Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339180 | XP_024636124.1 | 92.965 | 199 | 13 | 1 | 1 | 199 | 4 | 201 | 3.09e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339180 | sp|Q9SJT8|SRS3_ARATH | 51.111 | 135 | 45 | 3 | 11 | 138 | 3 | 123 | 7.48e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339180 | A0A396I9B8 | 92.965 | 199 | 13 | 1 | 1 | 199 | 4 | 201 | 1.47e-116 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1339180 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606110 | Msa1339180 | 0.802409 | 5.688087e-49 | -8.615850e-47 |
| Msa0647060 | Msa1339180 | 0.841337 | 5.051320e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339180 | MtrunA17_Chr4g0035591 | 92.965 | 199 | 13 | 1 | 1 | 199 | 4 | 201 | 2.84e-120 | 339 |
| Msa1339180 | MtrunA17_Chr8g0372461 | 49.265 | 136 | 61 | 2 | 13 | 140 | 117 | 252 | 3.85e-41 | 142 |
| Msa1339180 | MtrunA17_Chr3g0142171 | 50.000 | 146 | 52 | 5 | 14 | 139 | 83 | 227 | 1.90e-39 | 136 |
| Msa1339180 | MtrunA17_Chr5g0404781 | 45.283 | 159 | 57 | 4 | 15 | 143 | 98 | 256 | 1.83e-38 | 134 |
| Msa1339180 | MtrunA17_Chr1g0155791 | 41.892 | 148 | 62 | 2 | 15 | 138 | 120 | 267 | 1.73e-33 | 122 |
| Msa1339180 | MtrunA17_Chr5g0441921 | 39.216 | 153 | 62 | 3 | 17 | 138 | 124 | 276 | 6.45e-28 | 107 |
| Msa1339180 | MtrunA17_Chr8g0353111 | 36.571 | 175 | 74 | 3 | 6 | 143 | 113 | 287 | 1.47e-27 | 106 |
| Msa1339180 | MtrunA17_Chr0c01g0489181 | 86.275 | 51 | 7 | 0 | 1 | 51 | 51 | 101 | 3.62e-26 | 97.1 |
| Msa1339180 | MtrunA17_Chr3g0082511 | 34.810 | 158 | 72 | 4 | 17 | 143 | 134 | 291 | 5.26e-24 | 96.7 |
| Msa1339180 | MtrunA17_Chr2g0281741 | 86.364 | 44 | 6 | 0 | 8 | 51 | 141 | 184 | 4.11e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339180 | AT2G21400.4 | 49.265 | 136 | 61 | 2 | 11 | 138 | 3 | 138 | 7.43e-40 | 134 |
| Msa1339180 | AT2G21400.3 | 51.111 | 135 | 45 | 3 | 11 | 138 | 4 | 124 | 7.58e-40 | 134 |
| Msa1339180 | AT2G21400.1 | 51.111 | 135 | 45 | 3 | 11 | 138 | 3 | 123 | 7.60e-40 | 134 |
| Msa1339180 | AT2G21400.2 | 49.265 | 136 | 61 | 2 | 11 | 138 | 4 | 139 | 7.90e-40 | 134 |
| Msa1339180 | AT1G75520.1 | 36.866 | 217 | 89 | 5 | 14 | 194 | 122 | 326 | 1.12e-36 | 130 |
| Msa1339180 | AT5G66350.3 | 40.244 | 164 | 75 | 3 | 17 | 161 | 120 | 279 | 1.52e-35 | 127 |
| Msa1339180 | AT5G66350.2 | 40.244 | 164 | 75 | 3 | 17 | 161 | 120 | 279 | 1.83e-35 | 127 |
| Msa1339180 | AT5G66350.1 | 40.244 | 164 | 75 | 3 | 17 | 161 | 120 | 279 | 2.03e-35 | 127 |
| Msa1339180 | AT3G51060.1 | 36.150 | 213 | 100 | 6 | 15 | 191 | 142 | 354 | 2.91e-35 | 127 |
| Msa1339180 | AT2G18120.2 | 43.165 | 139 | 70 | 3 | 15 | 144 | 70 | 208 | 1.88e-34 | 122 |
| Msa1339180 | AT2G18120.1 | 42.553 | 141 | 70 | 3 | 15 | 144 | 70 | 210 | 7.02e-34 | 120 |
| Msa1339180 | AT1G19790.2 | 38.919 | 185 | 70 | 4 | 15 | 161 | 117 | 296 | 9.62e-32 | 117 |
| Msa1339180 | AT1G19790.1 | 38.919 | 185 | 70 | 4 | 15 | 161 | 117 | 296 | 9.62e-32 | 117 |
| Msa1339180 | AT4G36260.1 | 41.935 | 155 | 61 | 4 | 15 | 140 | 92 | 246 | 3.68e-31 | 115 |
| Msa1339180 | AT5G12330.1 | 32.995 | 197 | 88 | 4 | 17 | 177 | 112 | 300 | 6.41e-27 | 104 |
| Msa1339180 | AT5G12330.2 | 32.995 | 197 | 88 | 4 | 17 | 177 | 112 | 300 | 6.41e-27 | 104 |
| Msa1339180 | AT5G12330.4 | 32.995 | 197 | 88 | 4 | 17 | 177 | 199 | 387 | 9.47e-27 | 105 |
| Msa1339180 | AT3G54430.1 | 33.094 | 139 | 71 | 4 | 17 | 140 | 41 | 172 | 1.05e-20 | 85.5 |
| Msa1339180 | AT5G33210.2 | 66.667 | 45 | 15 | 0 | 15 | 59 | 15 | 59 | 2.48e-18 | 77.0 |
| Msa1339180 | AT5G33210.1 | 66.667 | 45 | 15 | 0 | 15 | 59 | 50 | 94 | 1.69e-17 | 76.6 |
| Msa1339180 | AT5G12330.3 | 61.702 | 47 | 18 | 0 | 17 | 63 | 112 | 158 | 3.62e-17 | 77.0 |
Find 45 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATCCATTGCCATCTTTC+AGG | 0.185899 | tig0003042:-42369 | Msa1339180:CDS |
| TTCTGATGAGTTCAAATTTC+CGG | 0.205380 | tig0003042:-42683 | Msa1339180:CDS |
| AAGATGTATTCAACACAATT+AGG | 0.212765 | tig0003042:-43252 | Msa1339180:CDS |
| AGGGAAAGAAGAAGTGTTAA+AGG | 0.254491 | tig0003042:-43232 | Msa1339180:CDS |
| AATTTCTACACTTGTTTGAT+AGG | 0.288184 | tig0003042:+42588 | None:intergenic |
| TATCAAACAAGTGTAGAAAT+TGG | 0.319031 | tig0003042:-42586 | Msa1339180:CDS |
| ACCACCTTCATGAACATAAA+AGG | 0.327971 | tig0003042:-43041 | Msa1339180:CDS |
| GTATTGAAGCTTTGTTGATC+AGG | 0.373732 | tig0003042:+42526 | None:intergenic |
| ATGTGTTCAGGTGCGCTCTA+TGG | 0.373967 | tig0003042:-42632 | Msa1339180:CDS |
| ATGCACAATCCTTCTTTGCT+TGG | 0.390646 | tig0003042:+43184 | None:intergenic |
| AGTGGTATTCTTTATGATCA+AGG | 0.401384 | tig0003042:-42550 | Msa1339180:CDS |
| AGATGTATTCAACACAATTA+GGG | 0.426718 | tig0003042:-43251 | Msa1339180:CDS |
| GGCCACATTGACATGTGTTC+AGG | 0.436853 | tig0003042:-42644 | Msa1339180:CDS |
| GGGAAAGAAGAAGTGTTAAA+GGG | 0.452664 | tig0003042:-43231 | Msa1339180:CDS |
| ATTGGAGGACATGTATTTAG+TGG | 0.464916 | tig0003042:-42568 | Msa1339180:CDS |
| TCTGTGACGCCTTCTTCTAT+CGG | 0.468832 | tig0003042:+43086 | None:intergenic |
| CTGTGGGAACCAAGCAAAGA+AGG | 0.482489 | tig0003042:-43193 | Msa1339180:CDS |
| GATGGCAATGGATGCGGTGG+AGG | 0.491036 | tig0003042:+42376 | None:intergenic |
| GGCATACCGGGCCTGAAAGA+TGG | 0.493287 | tig0003042:+42358 | None:intergenic |
| AAGTGCTTCTGATATGTGTT+TGG | 0.503819 | tig0003042:+43118 | None:intergenic |
| TGACGCCTTCTTCTATCGGC+AGG | 0.513236 | tig0003042:+43090 | None:intergenic |
| TATTGAAGCTTTGTTGATCA+GGG | 0.517194 | tig0003042:+42527 | None:intergenic |
| GGACGAAACGGTTAATGAAA+CGG | 0.523314 | tig0003042:-42611 | Msa1339180:CDS |
| CCATTGCCATCTTTCAGGCC+CGG | 0.534404 | tig0003042:-42364 | None:intergenic |
| GCAAGTGCAAGTGCAACTAT+AGG | 0.535841 | tig0003042:-42430 | Msa1339180:CDS |
| TAGAAGAAGGCGTCACAGAA+TGG | 0.541027 | tig0003042:-43082 | Msa1339180:CDS |
| CTGAAAGATGGCAATGGATG+CGG | 0.543278 | tig0003042:+42370 | None:intergenic |
| GGATTCCTGCCGATAGAAGA+AGG | 0.554055 | tig0003042:-43095 | Msa1339180:CDS |
| GCCATGGAACTCGTAACAGC+CGG | 0.560763 | tig0003042:+42664 | None:intergenic |
| GTCTGAAATGTCAAGACTGT+GGG | 0.561427 | tig0003042:-43209 | Msa1339180:CDS |
| TCCGGCTGTTACGAGTTCCA+TGG | 0.567211 | tig0003042:-42665 | Msa1339180:CDS |
| GCAATCCACACAGGTGATGA+TGG | 0.569958 | tig0003042:-42454 | Msa1339180:CDS |
| CAAACAAGTGTAGAAATTGG+AGG | 0.570503 | tig0003042:-42583 | Msa1339180:CDS |
| AACACATGTCAATGTGGCCA+TGG | 0.579628 | tig0003042:+42648 | None:intergenic |
| AGAAGGATTGTGCATACTCA+AGG | 0.587247 | tig0003042:-43176 | Msa1339180:CDS |
| GGTGCGCTCTATGGACGAAA+CGG | 0.590105 | tig0003042:-42623 | Msa1339180:CDS |
| CCGGGCCTGAAAGATGGCAA+TGG | 0.618050 | tig0003042:+42364 | None:intergenic |
| AGTAGTAATGCAATCCACAC+AGG | 0.618793 | tig0003042:-42463 | Msa1339180:CDS |
| TGAAGGTGGTGCTGATCAGA+AGG | 0.627301 | tig0003042:+43054 | None:intergenic |
| AAACACATATCAGAAGCACT+TGG | 0.635365 | tig0003042:-43116 | Msa1339180:CDS |
| AAAGATGGCAATGGATGCGG+TGG | 0.637766 | tig0003042:+42373 | None:intergenic |
| GGTCTGAAATGTCAAGACTG+TGG | 0.643818 | tig0003042:-43210 | Msa1339180:CDS |
| CACCTGAACACATGTCAATG+TGG | 0.680012 | tig0003042:+42642 | None:intergenic |
| GGTGGTGCTGATCAGAAGGA+TGG | 0.685704 | tig0003042:+43058 | None:intergenic |
| TTGCACCATCATCACCTGTG+TGG | 0.692440 | tig0003042:+42449 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTGAAATATTAGACATATTA+CGG | + | tig0003042:42911-42930 | None:intergenic | 20.0% |
| !! | CTGAAATATTAGACATATTA+CGG | + | tig0003042:42911-42930 | None:intergenic | 20.0% |
| !!! | AGGAAAAAAGGTACTATTTA+GGG | + | tig0003042:42681-42700 | None:intergenic | 25.0% |
| ! | AGAAACATATTGAGGAAAAA+AGG | + | tig0003042:42693-42712 | None:intergenic | 25.0% |
| ! | ATAACAGAAGAAACATATTG+AGG | + | tig0003042:42701-42720 | None:intergenic | 25.0% |
| ! | TTGAGCTAAAAGATCAAAAT+AGG | + | tig0003042:42790-42809 | None:intergenic | 25.0% |
| ! | CGTAATATGTCTAATATTTC+AGG | - | tig0003042:42909-42928 | Msa1339180:intron | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | + | tig0003042:43030-43049 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | - | tig0003042:43029-43048 | Msa1339180:CDS | 25.0% |
| !!! | AGGAAAAAAGGTACTATTTA+GGG | + | tig0003042:42681-42700 | None:intergenic | 25.0% |
| ! | AGAAACATATTGAGGAAAAA+AGG | + | tig0003042:42693-42712 | None:intergenic | 25.0% |
| ! | ATAACAGAAGAAACATATTG+AGG | + | tig0003042:42701-42720 | None:intergenic | 25.0% |
| ! | TTGAGCTAAAAGATCAAAAT+AGG | + | tig0003042:42790-42809 | None:intergenic | 25.0% |
| ! | CGTAATATGTCTAATATTTC+AGG | - | tig0003042:42909-42928 | Msa1339180:intron | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | + | tig0003042:43030-43049 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | - | tig0003042:43029-43048 | Msa1339180:CDS | 25.0% |
| !! | GAGGAAAAAAGGTACTATTT+AGG | + | tig0003042:42682-42701 | None:intergenic | 30.0% |
| GTATCCCTTGTACTTATTAT+TGG | + | tig0003042:42870-42889 | None:intergenic | 30.0% | |
| TTCTGATGAGTTCAAATTTC+CGG | - | tig0003042:42932-42951 | Msa1339180:intron | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | - | tig0003042:43065-43084 | Msa1339180:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | + | tig0003042:43091-43110 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | + | tig0003042:43123-43142 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | + | tig0003042:43124-43143 | None:intergenic | 30.0% |
| CCTAATTGTGTTGAATACAT+GGG | + | tig0003042:42366-42385 | None:intergenic | 30.0% | |
| !! | GAGGAAAAAAGGTACTATTT+AGG | + | tig0003042:42682-42701 | None:intergenic | 30.0% |
| GTATCCCTTGTACTTATTAT+TGG | + | tig0003042:42870-42889 | None:intergenic | 30.0% | |
| TTCTGATGAGTTCAAATTTC+CGG | - | tig0003042:42932-42951 | Msa1339180:intron | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | - | tig0003042:43065-43084 | Msa1339180:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | + | tig0003042:43091-43110 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | + | tig0003042:43123-43142 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | + | tig0003042:43124-43143 | None:intergenic | 30.0% |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | - | tig0003042:42383-42402 | Msa1339180:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | - | tig0003042:42384-42403 | Msa1339180:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | - | tig0003042:42465-42484 | Msa1339180:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | + | tig0003042:42500-42519 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | - | tig0003042:42499-42518 | Msa1339180:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | - | tig0003042:42574-42593 | Msa1339180:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | + | tig0003042:42581-42600 | None:intergenic | 35.0% |
| TTACGGTTGTGATTAGGATA+TGG | + | tig0003042:42894-42913 | None:intergenic | 35.0% | |
| GACATATTACGGTTGTGATT+AGG | + | tig0003042:42900-42919 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | - | tig0003042:43032-43051 | Msa1339180:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | - | tig0003042:43047-43066 | Msa1339180:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | + | tig0003042:43092-43111 | None:intergenic | 35.0% |
| CCCTAATTGTGTTGAATACA+TGG | + | tig0003042:42367-42386 | None:intergenic | 35.0% | |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | - | tig0003042:42383-42402 | Msa1339180:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | - | tig0003042:42384-42403 | Msa1339180:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | - | tig0003042:42465-42484 | Msa1339180:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | + | tig0003042:42500-42519 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | - | tig0003042:42499-42518 | Msa1339180:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | - | tig0003042:42574-42593 | Msa1339180:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | + | tig0003042:42581-42600 | None:intergenic | 35.0% |
| TTACGGTTGTGATTAGGATA+TGG | + | tig0003042:42894-42913 | None:intergenic | 35.0% | |
| GACATATTACGGTTGTGATT+AGG | + | tig0003042:42900-42919 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | - | tig0003042:43032-43051 | Msa1339180:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | - | tig0003042:43047-43066 | Msa1339180:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | + | tig0003042:43092-43111 | None:intergenic | 35.0% |
| ! | GTCTGAAATGTCAAGACTGT+GGG | - | tig0003042:42406-42425 | Msa1339180:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | + | tig0003042:42434-42453 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | - | tig0003042:42439-42458 | Msa1339180:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | + | tig0003042:42578-42597 | None:intergenic | 40.0% |
| TGTACTTATTATTGGCCGGA+GGG | + | tig0003042:42862-42881 | None:intergenic | 40.0% | |
| TTGTACTTATTATTGGCCGG+AGG | + | tig0003042:42863-42882 | None:intergenic | 40.0% | |
| TCCGGCCAATAATAAGTACA+AGG | - | tig0003042:42862-42881 | Msa1339180:intron | 40.0% | |
| CCCTTGTACTTATTATTGGC+CGG | + | tig0003042:42866-42885 | None:intergenic | 40.0% | |
| CCGGCCAATAATAAGTACAA+GGG | - | tig0003042:42863-42882 | Msa1339180:intron | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | - | tig0003042:43004-43023 | Msa1339180:intron | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | - | tig0003042:43152-43171 | Msa1339180:CDS | 40.0% | |
| ! | GTCTGAAATGTCAAGACTGT+GGG | - | tig0003042:42406-42425 | Msa1339180:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | + | tig0003042:42434-42453 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | - | tig0003042:42439-42458 | Msa1339180:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | + | tig0003042:42578-42597 | None:intergenic | 40.0% |
| TGTACTTATTATTGGCCGGA+GGG | + | tig0003042:42862-42881 | None:intergenic | 40.0% | |
| TTGTACTTATTATTGGCCGG+AGG | + | tig0003042:42863-42882 | None:intergenic | 40.0% | |
| TCCGGCCAATAATAAGTACA+AGG | - | tig0003042:42862-42881 | Msa1339180:intron | 40.0% | |
| CCCTTGTACTTATTATTGGC+CGG | + | tig0003042:42866-42885 | None:intergenic | 40.0% | |
| CCGGCCAATAATAAGTACAA+GGG | - | tig0003042:42863-42882 | Msa1339180:intron | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | - | tig0003042:43004-43023 | Msa1339180:intron | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | - | tig0003042:43152-43171 | Msa1339180:CDS | 40.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | - | tig0003042:42405-42424 | Msa1339180:CDS | 45.0% |
| TCTGTGACGCCTTCTTCTAT+CGG | + | tig0003042:42532-42551 | None:intergenic | 45.0% | |
| !! | TAGAAGAAGGCGTCACAGAA+TGG | - | tig0003042:42533-42552 | Msa1339180:CDS | 45.0% |
| AACACATGTCAATGTGGCCA+TGG | + | tig0003042:42970-42989 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | + | tig0003042:42976-42995 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | - | tig0003042:43185-43204 | Msa1339180:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | + | tig0003042:43248-43267 | None:intergenic | 45.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | - | tig0003042:42405-42424 | Msa1339180:CDS | 45.0% |
| TCTGTGACGCCTTCTTCTAT+CGG | + | tig0003042:42532-42551 | None:intergenic | 45.0% | |
| !! | TAGAAGAAGGCGTCACAGAA+TGG | - | tig0003042:42533-42552 | Msa1339180:CDS | 45.0% |
| AACACATGTCAATGTGGCCA+TGG | + | tig0003042:42970-42989 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | + | tig0003042:42976-42995 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | - | tig0003042:43185-43204 | Msa1339180:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | + | tig0003042:43248-43267 | None:intergenic | 45.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | - | tig0003042:42422-42441 | Msa1339180:CDS | 50.0% | |
| GGATTCCTGCCGATAGAAGA+AGG | - | tig0003042:42520-42539 | Msa1339180:CDS | 50.0% | |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | + | tig0003042:42564-42583 | None:intergenic | 50.0% |
| CTTATTATTGGCCGGAGGGA+GGG | + | tig0003042:42858-42877 | None:intergenic | 50.0% | |
| ACTTATTATTGGCCGGAGGG+AGG | + | tig0003042:42859-42878 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | - | tig0003042:42971-42990 | Msa1339180:intron | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | - | tig0003042:42983-43002 | Msa1339180:intron | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | - | tig0003042:43161-43180 | Msa1339180:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | + | tig0003042:43169-43188 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | + | tig0003042:43245-43264 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | - | tig0003042:43246-43265 | Msa1339180:CDS | 50.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | - | tig0003042:42422-42441 | Msa1339180:CDS | 50.0% | |
| GGATTCCTGCCGATAGAAGA+AGG | - | tig0003042:42520-42539 | Msa1339180:CDS | 50.0% | |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | + | tig0003042:42564-42583 | None:intergenic | 50.0% |
| CTTATTATTGGCCGGAGGGA+GGG | + | tig0003042:42858-42877 | None:intergenic | 50.0% | |
| ACTTATTATTGGCCGGAGGG+AGG | + | tig0003042:42859-42878 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | - | tig0003042:42971-42990 | Msa1339180:intron | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | - | tig0003042:42983-43002 | Msa1339180:intron | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | - | tig0003042:43161-43180 | Msa1339180:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | + | tig0003042:43169-43188 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | + | tig0003042:43245-43264 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | - | tig0003042:43246-43265 | Msa1339180:CDS | 50.0% | |
| TGACGCCTTCTTCTATCGGC+AGG | + | tig0003042:42528-42547 | None:intergenic | 55.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | + | tig0003042:42560-42579 | None:intergenic | 55.0% |
| TCTTCCTACTTCCCTCCCTC+CGG | - | tig0003042:42844-42863 | Msa1339180:intron | 55.0% | |
| TCCGGCTGTTACGAGTTCCA+TGG | - | tig0003042:42950-42969 | Msa1339180:intron | 55.0% | |
| GCCATGGAACTCGTAACAGC+CGG | + | tig0003042:42954-42973 | None:intergenic | 55.0% | |
| GGTGCGCTCTATGGACGAAA+CGG | - | tig0003042:42992-43011 | Msa1339180:intron | 55.0% | |
| TGACGCCTTCTTCTATCGGC+AGG | + | tig0003042:42528-42547 | None:intergenic | 55.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | + | tig0003042:42560-42579 | None:intergenic | 55.0% |
| TCTTCCTACTTCCCTCCCTC+CGG | - | tig0003042:42844-42863 | Msa1339180:intron | 55.0% | |
| TCCGGCTGTTACGAGTTCCA+TGG | - | tig0003042:42950-42969 | Msa1339180:intron | 55.0% | |
| GCCATGGAACTCGTAACAGC+CGG | + | tig0003042:42954-42973 | None:intergenic | 55.0% | |
| GGTGCGCTCTATGGACGAAA+CGG | - | tig0003042:42992-43011 | Msa1339180:intron | 55.0% | |
| GATGGCAATGGATGCGGTGG+AGG | + | tig0003042:43242-43261 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | + | tig0003042:43242-43261 | None:intergenic | 60.0% | |
| TTGGCCGGAGGGAGGGAAGT+AGG | + | tig0003042:42851-42870 | None:intergenic | 65.0% | |
| TTGGCCGGAGGGAGGGAAGT+AGG | + | tig0003042:42851-42870 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003042 | gene | 42366 | 43271 | 42366 | ID=Msa1339180;Name=Msa1339180 |
| tig0003042 | mRNA | 42366 | 43271 | 42366 | ID=Msa1339180-mRNA-1;Parent=Msa1339180;Name=Msa1339180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|0|2|0|199 |
| tig0003042 | exon | 43016 | 43271 | 43016 | ID=Msa1339180-mRNA-1:exon:1998;Parent=Msa1339180-mRNA-1 |
| tig0003042 | exon | 42366 | 42706 | 42366 | ID=Msa1339180-mRNA-1:exon:1997;Parent=Msa1339180-mRNA-1 |
| tig0003042 | CDS | 43016 | 43271 | 43016 | ID=Msa1339180-mRNA-1:cds;Parent=Msa1339180-mRNA-1 |
| tig0003042 | CDS | 42366 | 42706 | 42366 | ID=Msa1339180-mRNA-1:cds;Parent=Msa1339180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
