Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606110 | XP_024636124.1 | 93.434 | 198 | 13 | 0 | 1 | 198 | 4 | 201 | 3.31e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606110 | sp|Q9SJT8|SRS3_ARATH | 50.758 | 132 | 49 | 2 | 11 | 137 | 3 | 123 | 9.12e-40 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0606110 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606110 | Msa1339180 | 0.802409 | 5.688087e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606110 | MtrunA17_Chr4g0035591 | 93.434 | 198 | 13 | 0 | 1 | 198 | 4 | 201 | 3.04e-122 | 343 |
| Msa0606110 | MtrunA17_Chr8g0372461 | 50.000 | 136 | 59 | 2 | 13 | 139 | 117 | 252 | 4.46e-42 | 144 |
| Msa0606110 | MtrunA17_Chr3g0142171 | 50.345 | 145 | 52 | 4 | 14 | 138 | 83 | 227 | 2.77e-41 | 141 |
| Msa0606110 | MtrunA17_Chr5g0404781 | 45.283 | 159 | 56 | 4 | 15 | 142 | 98 | 256 | 1.92e-38 | 134 |
| Msa0606110 | MtrunA17_Chr1g0155791 | 42.568 | 148 | 60 | 2 | 15 | 137 | 120 | 267 | 1.83e-34 | 124 |
| Msa0606110 | MtrunA17_Chr5g0441921 | 38.562 | 153 | 62 | 2 | 17 | 137 | 124 | 276 | 1.46e-29 | 111 |
| Msa0606110 | MtrunA17_Chr8g0353111 | 36.571 | 175 | 73 | 3 | 6 | 142 | 113 | 287 | 1.82e-27 | 105 |
| Msa0606110 | MtrunA17_Chr0c01g0489181 | 86.275 | 51 | 7 | 0 | 1 | 51 | 51 | 101 | 3.60e-26 | 97.1 |
| Msa0606110 | MtrunA17_Chr3g0082511 | 36.076 | 158 | 69 | 4 | 17 | 142 | 134 | 291 | 4.16e-24 | 97.1 |
| Msa0606110 | MtrunA17_Chr2g0281741 | 86.364 | 44 | 6 | 0 | 8 | 51 | 141 | 184 | 3.53e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606110 | AT2G21400.1 | 50.758 | 132 | 49 | 2 | 11 | 137 | 3 | 123 | 9.27e-41 | 136 |
| Msa0606110 | AT2G21400.3 | 50.758 | 132 | 49 | 2 | 11 | 137 | 4 | 124 | 9.65e-41 | 136 |
| Msa0606110 | AT2G21400.4 | 49.265 | 136 | 60 | 2 | 11 | 137 | 3 | 138 | 1.99e-39 | 133 |
| Msa0606110 | AT2G21400.2 | 49.265 | 136 | 60 | 2 | 11 | 137 | 4 | 139 | 2.07e-39 | 133 |
| Msa0606110 | AT1G75520.1 | 37.327 | 217 | 87 | 6 | 14 | 193 | 122 | 326 | 8.76e-37 | 131 |
| Msa0606110 | AT5G66350.3 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 1.38e-36 | 130 |
| Msa0606110 | AT5G66350.2 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 1.68e-36 | 130 |
| Msa0606110 | AT5G66350.1 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 1.79e-36 | 130 |
| Msa0606110 | AT3G51060.1 | 36.620 | 213 | 98 | 6 | 15 | 190 | 142 | 354 | 5.71e-36 | 129 |
| Msa0606110 | AT2G18120.2 | 43.885 | 139 | 68 | 3 | 15 | 143 | 70 | 208 | 5.29e-35 | 123 |
| Msa0606110 | AT2G18120.1 | 43.262 | 141 | 68 | 3 | 15 | 143 | 70 | 210 | 2.38e-34 | 121 |
| Msa0606110 | AT1G19790.2 | 39.444 | 180 | 75 | 4 | 15 | 160 | 117 | 296 | 1.65e-32 | 120 |
| Msa0606110 | AT1G19790.1 | 39.444 | 180 | 75 | 4 | 15 | 160 | 117 | 296 | 1.65e-32 | 120 |
| Msa0606110 | AT4G36260.1 | 40.994 | 161 | 53 | 4 | 15 | 139 | 92 | 246 | 6.22e-32 | 117 |
| Msa0606110 | AT5G12330.1 | 34.518 | 197 | 84 | 4 | 17 | 176 | 112 | 300 | 6.53e-28 | 107 |
| Msa0606110 | AT5G12330.2 | 34.518 | 197 | 84 | 4 | 17 | 176 | 112 | 300 | 6.53e-28 | 107 |
| Msa0606110 | AT5G12330.4 | 34.518 | 197 | 84 | 4 | 17 | 176 | 199 | 387 | 1.05e-27 | 108 |
| Msa0606110 | AT3G54430.1 | 34.848 | 132 | 77 | 3 | 17 | 139 | 41 | 172 | 1.87e-20 | 84.7 |
| Msa0606110 | AT5G33210.2 | 65.957 | 47 | 16 | 0 | 15 | 61 | 15 | 61 | 4.48e-19 | 79.0 |
| Msa0606110 | AT5G12330.3 | 62.000 | 50 | 19 | 0 | 17 | 66 | 112 | 161 | 2.02e-18 | 80.1 |
| Msa0606110 | AT5G33210.1 | 65.957 | 47 | 16 | 0 | 15 | 61 | 50 | 96 | 3.03e-18 | 78.6 |
Find 44 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATCCATTGCCATCTTTC+AGG | 0.185899 | 4_2:-52209403 | Msa0606110:CDS |
| AAGATGTATTCAACACAATT+AGG | 0.212765 | 4_2:-52210254 | Msa0606110:CDS |
| AGGGAAAGAAGAAGTGTTAA+AGG | 0.254491 | 4_2:-52210234 | Msa0606110:CDS |
| AATTTCTACACTTGTTTGAT+AGG | 0.288184 | 4_2:+52209622 | None:intergenic |
| TATCAAACAAGTGTAGAAAT+TGG | 0.319031 | 4_2:-52209620 | Msa0606110:CDS |
| ACCACCTTCATGAACATAAA+AGG | 0.327971 | 4_2:-52210046 | Msa0606110:CDS |
| GTATTGAAGCTTTGTTGATC+AGG | 0.373732 | 4_2:+52209560 | None:intergenic |
| ATGTGTTCAGGTGCGCTCTA+TGG | 0.373967 | 4_2:-52209666 | Msa0606110:CDS |
| ATGCACAATCCTTCTTTGCT+TGG | 0.390646 | 4_2:+52210186 | None:intergenic |
| AGTGGTATTCTTTATGATCA+AGG | 0.401384 | 4_2:-52209584 | Msa0606110:CDS |
| CTTGGATTCCTGCCGATAGA+AGG | 0.408141 | 4_2:-52210100 | Msa0606110:CDS |
| AGATGTATTCAACACAATTA+GGG | 0.426718 | 4_2:-52210253 | Msa0606110:CDS |
| GGCCACATTGACATGTGTTC+AGG | 0.436853 | 4_2:-52209678 | Msa0606110:CDS |
| GGGAAAGAAGAAGTGTTAAA+GGG | 0.452664 | 4_2:-52210233 | Msa0606110:CDS |
| ATTGGAGGACATGTATTTAG+TGG | 0.464916 | 4_2:-52209602 | Msa0606110:CDS |
| CTGTGGGAACCAAGCAAAGA+AGG | 0.482489 | 4_2:-52210195 | Msa0606110:CDS |
| GATGGCAATGGATGCGGTGG+AGG | 0.491036 | 4_2:+52209410 | None:intergenic |
| GGCATACCGGGCCTGAAAGA+TGG | 0.493287 | 4_2:+52209392 | None:intergenic |
| CATTCTGTGACGCCTTCTAT+CGG | 0.499159 | 4_2:+52210088 | None:intergenic |
| AAGTGCTTCTGATATGTGTT+TGG | 0.503819 | 4_2:+52210120 | None:intergenic |
| TATTGAAGCTTTGTTGATCA+GGG | 0.517194 | 4_2:+52209561 | None:intergenic |
| CTGTGACGCCTTCTATCGGC+AGG | 0.519090 | 4_2:+52210092 | None:intergenic |
| GGACGAAACGGTTAATGAAA+CGG | 0.523314 | 4_2:-52209645 | Msa0606110:CDS |
| TCCAGCTGTTACAAGTTCCA+TGG | 0.525576 | 4_2:-52209699 | Msa0606110:CDS |
| CCATTGCCATCTTTCAGGCC+CGG | 0.534404 | 4_2:-52209398 | None:intergenic |
| GCAAGTGCAAGTGCAACTAT+AGG | 0.535841 | 4_2:-52209464 | Msa0606110:CDS |
| GCCATGGAACTTGTAACAGC+TGG | 0.538874 | 4_2:+52209698 | None:intergenic |
| CTGAAAGATGGCAATGGATG+CGG | 0.543278 | 4_2:+52209404 | None:intergenic |
| GTCTGAAATGTCAAGACTGT+GGG | 0.561427 | 4_2:-52210211 | Msa0606110:CDS |
| CGATAGAAGGCGTCACAGAA+TGG | 0.568956 | 4_2:-52210087 | Msa0606110:CDS |
| GCAATCCACACAGGTGATGA+TGG | 0.569958 | 4_2:-52209488 | Msa0606110:CDS |
| CAAACAAGTGTAGAAATTGG+AGG | 0.570503 | 4_2:-52209617 | Msa0606110:CDS |
| AACACATGTCAATGTGGCCA+TGG | 0.579628 | 4_2:+52209682 | None:intergenic |
| AGAAGGATTGTGCATACTCA+AGG | 0.587247 | 4_2:-52210178 | Msa0606110:CDS |
| GGTGCGCTCTATGGACGAAA+CGG | 0.590105 | 4_2:-52209657 | Msa0606110:CDS |
| CCGGGCCTGAAAGATGGCAA+TGG | 0.618050 | 4_2:+52209398 | None:intergenic |
| AGTAGTAATGCAATCCACAC+AGG | 0.618793 | 4_2:-52209497 | Msa0606110:CDS |
| TGAAGGTGGTGCTGATCAGA+AGG | 0.627301 | 4_2:+52210059 | None:intergenic |
| AAACACATATCAGAAGCACT+TGG | 0.635365 | 4_2:-52210118 | Msa0606110:CDS |
| AAAGATGGCAATGGATGCGG+TGG | 0.637766 | 4_2:+52209407 | None:intergenic |
| GGTCTGAAATGTCAAGACTG+TGG | 0.643818 | 4_2:-52210212 | Msa0606110:CDS |
| CACCTGAACACATGTCAATG+TGG | 0.680012 | 4_2:+52209676 | None:intergenic |
| GGTGGTGCTGATCAGAAGGA+TGG | 0.685704 | 4_2:+52210063 | None:intergenic |
| TTGCACCATCATCACCTGTG+TGG | 0.692440 | 4_2:+52209483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTAAAATCAGATTGA+AGG | + | chr4_2:52209830-52209849 | None:intergenic | 15.0% |
| !!! | TAATTTTAAAATCAGATTGA+AGG | + | chr4_2:52209830-52209849 | None:intergenic | 15.0% |
| !! | CTGAAATATTAGACATATTA+TGG | + | chr4_2:52209913-52209932 | None:intergenic | 20.0% |
| !! | CATAATATGTCTAATATTTC+AGG | - | chr4_2:52209911-52209930 | Msa0606110:intron | 20.0% |
| !! | CTGAAATATTAGACATATTA+TGG | + | chr4_2:52209913-52209932 | None:intergenic | 20.0% |
| !! | CATAATATGTCTAATATTTC+AGG | - | chr4_2:52209911-52209930 | Msa0606110:intron | 20.0% |
| ! | CAGAAGAAAGATACTATTTA+GGG | + | chr4_2:52209714-52209733 | None:intergenic | 25.0% |
| ! | ACAGAAGAAAGATACTATTT+AGG | + | chr4_2:52209715-52209734 | None:intergenic | 25.0% |
| !!! | TAGTCTTTTTTCTTTTCCTA+CGG | - | chr4_2:52209848-52209867 | Msa0606110:intron | 25.0% |
| ! | TATTATGGTTGTAATTAGGA+TGG | + | chr4_2:52209898-52209917 | None:intergenic | 25.0% |
| ! | GACATATTATGGTTGTAATT+AGG | + | chr4_2:52209902-52209921 | None:intergenic | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | + | chr4_2:52210032-52210051 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | - | chr4_2:52210031-52210050 | Msa0606110:CDS | 25.0% |
| ! | CAGAAGAAAGATACTATTTA+GGG | + | chr4_2:52209714-52209733 | None:intergenic | 25.0% |
| ! | ACAGAAGAAAGATACTATTT+AGG | + | chr4_2:52209715-52209734 | None:intergenic | 25.0% |
| !!! | TAGTCTTTTTTCTTTTCCTA+CGG | - | chr4_2:52209848-52209867 | Msa0606110:intron | 25.0% |
| ! | TATTATGGTTGTAATTAGGA+TGG | + | chr4_2:52209898-52209917 | None:intergenic | 25.0% |
| ! | GACATATTATGGTTGTAATT+AGG | + | chr4_2:52209902-52209921 | None:intergenic | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | + | chr4_2:52210032-52210051 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | - | chr4_2:52210031-52210050 | Msa0606110:CDS | 25.0% |
| GTACCTCTTGTACTTATTAT+TGG | + | chr4_2:52209874-52209893 | None:intergenic | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | - | chr4_2:52210067-52210086 | Msa0606110:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | + | chr4_2:52210093-52210112 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | + | chr4_2:52210125-52210144 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | + | chr4_2:52210126-52210145 | None:intergenic | 30.0% |
| CCTAATTGTGTTGAATACAT+GGG | + | chr4_2:52209400-52209419 | None:intergenic | 30.0% | |
| GTACCTCTTGTACTTATTAT+TGG | + | chr4_2:52209874-52209893 | None:intergenic | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | - | chr4_2:52210067-52210086 | Msa0606110:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | + | chr4_2:52210093-52210112 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | + | chr4_2:52210125-52210144 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | + | chr4_2:52210126-52210145 | None:intergenic | 30.0% |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | - | chr4_2:52209417-52209436 | Msa0606110:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | - | chr4_2:52209418-52209437 | Msa0606110:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | - | chr4_2:52209499-52209518 | Msa0606110:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | + | chr4_2:52209534-52209553 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | - | chr4_2:52209533-52209552 | Msa0606110:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | - | chr4_2:52209605-52209624 | Msa0606110:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | + | chr4_2:52209612-52209631 | None:intergenic | 35.0% |
| TTGTACTTATTATTGGCCGT+AGG | + | chr4_2:52209867-52209886 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | - | chr4_2:52210034-52210053 | Msa0606110:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | - | chr4_2:52210049-52210068 | Msa0606110:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | + | chr4_2:52210094-52210113 | None:intergenic | 35.0% |
| CCCTAATTGTGTTGAATACA+TGG | + | chr4_2:52209401-52209420 | None:intergenic | 35.0% | |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | - | chr4_2:52209417-52209436 | Msa0606110:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | - | chr4_2:52209418-52209437 | Msa0606110:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | - | chr4_2:52209499-52209518 | Msa0606110:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | + | chr4_2:52209534-52209553 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | - | chr4_2:52209533-52209552 | Msa0606110:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | - | chr4_2:52209605-52209624 | Msa0606110:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | + | chr4_2:52209612-52209631 | None:intergenic | 35.0% |
| TTGTACTTATTATTGGCCGT+AGG | + | chr4_2:52209867-52209886 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | - | chr4_2:52210034-52210053 | Msa0606110:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | - | chr4_2:52210049-52210068 | Msa0606110:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | + | chr4_2:52210094-52210113 | None:intergenic | 35.0% |
| ! | GTCTGAAATGTCAAGACTGT+GGG | - | chr4_2:52209440-52209459 | Msa0606110:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | + | chr4_2:52209468-52209487 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | - | chr4_2:52209473-52209492 | Msa0606110:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | + | chr4_2:52209609-52209628 | None:intergenic | 40.0% |
| CGGCCAATAATAAGTACAAG+AGG | - | chr4_2:52209868-52209887 | Msa0606110:intron | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | - | chr4_2:52210006-52210025 | Msa0606110:intron | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | - | chr4_2:52210154-52210173 | Msa0606110:CDS | 40.0% | |
| ! | GTCTGAAATGTCAAGACTGT+GGG | - | chr4_2:52209440-52209459 | Msa0606110:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | + | chr4_2:52209468-52209487 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | - | chr4_2:52209473-52209492 | Msa0606110:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | + | chr4_2:52209609-52209628 | None:intergenic | 40.0% |
| CGGCCAATAATAAGTACAAG+AGG | - | chr4_2:52209868-52209887 | Msa0606110:intron | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | - | chr4_2:52210006-52210025 | Msa0606110:intron | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | - | chr4_2:52210154-52210173 | Msa0606110:CDS | 40.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | - | chr4_2:52209439-52209458 | Msa0606110:CDS | 45.0% |
| CATTCTGTGACGCCTTCTAT+CGG | + | chr4_2:52209566-52209585 | None:intergenic | 45.0% | |
| TCCAGCTGTTACAAGTTCCA+TGG | - | chr4_2:52209952-52209971 | Msa0606110:intron | 45.0% | |
| AACACATGTCAATGTGGCCA+TGG | + | chr4_2:52209972-52209991 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | + | chr4_2:52209978-52209997 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | - | chr4_2:52210187-52210206 | Msa0606110:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | + | chr4_2:52210250-52210269 | None:intergenic | 45.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | - | chr4_2:52209439-52209458 | Msa0606110:CDS | 45.0% |
| CATTCTGTGACGCCTTCTAT+CGG | + | chr4_2:52209566-52209585 | None:intergenic | 45.0% | |
| TCCAGCTGTTACAAGTTCCA+TGG | - | chr4_2:52209952-52209971 | Msa0606110:intron | 45.0% | |
| AACACATGTCAATGTGGCCA+TGG | + | chr4_2:52209972-52209991 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | + | chr4_2:52209978-52209997 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | - | chr4_2:52210187-52210206 | Msa0606110:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | + | chr4_2:52210250-52210269 | None:intergenic | 45.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | - | chr4_2:52209456-52209475 | Msa0606110:CDS | 50.0% | |
| CTTGGATTCCTGCCGATAGA+AGG | - | chr4_2:52209551-52209570 | Msa0606110:CDS | 50.0% | |
| !! | CGATAGAAGGCGTCACAGAA+TGG | - | chr4_2:52209564-52209583 | Msa0606110:CDS | 50.0% |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | + | chr4_2:52209595-52209614 | None:intergenic | 50.0% |
| GCCATGGAACTTGTAACAGC+TGG | + | chr4_2:52209956-52209975 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | - | chr4_2:52209973-52209992 | Msa0606110:intron | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | - | chr4_2:52209985-52210004 | Msa0606110:intron | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | - | chr4_2:52210163-52210182 | Msa0606110:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | + | chr4_2:52210171-52210190 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | + | chr4_2:52210247-52210266 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | - | chr4_2:52210248-52210267 | Msa0606110:CDS | 50.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | - | chr4_2:52209456-52209475 | Msa0606110:CDS | 50.0% | |
| CTTGGATTCCTGCCGATAGA+AGG | - | chr4_2:52209551-52209570 | Msa0606110:CDS | 50.0% | |
| !! | CGATAGAAGGCGTCACAGAA+TGG | - | chr4_2:52209564-52209583 | Msa0606110:CDS | 50.0% |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | + | chr4_2:52209595-52209614 | None:intergenic | 50.0% |
| GCCATGGAACTTGTAACAGC+TGG | + | chr4_2:52209956-52209975 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | - | chr4_2:52209973-52209992 | Msa0606110:intron | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | - | chr4_2:52209985-52210004 | Msa0606110:intron | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | - | chr4_2:52210163-52210182 | Msa0606110:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | + | chr4_2:52210171-52210190 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | + | chr4_2:52210247-52210266 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | - | chr4_2:52210248-52210267 | Msa0606110:CDS | 50.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | + | chr4_2:52209591-52209610 | None:intergenic | 55.0% |
| GGTGCGCTCTATGGACGAAA+CGG | - | chr4_2:52209994-52210013 | Msa0606110:intron | 55.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | + | chr4_2:52209591-52209610 | None:intergenic | 55.0% |
| GGTGCGCTCTATGGACGAAA+CGG | - | chr4_2:52209994-52210013 | Msa0606110:intron | 55.0% | |
| CTGTGACGCCTTCTATCGGC+AGG | + | chr4_2:52209562-52209581 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | + | chr4_2:52210244-52210263 | None:intergenic | 60.0% | |
| CTGTGACGCCTTCTATCGGC+AGG | + | chr4_2:52209562-52209581 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | + | chr4_2:52210244-52210263 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 52209400 | 52210273 | 52209400 | ID=Msa0606110;Name=Msa0606110 |
| chr4_2 | mRNA | 52209400 | 52210273 | 52209400 | ID=Msa0606110-mRNA-1;Parent=Msa0606110;Name=Msa0606110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0|1|1|0.5|2|0|198 |
| chr4_2 | exon | 52210021 | 52210273 | 52210021 | ID=Msa0606110-mRNA-1:exon:12676;Parent=Msa0606110-mRNA-1 |
| chr4_2 | exon | 52209400 | 52209740 | 52209400 | ID=Msa0606110-mRNA-1:exon:12675;Parent=Msa0606110-mRNA-1 |
| chr4_2 | CDS | 52210021 | 52210273 | 52210021 | ID=Msa0606110-mRNA-1:cds;Parent=Msa0606110-mRNA-1 |
| chr4_2 | CDS | 52209400 | 52209740 | 52209400 | ID=Msa0606110-mRNA-1:cds;Parent=Msa0606110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
