AlfalfaGEDB | Msa0686350

M. sativa cultivar zhongmu-4 / Msa0686350

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007610 GO:0007622 GO:0007623 GO:0008150 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048512 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0080167 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686350	XP_003606942.1	93.548	713	38	2	1	709	1	709	0.0	1332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686350	sp\|Q84V03\|FB348_ARATH	30.570	386	189	14	337	709	135	454	1.85e-24	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686350	G7JHC9	93.548	713	38	2	1	709	1	709	0.0	1332

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0223500	Msa0686350	0.825757	3.939277e-54	-8.615850e-47
Msa0225720	Msa0686350	-0.820845	5.530823e-53	-8.615850e-47
Msa0264580	Msa0686350	0.825988	3.470526e-54	-8.615850e-47
Msa0295030	Msa0686350	0.827404	1.594074e-54	-8.615850e-47
Msa0339970	Msa0686350	0.823873	1.095876e-53	-8.615850e-47
Msa0502900	Msa0686350	0.808581	2.886176e-50	-8.615850e-47
Msa0605740	Msa0686350	0.900697	5.652278e-78	-8.615850e-47
Msa0686350	Msa1051480	0.802662	5.044138e-49	-8.615850e-47
Msa0686350	Msa1269440	-0.810674	1.025071e-50	-8.615850e-47
Msa0686350	Msa1422380	-0.821754	3.412042e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686350	MtrunA17_Chr4g0035161	93.548	713	38	2	1	709	1	709	0.0	1332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0686350	AT2G16365.5	30.513	390	184	15	337	709	135	454	6.16e-26	112
Msa0686350	AT2G16365.2	30.513	390	184	15	337	709	135	454	6.16e-26	112
Msa0686350	AT2G16365.6	30.513	390	184	15	337	709	135	454	6.16e-26	112
Msa0686350	AT2G16365.4	30.570	386	189	14	337	709	135	454	1.37e-25	113
Msa0686350	AT2G16365.1	30.570	386	189	14	337	709	135	454	1.88e-25	112
Msa0686350	AT2G16365.3	30.570	386	189	14	337	709	135	454	1.88e-25	112
Msa0686350	AT4G34550.2	29.075	227	132	8	488	709	76	278	3.25e-11	65.1
Msa0686350	AT4G34550.1	29.075	227	132	8	488	709	76	278	3.25e-11	65.1

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Find 193 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTCCTGTGATGGTT+TGG	0.417387	4_4:+50801543	Msa0686350:CDS
AAAAGTGGTCTGTGTTGTTG+TGG	0.582807	4_4:+50798766	Msa0686350:five_prime_UTR
AAAATCTGGCAGTAGCTCTT+TGG	0.312890	4_4:+50801055	Msa0686350:CDS
AAAATTGAAGAATGCAAGCT+TGG	0.443223	4_4:+50799085	Msa0686350:CDS
AAACTTCAATAAAAGAGTGT+CGG	0.607247	4_4:+50799309	Msa0686350:CDS
AAAGAACTGATGTGTTGTCT+GGG	0.603862	4_4:-50799900	None:intergenic
AAAGAGAGCAAATCCAGTAT+GGG	0.582674	4_4:+50801209	Msa0686350:CDS
AAATCAACTTGTTTATAACT+AGG	0.429380	4_4:-50802182	None:intergenic
AAATCTGGCAGTAGCTCTTT+GGG	0.392253	4_4:+50801056	Msa0686350:CDS
AACAAATTCAAGGGTCCAAG+TGG	0.489611	4_4:-50801712	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGAAGAATGCAAGCT+TGG	+	chr4_4:50799085-50799104	Msa0686350:CDS	30.0%
ACGTGATATAAGAAATGACT+TGG	-	chr4_4:50799114-50799133	None:intergenic	30.0%
CGTCTTTCTCAAAACAAAAA+TGG	+	chr4_4:50799131-50799150	Msa0686350:CDS	30.0%
ATTCTTCTGCTGAATCTATA+CGG	-	chr4_4:50799856-50799875	None:intergenic	30.0%
TTACATGAGAATAATCTTGC+AGG	+	chr4_4:50800148-50800167	Msa0686350:CDS	30.0%
GTATATATGCACAAAGTGAA+AGG	+	chr4_4:50800170-50800189	Msa0686350:intron	30.0%
TTCTATATTGCAGAGCTTTA+AGG	-	chr4_4:50800215-50800234	None:intergenic	30.0%
AGTTCCATTGCTATCTAATA+AGG	+	chr4_4:50800402-50800421	Msa0686350:CDS	30.0%
TCATATGAATGCTTAAGCAA+CGG	-	chr4_4:50800483-50800502	None:intergenic	30.0%
CAACACTCATCATAATTAAC+AGG	-	chr4_4:50800590-50800609	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	50798309	50802245	50798309	ID=Msa0686350;Name=Msa0686350
chr4_4	mRNA	50798309	50802245	50798309	ID=Msa0686350-mRNA-1;Parent=Msa0686350;Name=Msa0686350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=161\|1\|1\|1\|0.5\|0.2\|5\|589\|709
chr4_4	exon	50798309	50798380	50798309	ID=Msa0686350-mRNA-1:exon:13047;Parent=Msa0686350-mRNA-1
chr4_4	exon	50798733	50800169	50798733	ID=Msa0686350-mRNA-1:exon:13048;Parent=Msa0686350-mRNA-1
chr4_4	exon	50800398	50800423	50800398	ID=Msa0686350-mRNA-1:exon:13049;Parent=Msa0686350-mRNA-1
chr4_4	exon	50800828	50801819	50800828	ID=Msa0686350-mRNA-1:exon:13050;Parent=Msa0686350-mRNA-1
chr4_4	exon	50801893	50802245	50801893	ID=Msa0686350-mRNA-1:exon:13051;Parent=Msa0686350-mRNA-1
chr4_4	five_prime_UTR	50798309	50798380	50798309	ID=Msa0686350-mRNA-1:five_prime_utr;Parent=Msa0686350-mRNA-1
chr4_4	five_prime_UTR	50798733	50798821	50798733	ID=Msa0686350-mRNA-1:five_prime_utr;Parent=Msa0686350-mRNA-1
chr4_4	CDS	50798822	50800169	50798822	ID=Msa0686350-mRNA-1:cds;Parent=Msa0686350-mRNA-1
chr4_4	CDS	50800398	50800423	50800398	ID=Msa0686350-mRNA-1:cds;Parent=Msa0686350-mRNA-1
chr4_4	CDS	50800828	50801583	50800828	ID=Msa0686350-mRNA-1:cds;Parent=Msa0686350-mRNA-1
chr4_4	three_prime_UTR	50801584	50801819	50801584	ID=Msa0686350-mRNA-1:three_prime_utr;Parent=Msa0686350-mRNA-1
chr4_4	three_prime_UTR	50801893	50802245	50801893	ID=Msa0686350-mRNA-1:three_prime_utr;Parent=Msa0686350-mRNA-1

Gene Sequence

>Msa0686350

ATGATGCCGGATGAGATTGCTGCTCGTGCCTACCGTGATGGCGAGAGAGTGGATGCTGCAATGCATGGTTATAGTTACTTGTCACCATGGATGGCTCATTGGAAGCACACAAGTTACAAGCCAACAAAACAAAACACTGGTTTGAGTGTTGGTTGTGAGGTTAATGAACTGAAAGAAGAGAGTGATGTTGAGAAGCGTGATTTACTTGGTGGGTCGGACGTTGGATCAGATAGTTCAATGCATGTTGATGAGGAGGAGATTGGAAAATTGAAGAATGCAAGCTTGGATTCCAAGTCATTTCTTATATCACGTCTTTCTCAAAACAAAAATGGAAGAGTGCCTTTGCAGAGAGAAGAGAAGAATGTTTTGCACGAGGGAGATGGAAAATCTGGAAAAGAATCAAGCTTTGGAGGTGATAATGTTTTTATCAACAGAGGTGGGGATCACTTGTTGCCATTAACATCTTCACAAGCTGCTCCTAAAATAGAAACTTCAATAAAAGAGTGTCGGTTATTGTCTCAAGGAGTGCCGGTGAAATCCTTGTGTGCTGCTGACCTGAAGAACTTGGCTCTTTCAACGTCATTGTGGAACAACTTGGTAAACTCAGCTTCAGACATAGTGCCTACAAATGGACGTGAAAAAGGAAAATCTGTGATGCCTCAACTCACAGGTGGATCGAGCTACAATTCAGCATCCCAAGAGCATTACGCAGGCACTAAATATCACAGTTATTCTTCTCTCCGTGTCCCTGAGAAGCAGATGAGTAGCTTGTTAGACTCTCAAAGACCTTCCCGTTCAAAATTGTTGCAAGGCAGTTTTCCTCGTTTCCCGCATAATCCAATAGCTGGTAATGATGATGATGGACTATATGCTGTTCGTAGTCAGCACCACAAGATTCAAAATTTAATTGCTAATCCAGACATTACAAACCAGACTGCATTCTTGGAGTCAACTAAACCACATTACGGTGTAAGCTCTTCGGCGCGAGGACCACGTTCTGCTTATGGTGTGAAGGGTGCAAAAATTTACGCCCGTATAGATTCAGCAGAAGAATTATCACGAGGTCATCCCAATATTTCCCAGACAACACATCAGTTCTTTAGCGAATCAATGGCACCTACCAAAATTAAAGGAAATAATTTCAATGAGATTCTTGATTTATCTCCGACTCCACCCGCTAGTGACCGTACTGTGGAATGTCCGAAGCTGGAAACTCTAGGGAGCTCCAGAAAGAGTGAAGAAAACGAAAATATCCACGATTTGAAATGTCCGACAAGCCCGGCGAATGAGTCATCTCCTGAACCCAACACTATGGACATTGATACTTTACATGAGAATAATCTTGCAGGTGTAGTTCCATTGCTATCTAATAAGTTCTCCAAGGATAGTCAGAACTCGCTCTCAACTCAAGGTGCAACAATTTCAGCTAGAGGAAAAAACCTGGAGAAGTCAGTGAATACAACACTACCAGATATAAATAAAAGGCCTCATGAGCTTCTCACTCTGGCAAGTCCCATGGTTGACAGGGAGACTAGTACATCAAGAACTCACAGCCTTGATGTTGAACAACTTTTTCCTCACGTAAACGGACATGCAAGGTCAAAATCTGGCAGTAGCTCTTTGGGATCAGATCCAAGTAGCAGATGGGTTAAACGACTCAAGTTATGCACATTGGACTCTGGTCATGGTACCAAGAGTGAAAATATTGGAGAACCTTCACATGTAAAATCAACAAATATTTTCAGCAAAATTATGAAAGAGAGCAAATCCAGTATGGGAGCCGAAACAGTATATCACGCTGAAGGAATAACTGTTCCAGATCCACCCCCAAAAGTATTATCAAACGACGAGTCCTCTTTTACTGAAGCGAAGGAAACTGTAGATATTACACTTTCACATCCTTGGATTCAGAGATGGAGTCATAATCGGGCTGCATGTCCCAAAAAGATGCATGAATCAGTGGAGAATCATGAACCAAAGTCTTCGAACAGTGTGAAAGAACAGTTTAAAAACAAGCAGTTTCCAAGCATTGCTGCCATGGCCCTGATGGGAAAGGCAATGAATTGTTTGAATCCATCTGAGCTTACGAAAAAGGGTCCTGTGATGGTTTGGAATACGAAGAGACTTTGA

Protein sequence

>Msa0686350

MMPDEIAARAYRDGERVDAAMHGYSYLSPWMAHWKHTSYKPTKQNTGLSVGCEVNELKEESDVEKRDLLGGSDVGSDSSMHVDEEEIGKLKNASLDSKSFLISRLSQNKNGRVPLQREEKNVLHEGDGKSGKESSFGGDNVFINRGGDHLLPLTSSQAAPKIETSIKECRLLSQGVPVKSLCAADLKNLALSTSLWNNLVNSASDIVPTNGREKGKSVMPQLTGGSSYNSASQEHYAGTKYHSYSSLRVPEKQMSSLLDSQRPSRSKLLQGSFPRFPHNPIAGNDDDGLYAVRSQHHKIQNLIANPDITNQTAFLESTKPHYGVSSSARGPRSAYGVKGAKIYARIDSAEELSRGHPNISQTTHQFFSESMAPTKIKGNNFNEILDLSPTPPASDRTVECPKLETLGSSRKSEENENIHDLKCPTSPANESSPEPNTMDIDTLHENNLAGVVPLLSNKFSKDSQNSLSTQGATISARGKNLEKSVNTTLPDINKRPHELLTLASPMVDRETSTSRTHSLDVEQLFPHVNGHARSKSGSSSLGSDPSSRWVKRLKLCTLDSGHGTKSENIGEPSHVKSTNIFSKIMKESKSSMGAETVYHAEGITVPDPPPKVLSNDESSFTEAKETVDITLSHPWIQRWSHNRAACPKKMHESVENHEPKSSNSVKEQFKNKQFPSIAAMALMGKAMNCLNPSELTKKGPVMVWNTKRL*