40 3 1 703 1 709 0.0 1311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605740 AT2G16365.5 30.570 386 189 14 331 703 135 454 3.34e-26 112
Msa0605740 AT2G16365.2 30.570 386 189 14 331 703 135 454 3.34e-26 112
Msa0605740 AT2G16365.6 30.570 386 189 14 331 703 135 454 3.34e-26 112
Msa0605740 AT2G16365.4 30.570 386 189 14 331 703 135 454 6.57e-26 114
Msa0605740 AT2G16365.1 30.570 386 189 14 331 703 135 454 9.42e-26 113
Msa0605740 AT2G16365.3 30.570 386 189 14 331 703 135 454 9.42e-26 113
Msa0605740 AT4G34550.2 27.876 226 136 8 482 703 76 278 2.96e-11 65.5
Msa0605740 AT4G34550.1 27.876 226 136 8 482 703 76 278 2.96e-11 65.5

Find 193 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTTATCTCTTCAAATT+TGG 0.097275 4_2:+51802336 Msa0605740:three_prime_UTR
TCCATCTGAGCTTACGAAAA+AGG 0.210390 4_2:+51802113 Msa0605740:CDS
TACAAACCAGACTGCATTCT+TGG 0.228523 4_2:+51800322 Msa0605740:CDS
TCGTCGTTTGATAATACTTT+TGG 0.242119 4_2:-51801868 None:intergenic
AAGCACTTTCTATATTTATT+AGG 0.258674 4_2:+51802678 Msa0605740:three_prime_UTR
CATTGGTGATATGAAGTTTA+TGG 0.261268 4_2:+51802181 Msa0605740:three_prime_UTR
TGGAATCATTGAACCTATTA+TGG 0.292170 4_2:+51802505 Msa0605740:three_prime_UTR
TCATCATCATTACCAGCTAT+TGG 0.294330 4_2:-51800236 None:intergenic
ATGTAAAGTTATGATCCTTT+TGG 0.299353 4_2:+51802599 Msa0605740:three_prime_UTR
AAAATCTGGCAGTAGCTCTT+TGG 0.312890 4_2:+51801642 Msa0605740:CDS
ATTCTTCTGCTGAATCTATA+CGG 0.313873 4_2:-51800430 None:intergenic
CGAGGACCACGTTCTGCTTA+TGG 0.314497 4_2:+51800383 Msa0605740:CDS
CCTTTGTCACGTCCATTTGT+AGG 0.316437 4_2:-51800020 None:intergenic
AGTTAATTGTAAGGTTTGAT+AGG 0.318044 4_2:+51802570 Msa0605740:three_prime_UTR
TACTGTTTCGGCTTCCATAC+TGG 0.320879 4_2:-51801809 None:intergenic
TTGCTGCACCACTATATTGT+AGG 0.322775 4_2:-51802714 None:intergenic
ATGGCACCTACCAAAGTTAA+AGG 0.328798 4_2:+51800509 Msa0605740:CDS
AAGCTACTCATCTGCTTCTC+AGG 0.329459 4_2:-51800146 None:intergenic
CACTACCAGATATAAATAAA+AGG 0.339310 4_2:+51801503 Msa0605740:CDS
TTGAAAGAGCCAAGTTCTTC+AGG 0.340528 4_2:-51799953 None:intergenic
ATGTGTTGTCTGGGAAATAT+TGG 0.350543 4_2:-51800468 None:intergenic
ATATGGCTGCATACTTTGTA+TGG 0.356113 4_2:+51802237 Msa0605740:three_prime_UTR
AAGTTTATGGTGGGGATTCA+TGG 0.360414 4_2:+51802194 Msa0605740:three_prime_UTR
CGTTTAACCCATCTGCTACT+TGG 0.365771 4_2:-51801673 None:intergenic
TTCAGAGATGGAGTCATAAT+CGG 0.369850 4_2:+51801947 Msa0605740:CDS
TCAAGGGTCCAAGTGGGATA+TGG 0.372160 4_2:-51802292 None:intergenic
TCAGGAGATGACTCATTTGC+GGG 0.372611 4_2:-51800677 None:intergenic
AGTTCCATTGCTATCTAATA+AGG 0.373600 4_2:+51800989 Msa0605740:CDS
TTACATGAGAATAATCTTGC+AGG 0.380305 4_2:+51800725 Msa0605740:CDS
GAAATTATTTCCTTTAACTT+TGG 0.380860 4_2:-51800519 None:intergenic
AATTCATTGCCTTTCCCATC+AGG 0.381879 4_2:-51802083 None:intergenic
ATATTACACTTTCACATCCT+TGG 0.382045 4_2:+51801923 Msa0605740:CDS
TTGTTTATATAAAATTGATT+TGG 0.384133 4_2:+51802803 Msa0605740:three_prime_UTR
GACTCGAGCAGCACCATAAT+AGG 0.385330 4_2:-51802518 None:intergenic
GACTCATTTGCGGGGCTTGT+CGG 0.388559 4_2:-51800668 None:intergenic
ATGTCCATAGTGTTGGGTTC+AGG 0.389929 4_2:-51800695 None:intergenic
AAATCTGGCAGTAGCTCTTT+GGG 0.392253 4_2:+51801643 Msa0605740:CDS
CGTGAGGGAGATGGGAAATC+TGG 0.392743 4_2:+51799768 Msa0605740:CDS
TAATTTGTGAGGAATCTATA+TGG 0.394697 4_2:+51802220 Msa0605740:three_prime_UTR
TACAGCGTGATATACTGTTT+CGG 0.399396 4_2:-51801821 None:intergenic
CTCCCTAGAGTTTCCAGCTT+CGG 0.408155 4_2:-51800599 None:intergenic
GAAAGAGAGCAAATCCAGTA+TGG 0.411074 4_2:+51801795 Msa0605740:CDS
GCAGCTTGTGAAGATGTTAA+TGG 0.412528 4_2:-51799852 None:intergenic
TAGTGCCTGTGTAATGCTCT+TGG 0.415991 4_2:-51800094 None:intergenic
ATCTCCTGAACCCAACACTA+TGG 0.416006 4_2:+51800691 Msa0605740:CDS
AAAAGGGTCCTGTGATGGTT+TGG 0.417387 4_2:+51802130 Msa0605740:CDS
TGGTTTGAGTGTTGGTTGTA+AGG 0.419555 4_2:+51799536 Msa0605740:CDS
CACAATTTCGATTTGTTCGA+AGG 0.420744 4_2:+51798967 Msa0605740:five_prime_UTR
TAAAGAACTGATGTGTTGTC+TGG 0.422371 4_2:-51800478 None:intergenic
GGTACCAAGAGTGAAAATAT+TGG 0.428448 4_2:+51801727 Msa0605740:CDS
AAATCAACTTGTTTATAACT+AGG 0.429380 4_2:-51802769 None:intergenic
GTTTCCAAGCATTGCTGCCA+TGG 0.431782 4_2:+51802059 Msa0605740:CDS
ACTTTGTATGGGAAGTTACT+TGG 0.433712 4_2:+51802249 Msa0605740:three_prime_UTR
TGGCAAGTCCCATGGTTGAC+AGG 0.434405 4_2:+51801545 Msa0605740:CDS
TTTCTATATTTATTAGGACT+TGG 0.442561 4_2:+51802684 Msa0605740:three_prime_UTR
AAAATTGAAGAATGCAAGCT+TGG 0.443223 4_2:+51799662 Msa0605740:CDS
AGTGCCTGTGTAATGCTCTT+GGG 0.444076 4_2:-51800093 None:intergenic
TTGTATTCACTGACTTCTCC+AGG 0.445070 4_2:-51801480 None:intergenic
TTCCTTCGCTTCAGTAAAAG+AGG 0.446015 4_2:-51801893 None:intergenic
GCAGTCTGGTTTGTAATGTC+TGG 0.451647 4_2:-51800314 None:intergenic
TTGGTGAATTGAGTACTGCC+TGG 0.451997 4_2:+51802268 Msa0605740:three_prime_UTR
ATGCAGTTCAGCAACTTTCA+AGG 0.452365 4_2:+51802652 Msa0605740:three_prime_UTR
TCTGGAAAAGAATCAAGCTT+TGG 0.457478 4_2:+51799786 Msa0605740:CDS
CATGTTGATGAGGAGGAGAT+TGG 0.457977 4_2:+51799639 Msa0605740:CDS
TATTAACAGAGTTAATTGTA+AGG 0.462815 4_2:+51802561 Msa0605740:three_prime_UTR
TACTGTGGAATGTCCGAAGC+TGG 0.463281 4_2:+51800586 Msa0605740:CDS
GTTTATAACTAGGACACATT+CGG 0.463468 4_2:-51802759 None:intergenic
TTCACACTGTTCGAAGACTT+TGG 0.464664 4_2:-51802015 None:intergenic
TGTGTTGTCTGGGAAATATT+GGG 0.465382 4_2:-51800467 None:intergenic
AATAGAAACTTCGATAAAAG+AGG 0.468885 4_2:+51799881 Msa0605740:CDS
TTCAGGAGATGACTCATTTG+CGG 0.469714 4_2:-51800678 None:intergenic
CTGTTAATATATGCTTAGCT+TGG 0.476297 4_2:-51802547 None:intergenic
CAAAACACTGGTTTGAGTGT+TGG 0.476416 4_2:+51799528 Msa0605740:CDS
CAAGCTAAGCAACAAATTCA+AGG 0.477342 4_2:-51802309 None:intergenic
GAGCGAGTTCTGACTATCCT+TGG 0.477750 4_2:-51801419 None:intergenic
TCAGTTCTTTAGCGAATCAA+TGG 0.481154 4_2:+51800490 Msa0605740:CDS
TGCCTTTCCCATCAGGGCCA+TGG 0.481687 4_2:-51802076 None:intergenic
AGTTTATGGTGGGGATTCAT+GGG 0.481785 4_2:+51802195 Msa0605740:three_prime_UTR
TGTCACCATGGATGGCTCAT+TGG 0.481968 4_2:+51799478 Msa0605740:CDS
CACATCCTTGGATTCAGAGA+TGG 0.486570 4_2:+51801935 Msa0605740:CDS
GGACATGCAAGGTCAAAATC+TGG 0.489568 4_2:+51801628 Msa0605740:CDS
CATTGCTGCCATGGCCCTGA+TGG 0.489579 4_2:+51802068 Msa0605740:CDS
AACAAATTCAAGGGTCCAAG+TGG 0.489611 4_2:-51802299 None:intergenic
AGTATCAATGTCCATAGTGT+TGG 0.489719 4_2:-51800702 None:intergenic
CCAAATTTGAAGAGATAAAG+TGG 0.491726 4_2:-51802336 None:intergenic
GGAAAAGAATCAAGCTTTGG+AGG 0.491856 4_2:+51799789 Msa0605740:CDS
AGGGCCATGGCAGCAATGCT+TGG 0.495199 4_2:-51802063 None:intergenic
TCAGACATAGTGCCTACAAA+TGG 0.495845 4_2:+51800008 Msa0605740:CDS
TGTCCGAAGCTGGAAACTCT+AGG 0.496175 4_2:+51800596 Msa0605740:CDS
TGCTGCTGACCTGAAGAACT+TGG 0.504230 4_2:+51799944 Msa0605740:CDS
GCCTCATGAGCTTCTCACTC+TGG 0.509485 4_2:+51801525 Msa0605740:CDS
GTCCAAGTGGGATATGGCCC+AGG 0.509913 4_2:-51802286 None:intergenic
TTGACTCCAAGAATGCAGTC+TGG 0.511680 4_2:-51800328 None:intergenic
TAAATGCAGCTCTACTCAGT+TGG 0.517872 4_2:-51802370 None:intergenic
GTATCAATGTCCATAGTGTT+GGG 0.518759 4_2:-51800701 None:intergenic
GTTGAGAAGCGTGATTTACT+TGG 0.519899 4_2:+51799585 Msa0605740:CDS
TGCCTGGGCCATATCCCACT+TGG 0.520800 4_2:+51802284 Msa0605740:three_prime_UTR
TTCCCGCATAATCCAATAGC+TGG 0.522707 4_2:+51800224 Msa0605740:CDS
AACGTCATTGCGGAACAACT+TGG 0.522885 4_2:+51799974 Msa0605740:CDS
GATGCTCACCTACAATATAG+TGG 0.527401 4_2:+51802706 Msa0605740:three_prime_UTR
ACATTACGGTGTAAGCTCTT+CGG 0.529472 4_2:+51800358 Msa0605740:CDS
TAGTTATCTGTCACCATGGA+TGG 0.529769 4_2:+51799470 Msa0605740:CDS
TTCTTCTGCTGAATCTATAC+GGG 0.530303 4_2:-51800429 None:intergenic
TTCGTATTCCAAACCATCAC+AGG 0.531285 4_2:-51802138 None:intergenic
TTATTTCCTTTAACTTTGGT+AGG 0.531301 4_2:-51800515 None:intergenic
GAGTCAACTAAACCACATTA+CGG 0.531761 4_2:+51800344 Msa0605740:CDS
TTACTTGGTGGGTCGGACGT+TGG 0.535071 4_2:+51799600 Msa0605740:CDS
TCTCACTCTGGCAAGTCCCA+TGG 0.538395 4_2:+51801537 Msa0605740:CDS
TCAGAGATGGAGTCATAATC+GGG 0.539217 4_2:+51801948 Msa0605740:CDS
AAAGTGGTCTGTGTTGTTGT+GGG 0.547475 4_2:+51799377 Msa0605740:five_prime_UTR
TACCAGCTATTGGATTATGC+GGG 0.549442 4_2:-51800226 None:intergenic
CTCGATCCACCGGTGAGTTG+AGG 0.550932 4_2:-51800056 None:intergenic
ACACGAGCAGCAATCTCATC+CGG 0.551481 4_2:-51799423 None:intergenic
AAAAGTGGTCTGTGTTGTTG+TGG 0.551828 4_2:+51799376 Msa0605740:five_prime_UTR
TTCTTCTCTTCTCTCTGCAA+AGG 0.552529 4_2:-51799738 None:intergenic
ATTCATTGCCTTTCCCATCA+GGG 0.553766 4_2:-51802082 None:intergenic
AGAAGATTTCTGAAGAGGCA+TGG 0.557190 4_2:+51802485 Msa0605740:three_prime_UTR
GTTATAGTTATCTGTCACCA+TGG 0.560238 4_2:+51799466 Msa0605740:CDS
ATTACCTTATTAGATAGCAA+TGG 0.564874 4_2:-51800993 None:intergenic
AAGTTATGCACATTGGACTC+TGG 0.565570 4_2:+51801700 Msa0605740:CDS
GGCAAGTCCCATGGTTGACA+GGG 0.566145 4_2:+51801546 Msa0605740:CDS
GAGAAGCGTGATTTACTTGG+TGG 0.567599 4_2:+51799588 Msa0605740:CDS
AGAAGCGTGATTTACTTGGT+GGG 0.568090 4_2:+51799589 Msa0605740:CDS
TCCCGTTCAAAATTGTTGCA+AGG 0.569144 4_2:+51800188 Msa0605740:CDS
TGACTCCATCTCTGAATCCA+AGG 0.570038 4_2:-51801940 None:intergenic
TTCAATGCATGTTGATGAGG+AGG 0.570083 4_2:+51799632 Msa0605740:CDS
TGCACATTGGACTCTGGTCA+TGG 0.570460 4_2:+51801706 Msa0605740:CDS
GTGTATTGCGATGGCGAGAG+AGG 0.570917 4_2:+51799444 Msa0605740:CDS
CAGAACTCGCTCTCAACTCA+AGG 0.571110 4_2:+51801430 Msa0605740:CDS
TTACCAGCTATTGGATTATG+CGG 0.571389 4_2:-51800227 None:intergenic
TATGGCTGCATACTTTGTAT+GGG 0.571910 4_2:+51802238 Msa0605740:three_prime_UTR
ATAGAAACTTCGATAAAAGA+GGG 0.572146 4_2:+51799882 Msa0605740:CDS
TGCCATGGCCCTGATGGGAA+AGG 0.574061 4_2:+51802074 Msa0605740:CDS
ACGTTCTGCTTATGGTGTGA+AGG 0.574123 4_2:+51800391 Msa0605740:CDS
CTAGTCTCCCTGTCAACCAT+GGG 0.575414 4_2:-51801553 None:intergenic
CGGTCACTAGCGGGTGGAGT+CGG 0.577522 4_2:-51800563 None:intergenic
ATGGAAGAAGATTTCTGAAG+AGG 0.577773 4_2:+51802480 Msa0605740:three_prime_UTR
GATCAGATCCAAGTAGCAGA+TGG 0.578350 4_2:+51801665 Msa0605740:CDS
CTTCAGGTCAGCAGCACACA+AGG 0.579062 4_2:-51799937 None:intergenic
GCCAGAGTGAGAAGCTCATG+AGG 0.579520 4_2:-51801526 None:intergenic
TAGTTCAATGCATGTTGATG+AGG 0.582033 4_2:+51799629 Msa0605740:CDS
TCTGTGATGCCTCAACTCAC+CGG 0.582317 4_2:+51800047 Msa0605740:CDS
AGCTACTCATCTGCTTCTCA+GGG 0.583089 4_2:-51800145 None:intergenic
GCGTGATTTACTTGGTGGGT+CGG 0.583135 4_2:+51799593 Msa0605740:CDS
GTCCGAAGCTGGAAACTCTA+GGG 0.584314 4_2:+51800597 Msa0605740:CDS
GTTATTGTCTCAAGGAGTGC+CGG 0.586151 4_2:+51799908 Msa0605740:CDS
GAAGAGCTTACACCGTAATG+TGG 0.586677 4_2:-51800356 None:intergenic
TCCACAGTACGGTCACTAGC+GGG 0.587185 4_2:-51800572 None:intergenic
ATAGCTGGTAATGATGATGA+TGG 0.589965 4_2:+51800239 Msa0605740:CDS
ACGACTCAAGTTATGCACAT+TGG 0.591694 4_2:+51801693 Msa0605740:CDS
ACGTGATATAAGAAATGACT+TGG 0.591964 4_2:-51799688 None:intergenic
CCTACAAATGGACGTGACAA+AGG 0.592739 4_2:+51800020 Msa0605740:CDS
TGAATTGTAGCTCGATCCAC+CGG 0.594904 4_2:-51800066 None:intergenic
GCAGCACACAAGGATTTCAC+CGG 0.598220 4_2:-51799927 None:intergenic
TGGTGAATTGAGTACTGCCT+GGG 0.599054 4_2:+51802269 Msa0605740:three_prime_UTR
ATTCTGTGAGGTCATAAAAG+TGG 0.601484 4_2:+51799361 Msa0605740:five_prime_UTR
AAAGAACTGATGTGTTGTCT+GGG 0.603862 4_2:-51800477 None:intergenic
ACTAGTCTCCCTGTCAACCA+TGG 0.606962 4_2:-51801554 None:intergenic
GGTGTAAGCTCTTCGGCGCG+AGG 0.607249 4_2:+51800365 Msa0605740:CDS
TGCTTCCAATGAGCCATCCA+TGG 0.607803 4_2:-51799483 None:intergenic
ATTCATGGGATTAATTTGTG+AGG 0.608233 4_2:+51802209 Msa0605740:three_prime_UTR
ATTGCTGCCATGGCCCTGAT+GGG 0.609352 4_2:+51802069 Msa0605740:CDS
GGTGCAACAATTTCAGCTAG+AGG 0.609715 4_2:+51801451 Msa0605740:CDS
TTGTCGGACATTTCAAATCG+TGG 0.609831 4_2:-51800652 None:intergenic
GAGGGTCGGTTATTGTCTCA+AGG 0.611516 4_2:+51799900 Msa0605740:CDS
ATCAGATCCAAGTAGCAGAT+GGG 0.612774 4_2:+51801666 Msa0605740:CDS
TGGCTCTTTCAACGTCATTG+CGG 0.616065 4_2:+51799964 Msa0605740:CDS
CGTTCTGCTTATGGTGTGAA+GGG 0.616183 4_2:+51800392 Msa0605740:CDS
ACCCGCTAGTGACCGTACTG+TGG 0.619376 4_2:+51800571 Msa0605740:CDS
AAACTTCGATAAAAGAGGGT+CGG 0.622925 4_2:+51799886 Msa0605740:CDS
AAGCTAAGCAACAAATTCAA+GGG 0.625637 4_2:-51802308 None:intergenic
TTCCACAGTACGGTCACTAG+CGG 0.627753 4_2:-51800573 None:intergenic
CAGGAGATGACTCATTTGCG+GGG 0.629645 4_2:-51800676 None:intergenic
GCTGCTCGTGTGTATTGCGA+TGG 0.632101 4_2:+51799435 Msa0605740:CDS
GCTTCGGACATTCCACAGTA+CGG 0.632713 4_2:-51800583 None:intergenic
CATAAACTTCATATCACCAA+TGG 0.633280 4_2:-51802180 None:intergenic
GTGATGCCTCAACTCACCGG+TGG 0.633690 4_2:+51800050 Msa0605740:CDS
GAAACAGTATATCACGCTGT+AGG 0.641479 4_2:+51801823 Msa0605740:CDS
GGTGATATGAAGTTTATGGT+GGG 0.641580 4_2:+51802185 Msa0605740:three_prime_UTR
TGGTGATATGAAGTTTATGG+TGG 0.642736 4_2:+51802184 Msa0605740:three_prime_UTR
CTTGCATGTCCGTTTACGTG+AGG 0.645651 4_2:-51801616 None:intergenic
CTCACGTAAACGGACATGCA+AGG 0.651317 4_2:+51801617 Msa0605740:CDS
TCATCTGCTTCTCAGGGACA+CGG 0.651975 4_2:-51800139 None:intergenic
ATTGGATTATGCGGGAAACG+AGG 0.661816 4_2:-51800218 None:intergenic
AAGCCAACGAAACAAAACAC+TGG 0.674007 4_2:+51799516 Msa0605740:CDS
ACAGTACGGTCACTAGCGGG+TGG 0.674398 4_2:-51800569 None:intergenic
AAGTGGTCTGTGTTGTTGTG+GGG 0.678906 4_2:+51799378 Msa0605740:five_prime_UTR
ACAAATTCAAGGGTCCAAGT+GGG 0.679968 4_2:-51802298 None:intergenic
GCATCCCAAGAGCATTACAC+AGG 0.684740 4_2:+51800089 Msa0605740:CDS
GTGATATGAAGTTTATGGTG+GGG 0.691259 4_2:+51802186 Msa0605740:three_prime_UTR
TTCACACCATAAGCAGAACG+TGG 0.741114 4_2:-51800389 None:intergenic
TCAGCAGAAGAATTATCACG+AGG 0.776016 4_2:+51800440 Msa0605740:CDS
AATGCGTTGACTATTCTGTG+AGG 0.802994 4_2:+51799349 Msa0605740:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTTATATAAAATTGATT+TGG + chr4_2:51802803-51802822 Msa0605740:three_prime_UTR 10.0%
!! ATTAAACTTAACTGAAATTA+TGG - chr4_2:51800867-51800886 None:intergenic 15.0%
!!! ATGATGTTAATTTTGTTTTT+TGG + chr4_2:51800931-51800950 Msa0605740:intron 15.0%
!!! ATATGATTTTCATTATTATC+TGG + chr4_2:51801084-51801103 Msa0605740:intron 15.0%
!!! AATAGTATTGGATTTAATAT+GGG - chr4_2:51801343-51801362 None:intergenic 15.0%
!!! CATTAGTTAATTGTGTTTTA+TGG - chr4_2:51799146-51799165 None:intergenic 20.0%
!!! TTTTTTTGCATGTATATGTT+AGG + chr4_2:51799232-51799251 Msa0605740:intron 20.0%
!!! TTTATCGAAGTTTCTATTTT+AGG - chr4_2:51799879-51799898 None:intergenic 20.0%
!!! CAATTAAATTTTGAATCTTG+TGG - chr4_2:51800289-51800308 None:intergenic 20.0%
!!! GAAATTATTTCCTTTAACTT+TGG - chr4_2:51800522-51800541 None:intergenic 20.0%
!!! TTAATCGTAGTTTTATTGTT+TGG + chr4_2:51800882-51800901 Msa0605740:intron 20.0%
!! ACACTTTATATATCATAATC+TGG + chr4_2:51801113-51801132 Msa0605740:intron 20.0%
!!! ATATATCATAATCTGGTTTT+TGG + chr4_2:51801120-51801139 Msa0605740:intron 20.0%
!!! TATATCATAATCTGGTTTTT+GGG + chr4_2:51801121-51801140 Msa0605740:intron 20.0%
!!! ATAGTATTGGATTTAATATG+GGG - chr4_2:51801342-51801361 None:intergenic 20.0%
!!! GAATAGTATTGGATTTAATA+TGG - chr4_2:51801344-51801363 None:intergenic 20.0%
!! TATTAACAGAGTTAATTGTA+AGG + chr4_2:51802561-51802580 Msa0605740:three_prime_UTR 20.0%
!! AAGCACTTTCTATATTTATT+AGG + chr4_2:51802678-51802697 Msa0605740:three_prime_UTR 20.0%
!! TTTCTATATTTATTAGGACT+TGG + chr4_2:51802684-51802703 Msa0605740:three_prime_UTR 20.0%
!!! AAATCAACTTGTTTATAACT+AGG - chr4_2:51802772-51802791 None:intergenic 20.0%
! ATTCATTCTCTTGAAAATTC+AGG + chr4_2:51799321-51799340 Msa0605740:intron 25.0%
! AATAGAAACTTCGATAAAAG+AGG + chr4_2:51799881-51799900 Msa0605740:CDS 25.0%
! ATAGAAACTTCGATAAAAGA+GGG + chr4_2:51799882-51799901 Msa0605740:CDS 25.0%
!! TTATTTCCTTTAACTTTGGT+AGG - chr4_2:51800518-51800537 None:intergenic 25.0%
!!! GCTTTAAGGATATCATTATA+TGG - chr4_2:51800778-51800797 None:intergenic 25.0%
! ATTGTTTGGAAAATGACATA+TGG + chr4_2:51800896-51800915 Msa0605740:intron 25.0%
!!! ATTTTGTTTTTTGGAACTGA+TGG + chr4_2:51800940-51800959 Msa0605740:intron 25.0%
! ATTACCTTATTAGATAGCAA+TGG - chr4_2:51800996-51801015 None:intergenic 25.0%
!! CTCAAAGTTTAGAATAGTAT+TGG - chr4_2:51801355-51801374 None:intergenic 25.0%
! ATACTATTCTAAACTTTGAG+CGG + chr4_2:51801355-51801374 Msa0605740:intron 25.0%
! CACTACCAGATATAAATAAA+AGG + chr4_2:51801503-51801522 Msa0605740:CDS 25.0%
!!! TTTGTTGATTTTACATGTGA+AGG - chr4_2:51801757-51801776 None:intergenic 25.0%
!! TAATTTGTGAGGAATCTATA+TGG + chr4_2:51802220-51802239 Msa0605740:three_prime_UTR 25.0%
! TAAATTGTCTTAATCCTAGA+TGG + chr4_2:51802461-51802480 Msa0605740:intron 25.0%
! AGTTAATTGTAAGGTTTGAT+AGG + chr4_2:51802570-51802589 Msa0605740:three_prime_UTR 25.0%
!! ATGTAAAGTTATGATCCTTT+TGG + chr4_2:51802599-51802618 Msa0605740:three_prime_UTR 25.0%
!! TGTAAAGTTATGATCCTTTT+GGG + chr4_2:51802600-51802619 Msa0605740:three_prime_UTR 25.0%
! TGCATGTGATTGTTTTCTAA+TGG + chr4_2:51799292-51799311 Msa0605740:intron 30.0%
! ATGTGATTGTTTTCTAATGG+AGG + chr4_2:51799295-51799314 Msa0605740:intron 30.0%
AAAATTGAAGAATGCAAGCT+TGG + chr4_2:51799662-51799681 Msa0605740:CDS 30.0%
ACGTGATATAAGAAATGACT+TGG - chr4_2:51799691-51799710 None:intergenic 30.0%
CGTCTTTCTCAAAACAAAAA+TGG + chr4_2:51799708-51799727 Msa0605740:CDS 30.0%
!!! GATACTGTTTTTATCAACAG+AGG + chr4_2:51799813-51799832 Msa0605740:CDS 30.0%
ATTCTTCTGCTGAATCTATA+CGG - chr4_2:51800433-51800452 None:intergenic 30.0%
TTACATGAGAATAATCTTGC+AGG + chr4_2:51800725-51800744 Msa0605740:CDS 30.0%
GTATATATGCACAAAGTGAA+AGG + chr4_2:51800747-51800766 Msa0605740:intron 30.0%
TTCTATATTGCAGAGCTTTA+AGG - chr4_2:51800792-51800811 None:intergenic 30.0%
AGTTCCATTGCTATCTAATA+AGG + chr4_2:51800989-51801008 Msa0605740:CDS 30.0%
! AAGGTAATTTTGCTCATGTT+TGG + chr4_2:51801008-51801027 Msa0605740:intron 30.0%
TCATATGAATGCTTAAGCAA+CGG - chr4_2:51801070-51801089 None:intergenic 30.0%
CAACACTCATCATAATTAAC+AGG - chr4_2:51801177-51801196 None:intergenic 30.0%
!! TGAGGCCTTTTATTTATATC+TGG - chr4_2:51801511-51801530 None:intergenic 30.0%
GAAAAAGTTGTTCAACATCA+AGG - chr4_2:51801597-51801616 None:intergenic 30.0%
! TTCTCCAATATTTTCACTCT+TGG - chr4_2:51801734-51801753 None:intergenic 30.0%
!! TCGTTTGATAATACTTTTGG+GGG - chr4_2:51801868-51801887 None:intergenic 30.0%
!! GTCGTTTGATAATACTTTTG+GGG - chr4_2:51801869-51801888 None:intergenic 30.0%
!! CGTCGTTTGATAATACTTTT+GGG - chr4_2:51801870-51801889 None:intergenic 30.0%
!! TCGTCGTTTGATAATACTTT+TGG - chr4_2:51801871-51801890 None:intergenic 30.0%
ATATTACACTTTCACATCCT+TGG + chr4_2:51801923-51801942 Msa0605740:CDS 30.0%
!! ACTGATTCATGCATCTTTTT+GGG - chr4_2:51801982-51802001 None:intergenic 30.0%
CATAAACTTCATATCACCAA+TGG - chr4_2:51802183-51802202 None:intergenic 30.0%
! CATTGGTGATATGAAGTTTA+TGG + chr4_2:51802181-51802200 Msa0605740:three_prime_UTR 30.0%
!! ATTCATGGGATTAATTTGTG+AGG + chr4_2:51802209-51802228 Msa0605740:three_prime_UTR 30.0%
AAGCTAAGCAACAAATTCAA+GGG - chr4_2:51802311-51802330 None:intergenic 30.0%
CCAAATTTGAAGAGATAAAG+TGG - chr4_2:51802339-51802358 None:intergenic 30.0%
CCACTTTATCTCTTCAAATT+TGG + chr4_2:51802336-51802355 Msa0605740:three_prime_UTR 30.0%
ATGCTATATGCAAAAAAAGC+AGG - chr4_2:51802423-51802442 None:intergenic 30.0%
TGGAATCATTGAACCTATTA+TGG + chr4_2:51802505-51802524 Msa0605740:three_prime_UTR 30.0%
CTGTTAATATATGCTTAGCT+TGG - chr4_2:51802550-51802569 None:intergenic 30.0%
! GTAAAGTTATGATCCTTTTG+GGG + chr4_2:51802601-51802620 Msa0605740:three_prime_UTR 30.0%
GTTTATAACTAGGACACATT+CGG - chr4_2:51802762-51802781 None:intergenic 30.0%
! CACAATTTCGATTTGTTCGA+AGG + chr4_2:51798967-51798986 Msa0605740:five_prime_UTR 35.0%
! CGATTTGTTCGAAGGTAAAT+TGG + chr4_2:51798975-51798994 Msa0605740:intron 35.0%
GCTAGTGATTTATGTGTGTT+AGG + chr4_2:51799181-51799200 Msa0605740:intron 35.0%
TATGTTAGGTAGTTGTGATC+TGG + chr4_2:51799246-51799265 Msa0605740:intron 35.0%
ATTCTGTGAGGTCATAAAAG+TGG + chr4_2:51799361-51799380 Msa0605740:five_prime_UTR 35.0%
GTTATAGTTATCTGTCACCA+TGG + chr4_2:51799466-51799485 Msa0605740:CDS 35.0%
!!! AAACCAGTGTTTTGTTTCGT+TGG - chr4_2:51799522-51799541 None:intergenic 35.0%
TAGTTCAATGCATGTTGATG+AGG + chr4_2:51799629-51799648 Msa0605740:CDS 35.0%
TCTGGAAAAGAATCAAGCTT+TGG + chr4_2:51799786-51799805 Msa0605740:CDS 35.0%
!!! ACTGTTTTTATCAACAGAGG+TGG + chr4_2:51799816-51799835 Msa0605740:CDS 35.0%
!!! CTGTTTTTATCAACAGAGGT+GGG + chr4_2:51799817-51799836 Msa0605740:CDS 35.0%
!! TGTTTTTATCAACAGAGGTG+GGG + chr4_2:51799818-51799837 Msa0605740:CDS 35.0%
AAACTTCGATAAAAGAGGGT+CGG + chr4_2:51799886-51799905 Msa0605740:CDS 35.0%
! TGCCTTGCAACAATTTTGAA+CGG - chr4_2:51800193-51800212 None:intergenic 35.0%
TTACCAGCTATTGGATTATG+CGG - chr4_2:51800230-51800249 None:intergenic 35.0%
TCATCATCATTACCAGCTAT+TGG - chr4_2:51800239-51800258 None:intergenic 35.0%
! ATAGCTGGTAATGATGATGA+TGG + chr4_2:51800239-51800258 Msa0605740:CDS 35.0%
GAGTCAACTAAACCACATTA+CGG + chr4_2:51800344-51800363 Msa0605740:CDS 35.0%
TTCTTCTGCTGAATCTATAC+GGG - chr4_2:51800432-51800451 None:intergenic 35.0%
TGTGTTGTCTGGGAAATATT+GGG - chr4_2:51800470-51800489 None:intergenic 35.0%
ATGTGTTGTCTGGGAAATAT+TGG - chr4_2:51800471-51800490 None:intergenic 35.0%
AAAGAACTGATGTGTTGTCT+GGG - chr4_2:51800480-51800499 None:intergenic 35.0%
TAAAGAACTGATGTGTTGTC+TGG - chr4_2:51800481-51800500 None:intergenic 35.0%
TCAGTTCTTTAGCGAATCAA+TGG + chr4_2:51800490-51800509 Msa0605740:CDS 35.0%
! TTCGTTTTCTTCACTCTTTC+TGG - chr4_2:51800627-51800646 None:intergenic 35.0%
GTATCAATGTCCATAGTGTT+GGG - chr4_2:51800704-51800723 None:intergenic 35.0%
AGTATCAATGTCCATAGTGT+TGG - chr4_2:51800705-51800724 None:intergenic 35.0%
AGGGTGGAAAATTAAATGCA+TGG - chr4_2:51801045-51801064 None:intergenic 35.0%
!! AAAGAGTTGGTATGAGGAAA+CGG - chr4_2:51801235-51801254 None:intergenic 35.0%
AATATGGGGTGATATGATAG+TGG - chr4_2:51801328-51801347 None:intergenic 35.0%
! TTAAATTTTGCAGTGCTCCA+AGG + chr4_2:51801402-51801421 Msa0605740:intron 35.0%
!! CAACTTTTTCCTCACGTAAA+CGG + chr4_2:51801607-51801626 Msa0605740:CDS 35.0%
GGTACCAAGAGTGAAAATAT+TGG + chr4_2:51801727-51801746 Msa0605740:CDS 35.0%
TACAGCGTGATATACTGTTT+CGG - chr4_2:51801824-51801843 None:intergenic 35.0%
!! TTTGATAATACTTTTGGGGG+TGG - chr4_2:51801865-51801884 None:intergenic 35.0%
TTCAGAGATGGAGTCATAAT+CGG + chr4_2:51801947-51801966 Msa0605740:CDS 35.0%
!!! CACTGATTCATGCATCTTTT+TGG - chr4_2:51801983-51802002 None:intergenic 35.0%
CAAAAAGATGCATGAATCAG+TGG + chr4_2:51801981-51802000 Msa0605740:CDS 35.0%
!!! CGAAGAGACTTTGAAGTTTT+TGG + chr4_2:51802157-51802176 Msa0605740:exon 35.0%
!!! ACTTTGAAGTTTTTGGCCAT+TGG + chr4_2:51802164-51802183 Msa0605740:exon 35.0%
TGGTGATATGAAGTTTATGG+TGG + chr4_2:51802184-51802203 Msa0605740:three_prime_UTR 35.0%
GGTGATATGAAGTTTATGGT+GGG + chr4_2:51802185-51802204 Msa0605740:three_prime_UTR 35.0%
GTGATATGAAGTTTATGGTG+GGG + chr4_2:51802186-51802205 Msa0605740:three_prime_UTR 35.0%
ATATGGCTGCATACTTTGTA+TGG + chr4_2:51802237-51802256 Msa0605740:three_prime_UTR 35.0%
TATGGCTGCATACTTTGTAT+GGG + chr4_2:51802238-51802257 Msa0605740:three_prime_UTR 35.0%
ACTTTGTATGGGAAGTTACT+TGG + chr4_2:51802249-51802268 Msa0605740:three_prime_UTR 35.0%
CAAGCTAAGCAACAAATTCA+AGG - chr4_2:51802312-51802331 None:intergenic 35.0%
TCAGAAATCTTCTTCCATCT+AGG - chr4_2:51802478-51802497 None:intergenic 35.0%
! ATGGAAGAAGATTTCTGAAG+AGG + chr4_2:51802480-51802499 Msa0605740:three_prime_UTR 35.0%
ATAGAAAAATCCACCCCAAA+AGG - chr4_2:51802617-51802636 None:intergenic 35.0%
!! AATGCGTTGACTATTCTGTG+AGG + chr4_2:51799349-51799368 Msa0605740:five_prime_UTR 40.0%
! AAAAGTGGTCTGTGTTGTTG+TGG + chr4_2:51799376-51799395 Msa0605740:five_prime_UTR 40.0%
! AAAGTGGTCTGTGTTGTTGT+GGG + chr4_2:51799377-51799396 Msa0605740:five_prime_UTR 40.0%
TGTTGTTGTGGGGAGAAAAA+AGG + chr4_2:51799388-51799407 Msa0605740:five_prime_UTR 40.0%
! AAAAAGGTGAGTGATGATGC+CGG + chr4_2:51799404-51799423 Msa0605740:exon 40.0%
TAGTTATCTGTCACCATGGA+TGG + chr4_2:51799470-51799489 Msa0605740:CDS 40.0%
AAGCCAACGAAACAAAACAC+TGG + chr4_2:51799516-51799535 Msa0605740:CDS 40.0%
!! CAAAACACTGGTTTGAGTGT+TGG + chr4_2:51799528-51799547 Msa0605740:CDS 40.0%
!! TGGTTTGAGTGTTGGTTGTA+AGG + chr4_2:51799536-51799555 Msa0605740:CDS 40.0%
! GTTGAGAAGCGTGATTTACT+TGG + chr4_2:51799585-51799604 Msa0605740:CDS 40.0%
! AGAAGCGTGATTTACTTGGT+GGG + chr4_2:51799589-51799608 Msa0605740:CDS 40.0%
! TTCAATGCATGTTGATGAGG+AGG + chr4_2:51799632-51799651 Msa0605740:CDS 40.0%
TTCTTCTCTTCTCTCTGCAA+AGG - chr4_2:51799741-51799760 None:intergenic 40.0%
! AGAGAAGAATGTTTTGCGTG+AGG + chr4_2:51799752-51799771 Msa0605740:CDS 40.0%
! GAGAAGAATGTTTTGCGTGA+GGG + chr4_2:51799753-51799772 Msa0605740:CDS 40.0%
! GGAAAAGAATCAAGCTTTGG+AGG + chr4_2:51799789-51799808 Msa0605740:CDS 40.0%
GCAGCTTGTGAAGATGTTAA+TGG - chr4_2:51799855-51799874 None:intergenic 40.0%
TTGAAAGAGCCAAGTTCTTC+AGG - chr4_2:51799956-51799975 None:intergenic 40.0%
TCAGACATAGTGCCTACAAA+TGG + chr4_2:51800008-51800027 Msa0605740:CDS 40.0%
! TGCAACAATTTTGAACGGGA+AGG - chr4_2:51800188-51800207 None:intergenic 40.0%
TCCCGTTCAAAATTGTTGCA+AGG + chr4_2:51800188-51800207 Msa0605740:CDS 40.0%
! GCCTTGCAACAATTTTGAAC+GGG - chr4_2:51800192-51800211 None:intergenic 40.0%
TACCAGCTATTGGATTATGC+GGG - chr4_2:51800229-51800248 None:intergenic 40.0%
TACAAACCAGACTGCATTCT+TGG + chr4_2:51800322-51800341 Msa0605740:CDS 40.0%
ACATTACGGTGTAAGCTCTT+CGG + chr4_2:51800358-51800377 Msa0605740:CDS 40.0%
TCAGCAGAAGAATTATCACG+AGG + chr4_2:51800440-51800459 Msa0605740:CDS 40.0%
ATGGCACCTACCAAAGTTAA+AGG + chr4_2:51800509-51800528 Msa0605740:CDS 40.0%
TTGTCGGACATTTCAAATCG+TGG - chr4_2:51800655-51800674 None:intergenic 40.0%
TTCAGGAGATGACTCATTTG+CGG - chr4_2:51800681-51800700 None:intergenic 40.0%
!! ACAACGAAAGAGTTGGTATG+AGG - chr4_2:51801241-51801260 None:intergenic 40.0%
TTCAGCTAGAGGAAAAAACC+TGG + chr4_2:51801462-51801481 Msa0605740:CDS 40.0%
!! TTGTATTCACTGACTTCTCC+AGG - chr4_2:51801483-51801502 None:intergenic 40.0%
AAAATCTGGCAGTAGCTCTT+TGG + chr4_2:51801642-51801661 Msa0605740:CDS 40.0%
AAATCTGGCAGTAGCTCTTT+GGG + chr4_2:51801643-51801662 Msa0605740:CDS 40.0%
ATCAGATCCAAGTAGCAGAT+GGG + chr4_2:51801666-51801685 Msa0605740:CDS 40.0%
ACGACTCAAGTTATGCACAT+TGG + chr4_2:51801693-51801712 Msa0605740:CDS 40.0%
AAGTTATGCACATTGGACTC+TGG + chr4_2:51801700-51801719 Msa0605740:CDS 40.0%
GAAAGAGAGCAAATCCAGTA+TGG + chr4_2:51801795-51801814 Msa0605740:CDS 40.0%
GAAACAGTATATCACGCTGT+AGG + chr4_2:51801823-51801842 Msa0605740:CDS 40.0%
TTCCTTCGCTTCAGTAAAAG+AGG - chr4_2:51801896-51801915 None:intergenic 40.0%
TCAGAGATGGAGTCATAATC+GGG + chr4_2:51801948-51801967 Msa0605740:CDS 40.0%
TTCACACTGTTCGAAGACTT+TGG - chr4_2:51802018-51802037 None:intergenic 40.0%
ATTCATTGCCTTTCCCATCA+GGG - chr4_2:51802085-51802104 None:intergenic 40.0%
AATTCATTGCCTTTCCCATC+AGG - chr4_2:51802086-51802105 None:intergenic 40.0%
TCCATCTGAGCTTACGAAAA+AGG + chr4_2:51802113-51802132 Msa0605740:CDS 40.0%
CCATCTGAGCTTACGAAAAA+GGG + chr4_2:51802114-51802133 Msa0605740:CDS 40.0%
TTCGTATTCCAAACCATCAC+AGG - chr4_2:51802141-51802160 None:intergenic 40.0%
! AAGTTTATGGTGGGGATTCA+TGG + chr4_2:51802194-51802213 Msa0605740:three_prime_UTR 40.0%
! AGTTTATGGTGGGGATTCAT+GGG + chr4_2:51802195-51802214 Msa0605740:three_prime_UTR 40.0%
ACAAATTCAAGGGTCCAAGT+GGG - chr4_2:51802301-51802320 None:intergenic 40.0%
AACAAATTCAAGGGTCCAAG+TGG - chr4_2:51802302-51802321 None:intergenic 40.0%
TAAATGCAGCTCTACTCAGT+TGG - chr4_2:51802373-51802392 None:intergenic 40.0%
! AGAAGATTTCTGAAGAGGCA+TGG + chr4_2:51802485-51802504 Msa0605740:three_prime_UTR 40.0%
!! AAGTTATGATCCTTTTGGGG+TGG + chr4_2:51802604-51802623 Msa0605740:three_prime_UTR 40.0%
ATGCAGTTCAGCAACTTTCA+AGG + chr4_2:51802652-51802671 Msa0605740:three_prime_UTR 40.0%
GATGCTCACCTACAATATAG+TGG + chr4_2:51802706-51802725 Msa0605740:three_prime_UTR 40.0%
TTGCTGCACCACTATATTGT+AGG - chr4_2:51802717-51802736 None:intergenic 40.0%
! AAGTGGTCTGTGTTGTTGTG+GGG + chr4_2:51799378-51799397 Msa0605740:five_prime_UTR 45.0%
! GAGAAGCGTGATTTACTTGG+TGG + chr4_2:51799588-51799607 Msa0605740:CDS 45.0%
! CATGTTGATGAGGAGGAGAT+TGG + chr4_2:51799639-51799658 Msa0605740:CDS 45.0%
! AATGTTTTGCGTGAGGGAGA+TGG + chr4_2:51799759-51799778 Msa0605740:CDS 45.0%
! ATGTTTTGCGTGAGGGAGAT+GGG + chr4_2:51799760-51799779 Msa0605740:CDS 45.0%
! GTTATTGTCTCAAGGAGTGC+CGG + chr4_2:51799908-51799927 Msa0605740:CDS 45.0%
TGGCTCTTTCAACGTCATTG+CGG + chr4_2:51799964-51799983 Msa0605740:CDS 45.0%
AACGTCATTGCGGAACAACT+TGG + chr4_2:51799974-51799993 Msa0605740:CDS 45.0%
CCTTTGTCACGTCCATTTGT+AGG - chr4_2:51800023-51800042 None:intergenic 45.0%
CCTACAAATGGACGTGACAA+AGG + chr4_2:51800020-51800039 Msa0605740:CDS 45.0%
TGAATTGTAGCTCGATCCAC+CGG - chr4_2:51800069-51800088 None:intergenic 45.0%
AGTGCCTGTGTAATGCTCTT+GGG - chr4_2:51800096-51800115 None:intergenic 45.0%
TAGTGCCTGTGTAATGCTCT+TGG - chr4_2:51800097-51800116 None:intergenic 45.0%
AGCTACTCATCTGCTTCTCA+GGG - chr4_2:51800148-51800167 None:intergenic 45.0%
AAGCTACTCATCTGCTTCTC+AGG - chr4_2:51800149-51800168 None:intergenic 45.0%
ATTGGATTATGCGGGAAACG+AGG - chr4_2:51800221-51800240 None:intergenic 45.0%
TTCCCGCATAATCCAATAGC+TGG + chr4_2:51800224-51800243 Msa0605740:CDS 45.0%
! GCAGTCTGGTTTGTAATGTC+TGG - chr4_2:51800317-51800336 None:intergenic 45.0%
TTGACTCCAAGAATGCAGTC+TGG - chr4_2:51800331-51800350 None:intergenic 45.0%
GAAGAGCTTACACCGTAATG+TGG - chr4_2:51800359-51800378 None:intergenic 45.0%
TTCACACCATAAGCAGAACG+TGG - chr4_2:51800392-51800411 None:intergenic 45.0%
ACGTTCTGCTTATGGTGTGA+AGG + chr4_2:51800391-51800410 Msa0605740:CDS 45.0%
CGTTCTGCTTATGGTGTGAA+GGG + chr4_2:51800392-51800411 Msa0605740:CDS 45.0%
TCAGGAGATGACTCATTTGC+GGG - chr4_2:51800680-51800699 None:intergenic 45.0%
ATCTCCTGAACCCAACACTA+TGG + chr4_2:51800691-51800710 Msa0605740:CDS 45.0%
! ATGTCCATAGTGTTGGGTTC+AGG - chr4_2:51800698-51800717 None:intergenic 45.0%
AATGGAACTACACCTGCAAC+AGG - chr4_2:51800978-51800997 None:intergenic 45.0%
GAATGCTTAAGCAACGGTGA+GGG - chr4_2:51801064-51801083 None:intergenic 45.0%
TGAATGCTTAAGCAACGGTG+AGG - chr4_2:51801065-51801084 None:intergenic 45.0%
GTGTGTGACAACGAAAGAGT+TGG - chr4_2:51801248-51801267 None:intergenic 45.0%
GAAAAACTCGTGCGATGATC+AGG - chr4_2:51801303-51801322 None:intergenic 45.0%
CTTTGAGCGGTAAACATGCA+TGG + chr4_2:51801368-51801387 Msa0605740:intron 45.0%
GGTGCAACAATTTCAGCTAG+AGG + chr4_2:51801451-51801470 Msa0605740:CDS 45.0%
GGACATGCAAGGTCAAAATC+TGG + chr4_2:51801628-51801647 Msa0605740:CDS 45.0%
GATCAGATCCAAGTAGCAGA+TGG + chr4_2:51801665-51801684 Msa0605740:CDS 45.0%
CGTTTAACCCATCTGCTACT+TGG - chr4_2:51801676-51801695 None:intergenic 45.0%
TACTGTTTCGGCTTCCATAC+TGG - chr4_2:51801812-51801831 None:intergenic 45.0%
!! AATACTTTTGGGGGTGGATC+TGG - chr4_2:51801859-51801878 None:intergenic 45.0%
! GTCCTCTTTTACTGAAGCGA+AGG + chr4_2:51801891-51801910 Msa0605740:CDS 45.0%
CACATCCTTGGATTCAGAGA+TGG + chr4_2:51801935-51801954 Msa0605740:CDS 45.0%
TGACTCCATCTCTGAATCCA+AGG - chr4_2:51801943-51801962 None:intergenic 45.0%
!! CCCTTTTTCGTAAGCTCAGA+TGG - chr4_2:51802117-51802136 None:intergenic 45.0%
TACGAAAAAGGGTCCTGTGA+TGG + chr4_2:51802125-51802144 Msa0605740:CDS 45.0%
AAAAGGGTCCTGTGATGGTT+TGG + chr4_2:51802130-51802149 Msa0605740:CDS 45.0%
! TTGGTGAATTGAGTACTGCC+TGG + chr4_2:51802268-51802287 Msa0605740:three_prime_UTR 45.0%
! TGGTGAATTGAGTACTGCCT+GGG + chr4_2:51802269-51802288 Msa0605740:three_prime_UTR 45.0%
ACACGAGCAGCAATCTCATC+CGG - chr4_2:51799426-51799445 None:intergenic 50.0%
TGTCACCATGGATGGCTCAT+TGG + chr4_2:51799478-51799497 Msa0605740:CDS 50.0%
TGCTTCCAATGAGCCATCCA+TGG - chr4_2:51799486-51799505 None:intergenic 50.0%
! GCGTGATTTACTTGGTGGGT+CGG + chr4_2:51799593-51799612 Msa0605740:CDS 50.0%
GAGGGTCGGTTATTGTCTCA+AGG + chr4_2:51799900-51799919 Msa0605740:CDS 50.0%
GCAGCACACAAGGATTTCAC+CGG - chr4_2:51799930-51799949 None:intergenic 50.0%
TGCTGCTGACCTGAAGAACT+TGG + chr4_2:51799944-51799963 Msa0605740:CDS 50.0%
TCTGTGATGCCTCAACTCAC+CGG + chr4_2:51800047-51800066 Msa0605740:CDS 50.0%
!! GCATCCCAAGAGCATTACAC+AGG + chr4_2:51800089-51800108 Msa0605740:CDS 50.0%
TCATCTGCTTCTCAGGGACA+CGG - chr4_2:51800142-51800161 None:intergenic 50.0%
TTCCACAGTACGGTCACTAG+CGG - chr4_2:51800576-51800595 None:intergenic 50.0%
GCTTCGGACATTCCACAGTA+CGG - chr4_2:51800586-51800605 None:intergenic 50.0%
TACTGTGGAATGTCCGAAGC+TGG + chr4_2:51800586-51800605 Msa0605740:CDS 50.0%
TGTCCGAAGCTGGAAACTCT+AGG + chr4_2:51800596-51800615 Msa0605740:CDS 50.0%
GTCCGAAGCTGGAAACTCTA+GGG + chr4_2:51800597-51800616 Msa0605740:CDS 50.0%
CTCCCTAGAGTTTCCAGCTT+CGG - chr4_2:51800602-51800621 None:intergenic 50.0%
CAGGAGATGACTCATTTGCG+GGG - chr4_2:51800679-51800698 None:intergenic 50.0%
! GAGCGAGTTCTGACTATCCT+TGG - chr4_2:51801422-51801441 None:intergenic 50.0%
CAGAACTCGCTCTCAACTCA+AGG + chr4_2:51801430-51801449 Msa0605740:CDS 50.0%
CTAGTCTCCCTGTCAACCAT+GGG - chr4_2:51801556-51801575 None:intergenic 50.0%
! ACTAGTCTCCCTGTCAACCA+TGG - chr4_2:51801557-51801576 None:intergenic 50.0%
CTTGCATGTCCGTTTACGTG+AGG - chr4_2:51801619-51801638 None:intergenic 50.0%
CTCACGTAAACGGACATGCA+AGG + chr4_2:51801617-51801636 Msa0605740:CDS 50.0%
TGCACATTGGACTCTGGTCA+TGG + chr4_2:51801706-51801725 Msa0605740:CDS 50.0%
! GTTTCCAAGCATTGCTGCCA+TGG + chr4_2:51802059-51802078 Msa0605740:CDS 50.0%
TCAAGGGTCCAAGTGGGATA+TGG - chr4_2:51802295-51802314 None:intergenic 50.0%
GACTCGAGCAGCACCATAAT+AGG - chr4_2:51802521-51802540 None:intergenic 50.0%
GCTGCTCGTGTGTATTGCGA+TGG + chr4_2:51799435-51799454 Msa0605740:CDS 55.0%
GTGTATTGCGATGGCGAGAG+AGG + chr4_2:51799444-51799463 Msa0605740:CDS 55.0%
! TTACTTGGTGGGTCGGACGT+TGG + chr4_2:51799600-51799619 Msa0605740:CDS 55.0%
CGTGAGGGAGATGGGAAATC+TGG + chr4_2:51799768-51799787 Msa0605740:CDS 55.0%
CTTCAGGTCAGCAGCACACA+AGG - chr4_2:51799940-51799959 None:intergenic 55.0%
CGAGGACCACGTTCTGCTTA+TGG + chr4_2:51800383-51800402 Msa0605740:CDS 55.0%
TCCACAGTACGGTCACTAGC+GGG - chr4_2:51800575-51800594 None:intergenic 55.0%
GACTCATTTGCGGGGCTTGT+CGG - chr4_2:51800671-51800690 None:intergenic 55.0%
TACACCTGCAACAGGCAGGA+AGG - chr4_2:51800970-51800989 None:intergenic 55.0%
GAACTACACCTGCAACAGGC+AGG - chr4_2:51800974-51800993 None:intergenic 55.0%
TGCTTAAGCAACGGTGAGGG+TGG - chr4_2:51801061-51801080 None:intergenic 55.0%
GCCTCATGAGCTTCTCACTC+TGG + chr4_2:51801525-51801544 Msa0605740:CDS 55.0%
GCCAGAGTGAGAAGCTCATG+AGG - chr4_2:51801529-51801548 None:intergenic 55.0%
TCTCACTCTGGCAAGTCCCA+TGG + chr4_2:51801537-51801556 Msa0605740:CDS 55.0%
TGGCAAGTCCCATGGTTGAC+AGG + chr4_2:51801545-51801564 Msa0605740:CDS 55.0%
GGCAAGTCCCATGGTTGACA+GGG + chr4_2:51801546-51801565 Msa0605740:CDS 55.0%
ATTGCTGCCATGGCCCTGAT+GGG + chr4_2:51802069-51802088 Msa0605740:CDS 55.0%
GTGATGCCTCAACTCACCGG+TGG + chr4_2:51800050-51800069 Msa0605740:CDS 60.0%
CTCGATCCACCGGTGAGTTG+AGG - chr4_2:51800059-51800078 None:intergenic 60.0%
ACAGTACGGTCACTAGCGGG+TGG - chr4_2:51800572-51800591 None:intergenic 60.0%
ACCCGCTAGTGACCGTACTG+TGG + chr4_2:51800571-51800590 Msa0605740:CDS 60.0%
TGCTCCTTCCTGCCTGTTGC+AGG + chr4_2:51800963-51800982 Msa0605740:intron 60.0%
AGGGCCATGGCAGCAATGCT+TGG - chr4_2:51802066-51802085 None:intergenic 60.0%
CATTGCTGCCATGGCCCTGA+TGG + chr4_2:51802068-51802087 Msa0605740:CDS 60.0%
TGCCATGGCCCTGATGGGAA+AGG + chr4_2:51802074-51802093 Msa0605740:CDS 60.0%
TGCCTTTCCCATCAGGGCCA+TGG - chr4_2:51802079-51802098 None:intergenic 60.0%
TGCCTGGGCCATATCCCACT+TGG + chr4_2:51802284-51802303 Msa0605740:three_prime_UTR 60.0%
GTCCAAGTGGGATATGGCCC+AGG - chr4_2:51802289-51802308 None:intergenic 60.0%
GGTGTAAGCTCTTCGGCGCG+AGG + chr4_2:51800365-51800384 Msa0605740:CDS 65.0%
! CGGTCACTAGCGGGTGGAGT+CGG - chr4_2:51800566-51800585 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 51798917 51802832 51798917 ID=Msa0605740;Name=Msa0605740
chr4_2 mRNA 51798917 51802832 51798917 ID=Msa0605740-mRNA-1;Parent=Msa0605740;Name=Msa0605740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=146|1|1|1|0.5|0.2|5|589|703
chr4_2 exon 51798917 51798988 51798917 ID=Msa0605740-mRNA-1:exon:12429;Parent=Msa0605740-mRNA-1
chr4_2 exon 51799343 51800746 51799343 ID=Msa0605740-mRNA-1:exon:12430;Parent=Msa0605740-mRNA-1
chr4_2 exon 51800985 51801010 51800985 ID=Msa0605740-mRNA-1:exon:12431;Parent=Msa0605740-mRNA-1
chr4_2 exon 51801415 51802406 51801415 ID=Msa0605740-mRNA-1:exon:12432;Parent=Msa0605740-mRNA-1
chr4_2 exon 51802480 51802832 51802480 ID=Msa0605740-mRNA-1:exon:12433;Parent=Msa0605740-mRNA-1
chr4_2 five_prime_UTR 51798917 51798988 51798917 ID=Msa0605740-mRNA-1:five_prime_utr;Parent=Msa0605740-mRNA-1
chr4_2 five_prime_UTR 51799343 51799416 51799343 ID=Msa0605740-mRNA-1:five_prime_utr;Parent=Msa0605740-mRNA-1
chr4_2 CDS 51799417 51800746 51799417 ID=Msa0605740-mRNA-1:cds;Parent=Msa0605740-mRNA-1
chr4_2 CDS 51800985 51801010 51800985 ID=Msa0605740-mRNA-1:cds;Parent=Msa0605740-mRNA-1
chr4_2 CDS 51801415 51802170 51801415 ID=Msa0605740-mRNA-1:cds;Parent=Msa0605740-mRNA-1
chr4_2 three_prime_UTR 51802171 51802406 51802171 ID=Msa0605740-mRNA-1:three_prime_utr;Parent=Msa0605740-mRNA-1
chr4_2 three_prime_UTR 51802480 51802832 51802480 ID=Msa0605740-mRNA-1:three_prime_utr;Parent=Msa0605740-mRNA-1
Gene Sequence

>Msa0605740

ATGATGCCGGATGAGATTGCTGCTCGTGTGTATTGCGATGGCGAGAGAGGTTATAGTTATCTGTCACCATGGATGGCTCATTGGAAGCACACAAGTTACAAGCCAACGAAACAAAACACTGGTTTGAGTGTTGGTTGTAAGGTTAATGAATTGAAAGAAGAGAGTGATGTTGAGAAGCGTGATTTACTTGGTGGGTCGGACGTTGGATCAGATAGTTCAATGCATGTTGATGAGGAGGAGATTGGAAAATTGAAGAATGCAAGCTTGGATTCCAAGTCATTTCTTATATCACGTCTTTCTCAAAACAAAAATGGAAGAGTGCCTTTGCAGAGAGAAGAGAAGAATGTTTTGCGTGAGGGAGATGGGAAATCTGGAAAAGAATCAAGCTTTGGAGGTGATACTGTTTTTATCAACAGAGGTGGGGATCACATGTTGCCATTAACATCTTCACAAGCTGCTCCTAAAATAGAAACTTCGATAAAAGAGGGTCGGTTATTGTCTCAAGGAGTGCCGGTGAAATCCTTGTGTGCTGCTGACCTGAAGAACTTGGCTCTTTCAACGTCATTGCGGAACAACTTGGTAAACTCAGCTTCAGACATAGTGCCTACAAATGGACGTGACAAAGGAAAATCTGTGATGCCTCAACTCACCGGTGGATCGAGCTACAATTCAGCATCCCAAGAGCATTACACAGGCACTAAATATCACAGTTATTCTTCTCTCCGTGTCCCTGAGAAGCAGATGAGTAGCTTGTTAGACTCTCAAAGACCTTCCCGTTCAAAATTGTTGCAAGGCAGTTTTCCTCGTTTCCCGCATAATCCAATAGCTGGTAATGATGATGATGGACTATATGCTGTTCGTAGTCAGCACCACAAGATTCAAAATTTAATTGCTAATCCAGACATTACAAACCAGACTGCATTCTTGGAGTCAACTAAACCACATTACGGTGTAAGCTCTTCGGCGCGAGGACCACGTTCTGCTTATGGTGTGAAGGGTGCAAAAATTTACGCCCGTATAGATTCAGCAGAAGAATTATCACGAGGTCATCCCAATATTTCCCAGACAACACATCAGTTCTTTAGCGAATCAATGGCACCTACCAAAGTTAAAGGAAATAATTTCAATGAGATTCTTGATTTATCTCCGACTCCACCCGCTAGTGACCGTACTGTGGAATGTCCGAAGCTGGAAACTCTAGGGAGCTCCAGAAAGAGTGAAGAAAACGAAAATATCCACGATTTGAAATGTCCGACAAGCCCCGCAAATGAGTCATCTCCTGAACCCAACACTATGGACATTGATACTTTACATGAGAATAATCTTGCAGGTGTAGTTCCATTGCTATCTAATAAGTGCTCCAAGGATAGTCAGAACTCGCTCTCAACTCAAGGTGCAACAATTTCAGCTAGAGGAAAAAACCTGGAGAAGTCAGTGAATACAACACTACCAGATATAAATAAAAGGCCTCATGAGCTTCTCACTCTGGCAAGTCCCATGGTTGACAGGGAGACTAGTACATCAAGAACTCACAGCCTTGATGTTGAACAACTTTTTCCTCACGTAAACGGACATGCAAGGTCAAAATCTGGCAGTAGCTCTTTGGGATCAGATCCAAGTAGCAGATGGGTTAAACGACTCAAGTTATGCACATTGGACTCTGGTCATGGTACCAAGAGTGAAAATATTGGAGAACCTTCACATGTAAAATCAACAAATATTTTCAGCAAAATTATGAAAGAGAGCAAATCCAGTATGGAAGCCGAAACAGTATATCACGCTGTAGGAATAACTGTTCCAGATCCACCCCCAAAAGTATTATCAAACGACGAGTCCTCTTTTACTGAAGCGAAGGAAACTGTAGATATTACACTTTCACATCCTTGGATTCAGAGATGGAGTCATAATCGGGCTGCATGTCCCAAAAAGATGCATGAATCAGTGGAGAATCATGAACCAAAGTCTTCGAACAGTGTGAAAGAACAGTTTAAAAACAAGCAGTTTCCAAGCATTGCTGCCATGGCCCTGATGGGAAAGGCAATGAATTGTTTGAATCCATCTGAGCTTACGAAAAAGGGTCCTGTGATGGTTTGGAATACGAAGAGACTTTGA
Protein sequence

>Msa0605740

MMPDEIAARVYCDGERGYSYLSPWMAHWKHTSYKPTKQNTGLSVGCKVNELKEESDVEKRDLLGGSDVGSDSSMHVDEEEIGKLKNASLDSKSFLISRLSQNKNGRVPLQREEKNVLREGDGKSGKESSFGGDTVFINRGGDHMLPLTSSQAAPKIETSIKEGRLLSQGVPVKSLCAADLKNLALSTSLRNNLVNSASDIVPTNGRDKGKSVMPQLTGGSSYNSASQEHYTGTKYHSYSSLRVPEKQMSSLLDSQRPSRSKLLQGSFPRFPHNPIAGNDDDGLYAVRSQHHKIQNLIANPDITNQTAFLESTKPHYGVSSSARGPRSAYGVKGAKIYARIDSAEELSRGHPNISQTTHQFFSESMAPTKVKGNNFNEILDLSPTPPASDRTVECPKLETLGSSRKSEENENIHDLKCPTSPANESSPEPNTMDIDTLHENNLAGVVPLLSNKCSKDSQNSLSTQGATISARGKNLEKSVNTTLPDINKRPHELLTLASPMVDRETSTSRTHSLDVEQLFPHVNGHARSKSGSSSLGSDPSSRWVKRLKLCTLDSGHGTKSENIGEPSHVKSTNIFSKIMKESKSSMEAETVYHAVGITVPDPPPKVLSNDESSFTEAKETVDITLSHPWIQRWSHNRAACPKKMHESVENHEPKSSNSVKEQFKNKQFPSIAAMALMGKAMNCLNPSELTKKGPVMVWNTKRL*