AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0686350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686350 MtrunA17_Chr4g0035161 93.548 713 38 2 1 709 1 709 0.0 1332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686350 AT2G16365.5 30.513 390 184 15 337 709 135 454 6.16e-26 112
Msa0686350 AT2G16365.2 30.513 390 184 15 337 709 135 454 6.16e-26 112
Msa0686350 AT2G16365.6 30.513 390 184 15 337 709 135 454 6.16e-26 112
Msa0686350 AT2G16365.4 30.570 386 189 14 337 709 135 454 1.37e-25 113
Msa0686350 AT2G16365.1 30.570 386 189 14 337 709 135 454 1.88e-25 112
Msa0686350 AT2G16365.3 30.570 386 189 14 337 709 135 454 1.88e-25 112
Msa0686350 AT4G34550.2 29.075 227 132 8 488 709 76 278 3.25e-11 65.1
Msa0686350 AT4G34550.1 29.075 227 132 8 488 709 76 278 3.25e-11 65.1

Find 193 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTTATCTCTTCAAATT+TGG 0.097275 4_4:+50801749 Msa0686350:three_prime_UTR
GAAATTATTTCCTTTAATTT+TGG 0.188462 4_4:-50799942 None:intergenic
TCCATCTGAGCTTACGAAAA+AGG 0.210390 4_4:+50801526 Msa0686350:CDS
TACAAACCAGACTGCATTCT+TGG 0.228523 4_4:+50799745 Msa0686350:CDS
TCGTCGTTTGATAATACTTT+TGG 0.242119 4_4:-50801281 None:intergenic
AAGCACTTTCTATATTTATT+AGG 0.258674 4_4:+50802091 Msa0686350:three_prime_UTR
CATTGGTGATATGAAGTTTA+TGG 0.261268 4_4:+50801594 Msa0686350:three_prime_UTR
TGGAATCATTGAACCTATTA+TGG 0.292170 4_4:+50801918 Msa0686350:three_prime_UTR
TCATCATCATTACCAGCTAT+TGG 0.294330 4_4:-50799659 None:intergenic
ATGTAAAGTTATGATCCTTT+TGG 0.299353 4_4:+50802012 Msa0686350:three_prime_UTR
TACTGTTTCGGCTCCCATAC+TGG 0.307923 4_4:-50801222 None:intergenic
ATGGCACCTACCAAAATTAA+AGG 0.311974 4_4:+50799932 Msa0686350:CDS
AAAATCTGGCAGTAGCTCTT+TGG 0.312890 4_4:+50801055 Msa0686350:CDS
ATTCTTCTGCTGAATCTATA+CGG 0.313873 4_4:-50799853 None:intergenic
CGAGGACCACGTTCTGCTTA+TGG 0.314497 4_4:+50799806 Msa0686350:CDS
AGTTAATTGTAAGGTTTGAT+AGG 0.318044 4_4:+50801983 Msa0686350:three_prime_UTR
TTGCTGCACCACTATATTGT+AGG 0.322775 4_4:-50802127 None:intergenic
CCTACAAATGGACGTGAAAA+AGG 0.324170 4_4:+50799443 Msa0686350:CDS
AAGCTACTCATCTGCTTCTC+AGG 0.329459 4_4:-50799569 None:intergenic
CACTACCAGATATAAATAAA+AGG 0.339310 4_4:+50800916 Msa0686350:CDS
TTGAAAGAGCCAAGTTCTTC+AGG 0.340528 4_4:-50799376 None:intergenic
GAAAGAGAGCAAATCCAGTA+TGG 0.345718 4_4:+50801208 Msa0686350:CDS
ATGTGTTGTCTGGGAAATAT+TGG 0.350543 4_4:-50799891 None:intergenic
ATATGGCTGCATACTTTGTA+TGG 0.356113 4_4:+50801650 Msa0686350:three_prime_UTR
AAGTTTATGGTGGGGATTCA+TGG 0.360414 4_4:+50801607 Msa0686350:three_prime_UTR
CGTTTAACCCATCTGCTACT+TGG 0.365771 4_4:-50801086 None:intergenic
TTCAGAGATGGAGTCATAAT+CGG 0.369850 4_4:+50801360 Msa0686350:CDS
TCAAGGGTCCAAGTGGGATA+TGG 0.372160 4_4:-50801705 None:intergenic
AGTTCCATTGCTATCTAATA+AGG 0.373600 4_4:+50800402 Msa0686350:CDS
TGTTGTGGTGGTGGTGGTTG+TGG 0.374190 4_4:+50798781 Msa0686350:five_prime_UTR
CACGAGGGAGATGGAAAATC+TGG 0.375631 4_4:+50799191 Msa0686350:CDS
TTACATGAGAATAATCTTGC+AGG 0.380305 4_4:+50800148 Msa0686350:CDS
TAAATGCAGCTCTACTCATT+TGG 0.381366 4_4:-50801783 None:intergenic
AATTCATTGCCTTTCCCATC+AGG 0.381879 4_4:-50801496 None:intergenic
ATATTACACTTTCACATCCT+TGG 0.382045 4_4:+50801336 Msa0686350:CDS
TTGTTTATATAAAATTGATT+TGG 0.384133 4_4:+50802216 Msa0686350:three_prime_UTR
GACTCGAGCAGCACCATAAT+AGG 0.385330 4_4:-50801931 None:intergenic
ATGTCCATAGTGTTGGGTTC+AGG 0.389929 4_4:-50800118 None:intergenic
AAATCTGGCAGTAGCTCTTT+GGG 0.392253 4_4:+50801056 Msa0686350:CDS
TTCAGCGTGATATACTGTTT+CGG 0.392365 4_4:-50801234 None:intergenic
TAATTTGTGAGGAATCTATA+TGG 0.394697 4_4:+50801633 Msa0686350:three_prime_UTR
TAGTGCCTGCGTAATGCTCT+TGG 0.407139 4_4:-50799517 None:intergenic
CTCCCTAGAGTTTCCAGCTT+CGG 0.408155 4_4:-50800022 None:intergenic
GCAGCTTGTGAAGATGTTAA+TGG 0.412528 4_4:-50799275 None:intergenic
ATCTCCTGAACCCAACACTA+TGG 0.416006 4_4:+50800114 Msa0686350:CDS
AAAAGGGTCCTGTGATGGTT+TGG 0.417387 4_4:+50801543 Msa0686350:CDS
TAAAGAACTGATGTGTTGTC+TGG 0.422371 4_4:-50799901 None:intergenic
GGTACCAAGAGTGAAAATAT+TGG 0.428448 4_4:+50801140 Msa0686350:CDS
AAATCAACTTGTTTATAACT+AGG 0.429380 4_4:-50802182 None:intergenic
GTTTCCAAGCATTGCTGCCA+TGG 0.431782 4_4:+50801472 Msa0686350:CDS
ACTTTGTATGGGAAGTTACT+TGG 0.433712 4_4:+50801662 Msa0686350:three_prime_UTR
TGGCAAGTCCCATGGTTGAC+AGG 0.434405 4_4:+50800958 Msa0686350:CDS
TTTCTATATTTATTAGGACT+TGG 0.442561 4_4:+50802097 Msa0686350:three_prime_UTR
AAAATTGAAGAATGCAAGCT+TGG 0.443223 4_4:+50799085 Msa0686350:CDS
TTGTATTCACTGACTTCTCC+AGG 0.445070 4_4:-50800893 None:intergenic
TTCCTTCGCTTCAGTAAAAG+AGG 0.446015 4_4:-50801306 None:intergenic
GACTCATTCGCCGGGCTTGT+CGG 0.447631 4_4:-50800091 None:intergenic
GCAGTCTGGTTTGTAATGTC+TGG 0.451647 4_4:-50799737 None:intergenic
TTGGTGAATTGAGTACTGCC+TGG 0.451997 4_4:+50801681 Msa0686350:three_prime_UTR
ATGCAGTTCAGCAACTTTCA+AGG 0.452365 4_4:+50802065 Msa0686350:three_prime_UTR
CTGTGTTGTTGTGGTGGTGG+TGG 0.453514 4_4:+50798775 Msa0686350:five_prime_UTR
TCTGGAAAAGAATCAAGCTT+TGG 0.457478 4_4:+50799209 Msa0686350:CDS
CATGTTGATGAGGAGGAGAT+TGG 0.457977 4_4:+50799062 Msa0686350:CDS
CACAGTTTCGATTTGTTCGA+AGG 0.461466 4_4:+50798359 Msa0686350:five_prime_UTR
TATTAACAGAGTTAATTGTA+AGG 0.462815 4_4:+50801974 Msa0686350:three_prime_UTR
TACTGTGGAATGTCCGAAGC+TGG 0.463281 4_4:+50800009 Msa0686350:CDS
GTTTATAACTAGGACACATT+CGG 0.463468 4_4:-50802172 None:intergenic
TTCACACTGTTCGAAGACTT+TGG 0.464664 4_4:-50801428 None:intergenic
GAGCGAGTTCTGACTATCCT+TGG 0.464749 4_4:-50800832 None:intergenic
TGTGTTGTCTGGGAAATATT+GGG 0.465382 4_4:-50799890 None:intergenic
AGTGCCTGCGTAATGCTCTT+GGG 0.467890 4_4:-50799516 None:intergenic
CTGTTAATATATGCTTAGCT+TGG 0.476297 4_4:-50801960 None:intergenic
CAAGCTAAGCAACAAATTCA+AGG 0.477342 4_4:-50801722 None:intergenic
TCAGTTCTTTAGCGAATCAA+TGG 0.481154 4_4:+50799913 Msa0686350:CDS
TGCCTTTCCCATCAGGGCCA+TGG 0.481687 4_4:-50801489 None:intergenic
AGTTTATGGTGGGGATTCAT+GGG 0.481785 4_4:+50801608 Msa0686350:three_prime_UTR
TGTCACCATGGATGGCTCAT+TGG 0.483430 4_4:+50798901 Msa0686350:CDS
CACATCCTTGGATTCAGAGA+TGG 0.486570 4_4:+50801348 Msa0686350:CDS
CAAAACACTGGTTTGAGTGT+TGG 0.489255 4_4:+50798951 Msa0686350:CDS
GGACATGCAAGGTCAAAATC+TGG 0.489568 4_4:+50801041 Msa0686350:CDS
CATTGCTGCCATGGCCCTGA+TGG 0.489579 4_4:+50801481 Msa0686350:CDS
AACAAATTCAAGGGTCCAAG+TGG 0.489611 4_4:-50801712 None:intergenic
AGTATCAATGTCCATAGTGT+TGG 0.489719 4_4:-50800125 None:intergenic
CCAAATTTGAAGAGATAAAG+TGG 0.491726 4_4:-50801749 None:intergenic
GGAAAAGAATCAAGCTTTGG+AGG 0.491856 4_4:+50799212 Msa0686350:CDS
AGGGCCATGGCAGCAATGCT+TGG 0.495199 4_4:-50801476 None:intergenic
TCAGACATAGTGCCTACAAA+TGG 0.495845 4_4:+50799431 Msa0686350:CDS
TGTCCGAAGCTGGAAACTCT+AGG 0.496175 4_4:+50800019 Msa0686350:CDS
GGTCTGTGTTGTTGTGGTGG+TGG 0.502677 4_4:+50798772 Msa0686350:five_prime_UTR
TGCTGCTGACCTGAAGAACT+TGG 0.504230 4_4:+50799367 Msa0686350:CDS
GCCTCATGAGCTTCTCACTC+TGG 0.509485 4_4:+50800938 Msa0686350:CDS
GTCCAAGTGGGATATGGCCC+AGG 0.509913 4_4:-50801699 None:intergenic
TTGACTCCAAGAATGCAGTC+TGG 0.511680 4_4:-50799751 None:intergenic
TCAGGAGATGACTCATTCGC+CGG 0.512694 4_4:-50800100 None:intergenic
TAGTTACTTGTCACCATGGA+TGG 0.515835 4_4:+50798893 Msa0686350:CDS
AACGTCATTGTGGAACAACT+TGG 0.518171 4_4:+50799397 Msa0686350:CDS
GTATCAATGTCCATAGTGTT+GGG 0.518759 4_4:-50800124 None:intergenic
GTTGAGAAGCGTGATTTACT+TGG 0.519899 4_4:+50799008 Msa0686350:CDS
TGCCTGGGCCATATCCCACT+TGG 0.520800 4_4:+50801697 Msa0686350:three_prime_UTR
TTCCCGCATAATCCAATAGC+TGG 0.522707 4_4:+50799647 Msa0686350:CDS
GATGCTCACCTACAATATAG+TGG 0.527401 4_4:+50802119 Msa0686350:three_prime_UTR
GCACGAGCAGCAATCTCATC+CGG 0.527986 4_4:-50798828 None:intergenic
TGGTGGTGGTGGTTGTGGAG+AGG 0.528227 4_4:+50798786 Msa0686350:five_prime_UTR
ACATTACGGTGTAAGCTCTT+CGG 0.529472 4_4:+50799781 Msa0686350:CDS
TTCTTCTGCTGAATCTATAC+GGG 0.530303 4_4:-50799852 None:intergenic
TTCGTATTCCAAACCATCAC+AGG 0.531285 4_4:-50801551 None:intergenic
GAGTCAACTAAACCACATTA+CGG 0.531761 4_4:+50799767 Msa0686350:CDS
TTACTTGGTGGGTCGGACGT+TGG 0.535071 4_4:+50799023 Msa0686350:CDS
AGAAAATTTCTGAAGAGGCA+TGG 0.535376 4_4:+50801898 Msa0686350:three_prime_UTR
TCTCACTCTGGCAAGTCCCA+TGG 0.538395 4_4:+50800950 Msa0686350:CDS
TCAGAGATGGAGTCATAATC+GGG 0.539217 4_4:+50801361 Msa0686350:CDS
TTTGAAATGTCCGACAAGCC+CGG 0.540000 4_4:+50800081 Msa0686350:CDS
CAGGAGATGACTCATTCGCC+GGG 0.540141 4_4:-50800099 None:intergenic
TACCAGCTATTGGATTATGC+GGG 0.549442 4_4:-50799649 None:intergenic
TTCTTCTCTTCTCTCTGCAA+AGG 0.552529 4_4:-50799161 None:intergenic
ATTCATTGCCTTTCCCATCA+GGG 0.553766 4_4:-50801495 None:intergenic
AGTGGTCTGTGTTGTTGTGG+TGG 0.557806 4_4:+50798769 Msa0686350:five_prime_UTR
ATGGAAGAAAATTTCTGAAG+AGG 0.558812 4_4:+50801893 Msa0686350:three_prime_UTR
TCTGTGATGCCTCAACTCAC+AGG 0.560895 4_4:+50799470 Msa0686350:CDS
TGGTTTGAGTGTTGGTTGTG+AGG 0.562819 4_4:+50798959 Msa0686350:CDS
TGGCTCTTTCAACGTCATTG+TGG 0.562936 4_4:+50799387 Msa0686350:CDS
ATTACCTTATTAGATAGCAA+TGG 0.564874 4_4:-50800406 None:intergenic
AAGTTATGCACATTGGACTC+TGG 0.565570 4_4:+50801113 Msa0686350:CDS
GGCAAGTCCCATGGTTGACA+GGG 0.566145 4_4:+50800959 Msa0686350:CDS
GAGAAGCGTGATTTACTTGG+TGG 0.567599 4_4:+50799011 Msa0686350:CDS
AGAAGCGTGATTTACTTGGT+GGG 0.568090 4_4:+50799012 Msa0686350:CDS
TCCCGTTCAAAATTGTTGCA+AGG 0.569144 4_4:+50799611 Msa0686350:CDS
TGACTCCATCTCTGAATCCA+AGG 0.570038 4_4:-50801353 None:intergenic
TTCAATGCATGTTGATGAGG+AGG 0.570083 4_4:+50799055 Msa0686350:CDS
TGCACATTGGACTCTGGTCA+TGG 0.570460 4_4:+50801119 Msa0686350:CDS
CAGAACTCGCTCTCAACTCA+AGG 0.571110 4_4:+50800843 Msa0686350:CDS
TTACCAGCTATTGGATTATG+CGG 0.571389 4_4:-50799650 None:intergenic
TATGGCTGCATACTTTGTAT+GGG 0.571910 4_4:+50801651 Msa0686350:three_prime_UTR
TGCCATGGCCCTGATGGGAA+AGG 0.574061 4_4:+50801487 Msa0686350:CDS
ACGTTCTGCTTATGGTGTGA+AGG 0.574123 4_4:+50799814 Msa0686350:CDS
CTCGATCCACCTGTGAGTTG+AGG 0.574532 4_4:-50799479 None:intergenic
CTAGTCTCCCTGTCAACCAT+GGG 0.575414 4_4:-50800966 None:intergenic
CGGTCACTAGCGGGTGGAGT+CGG 0.577522 4_4:-50799986 None:intergenic
GATCAGATCCAAGTAGCAGA+TGG 0.578350 4_4:+50801078 Msa0686350:CDS
CTTCAGGTCAGCAGCACACA+AGG 0.579062 4_4:-50799360 None:intergenic
GCCAGAGTGAGAAGCTCATG+AGG 0.579520 4_4:-50800939 None:intergenic
TAGTTCAATGCATGTTGATG+AGG 0.582033 4_4:+50799052 Msa0686350:CDS
AAAGAGAGCAAATCCAGTAT+GGG 0.582674 4_4:+50801209 Msa0686350:CDS
AAAAGTGGTCTGTGTTGTTG+TGG 0.582807 4_4:+50798766 Msa0686350:five_prime_UTR
AGCTACTCATCTGCTTCTCA+GGG 0.583089 4_4:-50799568 None:intergenic
GCGTGATTTACTTGGTGGGT+CGG 0.583135 4_4:+50799016 Msa0686350:CDS
GTCCGAAGCTGGAAACTCTA+GGG 0.584314 4_4:+50800020 Msa0686350:CDS
GTTATTGTCTCAAGGAGTGC+CGG 0.586151 4_4:+50799331 Msa0686350:CDS
GAAGAGCTTACACCGTAATG+TGG 0.586677 4_4:-50799779 None:intergenic
TCCACAGTACGGTCACTAGC+GGG 0.587185 4_4:-50799995 None:intergenic
ATAGCTGGTAATGATGATGA+TGG 0.589965 4_4:+50799662 Msa0686350:CDS
ACGACTCAAGTTATGCACAT+TGG 0.591694 4_4:+50801106 Msa0686350:CDS
GAGTGTCGGTTATTGTCTCA+AGG 0.591827 4_4:+50799323 Msa0686350:CDS
ACGTGATATAAGAAATGACT+TGG 0.591964 4_4:-50799111 None:intergenic
GCTGCTCGTGCCTACCGTGA+TGG 0.592641 4_4:+50798840 Msa0686350:CDS
GTTATAGTTACTTGTCACCA+TGG 0.597366 4_4:+50798889 Msa0686350:CDS
GCAGCACACAAGGATTTCAC+CGG 0.598220 4_4:-50799350 None:intergenic
TGGTGAATTGAGTACTGCCT+GGG 0.599054 4_4:+50801682 Msa0686350:three_prime_UTR
AAAGAACTGATGTGTTGTCT+GGG 0.603862 4_4:-50799900 None:intergenic
ACTAGTCTCCCTGTCAACCA+TGG 0.606962 4_4:-50800967 None:intergenic
AAACTTCAATAAAAGAGTGT+CGG 0.607247 4_4:+50799309 Msa0686350:CDS
GGTGTAAGCTCTTCGGCGCG+AGG 0.607249 4_4:+50799788 Msa0686350:CDS
TGCTTCCAATGAGCCATCCA+TGG 0.607803 4_4:-50798906 None:intergenic
ATTCATGGGATTAATTTGTG+AGG 0.608233 4_4:+50801622 Msa0686350:three_prime_UTR
ATTGCTGCCATGGCCCTGAT+GGG 0.609352 4_4:+50801482 Msa0686350:CDS
GGTGCAACAATTTCAGCTAG+AGG 0.609715 4_4:+50800864 Msa0686350:CDS
TTGTCGGACATTTCAAATCG+TGG 0.609831 4_4:-50800075 None:intergenic
ATCAGATCCAAGTAGCAGAT+GGG 0.612774 4_4:+50801079 Msa0686350:CDS
CATCCACTCTCTCGCCATCA+CGG 0.613842 4_4:-50798854 None:intergenic
CGTTCTGCTTATGGTGTGAA+GGG 0.616183 4_4:+50799815 Msa0686350:CDS
ACCCGCTAGTGACCGTACTG+TGG 0.619376 4_4:+50799994 Msa0686350:CDS
AAGCCAACAAAACAAAACAC+TGG 0.620362 4_4:+50798939 Msa0686350:CDS
AAGCTAAGCAACAAATTCAA+GGG 0.625637 4_4:-50801721 None:intergenic
TTCCACAGTACGGTCACTAG+CGG 0.627753 4_4:-50799996 None:intergenic
GCTTCGGACATTCCACAGTA+CGG 0.632713 4_4:-50800006 None:intergenic
GTGATGCCTCAACTCACAGG+TGG 0.632905 4_4:+50799473 Msa0686350:CDS
CATAAACTTCATATCACCAA+TGG 0.633280 4_4:-50801593 None:intergenic
CACTCTCTCGCCATCACGGT+AGG 0.635337 4_4:-50798850 None:intergenic
CTACCGTGATGGCGAGAGAG+TGG 0.637886 4_4:+50798851 Msa0686350:CDS
GGTGATATGAAGTTTATGGT+GGG 0.641580 4_4:+50801598 Msa0686350:three_prime_UTR
TGGTGATATGAAGTTTATGG+TGG 0.642736 4_4:+50801597 Msa0686350:three_prime_UTR
CTTGCATGTCCGTTTACGTG+AGG 0.645651 4_4:-50801029 None:intergenic
GAAACAGTATATCACGCTGA+AGG 0.646161 4_4:+50801236 Msa0686350:CDS
CTCACGTAAACGGACATGCA+AGG 0.651317 4_4:+50801030 Msa0686350:CDS
TCATCTGCTTCTCAGGGACA+CGG 0.651975 4_4:-50799562 None:intergenic
AGAGTGGATGCTGCAATGCA+TGG 0.659923 4_4:+50798867 Msa0686350:CDS
ATTGGATTATGCGGGAAACG+AGG 0.661816 4_4:-50799641 None:intergenic
GCATCCCAAGAGCATTACGC+AGG 0.662270 4_4:+50799512 Msa0686350:CDS
ACAGTACGGTCACTAGCGGG+TGG 0.674398 4_4:-50799992 None:intergenic
ACAAATTCAAGGGTCCAAGT+GGG 0.679968 4_4:-50801711 None:intergenic
GTGATATGAAGTTTATGGTG+GGG 0.691259 4_4:+50801599 Msa0686350:three_prime_UTR
TTCACACCATAAGCAGAACG+TGG 0.741114 4_4:-50799812 None:intergenic
TCAGCAGAAGAATTATCACG+AGG 0.776016 4_4:+50799863 Msa0686350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATAGATTTTATTAATAT+CGG + chr4_4:50798475-50798494 Msa0686350:intron 10.0%
!! TTGTTTATATAAAATTGATT+TGG + chr4_4:50802216-50802235 Msa0686350:three_prime_UTR 10.0%
!!! TTTATTGAAGTTTCTATTTT+AGG - chr4_4:50799302-50799321 None:intergenic 15.0%
!!! GAAATTATTTCCTTTAATTT+TGG - chr4_4:50799945-50799964 None:intergenic 15.0%
!! ATTAAACTTAACTGAAATTA+TGG - chr4_4:50800280-50800299 None:intergenic 15.0%
!!! ATGATGTTAATTTTGTTTTT+TGG + chr4_4:50800344-50800363 Msa0686350:intron 15.0%
!!! ATATGATTTTCATTATTATC+TGG + chr4_4:50800497-50800516 Msa0686350:intron 15.0%
!!! AATAGTATTGGATTTAATAT+GGG - chr4_4:50800756-50800775 None:intergenic 15.0%
!!! TATTAGCTAATTGTGTTTTA+TGG - chr4_4:50798538-50798557 None:intergenic 20.0%
!!! TTTTTTTGCATGTATATGTT+AGG + chr4_4:50798622-50798641 Msa0686350:intron 20.0%
!!! CAATTAAATTTTGAATCTTG+TGG - chr4_4:50799712-50799731 None:intergenic 20.0%
!!! TTATTTCCTTTAATTTTGGT+AGG - chr4_4:50799941-50799960 None:intergenic 20.0%
!!! TTAATCGTAGTTTTATTGTT+TGG + chr4_4:50800295-50800314 Msa0686350:intron 20.0%
!! ACACTTTATATATCATAATC+TGG + chr4_4:50800526-50800545 Msa0686350:intron 20.0%
!!! ATATATCATAATCTGGTTTT+TGG + chr4_4:50800533-50800552 Msa0686350:intron 20.0%
!!! TATATCATAATCTGGTTTTT+GGG + chr4_4:50800534-50800553 Msa0686350:intron 20.0%
!!! ATAGTATTGGATTTAATATG+GGG - chr4_4:50800755-50800774 None:intergenic 20.0%
!!! GAATAGTATTGGATTTAATA+TGG - chr4_4:50800757-50800776 None:intergenic 20.0%
!! TATTAACAGAGTTAATTGTA+AGG + chr4_4:50801974-50801993 Msa0686350:three_prime_UTR 20.0%
!! AAGCACTTTCTATATTTATT+AGG + chr4_4:50802091-50802110 Msa0686350:three_prime_UTR 20.0%
!! TTTCTATATTTATTAGGACT+TGG + chr4_4:50802097-50802116 Msa0686350:three_prime_UTR 20.0%
!!! AAATCAACTTGTTTATAACT+AGG - chr4_4:50802185-50802204 None:intergenic 20.0%
!!! TGCATGTGATGTTTTTTTAA+TGG + chr4_4:50798682-50798701 Msa0686350:intron 25.0%
!!! ATGTGATGTTTTTTTAATGG+AGG + chr4_4:50798685-50798704 Msa0686350:intron 25.0%
! ATTCATTCTCTTGAAAATTC+AGG + chr4_4:50798711-50798730 Msa0686350:intron 25.0%
!!! GATAATGTTTTTATCAACAG+AGG + chr4_4:50799236-50799255 Msa0686350:CDS 25.0%
!! AAACTTCAATAAAAGAGTGT+CGG + chr4_4:50799309-50799328 Msa0686350:CDS 25.0%
!!! GCTTTAAGGATATCATTATA+TGG - chr4_4:50800201-50800220 None:intergenic 25.0%
! ATTGTTTGGAAAATGACATA+TGG + chr4_4:50800309-50800328 Msa0686350:intron 25.0%
!!! ATTTTGTTTTTTGGAACTGA+TGG + chr4_4:50800353-50800372 Msa0686350:intron 25.0%
! ATTACCTTATTAGATAGCAA+TGG - chr4_4:50800409-50800428 None:intergenic 25.0%
!! CTCAAAGTTTAGAATAGTAT+TGG - chr4_4:50800768-50800787 None:intergenic 25.0%
! ATACTATTCTAAACTTTGAG+CGG + chr4_4:50800768-50800787 Msa0686350:intron 25.0%
! CACTACCAGATATAAATAAA+AGG + chr4_4:50800916-50800935 Msa0686350:CDS 25.0%
!!! TTTGTTGATTTTACATGTGA+AGG - chr4_4:50801170-50801189 None:intergenic 25.0%
!! TAATTTGTGAGGAATCTATA+TGG + chr4_4:50801633-50801652 Msa0686350:three_prime_UTR 25.0%
! TAAATTGTCTTAATCCTAGA+TGG + chr4_4:50801874-50801893 Msa0686350:intron 25.0%
! AGTTAATTGTAAGGTTTGAT+AGG + chr4_4:50801983-50802002 Msa0686350:three_prime_UTR 25.0%
!! ATGTAAAGTTATGATCCTTT+TGG + chr4_4:50802012-50802031 Msa0686350:three_prime_UTR 25.0%
!! TGTAAAGTTATGATCCTTTT+GGG + chr4_4:50802013-50802032 Msa0686350:three_prime_UTR 25.0%
!! AATGAGTTGACTATTTTGTG+AGG + chr4_4:50798739-50798758 Msa0686350:five_prime_UTR 30.0%
! ATTTTGTGAGGTCATAAAAG+TGG + chr4_4:50798751-50798770 Msa0686350:five_prime_UTR 30.0%
!!! AAACCAGTGTTTTGTTTTGT+TGG - chr4_4:50798945-50798964 None:intergenic 30.0%
AAAATTGAAGAATGCAAGCT+TGG + chr4_4:50799085-50799104 Msa0686350:CDS 30.0%
ACGTGATATAAGAAATGACT+TGG - chr4_4:50799114-50799133 None:intergenic 30.0%
CGTCTTTCTCAAAACAAAAA+TGG + chr4_4:50799131-50799150 Msa0686350:CDS 30.0%
!! AATGTTTTTATCAACAGAGG+TGG + chr4_4:50799239-50799258 Msa0686350:CDS 30.0%
!! ATGTTTTTATCAACAGAGGT+GGG + chr4_4:50799240-50799259 Msa0686350:CDS 30.0%
ATTCTTCTGCTGAATCTATA+CGG - chr4_4:50799856-50799875 None:intergenic 30.0%
TTACATGAGAATAATCTTGC+AGG + chr4_4:50800148-50800167 Msa0686350:CDS 30.0%
GTATATATGCACAAAGTGAA+AGG + chr4_4:50800170-50800189 Msa0686350:intron 30.0%
TTCTATATTGCAGAGCTTTA+AGG - chr4_4:50800215-50800234 None:intergenic 30.0%
AGTTCCATTGCTATCTAATA+AGG + chr4_4:50800402-50800421 Msa0686350:CDS 30.0%
! AAGGTAATTTTGCTCATGTT+TGG + chr4_4:50800421-50800440 Msa0686350:intron 30.0%
TCATATGAATGCTTAAGCAA+CGG - chr4_4:50800483-50800502 None:intergenic 30.0%
CAACACTCATCATAATTAAC+AGG - chr4_4:50800590-50800609 None:intergenic 30.0%
! TTAAATTTTGCAGTTCTCCA+AGG + chr4_4:50800815-50800834 Msa0686350:intron 30.0%
!! TGAGGCCTTTTATTTATATC+TGG - chr4_4:50800924-50800943 None:intergenic 30.0%
GAAAAAGTTGTTCAACATCA+AGG - chr4_4:50801010-50801029 None:intergenic 30.0%
! TTCTCCAATATTTTCACTCT+TGG - chr4_4:50801147-50801166 None:intergenic 30.0%
!! TCGTTTGATAATACTTTTGG+GGG - chr4_4:50801281-50801300 None:intergenic 30.0%
!! GTCGTTTGATAATACTTTTG+GGG - chr4_4:50801282-50801301 None:intergenic 30.0%
!! CGTCGTTTGATAATACTTTT+GGG - chr4_4:50801283-50801302 None:intergenic 30.0%
!! TCGTCGTTTGATAATACTTT+TGG - chr4_4:50801284-50801303 None:intergenic 30.0%
ATATTACACTTTCACATCCT+TGG + chr4_4:50801336-50801355 Msa0686350:CDS 30.0%
!! ACTGATTCATGCATCTTTTT+GGG - chr4_4:50801395-50801414 None:intergenic 30.0%
CATAAACTTCATATCACCAA+TGG - chr4_4:50801596-50801615 None:intergenic 30.0%
! CATTGGTGATATGAAGTTTA+TGG + chr4_4:50801594-50801613 Msa0686350:three_prime_UTR 30.0%
!! ATTCATGGGATTAATTTGTG+AGG + chr4_4:50801622-50801641 Msa0686350:three_prime_UTR 30.0%
AAGCTAAGCAACAAATTCAA+GGG - chr4_4:50801724-50801743 None:intergenic 30.0%
CCAAATTTGAAGAGATAAAG+TGG - chr4_4:50801752-50801771 None:intergenic 30.0%
CCACTTTATCTCTTCAAATT+TGG + chr4_4:50801749-50801768 Msa0686350:three_prime_UTR 30.0%
ATGCTATATGCAAAAAAAGC+AGG - chr4_4:50801836-50801855 None:intergenic 30.0%
! TCAGAAATTTTCTTCCATCT+AGG - chr4_4:50801891-50801910 None:intergenic 30.0%
! ATGGAAGAAAATTTCTGAAG+AGG + chr4_4:50801893-50801912 Msa0686350:three_prime_UTR 30.0%
TGGAATCATTGAACCTATTA+TGG + chr4_4:50801918-50801937 Msa0686350:three_prime_UTR 30.0%
CTGTTAATATATGCTTAGCT+TGG - chr4_4:50801963-50801982 None:intergenic 30.0%
! GTAAAGTTATGATCCTTTTG+GGG + chr4_4:50802014-50802033 Msa0686350:three_prime_UTR 30.0%
GTTTATAACTAGGACACATT+CGG - chr4_4:50802175-50802194 None:intergenic 30.0%
! CGATTTGTTCGAAGGTAAAT+TGG + chr4_4:50798367-50798386 Msa0686350:intron 35.0%
! ATCAAAATTTTCGCTGTGAC+TGG - chr4_4:50798507-50798526 None:intergenic 35.0%
TATGTTAGGTAGTTGTGATC+TGG + chr4_4:50798636-50798655 Msa0686350:intron 35.0%
! AAAAAAGTGAGTGATGATGC+CGG + chr4_4:50798809-50798828 Msa0686350:exon 35.0%
GTTATAGTTACTTGTCACCA+TGG + chr4_4:50798889-50798908 Msa0686350:CDS 35.0%
AAGCCAACAAAACAAAACAC+TGG + chr4_4:50798939-50798958 Msa0686350:CDS 35.0%
TAGTTCAATGCATGTTGATG+AGG + chr4_4:50799052-50799071 Msa0686350:CDS 35.0%
TCTGGAAAAGAATCAAGCTT+TGG + chr4_4:50799209-50799228 Msa0686350:CDS 35.0%
!! TGTTTTTATCAACAGAGGTG+GGG + chr4_4:50799241-50799260 Msa0686350:CDS 35.0%
! TGCCTTGCAACAATTTTGAA+CGG - chr4_4:50799616-50799635 None:intergenic 35.0%
TTACCAGCTATTGGATTATG+CGG - chr4_4:50799653-50799672 None:intergenic 35.0%
TCATCATCATTACCAGCTAT+TGG - chr4_4:50799662-50799681 None:intergenic 35.0%
! ATAGCTGGTAATGATGATGA+TGG + chr4_4:50799662-50799681 Msa0686350:CDS 35.0%
GAGTCAACTAAACCACATTA+CGG + chr4_4:50799767-50799786 Msa0686350:CDS 35.0%
TTCTTCTGCTGAATCTATAC+GGG - chr4_4:50799855-50799874 None:intergenic 35.0%
TGTGTTGTCTGGGAAATATT+GGG - chr4_4:50799893-50799912 None:intergenic 35.0%
ATGTGTTGTCTGGGAAATAT+TGG - chr4_4:50799894-50799913 None:intergenic 35.0%
AAAGAACTGATGTGTTGTCT+GGG - chr4_4:50799903-50799922 None:intergenic 35.0%
TAAAGAACTGATGTGTTGTC+TGG - chr4_4:50799904-50799923 None:intergenic 35.0%
TCAGTTCTTTAGCGAATCAA+TGG + chr4_4:50799913-50799932 Msa0686350:CDS 35.0%
ATGGCACCTACCAAAATTAA+AGG + chr4_4:50799932-50799951 Msa0686350:CDS 35.0%
! TTCGTTTTCTTCACTCTTTC+TGG - chr4_4:50800050-50800069 None:intergenic 35.0%
GTATCAATGTCCATAGTGTT+GGG - chr4_4:50800127-50800146 None:intergenic 35.0%
AGTATCAATGTCCATAGTGT+TGG - chr4_4:50800128-50800147 None:intergenic 35.0%
AGGGTGGAAAATTAAATGCA+TGG - chr4_4:50800458-50800477 None:intergenic 35.0%
AATATGGGGTGATATGATAG+TGG - chr4_4:50800741-50800760 None:intergenic 35.0%
!! CAACTTTTTCCTCACGTAAA+CGG + chr4_4:50801020-50801039 Msa0686350:CDS 35.0%
GGTACCAAGAGTGAAAATAT+TGG + chr4_4:50801140-50801159 Msa0686350:CDS 35.0%
AAAGAGAGCAAATCCAGTAT+GGG + chr4_4:50801209-50801228 Msa0686350:CDS 35.0%
TTCAGCGTGATATACTGTTT+CGG - chr4_4:50801237-50801256 None:intergenic 35.0%
!! TTTGATAATACTTTTGGGGG+TGG - chr4_4:50801278-50801297 None:intergenic 35.0%
TTCAGAGATGGAGTCATAAT+CGG + chr4_4:50801360-50801379 Msa0686350:CDS 35.0%
!!! CACTGATTCATGCATCTTTT+TGG - chr4_4:50801396-50801415 None:intergenic 35.0%
CAAAAAGATGCATGAATCAG+TGG + chr4_4:50801394-50801413 Msa0686350:CDS 35.0%
!!! CGAAGAGACTTTGAAGTTTT+TGG + chr4_4:50801570-50801589 Msa0686350:exon 35.0%
!!! ACTTTGAAGTTTTTGGCCAT+TGG + chr4_4:50801577-50801596 Msa0686350:exon 35.0%
TGGTGATATGAAGTTTATGG+TGG + chr4_4:50801597-50801616 Msa0686350:three_prime_UTR 35.0%
GGTGATATGAAGTTTATGGT+GGG + chr4_4:50801598-50801617 Msa0686350:three_prime_UTR 35.0%
GTGATATGAAGTTTATGGTG+GGG + chr4_4:50801599-50801618 Msa0686350:three_prime_UTR 35.0%
ATATGGCTGCATACTTTGTA+TGG + chr4_4:50801650-50801669 Msa0686350:three_prime_UTR 35.0%
TATGGCTGCATACTTTGTAT+GGG + chr4_4:50801651-50801670 Msa0686350:three_prime_UTR 35.0%
ACTTTGTATGGGAAGTTACT+TGG + chr4_4:50801662-50801681 Msa0686350:three_prime_UTR 35.0%
CAAGCTAAGCAACAAATTCA+AGG - chr4_4:50801725-50801744 None:intergenic 35.0%
TAAATGCAGCTCTACTCATT+TGG - chr4_4:50801786-50801805 None:intergenic 35.0%
! AGAAAATTTCTGAAGAGGCA+TGG + chr4_4:50801898-50801917 Msa0686350:three_prime_UTR 35.0%
ATAGAAAAATCCACCCCAAA+AGG - chr4_4:50802030-50802049 None:intergenic 35.0%
! CACAGTTTCGATTTGTTCGA+AGG + chr4_4:50798359-50798378 Msa0686350:five_prime_UTR 40.0%
GCTAGTGATTTATGCGTGTT+AGG + chr4_4:50798573-50798592 Msa0686350:intron 40.0%
! AAAAGTGGTCTGTGTTGTTG+TGG + chr4_4:50798766-50798785 Msa0686350:five_prime_UTR 40.0%
TAGTTACTTGTCACCATGGA+TGG + chr4_4:50798893-50798912 Msa0686350:CDS 40.0%
!! CAAAACACTGGTTTGAGTGT+TGG + chr4_4:50798951-50798970 Msa0686350:CDS 40.0%
! GTTGAGAAGCGTGATTTACT+TGG + chr4_4:50799008-50799027 Msa0686350:CDS 40.0%
! AGAAGCGTGATTTACTTGGT+GGG + chr4_4:50799012-50799031 Msa0686350:CDS 40.0%
! TTCAATGCATGTTGATGAGG+AGG + chr4_4:50799055-50799074 Msa0686350:CDS 40.0%
TTCTTCTCTTCTCTCTGCAA+AGG - chr4_4:50799164-50799183 None:intergenic 40.0%
! AGAGAAGAATGTTTTGCACG+AGG + chr4_4:50799175-50799194 Msa0686350:CDS 40.0%
! GAGAAGAATGTTTTGCACGA+GGG + chr4_4:50799176-50799195 Msa0686350:CDS 40.0%
! GGAAAAGAATCAAGCTTTGG+AGG + chr4_4:50799212-50799231 Msa0686350:CDS 40.0%
GCAGCTTGTGAAGATGTTAA+TGG - chr4_4:50799278-50799297 None:intergenic 40.0%
TTGAAAGAGCCAAGTTCTTC+AGG - chr4_4:50799379-50799398 None:intergenic 40.0%
AACGTCATTGTGGAACAACT+TGG + chr4_4:50799397-50799416 Msa0686350:CDS 40.0%
TCAGACATAGTGCCTACAAA+TGG + chr4_4:50799431-50799450 Msa0686350:CDS 40.0%
!! CCTTTTTCACGTCCATTTGT+AGG - chr4_4:50799446-50799465 None:intergenic 40.0%
CCTACAAATGGACGTGAAAA+AGG + chr4_4:50799443-50799462 Msa0686350:CDS 40.0%
! TGCAACAATTTTGAACGGGA+AGG - chr4_4:50799611-50799630 None:intergenic 40.0%
TCCCGTTCAAAATTGTTGCA+AGG + chr4_4:50799611-50799630 Msa0686350:CDS 40.0%
! GCCTTGCAACAATTTTGAAC+GGG - chr4_4:50799615-50799634 None:intergenic 40.0%
TACCAGCTATTGGATTATGC+GGG - chr4_4:50799652-50799671 None:intergenic 40.0%
TACAAACCAGACTGCATTCT+TGG + chr4_4:50799745-50799764 Msa0686350:CDS 40.0%
ACATTACGGTGTAAGCTCTT+CGG + chr4_4:50799781-50799800 Msa0686350:CDS 40.0%
TCAGCAGAAGAATTATCACG+AGG + chr4_4:50799863-50799882 Msa0686350:CDS 40.0%
TTGTCGGACATTTCAAATCG+TGG - chr4_4:50800078-50800097 None:intergenic 40.0%
!! ACAACGAAAGAGTTGGTATG+AGG - chr4_4:50800654-50800673 None:intergenic 40.0%
TTCAGCTAGAGGAAAAAACC+TGG + chr4_4:50800875-50800894 Msa0686350:CDS 40.0%
!! TTGTATTCACTGACTTCTCC+AGG - chr4_4:50800896-50800915 None:intergenic 40.0%
AAAATCTGGCAGTAGCTCTT+TGG + chr4_4:50801055-50801074 Msa0686350:CDS 40.0%
AAATCTGGCAGTAGCTCTTT+GGG + chr4_4:50801056-50801075 Msa0686350:CDS 40.0%
ATCAGATCCAAGTAGCAGAT+GGG + chr4_4:50801079-50801098 Msa0686350:CDS 40.0%
ACGACTCAAGTTATGCACAT+TGG + chr4_4:50801106-50801125 Msa0686350:CDS 40.0%
AAGTTATGCACATTGGACTC+TGG + chr4_4:50801113-50801132 Msa0686350:CDS 40.0%
GAAAGAGAGCAAATCCAGTA+TGG + chr4_4:50801208-50801227 Msa0686350:CDS 40.0%
GAAACAGTATATCACGCTGA+AGG + chr4_4:50801236-50801255 Msa0686350:CDS 40.0%
TTCCTTCGCTTCAGTAAAAG+AGG - chr4_4:50801309-50801328 None:intergenic 40.0%
TCAGAGATGGAGTCATAATC+GGG + chr4_4:50801361-50801380 Msa0686350:CDS 40.0%
TTCACACTGTTCGAAGACTT+TGG - chr4_4:50801431-50801450 None:intergenic 40.0%
ATTCATTGCCTTTCCCATCA+GGG - chr4_4:50801498-50801517 None:intergenic 40.0%
AATTCATTGCCTTTCCCATC+AGG - chr4_4:50801499-50801518 None:intergenic 40.0%
TCCATCTGAGCTTACGAAAA+AGG + chr4_4:50801526-50801545 Msa0686350:CDS 40.0%
CCATCTGAGCTTACGAAAAA+GGG + chr4_4:50801527-50801546 Msa0686350:CDS 40.0%
TTCGTATTCCAAACCATCAC+AGG - chr4_4:50801554-50801573 None:intergenic 40.0%
! AAGTTTATGGTGGGGATTCA+TGG + chr4_4:50801607-50801626 Msa0686350:three_prime_UTR 40.0%
! AGTTTATGGTGGGGATTCAT+GGG + chr4_4:50801608-50801627 Msa0686350:three_prime_UTR 40.0%
ACAAATTCAAGGGTCCAAGT+GGG - chr4_4:50801714-50801733 None:intergenic 40.0%
AACAAATTCAAGGGTCCAAG+TGG - chr4_4:50801715-50801734 None:intergenic 40.0%
!! AAGTTATGATCCTTTTGGGG+TGG + chr4_4:50802017-50802036 Msa0686350:three_prime_UTR 40.0%
ATGCAGTTCAGCAACTTTCA+AGG + chr4_4:50802065-50802084 Msa0686350:three_prime_UTR 40.0%
GATGCTCACCTACAATATAG+TGG + chr4_4:50802119-50802138 Msa0686350:three_prime_UTR 40.0%
TTGCTGCACCACTATATTGT+AGG - chr4_4:50802130-50802149 None:intergenic 40.0%
!! TGGTTTGAGTGTTGGTTGTG+AGG + chr4_4:50798959-50798978 Msa0686350:CDS 45.0%
! GAGAAGCGTGATTTACTTGG+TGG + chr4_4:50799011-50799030 Msa0686350:CDS 45.0%
! CATGTTGATGAGGAGGAGAT+TGG + chr4_4:50799062-50799081 Msa0686350:CDS 45.0%
! AATGTTTTGCACGAGGGAGA+TGG + chr4_4:50799182-50799201 Msa0686350:CDS 45.0%
!! GAGTGTCGGTTATTGTCTCA+AGG + chr4_4:50799323-50799342 Msa0686350:CDS 45.0%
! GTTATTGTCTCAAGGAGTGC+CGG + chr4_4:50799331-50799350 Msa0686350:CDS 45.0%
TGGCTCTTTCAACGTCATTG+TGG + chr4_4:50799387-50799406 Msa0686350:CDS 45.0%
AGCTACTCATCTGCTTCTCA+GGG - chr4_4:50799571-50799590 None:intergenic 45.0%
AAGCTACTCATCTGCTTCTC+AGG - chr4_4:50799572-50799591 None:intergenic 45.0%
ATTGGATTATGCGGGAAACG+AGG - chr4_4:50799644-50799663 None:intergenic 45.0%
TTCCCGCATAATCCAATAGC+TGG + chr4_4:50799647-50799666 Msa0686350:CDS 45.0%
! GCAGTCTGGTTTGTAATGTC+TGG - chr4_4:50799740-50799759 None:intergenic 45.0%
TTGACTCCAAGAATGCAGTC+TGG - chr4_4:50799754-50799773 None:intergenic 45.0%
GAAGAGCTTACACCGTAATG+TGG - chr4_4:50799782-50799801 None:intergenic 45.0%
TTCACACCATAAGCAGAACG+TGG - chr4_4:50799815-50799834 None:intergenic 45.0%
ACGTTCTGCTTATGGTGTGA+AGG + chr4_4:50799814-50799833 Msa0686350:CDS 45.0%
CGTTCTGCTTATGGTGTGAA+GGG + chr4_4:50799815-50799834 Msa0686350:CDS 45.0%
! TTTGAAATGTCCGACAAGCC+CGG + chr4_4:50800081-50800100 Msa0686350:CDS 45.0%
ATCTCCTGAACCCAACACTA+TGG + chr4_4:50800114-50800133 Msa0686350:CDS 45.0%
! ATGTCCATAGTGTTGGGTTC+AGG - chr4_4:50800121-50800140 None:intergenic 45.0%
AATGGAACTACACCTGCAAC+AGG - chr4_4:50800391-50800410 None:intergenic 45.0%
GAATGCTTAAGCAACGGTGA+GGG - chr4_4:50800477-50800496 None:intergenic 45.0%
TGAATGCTTAAGCAACGGTG+AGG - chr4_4:50800478-50800497 None:intergenic 45.0%
GTGTGTGACAACGAAAGAGT+TGG - chr4_4:50800661-50800680 None:intergenic 45.0%
GAAAAACTCGTGCGATGATC+AGG - chr4_4:50800716-50800735 None:intergenic 45.0%
CTTTGAGCGGTAAACATGCA+TGG + chr4_4:50800781-50800800 Msa0686350:intron 45.0%
GGTGCAACAATTTCAGCTAG+AGG + chr4_4:50800864-50800883 Msa0686350:CDS 45.0%
GGACATGCAAGGTCAAAATC+TGG + chr4_4:50801041-50801060 Msa0686350:CDS 45.0%
GATCAGATCCAAGTAGCAGA+TGG + chr4_4:50801078-50801097 Msa0686350:CDS 45.0%
CGTTTAACCCATCTGCTACT+TGG - chr4_4:50801089-50801108 None:intergenic 45.0%
!! AATACTTTTGGGGGTGGATC+TGG - chr4_4:50801272-50801291 None:intergenic 45.0%
! GTCCTCTTTTACTGAAGCGA+AGG + chr4_4:50801304-50801323 Msa0686350:CDS 45.0%
CACATCCTTGGATTCAGAGA+TGG + chr4_4:50801348-50801367 Msa0686350:CDS 45.0%
TGACTCCATCTCTGAATCCA+AGG - chr4_4:50801356-50801375 None:intergenic 45.0%
!! CCCTTTTTCGTAAGCTCAGA+TGG - chr4_4:50801530-50801549 None:intergenic 45.0%
TACGAAAAAGGGTCCTGTGA+TGG + chr4_4:50801538-50801557 Msa0686350:CDS 45.0%
AAAAGGGTCCTGTGATGGTT+TGG + chr4_4:50801543-50801562 Msa0686350:CDS 45.0%
! TTGGTGAATTGAGTACTGCC+TGG + chr4_4:50801681-50801700 Msa0686350:three_prime_UTR 45.0%
! TGGTGAATTGAGTACTGCCT+GGG + chr4_4:50801682-50801701 Msa0686350:three_prime_UTR 45.0%
! AGTGGTCTGTGTTGTTGTGG+TGG + chr4_4:50798769-50798788 Msa0686350:five_prime_UTR 50.0%
AGAGTGGATGCTGCAATGCA+TGG + chr4_4:50798867-50798886 Msa0686350:CDS 50.0%
TGTCACCATGGATGGCTCAT+TGG + chr4_4:50798901-50798920 Msa0686350:CDS 50.0%
TGCTTCCAATGAGCCATCCA+TGG - chr4_4:50798909-50798928 None:intergenic 50.0%
! GCGTGATTTACTTGGTGGGT+CGG + chr4_4:50799016-50799035 Msa0686350:CDS 50.0%
CACGAGGGAGATGGAAAATC+TGG + chr4_4:50799191-50799210 Msa0686350:CDS 50.0%
GCAGCACACAAGGATTTCAC+CGG - chr4_4:50799353-50799372 None:intergenic 50.0%
TGCTGCTGACCTGAAGAACT+TGG + chr4_4:50799367-50799386 Msa0686350:CDS 50.0%
TCTGTGATGCCTCAACTCAC+AGG + chr4_4:50799470-50799489 Msa0686350:CDS 50.0%
AGTGCCTGCGTAATGCTCTT+GGG - chr4_4:50799519-50799538 None:intergenic 50.0%
TAGTGCCTGCGTAATGCTCT+TGG - chr4_4:50799520-50799539 None:intergenic 50.0%
TCATCTGCTTCTCAGGGACA+CGG - chr4_4:50799565-50799584 None:intergenic 50.0%
TTCCACAGTACGGTCACTAG+CGG - chr4_4:50799999-50800018 None:intergenic 50.0%
GCTTCGGACATTCCACAGTA+CGG - chr4_4:50800009-50800028 None:intergenic 50.0%
TACTGTGGAATGTCCGAAGC+TGG + chr4_4:50800009-50800028 Msa0686350:CDS 50.0%
TGTCCGAAGCTGGAAACTCT+AGG + chr4_4:50800019-50800038 Msa0686350:CDS 50.0%
GTCCGAAGCTGGAAACTCTA+GGG + chr4_4:50800020-50800039 Msa0686350:CDS 50.0%
CTCCCTAGAGTTTCCAGCTT+CGG - chr4_4:50800025-50800044 None:intergenic 50.0%
TCAGGAGATGACTCATTCGC+CGG - chr4_4:50800103-50800122 None:intergenic 50.0%
! GAGCGAGTTCTGACTATCCT+TGG - chr4_4:50800835-50800854 None:intergenic 50.0%
CAGAACTCGCTCTCAACTCA+AGG + chr4_4:50800843-50800862 Msa0686350:CDS 50.0%
CTAGTCTCCCTGTCAACCAT+GGG - chr4_4:50800969-50800988 None:intergenic 50.0%
! ACTAGTCTCCCTGTCAACCA+TGG - chr4_4:50800970-50800989 None:intergenic 50.0%
CTTGCATGTCCGTTTACGTG+AGG - chr4_4:50801032-50801051 None:intergenic 50.0%
CTCACGTAAACGGACATGCA+AGG + chr4_4:50801030-50801049 Msa0686350:CDS 50.0%
TGCACATTGGACTCTGGTCA+TGG + chr4_4:50801119-50801138 Msa0686350:CDS 50.0%
TACTGTTTCGGCTCCCATAC+TGG - chr4_4:50801225-50801244 None:intergenic 50.0%
! GTTTCCAAGCATTGCTGCCA+TGG + chr4_4:50801472-50801491 Msa0686350:CDS 50.0%
TCAAGGGTCCAAGTGGGATA+TGG - chr4_4:50801708-50801727 None:intergenic 50.0%
GACTCGAGCAGCACCATAAT+AGG - chr4_4:50801934-50801953 None:intergenic 50.0%
! GGTCTGTGTTGTTGTGGTGG+TGG + chr4_4:50798772-50798791 Msa0686350:five_prime_UTR 55.0%
!! CTGTGTTGTTGTGGTGGTGG+TGG + chr4_4:50798775-50798794 Msa0686350:five_prime_UTR 55.0%
!! TGTTGTGGTGGTGGTGGTTG+TGG + chr4_4:50798781-50798800 Msa0686350:five_prime_UTR 55.0%
GCACGAGCAGCAATCTCATC+CGG - chr4_4:50798831-50798850 None:intergenic 55.0%
CATCCACTCTCTCGCCATCA+CGG - chr4_4:50798857-50798876 None:intergenic 55.0%
! TTACTTGGTGGGTCGGACGT+TGG + chr4_4:50799023-50799042 Msa0686350:CDS 55.0%
CTTCAGGTCAGCAGCACACA+AGG - chr4_4:50799363-50799382 None:intergenic 55.0%
GTGATGCCTCAACTCACAGG+TGG + chr4_4:50799473-50799492 Msa0686350:CDS 55.0%
CTCGATCCACCTGTGAGTTG+AGG - chr4_4:50799482-50799501 None:intergenic 55.0%
!! GCATCCCAAGAGCATTACGC+AGG + chr4_4:50799512-50799531 Msa0686350:CDS 55.0%
CGAGGACCACGTTCTGCTTA+TGG + chr4_4:50799806-50799825 Msa0686350:CDS 55.0%
TCCACAGTACGGTCACTAGC+GGG - chr4_4:50799998-50800017 None:intergenic 55.0%
CAGGAGATGACTCATTCGCC+GGG - chr4_4:50800102-50800121 None:intergenic 55.0%
TACACCTGCAACAGGCAGGA+AGG - chr4_4:50800383-50800402 None:intergenic 55.0%
GAACTACACCTGCAACAGGC+AGG - chr4_4:50800387-50800406 None:intergenic 55.0%
TGCTTAAGCAACGGTGAGGG+TGG - chr4_4:50800474-50800493 None:intergenic 55.0%
GCCTCATGAGCTTCTCACTC+TGG + chr4_4:50800938-50800957 Msa0686350:CDS 55.0%
GCCAGAGTGAGAAGCTCATG+AGG - chr4_4:50800942-50800961 None:intergenic 55.0%
TCTCACTCTGGCAAGTCCCA+TGG + chr4_4:50800950-50800969 Msa0686350:CDS 55.0%
TGGCAAGTCCCATGGTTGAC+AGG + chr4_4:50800958-50800977 Msa0686350:CDS 55.0%
GGCAAGTCCCATGGTTGACA+GGG + chr4_4:50800959-50800978 Msa0686350:CDS 55.0%
ATTGCTGCCATGGCCCTGAT+GGG + chr4_4:50801482-50801501 Msa0686350:CDS 55.0%
!! TGGTGGTGGTGGTTGTGGAG+AGG + chr4_4:50798786-50798805 Msa0686350:five_prime_UTR 60.0%
CACTCTCTCGCCATCACGGT+AGG - chr4_4:50798853-50798872 None:intergenic 60.0%
! CTACCGTGATGGCGAGAGAG+TGG + chr4_4:50798851-50798870 Msa0686350:CDS 60.0%
ACAGTACGGTCACTAGCGGG+TGG - chr4_4:50799995-50800014 None:intergenic 60.0%
ACCCGCTAGTGACCGTACTG+TGG + chr4_4:50799994-50800013 Msa0686350:CDS 60.0%
GACTCATTCGCCGGGCTTGT+CGG - chr4_4:50800094-50800113 None:intergenic 60.0%
TGCTCCTTCCTGCCTGTTGC+AGG + chr4_4:50800376-50800395 Msa0686350:intron 60.0%
AGGGCCATGGCAGCAATGCT+TGG - chr4_4:50801479-50801498 None:intergenic 60.0%
CATTGCTGCCATGGCCCTGA+TGG + chr4_4:50801481-50801500 Msa0686350:CDS 60.0%
TGCCATGGCCCTGATGGGAA+AGG + chr4_4:50801487-50801506 Msa0686350:CDS 60.0%
TGCCTTTCCCATCAGGGCCA+TGG - chr4_4:50801492-50801511 None:intergenic 60.0%
TGCCTGGGCCATATCCCACT+TGG + chr4_4:50801697-50801716 Msa0686350:three_prime_UTR 60.0%
GTCCAAGTGGGATATGGCCC+AGG - chr4_4:50801702-50801721 None:intergenic 60.0%
GCTGCTCGTGCCTACCGTGA+TGG + chr4_4:50798840-50798859 Msa0686350:CDS 65.0%
GGTGTAAGCTCTTCGGCGCG+AGG + chr4_4:50799788-50799807 Msa0686350:CDS 65.0%
! CGGTCACTAGCGGGTGGAGT+CGG - chr4_4:50799989-50800008 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 50798309 50802245 50798309 ID=Msa0686350;Name=Msa0686350
chr4_4 mRNA 50798309 50802245 50798309 ID=Msa0686350-mRNA-1;Parent=Msa0686350;Name=Msa0686350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=161|1|1|1|0.5|0.2|5|589|709
chr4_4 exon 50798309 50798380 50798309 ID=Msa0686350-mRNA-1:exon:13047;Parent=Msa0686350-mRNA-1
chr4_4 exon 50798733 50800169 50798733 ID=Msa0686350-mRNA-1:exon:13048;Parent=Msa0686350-mRNA-1
chr4_4 exon 50800398 50800423 50800398 ID=Msa0686350-mRNA-1:exon:13049;Parent=Msa0686350-mRNA-1
chr4_4 exon 50800828 50801819 50800828 ID=Msa0686350-mRNA-1:exon:13050;Parent=Msa0686350-mRNA-1
chr4_4 exon 50801893 50802245 50801893 ID=Msa0686350-mRNA-1:exon:13051;Parent=Msa0686350-mRNA-1
chr4_4 five_prime_UTR 50798309 50798380 50798309 ID=Msa0686350-mRNA-1:five_prime_utr;Parent=Msa0686350-mRNA-1
chr4_4 five_prime_UTR 50798733 50798821 50798733 ID=Msa0686350-mRNA-1:five_prime_utr;Parent=Msa0686350-mRNA-1
chr4_4 CDS 50798822 50800169 50798822 ID=Msa0686350-mRNA-1:cds;Parent=Msa0686350-mRNA-1
chr4_4 CDS 50800398 50800423 50800398 ID=Msa0686350-mRNA-1:cds;Parent=Msa0686350-mRNA-1
chr4_4 CDS 50800828 50801583 50800828 ID=Msa0686350-mRNA-1:cds;Parent=Msa0686350-mRNA-1
chr4_4 three_prime_UTR 50801584 50801819 50801584 ID=Msa0686350-mRNA-1:three_prime_utr;Parent=Msa0686350-mRNA-1
chr4_4 three_prime_UTR 50801893 50802245 50801893 ID=Msa0686350-mRNA-1:three_prime_utr;Parent=Msa0686350-mRNA-1
Gene Sequence

>Msa0686350

ATGATGCCGGATGAGATTGCTGCTCGTGCCTACCGTGATGGCGAGAGAGTGGATGCTGCAATGCATGGTTATAGTTACTTGTCACCATGGATGGCTCATTGGAAGCACACAAGTTACAAGCCAACAAAACAAAACACTGGTTTGAGTGTTGGTTGTGAGGTTAATGAACTGAAAGAAGAGAGTGATGTTGAGAAGCGTGATTTACTTGGTGGGTCGGACGTTGGATCAGATAGTTCAATGCATGTTGATGAGGAGGAGATTGGAAAATTGAAGAATGCAAGCTTGGATTCCAAGTCATTTCTTATATCACGTCTTTCTCAAAACAAAAATGGAAGAGTGCCTTTGCAGAGAGAAGAGAAGAATGTTTTGCACGAGGGAGATGGAAAATCTGGAAAAGAATCAAGCTTTGGAGGTGATAATGTTTTTATCAACAGAGGTGGGGATCACTTGTTGCCATTAACATCTTCACAAGCTGCTCCTAAAATAGAAACTTCAATAAAAGAGTGTCGGTTATTGTCTCAAGGAGTGCCGGTGAAATCCTTGTGTGCTGCTGACCTGAAGAACTTGGCTCTTTCAACGTCATTGTGGAACAACTTGGTAAACTCAGCTTCAGACATAGTGCCTACAAATGGACGTGAAAAAGGAAAATCTGTGATGCCTCAACTCACAGGTGGATCGAGCTACAATTCAGCATCCCAAGAGCATTACGCAGGCACTAAATATCACAGTTATTCTTCTCTCCGTGTCCCTGAGAAGCAGATGAGTAGCTTGTTAGACTCTCAAAGACCTTCCCGTTCAAAATTGTTGCAAGGCAGTTTTCCTCGTTTCCCGCATAATCCAATAGCTGGTAATGATGATGATGGACTATATGCTGTTCGTAGTCAGCACCACAAGATTCAAAATTTAATTGCTAATCCAGACATTACAAACCAGACTGCATTCTTGGAGTCAACTAAACCACATTACGGTGTAAGCTCTTCGGCGCGAGGACCACGTTCTGCTTATGGTGTGAAGGGTGCAAAAATTTACGCCCGTATAGATTCAGCAGAAGAATTATCACGAGGTCATCCCAATATTTCCCAGACAACACATCAGTTCTTTAGCGAATCAATGGCACCTACCAAAATTAAAGGAAATAATTTCAATGAGATTCTTGATTTATCTCCGACTCCACCCGCTAGTGACCGTACTGTGGAATGTCCGAAGCTGGAAACTCTAGGGAGCTCCAGAAAGAGTGAAGAAAACGAAAATATCCACGATTTGAAATGTCCGACAAGCCCGGCGAATGAGTCATCTCCTGAACCCAACACTATGGACATTGATACTTTACATGAGAATAATCTTGCAGGTGTAGTTCCATTGCTATCTAATAAGTTCTCCAAGGATAGTCAGAACTCGCTCTCAACTCAAGGTGCAACAATTTCAGCTAGAGGAAAAAACCTGGAGAAGTCAGTGAATACAACACTACCAGATATAAATAAAAGGCCTCATGAGCTTCTCACTCTGGCAAGTCCCATGGTTGACAGGGAGACTAGTACATCAAGAACTCACAGCCTTGATGTTGAACAACTTTTTCCTCACGTAAACGGACATGCAAGGTCAAAATCTGGCAGTAGCTCTTTGGGATCAGATCCAAGTAGCAGATGGGTTAAACGACTCAAGTTATGCACATTGGACTCTGGTCATGGTACCAAGAGTGAAAATATTGGAGAACCTTCACATGTAAAATCAACAAATATTTTCAGCAAAATTATGAAAGAGAGCAAATCCAGTATGGGAGCCGAAACAGTATATCACGCTGAAGGAATAACTGTTCCAGATCCACCCCCAAAAGTATTATCAAACGACGAGTCCTCTTTTACTGAAGCGAAGGAAACTGTAGATATTACACTTTCACATCCTTGGATTCAGAGATGGAGTCATAATCGGGCTGCATGTCCCAAAAAGATGCATGAATCAGTGGAGAATCATGAACCAAAGTCTTCGAACAGTGTGAAAGAACAGTTTAAAAACAAGCAGTTTCCAAGCATTGCTGCCATGGCCCTGATGGGAAAGGCAATGAATTGTTTGAATCCATCTGAGCTTACGAAAAAGGGTCCTGTGATGGTTTGGAATACGAAGAGACTTTGA
Protein sequence

>Msa0686350

MMPDEIAARAYRDGERVDAAMHGYSYLSPWMAHWKHTSYKPTKQNTGLSVGCEVNELKEESDVEKRDLLGGSDVGSDSSMHVDEEEIGKLKNASLDSKSFLISRLSQNKNGRVPLQREEKNVLHEGDGKSGKESSFGGDNVFINRGGDHLLPLTSSQAAPKIETSIKECRLLSQGVPVKSLCAADLKNLALSTSLWNNLVNSASDIVPTNGREKGKSVMPQLTGGSSYNSASQEHYAGTKYHSYSSLRVPEKQMSSLLDSQRPSRSKLLQGSFPRFPHNPIAGNDDDGLYAVRSQHHKIQNLIANPDITNQTAFLESTKPHYGVSSSARGPRSAYGVKGAKIYARIDSAEELSRGHPNISQTTHQFFSESMAPTKIKGNNFNEILDLSPTPPASDRTVECPKLETLGSSRKSEENENIHDLKCPTSPANESSPEPNTMDIDTLHENNLAGVVPLLSNKFSKDSQNSLSTQGATISARGKNLEKSVNTTLPDINKRPHELLTLASPMVDRETSTSRTHSLDVEQLFPHVNGHARSKSGSSSLGSDPSSRWVKRLKLCTLDSGHGTKSENIGEPSHVKSTNIFSKIMKESKSSMGAETVYHAEGITVPDPPPKVLSNDESSFTEAKETVDITLSHPWIQRWSHNRAACPKKMHESVENHEPKSSNSVKEQFKNKQFPSIAAMALMGKAMNCLNPSELTKKGPVMVWNTKRL*