Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606700 | XP_024628284.1 | 62.264 | 106 | 31 | 1 | 140 | 236 | 50 | 155 | 2.64e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606700 | sp|Q9C5M0|DTC_ARATH | 40.341 | 176 | 76 | 5 | 73 | 236 | 114 | 272 | 7.25e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606700 | G7LIQ7 | 62.264 | 106 | 31 | 1 | 140 | 236 | 12 | 117 | 3.33e-37 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606700 | Msa0686890 | 0.907440 | 5.056574e-81 | -8.615850e-47 |
| Msa0606700 | Msa1123210 | 0.806476 | 8.076904e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606700 | MtrunA17_Chr8g0377811 | 53.435 | 131 | 45 | 4 | 1 | 115 | 1 | 131 | 7.25e-33 | 126 |
| Msa0606700 | MtrunA17_Chr8g0378951 | 56.481 | 108 | 34 | 2 | 142 | 236 | 168 | 275 | 2.57e-32 | 119 |
| Msa0606700 | MtrunA17_Chr8g0379131 | 65.625 | 64 | 22 | 0 | 173 | 236 | 28 | 91 | 1.72e-22 | 89.0 |
| Msa0606700 | MtrunA17_Chr8g0378971 | 81.818 | 44 | 8 | 0 | 193 | 236 | 1 | 44 | 9.56e-22 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606700 | AT5G19760.1 | 40.341 | 176 | 76 | 5 | 73 | 236 | 114 | 272 | 7.37e-28 | 108 |
Find 67 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCCTAACAATAAGATTTA+TGG | 0.182276 | 4_2:+53316957 | Msa0606700:CDS |
| TGTTTCTCCTTGTCCTTAAA+AGG | 0.207571 | 4_2:+53322291 | Msa0606700:three_prime_UTR |
| GTCGAACTGTTGATTTCTTC+AGG | 0.264711 | 4_2:+53320653 | Msa0606700:CDS |
| TGTATAGGTTTGCTTGGTTC+TGG | 0.297670 | 4_2:+53317191 | Msa0606700:intron |
| ATAACAAGGACCTGGAGTTT+TGG | 0.303588 | 4_2:-53317027 | None:intergenic |
| GTTCCATAAATCTTATTGTT+AGG | 0.303652 | 4_2:-53316960 | None:intergenic |
| ATGAGCATAGGCTGTTTGTT+TGG | 0.365000 | 4_2:+53322177 | Msa0606700:three_prime_UTR |
| CATCCCTTCAGACTGCTATA+TGG | 0.376859 | 4_2:-53321993 | None:intergenic |
| GGTATATTAGCTATGTTTCT+CGG | 0.386534 | 4_2:+53320233 | Msa0606700:CDS |
| TTCCTTATTGTAACCCTCAA+TGG | 0.392661 | 4_2:-53316982 | None:intergenic |
| CTGGAGTGTGAGTTTGATCT+TGG | 0.396345 | 4_2:-53316688 | None:intergenic |
| AACCATTGAGGGTTACAATA+AGG | 0.404903 | 4_2:+53316980 | Msa0606700:CDS |
| TTTACAATGTGATTAACATC+AGG | 0.409452 | 4_2:+53322314 | Msa0606700:three_prime_UTR |
| TATATTTGTATAGGTTTGCT+TGG | 0.410806 | 4_2:+53317185 | Msa0606700:intron |
| TGAGGAACGGAGAGAAAGAA+AGG | 0.430222 | 4_2:-53316647 | None:intergenic |
| GGATATTTCCCATCAGCATC+AGG | 0.442524 | 4_2:-53321655 | None:intergenic |
| CAGTCAAGAAAGCCGGTGTA+TGG | 0.443070 | 4_2:-53321676 | None:intergenic |
| AAGATTTATGGAACCATTGA+GGG | 0.445167 | 4_2:+53316969 | Msa0606700:CDS |
| GATTTCTTCAGGGACATTGT+TGG | 0.449828 | 4_2:+53320664 | Msa0606700:CDS |
| GTGACTTGTGAGAGTGGTTG+TGG | 0.449968 | 4_2:-53316568 | None:intergenic |
| TTTGGAATCATCATCTGAAT+GGG | 0.453126 | 4_2:-53317009 | None:intergenic |
| TAGGCTGTTTGTTTGGCACT+TGG | 0.459905 | 4_2:+53322184 | Msa0606700:three_prime_UTR |
| CACACATGGTATTTGACATA+AGG | 0.466035 | 4_2:-53322227 | None:intergenic |
| GAAATTAATTGCTGATTCTC+CGG | 0.469771 | 4_2:+53317253 | Msa0606700:CDS |
| TGAATCATCACATATTCAAA+TGG | 0.473762 | 4_2:-53321616 | None:intergenic |
| TCGAACTGTTGATTTCTTCA+GGG | 0.475220 | 4_2:+53320654 | Msa0606700:CDS |
| GGGCTGTATGCATCTGTCAC+TGG | 0.483360 | 4_2:+53320254 | Msa0606700:CDS |
| GGCACAATAGACAGGGAATC+CGG | 0.484320 | 4_2:-53321743 | None:intergenic |
| TAAGATTTATGGAACCATTG+AGG | 0.485445 | 4_2:+53316968 | Msa0606700:CDS |
| AGGCTGTTTGTTTGGCACTT+GGG | 0.486346 | 4_2:+53322185 | Msa0606700:three_prime_UTR |
| GTATATTAGCTATGTTTCTC+GGG | 0.498154 | 4_2:+53320234 | Msa0606700:CDS |
| GCATCTGTCACTGGTCGACT+TGG | 0.499136 | 4_2:+53320263 | Msa0606700:CDS |
| AATTCTGAGAAGTGTAATGC+TGG | 0.499615 | 4_2:+53317221 | Msa0606700:CDS |
| GCATCCTGTGTTGAAATAAG+TGG | 0.503203 | 4_2:-53318422 | None:intergenic |
| AAGTGTAATGCTGGAATTGA+AGG | 0.504018 | 4_2:+53317230 | Msa0606700:CDS |
| TTGTGTGTGACTTGTGAGAG+TGG | 0.506363 | 4_2:-53316574 | None:intergenic |
| GCTGCTCTTACTCTCGTAAG+AGG | 0.507408 | 4_2:+53320607 | Msa0606700:CDS |
| TTATGCATTTAGACGAAATG+AGG | 0.517532 | 4_2:-53316665 | None:intergenic |
| GTGGTTGTGGAGAGTGTGAG+TGG | 0.525907 | 4_2:-53316555 | None:intergenic |
| TTATTGTTAGGACTAGGATG+TGG | 0.538483 | 4_2:-53316948 | None:intergenic |
| ATTTAAAGTGAACACACTCA+TGG | 0.539663 | 4_2:-53322036 | None:intergenic |
| GACAGCACAGTCAAGAAAGC+CGG | 0.546333 | 4_2:-53321683 | None:intergenic |
| GAGGAACGGAGAGAAAGAAA+GGG | 0.547690 | 4_2:-53316646 | None:intergenic |
| GCCTCAACGAGCTTCGCAAA+CGG | 0.548237 | 4_2:+53321949 | Msa0606700:CDS |
| GATATTTGCTTTATGAGCAT+AGG | 0.557468 | 4_2:+53322165 | Msa0606700:three_prime_UTR |
| ATAGTTACATTGAACTCGCA+TGG | 0.570134 | 4_2:-53322142 | None:intergenic |
| CCTTGACTTAGTCCACTGTC+CGG | 0.573901 | 4_2:-53317272 | None:intergenic |
| ATAGGTTTGCTTGGTTCTGG+TGG | 0.574253 | 4_2:+53317194 | Msa0606700:intron |
| TAAATCTTATTGTTAGGACT+AGG | 0.575737 | 4_2:-53316954 | None:intergenic |
| GATGATGATTCCAAAACTCC+AGG | 0.579919 | 4_2:+53317017 | Msa0606700:CDS |
| CAAGATCAAACTCACACTCC+AGG | 0.582539 | 4_2:+53316689 | Msa0606700:CDS |
| CAAGAACATAATTTGAACTC+AGG | 0.586642 | 4_2:+53317314 | Msa0606700:CDS |
| TTACAATGTGATTAACATCA+GGG | 0.593201 | 4_2:+53322315 | Msa0606700:three_prime_UTR |
| CATATAGCAGTCTGAAGGGA+TGG | 0.593862 | 4_2:+53321994 | Msa0606700:three_prime_UTR |
| AACGGTAGAGTAGTTAGAGA+TGG | 0.609130 | 4_2:+53321967 | Msa0606700:exon |
| GAGTCCACTTATTTCAACAC+AGG | 0.610981 | 4_2:+53318418 | Msa0606700:CDS |
| ATTGCTGATTCTCCGGACAG+TGG | 0.612845 | 4_2:+53317260 | Msa0606700:CDS |
| AGTGTAATGCTGGAATTGAA+GGG | 0.618170 | 4_2:+53317231 | Msa0606700:CDS |
| CCGGACAGTGGACTAAGTCA+AGG | 0.621855 | 4_2:+53317272 | Msa0606700:CDS |
| ATATGCAACCTGATGCTGAT+GGG | 0.629454 | 4_2:+53321647 | Msa0606700:CDS |
| TTGCCATATAGCAGTCTGAA+GGG | 0.637844 | 4_2:+53321990 | Msa0606700:three_prime_UTR |
| CATTTAGACGAAATGAGGAA+CGG | 0.648468 | 4_2:-53316660 | None:intergenic |
| AATATGCAACCTGATGCTGA+TGG | 0.649283 | 4_2:+53321646 | Msa0606700:CDS |
| ACCGTTTGCGAAGCTCGTTG+AGG | 0.661509 | 4_2:-53321950 | None:intergenic |
| GATGGGAAATATCCATACAC+CGG | 0.663159 | 4_2:+53321664 | Msa0606700:CDS |
| ACTCACGTGTGCGACAAATG+TGG | 0.663409 | 4_2:+53316909 | Msa0606700:CDS |
| GTTGCCATATAGCAGTCTGA+AGG | 0.663922 | 4_2:+53321989 | Msa0606700:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTATGTTATTCTTA+CGG | + | chr4_2:53316780-53316799 | Msa0606700:intron | 10.0% |
| !!! | AATCATTTTTCATTAAAAAT+GGG | - | chr4_2:53317751-53317770 | None:intergenic | 10.0% |
| !!! | AAATCATTTTTCATTAAAAA+TGG | - | chr4_2:53317752-53317771 | None:intergenic | 10.0% |
| !! | TTTCATTGTATATTAATAAA+AGG | + | chr4_2:53318547-53318566 | Msa0606700:intron | 10.0% |
| !! | ATTGACTATTAAAAATTATT+GGG | + | chr4_2:53319912-53319931 | Msa0606700:intron | 10.0% |
| !! | TTCAAAATTTATTTATTGTT+AGG | + | chr4_2:53320731-53320750 | Msa0606700:intron | 10.0% |
| !! | TTATATTTATATATTGTTCA+TGG | + | chr4_2:53321910-53321929 | Msa0606700:intron | 10.0% |
| !! | AATAATAGGAAATGAAATTA+TGG | + | chr4_2:53317096-53317115 | Msa0606700:intron | 15.0% |
| !! | TTAATGTGTTATATTTGTAT+AGG | + | chr4_2:53317176-53317195 | Msa0606700:intron | 15.0% |
| !!! | ACTATTTATTTGAAATTCAA+CGG | + | chr4_2:53317909-53317928 | Msa0606700:intron | 15.0% |
| !! | CAATGAAAAATAATATTTGT+TGG | - | chr4_2:53318535-53318554 | None:intergenic | 15.0% |
| !! | TGTTGTTGTATATTAATAAA+AGG | + | chr4_2:53319837-53319856 | Msa0606700:intron | 15.0% |
| !!! | TAAAGAGAATTTTAGTATAA+GGG | - | chr4_2:53319886-53319905 | None:intergenic | 15.0% |
| !!! | ATAATTTTTAATAGTCAATG+AGG | - | chr4_2:53319911-53319930 | None:intergenic | 15.0% |
| !!! | CATTGACTATTAAAAATTAT+TGG | + | chr4_2:53319911-53319930 | Msa0606700:intron | 15.0% |
| !!! | TTTTAACTCTTTTTTTATGT+TGG | + | chr4_2:53320559-53320578 | Msa0606700:intron | 15.0% |
| !! | AAAAATAAATCTCAACTTTA+TGG | + | chr4_2:53321331-53321350 | Msa0606700:intron | 15.0% |
| !! | TTAACATTCCAATATATTGA+AGG | + | chr4_2:53317149-53317168 | Msa0606700:intron | 20.0% |
| !! | TTAACAAACCTTCAATATAT+TGG | - | chr4_2:53317160-53317179 | None:intergenic | 20.0% |
| !! | ATTTAATGACTTTATGCTTA+AGG | + | chr4_2:53317630-53317649 | Msa0606700:intron | 20.0% |
| !! | ATAAAATGCATATTCAATGT+TGG | - | chr4_2:53318314-53318333 | None:intergenic | 20.0% |
| !!! | GAAAAATAATATTTGTTGGT+AGG | - | chr4_2:53318531-53318550 | None:intergenic | 20.0% |
| !! | AAAACTAAAGTGAAAAGATA+AGG | - | chr4_2:53318978-53318997 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCACTTTAGTTT+TGG | + | chr4_2:53318977-53318996 | Msa0606700:intron | 20.0% |
| !!! | CTAAAGAGAATTTTAGTATA+AGG | - | chr4_2:53319887-53319906 | None:intergenic | 20.0% |
| !! | CTTATACTAAAATTCTCTTT+AGG | + | chr4_2:53319885-53319904 | Msa0606700:intron | 20.0% |
| !!! | CAAGTTTATTTTGACATTTT+AGG | + | chr4_2:53320037-53320056 | Msa0606700:intron | 20.0% |
| !!! | CTTGTTTATTTTGACATTTT+AGG | + | chr4_2:53320122-53320141 | Msa0606700:intron | 20.0% |
| !!! | TATTTTGACATTTTAGGATT+TGG | + | chr4_2:53320128-53320147 | Msa0606700:intron | 20.0% |
| !! | TAAATTCATACCTAAACAAA+GGG | - | chr4_2:53320183-53320202 | None:intergenic | 20.0% |
| !!! | TATCGTTTTAACTTACTTTA+AGG | + | chr4_2:53320528-53320547 | Msa0606700:intron | 20.0% |
| !!! | ATCGTTTTAACTTACTTTAA+GGG | + | chr4_2:53320529-53320548 | Msa0606700:intron | 20.0% |
| !! | TATTCTATTTACTAGCTAAT+TGG | + | chr4_2:53320959-53320978 | Msa0606700:intron | 20.0% |
| !! | GACTCAATTAATAAAAGATT+GGG | - | chr4_2:53321403-53321422 | None:intergenic | 20.0% |
| !! | AGACTCAATTAATAAAAGAT+TGG | - | chr4_2:53321404-53321423 | None:intergenic | 20.0% |
| ! | AAAAAACGCTTAGAGAAAAA+AGG | - | chr4_2:53316613-53316632 | None:intergenic | 25.0% |
| ! | AAGAGACATTAAAGAGAAAA+AGG | - | chr4_2:53316720-53316739 | None:intergenic | 25.0% |
| ! | AATATCATCTTTGTGTCAAA+AGG | + | chr4_2:53316846-53316865 | Msa0606700:intron | 25.0% |
| ! | ATATCATCTTTGTGTCAAAA+GGG | + | chr4_2:53316847-53316866 | Msa0606700:intron | 25.0% |
| ! | TAAATCTTATTGTTAGGACT+AGG | - | chr4_2:53316957-53316976 | None:intergenic | 25.0% |
| ! | AGTCCTAACAATAAGATTTA+TGG | + | chr4_2:53316957-53316976 | Msa0606700:CDS | 25.0% |
| ! | GTTCCATAAATCTTATTGTT+AGG | - | chr4_2:53316963-53316982 | None:intergenic | 25.0% |
| ! | ATTGCAAAGTTTCTATAACA+AGG | - | chr4_2:53317044-53317063 | None:intergenic | 25.0% |
| !! | TATATTTGTATAGGTTTGCT+TGG | + | chr4_2:53317185-53317204 | Msa0606700:intron | 25.0% |
| ! | TGCTGGCATAATTAAAAATT+TGG | + | chr4_2:53317532-53317551 | Msa0606700:intron | 25.0% |
| ! | GCTGGCATAATTAAAAATTT+GGG | + | chr4_2:53317533-53317552 | Msa0606700:intron | 25.0% |
| ! | TTATGCTTAAGGTAAAAGTT+TGG | + | chr4_2:53317641-53317660 | Msa0606700:intron | 25.0% |
| !! | CATTTTTCATTAAAAATGGG+AGG | - | chr4_2:53317748-53317767 | None:intergenic | 25.0% |
| !!! | TCAAATAAATAGTTCTAGCT+TGG | - | chr4_2:53317902-53317921 | None:intergenic | 25.0% |
| !! | AATCCAGTTTATGTGTATTT+TGG | + | chr4_2:53318241-53318260 | Msa0606700:intron | 25.0% |
| ! | ATTCCAAAATACACATAAAC+TGG | - | chr4_2:53318247-53318266 | None:intergenic | 25.0% |
| ! | TTGTATATTAATAAAAGGCC+TGG | + | chr4_2:53318552-53318571 | Msa0606700:intron | 25.0% |
| ! | TGTATATTAATAAAAGGCCT+GGG | + | chr4_2:53318553-53318572 | Msa0606700:intron | 25.0% |
| !!! | ACACTTAGTTTTCATTGATT+TGG | + | chr4_2:53318764-53318783 | Msa0606700:intron | 25.0% |
| ! | TATTGTTATGGGAAAATCTA+CGG | - | chr4_2:53318928-53318947 | None:intergenic | 25.0% |
| ! | ATATTTAAACCGTGTAACTT+GGG | - | chr4_2:53319240-53319259 | None:intergenic | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | + | chr4_2:53319243-53319262 | Msa0606700:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr4_2:53319579-53319598 | Msa0606700:intron | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr4_2:53319721-53319740 | Msa0606700:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr4_2:53319761-53319780 | None:intergenic | 25.0% |
| ! | ATTATCAACGCAATACTTAT+CGG | - | chr4_2:53320068-53320087 | None:intergenic | 25.0% |
| !! | TTTCATTTATCCCTTTGTTT+AGG | + | chr4_2:53320170-53320189 | Msa0606700:intron | 25.0% |
| ! | GTAAATTCATACCTAAACAA+AGG | - | chr4_2:53320184-53320203 | None:intergenic | 25.0% |
| ! | ATTCGGAGAAGAAAAAAAAA+AGG | - | chr4_2:53320442-53320461 | None:intergenic | 25.0% |
| !!! | AACTCTTTTTTTATGTTGGA+AGG | + | chr4_2:53320563-53320582 | Msa0606700:intron | 25.0% |
| !!! | ACTCTTTTTTTATGTTGGAA+GGG | + | chr4_2:53320564-53320583 | Msa0606700:intron | 25.0% |
| ! | ATGAAATAGACAAAACCAAA+GGG | - | chr4_2:53320770-53320789 | None:intergenic | 25.0% |
| ! | AATGAAATAGACAAAACCAA+AGG | - | chr4_2:53320771-53320790 | None:intergenic | 25.0% |
| !! | TTTTAGTATGTCTATGTTGT+TGG | + | chr4_2:53320794-53320813 | Msa0606700:intron | 25.0% |
| ! | ATTAACAACATAGTATCTCA+TGG | + | chr4_2:53320905-53320924 | Msa0606700:intron | 25.0% |
| ! | TAGCTAGTAAATAGAATAGT+TGG | - | chr4_2:53320957-53320976 | None:intergenic | 25.0% |
| !! | ATAAATACCATTTTGTGTAG+AGG | + | chr4_2:53321248-53321267 | Msa0606700:intron | 25.0% |
| !! | TAAATACCATTTTGTGTAGA+GGG | + | chr4_2:53321249-53321268 | Msa0606700:intron | 25.0% |
| !! | TTTTATGAAGTTGAACACTT+CGG | - | chr4_2:53321314-53321333 | None:intergenic | 25.0% |
| ! | TGAATCATCACATATTCAAA+TGG | - | chr4_2:53321619-53321638 | None:intergenic | 25.0% |
| ! | ATTTATATATTGTTCATGGC+AGG | + | chr4_2:53321914-53321933 | Msa0606700:intron | 25.0% |
| !! | ATCACATTGTAAACCTTTTA+AGG | - | chr4_2:53322307-53322326 | None:intergenic | 25.0% |
| ! | TTTACAATGTGATTAACATC+AGG | + | chr4_2:53322314-53322333 | Msa0606700:three_prime_UTR | 25.0% |
| ! | TTACAATGTGATTAACATCA+GGG | + | chr4_2:53322315-53322334 | Msa0606700:three_prime_UTR | 25.0% |
| TTATGCATTTAGACGAAATG+AGG | - | chr4_2:53316668-53316687 | None:intergenic | 30.0% | |
| TAAGATTTATGGAACCATTG+AGG | + | chr4_2:53316968-53316987 | Msa0606700:CDS | 30.0% | |
| AAGATTTATGGAACCATTGA+GGG | + | chr4_2:53316969-53316988 | Msa0606700:CDS | 30.0% | |
| ! | TTTGGAATCATCATCTGAAT+GGG | - | chr4_2:53317012-53317031 | None:intergenic | 30.0% |
| !!! | TTTTGGAATCATCATCTGAA+TGG | - | chr4_2:53317013-53317032 | None:intergenic | 30.0% |
| ! | CATTGCTGTTGAGAAATAAT+AGG | + | chr4_2:53317082-53317101 | Msa0606700:intron | 30.0% |
| !! | GAAATTAATTGCTGATTCTC+CGG | + | chr4_2:53317253-53317272 | Msa0606700:CDS | 30.0% |
| CAAGAACATAATTTGAACTC+AGG | + | chr4_2:53317314-53317333 | Msa0606700:CDS | 30.0% | |
| TAGCTTCTTCATGAAAATCA+CGG | + | chr4_2:53317401-53317420 | Msa0606700:intron | 30.0% | |
| TATGCTCATGACTAAGTAAA+CGG | - | chr4_2:53317486-53317505 | None:intergenic | 30.0% | |
| AAGTCATTAAATTCTCGACA+AGG | - | chr4_2:53317622-53317641 | None:intergenic | 30.0% | |
| TTTCATTGTCTGTTGAAATG+TGG | + | chr4_2:53317693-53317712 | Msa0606700:intron | 30.0% | |
| ! | TTTTCATTAAAAATGGGAGG+CGG | - | chr4_2:53317745-53317764 | None:intergenic | 30.0% |
| ! | TTGACTTTTCTCAACATGTT+AGG | + | chr4_2:53317866-53317885 | Msa0606700:intron | 30.0% |
| ! | TGACTTTTCTCAACATGTTA+GGG | + | chr4_2:53317867-53317886 | Msa0606700:intron | 30.0% |
| TTATAGAATTGCGGTTAAAG+CGG | - | chr4_2:53318153-53318172 | None:intergenic | 30.0% | |
| AAACCAGTGTTATAGAATTG+CGG | - | chr4_2:53318162-53318181 | None:intergenic | 30.0% | |
| ATTATATCTCTCTCATTCCA+AGG | + | chr4_2:53318337-53318356 | Msa0606700:intron | 30.0% | |
| TACAGATAAGAAACAAACCT+TGG | - | chr4_2:53318357-53318376 | None:intergenic | 30.0% | |
| GCAGCTGTGAAAAAAATTAT+CGG | - | chr4_2:53318392-53318411 | None:intergenic | 30.0% | |
| !!! | AGTTTTCATTGATTTGGAGA+AGG | + | chr4_2:53318770-53318789 | Msa0606700:intron | 30.0% |
| ! | GTAGATTTTCCCATAACAAT+AGG | + | chr4_2:53318927-53318946 | Msa0606700:intron | 30.0% |
| AGTGAAAAGATAAGGACTTA+AGG | - | chr4_2:53318970-53318989 | None:intergenic | 30.0% | |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | + | chr4_2:53318989-53319008 | Msa0606700:intron | 30.0% |
| TATTTAAACCGTGTAACTTG+GGG | - | chr4_2:53319239-53319258 | None:intergenic | 30.0% | |
| GATATTTAAACCGTGTAACT+TGG | - | chr4_2:53319241-53319260 | None:intergenic | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | + | chr4_2:53319242-53319261 | Msa0606700:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr4_2:53319575-53319594 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr4_2:53319645-53319664 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr4_2:53319646-53319665 | Msa0606700:intron | 30.0% | |
| ! | TTTTCTAATGGTTTCTCGAA+TGG | - | chr4_2:53319714-53319733 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr4_2:53319726-53319745 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr4_2:53319765-53319784 | Msa0606700:intron | 30.0% |
| GGTATATTAGCTATGTTTCT+CGG | + | chr4_2:53320233-53320252 | Msa0606700:CDS | 30.0% | |
| GTATATTAGCTATGTTTCTC+GGG | + | chr4_2:53320234-53320253 | Msa0606700:CDS | 30.0% | |
| !! | CTGTTTTGTCTTTTTGACTA+GGG | + | chr4_2:53320404-53320423 | Msa0606700:intron | 30.0% |
| !! | TGTTTTGTCTTTTTGACTAG+GGG | + | chr4_2:53320405-53320424 | Msa0606700:intron | 30.0% |
| TCCGAATAAACACACATAAA+TGG | + | chr4_2:53320455-53320474 | Msa0606700:intron | 30.0% | |
| CCCATTTATGTGTGTTTATT+CGG | - | chr4_2:53320459-53320478 | None:intergenic | 30.0% | |
| CCGAATAAACACACATAAAT+GGG | + | chr4_2:53320456-53320475 | Msa0606700:intron | 30.0% | |
| !!! | CTCTTTTTTTATGTTGGAAG+GGG | + | chr4_2:53320565-53320584 | Msa0606700:intron | 30.0% |
| TATCTGCTATCATGCTATAA+CGG | + | chr4_2:53320860-53320879 | Msa0606700:intron | 30.0% | |
| ! | TATCATGCTATAACGGTTTT+TGG | + | chr4_2:53320867-53320886 | Msa0606700:intron | 30.0% |
| AATTGGTGTGATTACCTAAT+AGG | + | chr4_2:53320976-53320995 | Msa0606700:intron | 30.0% | |
| ACATCTACAAGTACATTAAG+CGG | - | chr4_2:53321006-53321025 | None:intergenic | 30.0% | |
| AGTTTCTGATTGTTTGCAAT+AGG | + | chr4_2:53321050-53321069 | Msa0606700:intron | 30.0% | |
| !!! | TTGTATTTTGCTTTTTCCGT+TGG | + | chr4_2:53321106-53321125 | Msa0606700:intron | 30.0% |
| !!! | TGTATTTTGCTTTTTCCGTT+GGG | + | chr4_2:53321107-53321126 | Msa0606700:intron | 30.0% |
| ! | GTCAAAATTTTGAATGCTGA+AGG | + | chr4_2:53321703-53321722 | Msa0606700:CDS | 30.0% |
| ! | ATTTAAAGTGAACACACTCA+TGG | - | chr4_2:53322039-53322058 | None:intergenic | 30.0% |
| GATATTTGCTTTATGAGCAT+AGG | + | chr4_2:53322165-53322184 | Msa0606700:three_prime_UTR | 30.0% | |
| !! | TTGTAAACCTTTTAAGGACA+AGG | - | chr4_2:53322301-53322320 | None:intergenic | 30.0% |
| !! | ATTAACATCAGGGTATTTTG+TGG | + | chr4_2:53322325-53322344 | Msa0606700:three_prime_UTR | 30.0% |
| GCTTAGAGAAAAAAGGAAGA+AGG | - | chr4_2:53316606-53316625 | None:intergenic | 35.0% | |
| CATTTAGACGAAATGAGGAA+CGG | - | chr4_2:53316663-53316682 | None:intergenic | 35.0% | |
| !! | AAAGAGAAAAAGGAAGTACC+TGG | - | chr4_2:53316710-53316729 | None:intergenic | 35.0% |
| TTATTGTTAGGACTAGGATG+TGG | - | chr4_2:53316951-53316970 | None:intergenic | 35.0% | |
| AACCATTGAGGGTTACAATA+AGG | + | chr4_2:53316980-53316999 | Msa0606700:CDS | 35.0% | |
| TTCCTTATTGTAACCCTCAA+TGG | - | chr4_2:53316985-53317004 | None:intergenic | 35.0% | |
| AAGTTTCTATAACAAGGACC+TGG | - | chr4_2:53317038-53317057 | None:intergenic | 35.0% | |
| ! | AATTCTGAGAAGTGTAATGC+TGG | + | chr4_2:53317221-53317240 | Msa0606700:CDS | 35.0% |
| AAGTGTAATGCTGGAATTGA+AGG | + | chr4_2:53317230-53317249 | Msa0606700:CDS | 35.0% | |
| AGTGTAATGCTGGAATTGAA+GGG | + | chr4_2:53317231-53317250 | Msa0606700:CDS | 35.0% | |
| ! | TGAACTCAGGTACTCTTTTA+AGG | + | chr4_2:53317327-53317346 | Msa0606700:intron | 35.0% |
| AAATCACGGTCAACTTACAT+TGG | + | chr4_2:53317415-53317434 | Msa0606700:intron | 35.0% | |
| ATTGTCTGTTGAAATGTGGT+TGG | + | chr4_2:53317697-53317716 | Msa0606700:intron | 35.0% | |
| TTTCATTAAAAATGGGAGGC+GGG | - | chr4_2:53317744-53317763 | None:intergenic | 35.0% | |
| ! | ACAAAAGTACATCCACTTTC+AGG | - | chr4_2:53317964-53317983 | None:intergenic | 35.0% |
| ! | ACTTTTGTCCTTGTCTTCTA+TGG | + | chr4_2:53317976-53317995 | Msa0606700:intron | 35.0% |
| TAACCGCAATTCTATAACAC+TGG | + | chr4_2:53318156-53318175 | Msa0606700:intron | 35.0% | |
| AATGCATATTCAATGTTGGC+AGG | - | chr4_2:53318310-53318329 | None:intergenic | 35.0% | |
| ATGAGTCATACCATGAAGTA+AGG | + | chr4_2:53318604-53318623 | Msa0606700:intron | 35.0% | |
| TGAGTCATACCATGAAGTAA+GGG | + | chr4_2:53318605-53318624 | Msa0606700:intron | 35.0% | |
| AAGAAAAGAGACTCACGTTA+CGG | + | chr4_2:53318644-53318663 | Msa0606700:intron | 35.0% | |
| !!! | AACCAATTTGGTTTTATGCC+TGG | + | chr4_2:53318669-53318688 | Msa0606700:intron | 35.0% |
| !!! | ACCAATTTGGTTTTATGCCT+GGG | + | chr4_2:53318670-53318689 | Msa0606700:intron | 35.0% |
| TGCATATATTAGAGCTATCC+AGG | + | chr4_2:53318854-53318873 | Msa0606700:intron | 35.0% | |
| ! | TCTGCAAAAAGCATACATCT+CGG | - | chr4_2:53319035-53319054 | None:intergenic | 35.0% |
| ATATCATACCCCAAGTTACA+CGG | + | chr4_2:53319228-53319247 | Msa0606700:intron | 35.0% | |
| TACATCATCGTATTCAAGCT+GGG | + | chr4_2:53319303-53319322 | Msa0606700:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr4_2:53319368-53319387 | Msa0606700:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr4_2:53319377-53319396 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | + | chr4_2:53319381-53319400 | Msa0606700:intron | 35.0% | |
| ACCAACAATGTTGTATGGTA+CGG | + | chr4_2:53319415-53319434 | Msa0606700:intron | 35.0% | |
| TGAGAGTAAAGTAAGTGTAG+CGG | + | chr4_2:53319463-53319482 | Msa0606700:intron | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr4_2:53319516-53319535 | Msa0606700:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr4_2:53319568-53319587 | Msa0606700:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr4_2:53319588-53319607 | Msa0606700:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr4_2:53319593-53319612 | Msa0606700:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr4_2:53319649-53319668 | Msa0606700:intron | 35.0% | |
| ! | GTTTCTCGAATGGTTTTCTT+AGG | - | chr4_2:53319704-53319723 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr4_2:53319733-53319752 | Msa0606700:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr4_2:53319745-53319764 | Msa0606700:intron | 35.0% |
| !!! | ACCTTTTTTGTCTGCATATG+AGG | - | chr4_2:53319863-53319882 | None:intergenic | 35.0% |
| ! | ATGATGATGAAAGCAAAGCA+AGG | - | chr4_2:53319942-53319961 | None:intergenic | 35.0% |
| TAAACTGAATCACTTCATGC+AGG | + | chr4_2:53320211-53320230 | Msa0606700:intron | 35.0% | |
| AAACTGAATCACTTCATGCA+GGG | + | chr4_2:53320212-53320231 | Msa0606700:intron | 35.0% | |
| TGTTCAGTGTTCAGTACAAT+TGG | + | chr4_2:53320315-53320334 | Msa0606700:intron | 35.0% | |
| !! | GCTGTTTTGTCTTTTTGACT+AGG | + | chr4_2:53320403-53320422 | Msa0606700:intron | 35.0% |
| !! | TCGAACTGTTGATTTCTTCA+GGG | + | chr4_2:53320654-53320673 | Msa0606700:CDS | 35.0% |
| !!! | GCTATAACGGTTTTTGGTTT+TGG | + | chr4_2:53320873-53320892 | Msa0606700:intron | 35.0% |
| CTACTCTCTAAATAACTTCC+TGG | + | chr4_2:53320931-53320950 | Msa0606700:intron | 35.0% | |
| AGTAAATAGAATAGTTGGCC+AGG | - | chr4_2:53320952-53320971 | None:intergenic | 35.0% | |
| GCTATCAAGATTATACCCAA+CGG | - | chr4_2:53321125-53321144 | None:intergenic | 35.0% | |
| ATTCAACCCTCTACACAAAA+TGG | - | chr4_2:53321258-53321277 | None:intergenic | 35.0% | |
| CTCAACTTTATGGCTCAATT+TGG | + | chr4_2:53321341-53321360 | Msa0606700:intron | 35.0% | |
| !!! | GGAGCTTTGAAATTTTACAC+CGG | + | chr4_2:53321724-53321743 | Msa0606700:CDS | 35.0% |
| AAATTCTGGCACAATAGACA+GGG | - | chr4_2:53321753-53321772 | None:intergenic | 35.0% | |
| ATAGTTACATTGAACTCGCA+TGG | - | chr4_2:53322145-53322164 | None:intergenic | 35.0% | |
| CACACATGGTATTTGACATA+AGG | - | chr4_2:53322230-53322249 | None:intergenic | 35.0% | |
| TGTTTCTCCTTGTCCTTAAA+AGG | + | chr4_2:53322291-53322310 | Msa0606700:three_prime_UTR | 35.0% | |
| ! | ACGGAAAGTCCTTTTCTTTC+TGG | + | chr4_2:53316799-53316818 | Msa0606700:intron | 40.0% |
| ! | CGGAAAGTCCTTTTCTTTCT+GGG | + | chr4_2:53316800-53316819 | Msa0606700:intron | 40.0% |
| ! | CCTTTTCTTTCTGGGTTTCT+CGG | + | chr4_2:53316808-53316827 | Msa0606700:intron | 40.0% |
| !! | TTTTAAGGGCACGAGAATCA+TGG | + | chr4_2:53316885-53316904 | Msa0606700:intron | 40.0% |
| GATGATGATTCCAAAACTCC+AGG | + | chr4_2:53317017-53317036 | Msa0606700:CDS | 40.0% | |
| ! | ATAACAAGGACCTGGAGTTT+TGG | - | chr4_2:53317030-53317049 | None:intergenic | 40.0% |
| ! | TGTATAGGTTTGCTTGGTTC+TGG | + | chr4_2:53317191-53317210 | Msa0606700:intron | 40.0% |
| TGGATACGTGTTTGCTTAGT+AGG | - | chr4_2:53317456-53317475 | None:intergenic | 40.0% | |
| ACTAAGTAAACGGCTATGCT+TGG | - | chr4_2:53317476-53317495 | None:intergenic | 40.0% | |
| CAGCAACAAGTATTCTACTG+TGG | - | chr4_2:53317517-53317536 | None:intergenic | 40.0% | |
| ! | CACAGTAGAATACTTGTTGC+TGG | + | chr4_2:53317515-53317534 | Msa0606700:intron | 40.0% |
| ! | ATGAGAACTGATGACTGGTT+GGG | + | chr4_2:53317796-53317815 | Msa0606700:intron | 40.0% |
| TTTGTCCTTGTCTTCTATGG+CGG | + | chr4_2:53317979-53317998 | Msa0606700:intron | 40.0% | |
| !!! | GGACGGAGTTTTGGAATTTT+CGG | - | chr4_2:53318025-53318044 | None:intergenic | 40.0% |
| GGATTTCGAGGTTTCCAATA+TGG | - | chr4_2:53318108-53318127 | None:intergenic | 40.0% | |
| ! | CCTATTGGTATTGGATTTCG+AGG | - | chr4_2:53318120-53318139 | None:intergenic | 40.0% |
| CCTCGAAATCCAATACCAAT+AGG | + | chr4_2:53318117-53318136 | Msa0606700:intron | 40.0% | |
| TCCAATACCAATAGGTGTCA+TGG | + | chr4_2:53318125-53318144 | Msa0606700:intron | 40.0% | |
| ! | TGAAGTGCATCTCTCACTTT+TGG | + | chr4_2:53318211-53318230 | Msa0606700:intron | 40.0% |
| GAGTCCACTTATTTCAACAC+AGG | + | chr4_2:53318418-53318437 | Msa0606700:CDS | 40.0% | |
| GCATCCTGTGTTGAAATAAG+TGG | - | chr4_2:53318425-53318444 | None:intergenic | 40.0% | |
| GATGCTAAAGCCCTCAATTT+AGG | + | chr4_2:53318505-53318524 | Msa0606700:intron | 40.0% | |
| ! | TGTTGGTAGGCCTAAATTGA+GGG | - | chr4_2:53318518-53318537 | None:intergenic | 40.0% |
| ! | TTGTTGGTAGGCCTAAATTG+AGG | - | chr4_2:53318519-53318538 | None:intergenic | 40.0% |
| ATTAATAAAAGGCCTGGGAG+AGG | + | chr4_2:53318558-53318577 | Msa0606700:intron | 40.0% | |
| TTAATAAAAGGCCTGGGAGA+GGG | + | chr4_2:53318559-53318578 | Msa0606700:intron | 40.0% | |
| GCTCAATTACCCTTACTTCA+TGG | - | chr4_2:53318617-53318636 | None:intergenic | 40.0% | |
| CACGTTACGGATAACCAATT+TGG | + | chr4_2:53318657-53318676 | Msa0606700:intron | 40.0% | |
| TCCCAGGCATAAAACCAAAT+TGG | - | chr4_2:53318674-53318693 | None:intergenic | 40.0% | |
| !!! | AATTTGGTTTTATGCCTGGG+AGG | + | chr4_2:53318673-53318692 | Msa0606700:intron | 40.0% |
| ! | GAGTACCTAGAGAGATTTTG+TGG | + | chr4_2:53318802-53318821 | Msa0606700:intron | 40.0% |
| GCTTTCCACAAAATCTCTCT+AGG | - | chr4_2:53318810-53318829 | None:intergenic | 40.0% | |
| AGCTATCCAGGATATGTATG+AGG | + | chr4_2:53318866-53318885 | Msa0606700:intron | 40.0% | |
| GCTATCCAGGATATGTATGA+GGG | + | chr4_2:53318867-53318886 | Msa0606700:intron | 40.0% | |
| TGGTGCAGTCCTATTGTTAT+GGG | - | chr4_2:53318939-53318958 | None:intergenic | 40.0% | |
| TTGGTGCAGTCCTATTGTTA+TGG | - | chr4_2:53318940-53318959 | None:intergenic | 40.0% | |
| ATAACAATAGGACTGCACCA+AGG | + | chr4_2:53318939-53318958 | Msa0606700:intron | 40.0% | |
| TAACAATAGGACTGCACCAA+GGG | + | chr4_2:53318940-53318959 | Msa0606700:intron | 40.0% | |
| TGGAATGTAACCTCAGCAAA+AGG | + | chr4_2:53319168-53319187 | Msa0606700:intron | 40.0% | |
| ! | TCTACTTTGGAGGTGAAAGT+TGG | + | chr4_2:53319200-53319219 | Msa0606700:intron | 40.0% |
| GGGTGCATAGTACAAAATGA+CGG | + | chr4_2:53319263-53319282 | Msa0606700:intron | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | + | chr4_2:53319302-53319321 | Msa0606700:intron | 40.0% | |
| GTCAGACCAACAATGTTGTA+TGG | + | chr4_2:53319410-53319429 | Msa0606700:intron | 40.0% | |
| TCCGTACCATACAACATTGT+TGG | - | chr4_2:53319419-53319438 | None:intergenic | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr4_2:53319510-53319529 | Msa0606700:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr4_2:53319636-53319655 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr4_2:53319674-53319693 | Msa0606700:intron | 40.0% | |
| GCCTCATATGCAGACAAAAA+AGG | + | chr4_2:53319859-53319878 | Msa0606700:intron | 40.0% | |
| CTTATCGACAAAGCAATTCG+AGG | - | chr4_2:53319965-53319984 | None:intergenic | 40.0% | |
| !! | GTCGAACTGTTGATTTCTTC+AGG | + | chr4_2:53320653-53320672 | Msa0606700:CDS | 40.0% |
| GATTTCTTCAGGGACATTGT+TGG | + | chr4_2:53320664-53320683 | Msa0606700:CDS | 40.0% | |
| TTGGCTTAGTTTATCTTCCC+TGG | + | chr4_2:53321360-53321379 | Msa0606700:intron | 40.0% | |
| AATATGCAACCTGATGCTGA+TGG | + | chr4_2:53321646-53321665 | Msa0606700:CDS | 40.0% | |
| ATATGCAACCTGATGCTGAT+GGG | + | chr4_2:53321647-53321666 | Msa0606700:CDS | 40.0% | |
| GATGGGAAATATCCATACAC+CGG | + | chr4_2:53321664-53321683 | Msa0606700:CDS | 40.0% | |
| GAAATTCTGGCACAATAGAC+AGG | - | chr4_2:53321754-53321773 | None:intergenic | 40.0% | |
| AGGAGCAGCAGTATTAATAG+TGG | - | chr4_2:53321842-53321861 | None:intergenic | 40.0% | |
| AACGGTAGAGTAGTTAGAGA+TGG | + | chr4_2:53321967-53321986 | Msa0606700:exon | 40.0% | |
| TTGCCATATAGCAGTCTGAA+GGG | + | chr4_2:53321990-53322009 | Msa0606700:three_prime_UTR | 40.0% | |
| ATGAGCATAGGCTGTTTGTT+TGG | + | chr4_2:53322177-53322196 | Msa0606700:three_prime_UTR | 40.0% | |
| ACCATGTGTGTGTGTGTATA+TGG | + | chr4_2:53322240-53322259 | Msa0606700:three_prime_UTR | 40.0% | |
| ACCATATACACACACACACA+TGG | - | chr4_2:53322244-53322263 | None:intergenic | 40.0% | |
| ! | TTGTGTGTGACTTGTGAGAG+TGG | - | chr4_2:53316577-53316596 | None:intergenic | 45.0% |
| GAGGAACGGAGAGAAAGAAA+GGG | - | chr4_2:53316649-53316668 | None:intergenic | 45.0% | |
| TGAGGAACGGAGAGAAAGAA+AGG | - | chr4_2:53316650-53316669 | None:intergenic | 45.0% | |
| CTGGAGTGTGAGTTTGATCT+TGG | - | chr4_2:53316691-53316710 | None:intergenic | 45.0% | |
| CAAGATCAAACTCACACTCC+AGG | + | chr4_2:53316689-53316708 | Msa0606700:CDS | 45.0% | |
| CCGAGAAACCCAGAAAGAAA+AGG | - | chr4_2:53316811-53316830 | None:intergenic | 45.0% | |
| !! | ATAGGTTTGCTTGGTTCTGG+TGG | + | chr4_2:53317194-53317213 | Msa0606700:intron | 45.0% |
| CGGTCAACTTACATTGGACT+TGG | + | chr4_2:53317421-53317440 | Msa0606700:intron | 45.0% | |
| GTCTGTTGAAATGTGGTTGG+TGG | + | chr4_2:53317700-53317719 | Msa0606700:intron | 45.0% | |
| GTGAGATGAGAACTGATGAC+TGG | + | chr4_2:53317791-53317810 | Msa0606700:intron | 45.0% | |
| GATGAGAACTGATGACTGGT+TGG | + | chr4_2:53317795-53317814 | Msa0606700:intron | 45.0% | |
| ! | TGAGAACTGATGACTGGTTG+GGG | + | chr4_2:53317797-53317816 | Msa0606700:intron | 45.0% |
| ACTTTCAGGCGTGCAACTAT+GGG | - | chr4_2:53317950-53317969 | None:intergenic | 45.0% | |
| AGGGTATGGCTGAATATGGT+GGG | + | chr4_2:53318066-53318085 | Msa0606700:intron | 45.0% | |
| !! | TGGCTGAATATGGTGGGTTT+CGG | + | chr4_2:53318072-53318091 | Msa0606700:intron | 45.0% |
| GTTTCCAATATGGTGAGTGG+CGG | - | chr4_2:53318098-53318117 | None:intergenic | 45.0% | |
| GAGGTTTCCAATATGGTGAG+TGG | - | chr4_2:53318101-53318120 | None:intergenic | 45.0% | |
| GCCATGACACCTATTGGTAT+TGG | - | chr4_2:53318129-53318148 | None:intergenic | 45.0% | |
| AGTGAGAGATGCACTTCAGA+GGG | - | chr4_2:53318209-53318228 | None:intergenic | 45.0% | |
| AAGTGAGAGATGCACTTCAG+AGG | - | chr4_2:53318210-53318229 | None:intergenic | 45.0% | |
| GCAAAGCAAGGATGTGAGAT+TGG | - | chr4_2:53318462-53318481 | None:intergenic | 45.0% | |
| TCACATCCTTGCTTTGCTTC+AGG | + | chr4_2:53318465-53318484 | Msa0606700:intron | 45.0% | |
| CACATCCTTGCTTTGCTTCA+GGG | + | chr4_2:53318466-53318485 | Msa0606700:intron | 45.0% | |
| ! | GGCTTTAGCATCCTTACTCT+TGG | - | chr4_2:53318497-53318516 | None:intergenic | 45.0% |
| TCCTATAATTACCCTCTCCC+AGG | - | chr4_2:53318573-53318592 | None:intergenic | 45.0% | |
| CTACTTACTTCGACGCTTGA+TGG | + | chr4_2:53318713-53318732 | Msa0606700:intron | 45.0% | |
| GACGCTTGATGGAGCAATAT+CGG | + | chr4_2:53318724-53318743 | Msa0606700:intron | 45.0% | |
| CTTGATGGAGCAATATCGGA+CGG | + | chr4_2:53318728-53318747 | Msa0606700:intron | 45.0% | |
| ! | AGAGATTTTGTGGAAAGCCC+TGG | + | chr4_2:53318812-53318831 | Msa0606700:intron | 45.0% |
| AAGCTCCCTCATACATATCC+TGG | - | chr4_2:53318875-53318894 | None:intergenic | 45.0% | |
| AAGGACTTAAGGTTGACCCT+TGG | - | chr4_2:53318959-53318978 | None:intergenic | 45.0% | |
| ! | GCAGATGATGTAGTCTTGCT+TGG | + | chr4_2:53319050-53319069 | Msa0606700:intron | 45.0% |
| AGTCGAGGGAGGAGTTAAAT+GGG | + | chr4_2:53319075-53319094 | Msa0606700:intron | 45.0% | |
| TAGAAGCAAGACGGAGTATG+TGG | + | chr4_2:53319148-53319167 | Msa0606700:intron | 45.0% | |
| AACCTCAGCAAAAGGAGAAG+TGG | + | chr4_2:53319176-53319195 | Msa0606700:intron | 45.0% | |
| ACCTCAGCAAAAGGAGAAGT+GGG | + | chr4_2:53319177-53319196 | Msa0606700:intron | 45.0% | |
| AAGGAGAAGTGGGTCTACTT+TGG | + | chr4_2:53319187-53319206 | Msa0606700:intron | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr4_2:53319306-53319325 | Msa0606700:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr4_2:53319315-53319334 | Msa0606700:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr4_2:53319329-53319348 | Msa0606700:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr4_2:53319348-53319367 | None:intergenic | 45.0% | |
| CGGATATGAGAATGTTGCGA+TGG | + | chr4_2:53319483-53319502 | Msa0606700:intron | 45.0% | |
| AGAATGTTGCGATGGATGTG+TGG | + | chr4_2:53319491-53319510 | Msa0606700:intron | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | + | chr4_2:53319541-53319560 | Msa0606700:intron | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | + | chr4_2:53319542-53319561 | Msa0606700:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | + | chr4_2:53319543-53319562 | Msa0606700:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr4_2:53319635-53319654 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr4_2:53319658-53319677 | Msa0606700:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr4_2:53319668-53319687 | Msa0606700:intron | 45.0% | |
| CTATGGCGTCATTTGATCCA+TGG | + | chr4_2:53319782-53319801 | Msa0606700:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4_2:53319814-53319833 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4_2:53319815-53319834 | None:intergenic | 45.0% |
| TGATGAAAGCAAAGCAAGGC+TGG | - | chr4_2:53319938-53319957 | None:intergenic | 45.0% | |
| CATTAAGCGGAGAGCCTATT+AGG | - | chr4_2:53320993-53321012 | None:intergenic | 45.0% | |
| ! | TGAGTTGAACTATCCATGCC+AGG | + | chr4_2:53321277-53321296 | Msa0606700:intron | 45.0% |
| ! | ACTTCGGTTTGAACTAGTCC+TGG | - | chr4_2:53321298-53321317 | None:intergenic | 45.0% |
| GGATATTTCCCATCAGCATC+AGG | - | chr4_2:53321658-53321677 | None:intergenic | 45.0% | |
| CACGACACGAAGAGAAATTC+TGG | - | chr4_2:53321767-53321786 | None:intergenic | 45.0% | |
| CAGAATTTCTCTTCGTGTCG+TGG | + | chr4_2:53321765-53321784 | Msa0606700:intron | 45.0% | |
| GTTGCCATATAGCAGTCTGA+AGG | + | chr4_2:53321989-53322008 | Msa0606700:three_prime_UTR | 45.0% | |
| CATCCCTTCAGACTGCTATA+TGG | - | chr4_2:53321996-53322015 | None:intergenic | 45.0% | |
| CATATAGCAGTCTGAAGGGA+TGG | + | chr4_2:53321994-53322013 | Msa0606700:three_prime_UTR | 45.0% | |
| TAGGCTGTTTGTTTGGCACT+TGG | + | chr4_2:53322184-53322203 | Msa0606700:three_prime_UTR | 45.0% | |
| AGGCTGTTTGTTTGGCACTT+GGG | + | chr4_2:53322185-53322204 | Msa0606700:three_prime_UTR | 45.0% | |
| !!! | TTAACATTTTTTTTTTTTTA+AGG | + | chr4_2:53316870-53316889 | Msa0606700:intron | 5.0% |
| !!! | TAACATTTTTTTTTTTTTAA+GGG | + | chr4_2:53316871-53316890 | Msa0606700:intron | 5.0% |
| !! | ATAATAATAATAATAATAGT+AGG | - | chr4_2:53321862-53321881 | None:intergenic | 5.0% |
| ! | GTGACTTGTGAGAGTGGTTG+TGG | - | chr4_2:53316571-53316590 | None:intergenic | 50.0% |
| ACTCACGTGTGCGACAAATG+TGG | + | chr4_2:53316909-53316928 | Msa0606700:CDS | 50.0% | |
| !! | ATTGCTGATTCTCCGGACAG+TGG | + | chr4_2:53317260-53317279 | Msa0606700:CDS | 50.0% |
| CCTTGACTTAGTCCACTGTC+CGG | - | chr4_2:53317275-53317294 | None:intergenic | 50.0% | |
| CATTAAAAATGGGAGGCGGG+AGG | - | chr4_2:53317741-53317760 | None:intergenic | 50.0% | |
| ! | ATGACTGGTTGGGGTTGTGA+AGG | + | chr4_2:53317806-53317825 | Msa0606700:intron | 50.0% |
| CACTTTCAGGCGTGCAACTA+TGG | - | chr4_2:53317951-53317970 | None:intergenic | 50.0% | |
| CATAGTTGCACGCCTGAAAG+TGG | + | chr4_2:53317949-53317968 | Msa0606700:intron | 50.0% | |
| ! | TCCTTGTCTTCTATGGCGGA+TGG | + | chr4_2:53317983-53318002 | Msa0606700:intron | 50.0% |
| !! | TTGTCTTCTATGGCGGATGG+CGG | + | chr4_2:53317986-53318005 | Msa0606700:intron | 50.0% |
| ! | CATTAAGGCGGACGGAGTTT+TGG | - | chr4_2:53318034-53318053 | None:intergenic | 50.0% |
| ! | CTTAATGCGCTGATGTGGCA+GGG | + | chr4_2:53318047-53318066 | Msa0606700:intron | 50.0% |
| TGGCAGGGTATGGCTGAATA+TGG | + | chr4_2:53318062-53318081 | Msa0606700:intron | 50.0% | |
| CAGGGTATGGCTGAATATGG+TGG | + | chr4_2:53318065-53318084 | Msa0606700:intron | 50.0% | |
| TCCTTGCTTTGCTTCAGGGA+CGG | + | chr4_2:53318470-53318489 | Msa0606700:intron | 50.0% | |
| GCCTGGGAGAGGGTAATTAT+AGG | + | chr4_2:53318569-53318588 | Msa0606700:intron | 50.0% | |
| TGGAAAGCCCTGGAGAAGAA+AGG | + | chr4_2:53318822-53318841 | Msa0606700:intron | 50.0% | |
| GGAAAGCCCTGGAGAAGAAA+GGG | + | chr4_2:53318823-53318842 | Msa0606700:intron | 50.0% | |
| GAAAGCCCTGGAGAAGAAAG+GGG | + | chr4_2:53318824-53318843 | Msa0606700:intron | 50.0% | |
| ACTAGTGTGAGGACGCAAGA+TGG | + | chr4_2:53318897-53318916 | Msa0606700:intron | 50.0% | |
| CTAGTGTGAGGACGCAAGAT+GGG | + | chr4_2:53318898-53318917 | Msa0606700:intron | 50.0% | |
| TAGTGTGAGGACGCAAGATG+GGG | + | chr4_2:53318899-53318918 | Msa0606700:intron | 50.0% | |
| GACGGAACACATCCAAGAGT+TGG | + | chr4_2:53319007-53319026 | Msa0606700:intron | 50.0% | |
| !! | TACATCTCGGTGCCAACTCT+TGG | - | chr4_2:53319022-53319041 | None:intergenic | 50.0% |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | + | chr4_2:53319060-53319079 | Msa0606700:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | + | chr4_2:53319061-53319080 | Msa0606700:intron | 50.0% |
| GAGTCGAGGGAGGAGTTAAA+TGG | + | chr4_2:53319074-53319093 | Msa0606700:intron | 50.0% | |
| TAAATGGGAGGCTAGAGACC+TGG | + | chr4_2:53319090-53319109 | Msa0606700:intron | 50.0% | |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | + | chr4_2:53319113-53319132 | Msa0606700:intron | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr4_2:53319145-53319164 | None:intergenic | 50.0% | |
| ! | ACCCACTTCTCCTTTTGCTG+AGG | - | chr4_2:53319181-53319200 | None:intergenic | 50.0% |
| GAGAAGTGGGTCTACTTTGG+AGG | + | chr4_2:53319190-53319209 | Msa0606700:intron | 50.0% | |
| TGTTGTATGGTACGGAGCGT+TGG | + | chr4_2:53319423-53319442 | Msa0606700:intron | 50.0% | |
| ! | GTTGTATGGTACGGAGCGTT+GGG | + | chr4_2:53319424-53319443 | Msa0606700:intron | 50.0% |
| CACCATTAGAGAGAGAGTGG+GGG | + | chr4_2:53319544-53319563 | Msa0606700:intron | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | - | chr4_2:53319549-53319568 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_2:53319810-53319829 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4_2:53319816-53319835 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4_2:53319813-53319832 | Msa0606700:intron | 50.0% | |
| ! | TTGGAAGGGGTCCGTCTTTT+TGG | + | chr4_2:53320578-53320597 | Msa0606700:intron | 50.0% |
| GCAGCAGCATGCCAAAAAGA+CGG | - | chr4_2:53320592-53320611 | None:intergenic | 50.0% | |
| GCTGCTCTTACTCTCGTAAG+AGG | + | chr4_2:53320607-53320626 | Msa0606700:CDS | 50.0% | |
| CTTCAGGGACATTGTTGGTC+TGG | + | chr4_2:53320669-53320688 | Msa0606700:intron | 50.0% | |
| ! | GGCATTGAGTTCTGTCCCTT+TGG | + | chr4_2:53320752-53320771 | Msa0606700:intron | 50.0% |
| GGTTTGAACTAGTCCTGGCA+TGG | - | chr4_2:53321293-53321312 | None:intergenic | 50.0% | |
| AGTTTATCTTCCCTGGCTGC+CGG | + | chr4_2:53321367-53321386 | Msa0606700:intron | 50.0% | |
| AAGATTGGGACATCGAGCTC+CGG | - | chr4_2:53321389-53321408 | None:intergenic | 50.0% | |
| CAGTCAAGAAAGCCGGTGTA+TGG | - | chr4_2:53321679-53321698 | None:intergenic | 50.0% | |
| GACAGCACAGTCAAGAAAGC+CGG | - | chr4_2:53321686-53321705 | None:intergenic | 50.0% | |
| GGCACAATAGACAGGGAATC+CGG | - | chr4_2:53321746-53321765 | None:intergenic | 50.0% | |
| ! | GTGGTTGTGGAGAGTGTGAG+TGG | - | chr4_2:53316558-53316577 | None:intergenic | 55.0% |
| !! | CCGGACAGTGGACTAAGTCA+AGG | + | chr4_2:53317272-53317291 | Msa0606700:CDS | 55.0% |
| GCCATCCGCCATAGAAGACA+AGG | - | chr4_2:53317987-53318006 | None:intergenic | 55.0% | |
| CATCAGCGCATTAAGGCGGA+CGG | - | chr4_2:53318042-53318061 | None:intergenic | 55.0% | |
| ! | TCCGCCTTAATGCGCTGATG+TGG | + | chr4_2:53318042-53318061 | Msa0606700:intron | 55.0% |
| GCCACATCAGCGCATTAAGG+CGG | - | chr4_2:53318046-53318065 | None:intergenic | 55.0% | |
| CCTGCCACATCAGCGCATTA+AGG | - | chr4_2:53318049-53318068 | None:intergenic | 55.0% | |
| ! | CCTTAATGCGCTGATGTGGC+AGG | + | chr4_2:53318046-53318065 | Msa0606700:intron | 55.0% |
| ACCGTCCCTGAAGCAAAGCA+AGG | - | chr4_2:53318474-53318493 | None:intergenic | 55.0% | |
| TCAGGGACGGTCCAAGAGTA+AGG | + | chr4_2:53318483-53318502 | Msa0606700:intron | 55.0% | |
| TATGCCTGGGAGGTCGACTA+TGG | + | chr4_2:53318683-53318702 | Msa0606700:intron | 55.0% | |
| CCTCACCCCTTTCTTCTCCA+GGG | - | chr4_2:53318832-53318851 | None:intergenic | 55.0% | |
| CCTGGAGAAGAAAGGGGTGA+GGG | + | chr4_2:53318830-53318849 | Msa0606700:intron | 55.0% | |
| AGGGAGCTTCGACTAGTGTG+AGG | + | chr4_2:53318886-53318905 | Msa0606700:intron | 55.0% | |
| CGAGGGAGGAGTTAAATGGG+AGG | + | chr4_2:53319078-53319097 | Msa0606700:intron | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | - | chr4_2:53319123-53319142 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr4_2:53319142-53319161 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr4_2:53319139-53319158 | Msa0606700:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4_2:53319808-53319827 | Msa0606700:intron | 55.0% | |
| GGGCTGTATGCATCTGTCAC+TGG | + | chr4_2:53320254-53320273 | Msa0606700:CDS | 55.0% | |
| GCATCTGTCACTGGTCGACT+TGG | + | chr4_2:53320263-53320282 | Msa0606700:CDS | 55.0% | |
| GCCTCAACGAGCTTCGCAAA+CGG | + | chr4_2:53321949-53321968 | Msa0606700:CDS | 55.0% | |
| ACCGTTTGCGAAGCTCGTTG+AGG | - | chr4_2:53321953-53321972 | None:intergenic | 55.0% | |
| ! | TGCGCTGATGTGGCAGGGTA+TGG | + | chr4_2:53318052-53318071 | Msa0606700:intron | 60.0% |
| TCGGCCGCCACTCACCATAT+TGG | + | chr4_2:53318091-53318110 | Msa0606700:intron | 60.0% | |
| AGCGGCGCCATGACACCTAT+TGG | - | chr4_2:53318135-53318154 | None:intergenic | 60.0% | |
| GCTTCCATAGTCGACCTCCC+AGG | - | chr4_2:53318690-53318709 | None:intergenic | 60.0% | |
| CCCTGGAGAAGAAAGGGGTG+AGG | + | chr4_2:53318829-53318848 | Msa0606700:intron | 60.0% | |
| CCCTCACCCCTTTCTTCTCC+AGG | - | chr4_2:53318833-53318852 | None:intergenic | 60.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | + | chr4_2:53319064-53319083 | Msa0606700:intron | 60.0% |
| ATGGGAGGCTAGAGACCTGG+AGG | + | chr4_2:53319093-53319112 | Msa0606700:intron | 60.0% | |
| !! | CGCTTCTAAGGCTTGCCTCC+AGG | - | chr4_2:53319111-53319130 | None:intergenic | 60.0% |
| !! | GTATGGTACGGAGCGTTGGG+CGG | + | chr4_2:53319427-53319446 | Msa0606700:intron | 60.0% |
| ! | ACTAAGTGGGGTCGGCTCCA+TGG | - | chr4_2:53319802-53319821 | None:intergenic | 60.0% |
| ATGGAGCCGACCCCACTTAG+TGG | + | chr4_2:53319801-53319820 | Msa0606700:intron | 60.0% | |
| TGGAGCCGACCCCACTTAGT+GGG | + | chr4_2:53319802-53319821 | Msa0606700:intron | 60.0% | |
| !! | CTATGGCGGATGGCGGTCTG+TGG | + | chr4_2:53317993-53318012 | Msa0606700:intron | 65.0% |
| ACATCGAGCTCCGGCAGCCA+GGG | - | chr4_2:53321380-53321399 | None:intergenic | 65.0% | |
| GACATCGAGCTCCGGCAGCC+AGG | - | chr4_2:53321381-53321400 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53316552 | 53322366 | 53316552 | ID=Msa0606700;Name=Msa0606700 |
| chr4_2 | mRNA | 53316552 | 53322366 | 53316552 | ID=Msa0606700-mRNA-1;Parent=Msa0606700;Name=Msa0606700-mRNA-1;_AED=0.34;_eAED=0.34;_QI=128|0.57|0.62|1|0.57|0.62|8|392|245 |
| chr4_2 | exon | 53316552 | 53316710 | 53316552 | ID=Msa0606700-mRNA-1:exon:13148;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53316892 | 53317038 | 53316892 | ID=Msa0606700-mRNA-1:exon:13149;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53317198 | 53317335 | 53317198 | ID=Msa0606700-mRNA-1:exon:13150;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53318408 | 53318445 | 53318408 | ID=Msa0606700-mRNA-1:exon:13151;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53320233 | 53320294 | 53320233 | ID=Msa0606700-mRNA-1:exon:13152;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53320585 | 53320685 | 53320585 | ID=Msa0606700-mRNA-1:exon:13153;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53321572 | 53321753 | 53321572 | ID=Msa0606700-mRNA-1:exon:13154;Parent=Msa0606700-mRNA-1 |
| chr4_2 | exon | 53321936 | 53322366 | 53321936 | ID=Msa0606700-mRNA-1:exon:13155;Parent=Msa0606700-mRNA-1 |
| chr4_2 | five_prime_UTR | 53316552 | 53316679 | 53316552 | ID=Msa0606700-mRNA-1:five_prime_utr;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53316680 | 53316710 | 53316680 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53316892 | 53317038 | 53316892 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53317198 | 53317335 | 53317198 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53318408 | 53318445 | 53318408 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53320233 | 53320294 | 53320233 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53320585 | 53320685 | 53320585 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53321572 | 53321753 | 53321572 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | CDS | 53321936 | 53321974 | 53321936 | ID=Msa0606700-mRNA-1:cds;Parent=Msa0606700-mRNA-1 |
| chr4_2 | three_prime_UTR | 53321975 | 53322366 | 53321975 | ID=Msa0606700-mRNA-1:three_prime_utr;Parent=Msa0606700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
