Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686890 | XP_024628284.1 | 62.264 | 106 | 31 | 1 | 140 | 236 | 50 | 155 | 2.64e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686890 | sp|Q9C5M0|DTC_ARATH | 40.341 | 176 | 76 | 5 | 73 | 236 | 114 | 272 | 7.25e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686890 | G7LIQ7 | 62.264 | 106 | 31 | 1 | 140 | 236 | 12 | 117 | 3.33e-37 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606700 | Msa0686890 | 0.907440 | 5.056574e-81 | -8.615850e-47 |
| Msa0644410 | Msa0686890 | 0.807648 | 4.561136e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686890 | MtrunA17_Chr8g0377811 | 53.435 | 131 | 45 | 4 | 1 | 115 | 1 | 131 | 7.25e-33 | 126 |
| Msa0686890 | MtrunA17_Chr8g0378951 | 56.481 | 108 | 34 | 2 | 142 | 236 | 168 | 275 | 2.57e-32 | 119 |
| Msa0686890 | MtrunA17_Chr8g0379131 | 65.625 | 64 | 22 | 0 | 173 | 236 | 28 | 91 | 1.72e-22 | 89.0 |
| Msa0686890 | MtrunA17_Chr8g0378971 | 81.818 | 44 | 8 | 0 | 193 | 236 | 1 | 44 | 9.56e-22 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686890 | AT5G19760.1 | 40.341 | 176 | 76 | 5 | 73 | 236 | 114 | 272 | 7.37e-28 | 108 |
Find 69 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCCTAACAATAAGATTTA+TGG | 0.182276 | 4_4:+51512596 | Msa0686890:CDS |
| TGTTTCTCCTTGTCCTTAAA+AGG | 0.207571 | 4_4:+51517937 | Msa0686890:three_prime_UTR |
| GTCGAACTGTTGATTTCTTC+AGG | 0.264711 | 4_4:+51516293 | Msa0686890:CDS |
| TGTATAGGTTTGCTTGGTTC+TGG | 0.297670 | 4_4:+51512830 | Msa0686890:intron |
| ATAACAAGGACCTGGAGTTT+TGG | 0.303588 | 4_4:-51512666 | None:intergenic |
| GTTCCATAAATCTTATTGTT+AGG | 0.303652 | 4_4:-51512599 | None:intergenic |
| ATGAGCATAGGCTGTTTGTT+TGG | 0.365000 | 4_4:+51517823 | Msa0686890:three_prime_UTR |
| CATCCCTTCAGACTGCTATA+TGG | 0.376859 | 4_4:-51517639 | None:intergenic |
| GGTATATTAGCTATGTTTCT+CGG | 0.386534 | 4_4:+51515872 | Msa0686890:CDS |
| ACCATGTGTGTGTATGTATA+TGG | 0.389725 | 4_4:+51517886 | Msa0686890:three_prime_UTR |
| TTCCTTATTGTAACCCTCAA+TGG | 0.392661 | 4_4:-51512621 | None:intergenic |
| CTGGAGTGTGAGTTTGATCT+TGG | 0.396345 | 4_4:-51512326 | None:intergenic |
| AACCATTGAGGGTTACAATA+AGG | 0.404903 | 4_4:+51512619 | Msa0686890:CDS |
| TTTACAATGTGATTAACATC+AGG | 0.409452 | 4_4:+51517960 | Msa0686890:three_prime_UTR |
| TATATTTGTATAGGTTTGCT+TGG | 0.410806 | 4_4:+51512824 | Msa0686890:intron |
| TGAGGAACGGAGAGAAAGAA+AGG | 0.430222 | 4_4:-51512285 | None:intergenic |
| GGATATTTCCCATCAGCATC+AGG | 0.442524 | 4_4:-51517295 | None:intergenic |
| CAGTCAAGAAAGCCGGTGTA+TGG | 0.443070 | 4_4:-51517316 | None:intergenic |
| AAGATTTATGGAACCATTGA+GGG | 0.445167 | 4_4:+51512608 | Msa0686890:CDS |
| GATTTCTTCAGGGACATTGT+TGG | 0.449828 | 4_4:+51516304 | Msa0686890:CDS |
| GTGACTTGTGAGAGTGGTTG+TGG | 0.449968 | 4_4:-51512206 | None:intergenic |
| TTTGGAATCATCATCTGAAT+GGG | 0.453126 | 4_4:-51512648 | None:intergenic |
| TAGGCTGTTTGTTTGGCACT+TGG | 0.459905 | 4_4:+51517830 | Msa0686890:three_prime_UTR |
| CACACATGGTATTTGACATA+AGG | 0.466035 | 4_4:-51517873 | None:intergenic |
| GAAATTAATTGCTGATTCTC+CGG | 0.469771 | 4_4:+51512892 | Msa0686890:CDS |
| TGAATCATCACATATTCAAA+TGG | 0.473762 | 4_4:-51517256 | None:intergenic |
| TCGAACTGTTGATTTCTTCA+GGG | 0.475220 | 4_4:+51516294 | Msa0686890:CDS |
| GGGCTGTATGCATCTGTCAC+TGG | 0.483360 | 4_4:+51515893 | Msa0686890:CDS |
| GGCACAATAGACAGGGAATC+CGG | 0.484320 | 4_4:-51517383 | None:intergenic |
| TAAGATTTATGGAACCATTG+AGG | 0.485445 | 4_4:+51512607 | Msa0686890:CDS |
| AGGCTGTTTGTTTGGCACTT+GGG | 0.486346 | 4_4:+51517831 | Msa0686890:three_prime_UTR |
| GTATATTAGCTATGTTTCTC+GGG | 0.498154 | 4_4:+51515873 | Msa0686890:CDS |
| GCATCTGTCACTGGTCGACT+TGG | 0.499136 | 4_4:+51515902 | Msa0686890:CDS |
| AATTCTGAGAAGTGTAATGC+TGG | 0.499615 | 4_4:+51512860 | Msa0686890:CDS |
| GCATCCTGTGTTGAAATAAG+TGG | 0.503203 | 4_4:-51514061 | None:intergenic |
| AAGTGTAATGCTGGAATTGA+AGG | 0.504018 | 4_4:+51512869 | Msa0686890:CDS |
| TTGTGTGTGACTTGTGAGAG+TGG | 0.506363 | 4_4:-51512212 | None:intergenic |
| GCTGCTCTTACTCTCGTAAG+AGG | 0.507408 | 4_4:+51516247 | Msa0686890:CDS |
| TTATGCATTTAGACGAAATG+AGG | 0.517532 | 4_4:-51512303 | None:intergenic |
| GTGGTTGTGGAGAGTGTGAG+TGG | 0.525907 | 4_4:-51512193 | None:intergenic |
| TTATTGTTAGGACTAGGATG+TGG | 0.538483 | 4_4:-51512587 | None:intergenic |
| ATTTAAAGTGAACACACTCA+TGG | 0.539663 | 4_4:-51517682 | None:intergenic |
| GACAGCACAGTCAAGAAAGC+CGG | 0.546333 | 4_4:-51517323 | None:intergenic |
| GAGGAACGGAGAGAAAGAAA+GGG | 0.547690 | 4_4:-51512284 | None:intergenic |
| GCCTCAACGAGCTTCGCAAA+CGG | 0.548237 | 4_4:+51517595 | Msa0686890:CDS |
| GATATTTGCTTTATGAGCAT+AGG | 0.557468 | 4_4:+51517811 | Msa0686890:three_prime_UTR |
| ATAGTTACATTGAACTCGCA+TGG | 0.570134 | 4_4:-51517788 | None:intergenic |
| CCTTGACTTAGTCCACTGTC+CGG | 0.573901 | 4_4:-51512911 | None:intergenic |
| ATAGGTTTGCTTGGTTCTGG+TGG | 0.574253 | 4_4:+51512833 | Msa0686890:intron |
| TAAATCTTATTGTTAGGACT+AGG | 0.575737 | 4_4:-51512593 | None:intergenic |
| GATGATGATTCCAAAACTCC+AGG | 0.579919 | 4_4:+51512656 | Msa0686890:CDS |
| CAAGATCAAACTCACACTCC+AGG | 0.582539 | 4_4:+51512327 | Msa0686890:CDS |
| CAAGAACATAATTTGAACTC+AGG | 0.586642 | 4_4:+51512953 | Msa0686890:CDS |
| TTACAATGTGATTAACATCA+GGG | 0.593201 | 4_4:+51517961 | Msa0686890:three_prime_UTR |
| CATATAGCAGTCTGAAGGGA+TGG | 0.593862 | 4_4:+51517640 | Msa0686890:three_prime_UTR |
| AACGGTAGAGTAGTTAGAGA+TGG | 0.609130 | 4_4:+51517613 | Msa0686890:exon |
| GAGTCCACTTATTTCAACAC+AGG | 0.610981 | 4_4:+51514057 | Msa0686890:CDS |
| ATTGCTGATTCTCCGGACAG+TGG | 0.612845 | 4_4:+51512899 | Msa0686890:CDS |
| AGTGTAATGCTGGAATTGAA+GGG | 0.618170 | 4_4:+51512870 | Msa0686890:CDS |
| CCGGACAGTGGACTAAGTCA+AGG | 0.621855 | 4_4:+51512911 | Msa0686890:CDS |
| ATATGCAACCTGATGCTGAT+GGG | 0.629454 | 4_4:+51517287 | Msa0686890:CDS |
| TTGCCATATAGCAGTCTGAA+GGG | 0.637844 | 4_4:+51517636 | Msa0686890:three_prime_UTR |
| CATTTAGACGAAATGAGGAA+CGG | 0.648468 | 4_4:-51512298 | None:intergenic |
| AATATGCAACCTGATGCTGA+TGG | 0.649283 | 4_4:+51517286 | Msa0686890:CDS |
| ACCGTTTGCGAAGCTCGTTG+AGG | 0.661509 | 4_4:-51517596 | None:intergenic |
| ACCATATACATACACACACA+TGG | 0.662630 | 4_4:-51517887 | None:intergenic |
| GATGGGAAATATCCATACAC+CGG | 0.663159 | 4_4:+51517304 | Msa0686890:CDS |
| ACTCACGTGTGCGACAAATG+TGG | 0.663409 | 4_4:+51512548 | Msa0686890:CDS |
| GTTGCCATATAGCAGTCTGA+AGG | 0.663922 | 4_4:+51517635 | Msa0686890:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTATGTTATTCTTA+CGG | + | chr4_4:51512418-51512437 | Msa0686890:intron | 10.0% |
| !!! | AATCATTTTTCATTAAAAAT+GGG | - | chr4_4:51513390-51513409 | None:intergenic | 10.0% |
| !!! | AAATCATTTTTCATTAAAAA+TGG | - | chr4_4:51513391-51513410 | None:intergenic | 10.0% |
| !! | TTTCATTGTATATTAATAAA+AGG | + | chr4_4:51514186-51514205 | Msa0686890:intron | 10.0% |
| !! | ATTGACTATTAAAAATTATT+GGG | + | chr4_4:51515551-51515570 | Msa0686890:intron | 10.0% |
| !! | TTCAAAATTTATTTATTGTT+AGG | + | chr4_4:51516371-51516390 | Msa0686890:intron | 10.0% |
| !! | TTATATTTATATATTGTTCA+TGG | + | chr4_4:51517556-51517575 | Msa0686890:intron | 10.0% |
| !! | AATAATAGGAAATGAAATTA+TGG | + | chr4_4:51512735-51512754 | Msa0686890:intron | 15.0% |
| !! | TTAATGTGTTATATTTGTAT+AGG | + | chr4_4:51512815-51512834 | Msa0686890:intron | 15.0% |
| !!! | ACTATTTATTTGAAATTCAA+CGG | + | chr4_4:51513548-51513567 | Msa0686890:intron | 15.0% |
| !! | CAATGAAAAATAATATTTGT+TGG | - | chr4_4:51514174-51514193 | None:intergenic | 15.0% |
| !! | TGTTGTTGTATATTAATAAA+AGG | + | chr4_4:51515476-51515495 | Msa0686890:intron | 15.0% |
| !!! | TAAAGAGAATTTTAGTATAA+GGG | - | chr4_4:51515525-51515544 | None:intergenic | 15.0% |
| !!! | ATAATTTTTAATAGTCAATG+AGG | - | chr4_4:51515550-51515569 | None:intergenic | 15.0% |
| !!! | CATTGACTATTAAAAATTAT+TGG | + | chr4_4:51515550-51515569 | Msa0686890:intron | 15.0% |
| !!! | TTTTAACTCTTTTTTTATGT+TGG | + | chr4_4:51516199-51516218 | Msa0686890:intron | 15.0% |
| !! | AAAAATAAATCTCAACTTTA+TGG | + | chr4_4:51516971-51516990 | Msa0686890:intron | 15.0% |
| !! | TTAACATTCCAATATATTGA+AGG | + | chr4_4:51512788-51512807 | Msa0686890:intron | 20.0% |
| !! | TTAACAAACCTTCAATATAT+TGG | - | chr4_4:51512799-51512818 | None:intergenic | 20.0% |
| !! | ATTTAATGACTTTATGCTTA+AGG | + | chr4_4:51513269-51513288 | Msa0686890:intron | 20.0% |
| !! | ATAAAATGCATATTCAATGT+TGG | - | chr4_4:51513953-51513972 | None:intergenic | 20.0% |
| !!! | GAAAAATAATATTTGTTGGT+AGG | - | chr4_4:51514170-51514189 | None:intergenic | 20.0% |
| !! | AAAACTAAAGTGAAAAGATA+AGG | - | chr4_4:51514617-51514636 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCACTTTAGTTT+TGG | + | chr4_4:51514616-51514635 | Msa0686890:intron | 20.0% |
| !!! | CTAAAGAGAATTTTAGTATA+AGG | - | chr4_4:51515526-51515545 | None:intergenic | 20.0% |
| !! | CTTATACTAAAATTCTCTTT+AGG | + | chr4_4:51515524-51515543 | Msa0686890:intron | 20.0% |
| !!! | CAAGTTTATTTTGACATTTT+AGG | + | chr4_4:51515676-51515695 | Msa0686890:intron | 20.0% |
| !!! | CTTGTTTATTTTGACATTTT+AGG | + | chr4_4:51515761-51515780 | Msa0686890:intron | 20.0% |
| !!! | TATTTTGACATTTTAGGATT+TGG | + | chr4_4:51515767-51515786 | Msa0686890:intron | 20.0% |
| !! | TAAATTCATACCTAAACAAA+GGG | - | chr4_4:51515822-51515841 | None:intergenic | 20.0% |
| !!! | TATCGTTTTAACTTACTTTA+AGG | + | chr4_4:51516168-51516187 | Msa0686890:intron | 20.0% |
| !!! | ATCGTTTTAACTTACTTTAA+GGG | + | chr4_4:51516169-51516188 | Msa0686890:intron | 20.0% |
| !! | TATTCTATTTACTAGCTAAT+TGG | + | chr4_4:51516599-51516618 | Msa0686890:intron | 20.0% |
| !! | GACTCAATTAATAAAAGATT+GGG | - | chr4_4:51517043-51517062 | None:intergenic | 20.0% |
| !! | AGACTCAATTAATAAAAGAT+TGG | - | chr4_4:51517044-51517063 | None:intergenic | 20.0% |
| ! | AAAAAACGCTTAGAGAAAAA+AGG | - | chr4_4:51512251-51512270 | None:intergenic | 25.0% |
| ! | AAGAGACATTAAAGAGAAAA+AGG | - | chr4_4:51512358-51512377 | None:intergenic | 25.0% |
| ! | AATATCATCTTTGTGTCAAA+AGG | + | chr4_4:51512484-51512503 | Msa0686890:intron | 25.0% |
| ! | ATATCATCTTTGTGTCAAAA+GGG | + | chr4_4:51512485-51512504 | Msa0686890:intron | 25.0% |
| ! | TAAATCTTATTGTTAGGACT+AGG | - | chr4_4:51512596-51512615 | None:intergenic | 25.0% |
| ! | AGTCCTAACAATAAGATTTA+TGG | + | chr4_4:51512596-51512615 | Msa0686890:CDS | 25.0% |
| ! | GTTCCATAAATCTTATTGTT+AGG | - | chr4_4:51512602-51512621 | None:intergenic | 25.0% |
| ! | ATTGCAAAGTTTCTATAACA+AGG | - | chr4_4:51512683-51512702 | None:intergenic | 25.0% |
| !! | TATATTTGTATAGGTTTGCT+TGG | + | chr4_4:51512824-51512843 | Msa0686890:intron | 25.0% |
| ! | TGCTGGCATAATTAAAAATT+TGG | + | chr4_4:51513171-51513190 | Msa0686890:intron | 25.0% |
| ! | GCTGGCATAATTAAAAATTT+GGG | + | chr4_4:51513172-51513191 | Msa0686890:intron | 25.0% |
| ! | TTATGCTTAAGGTAAAAGTT+TGG | + | chr4_4:51513280-51513299 | Msa0686890:intron | 25.0% |
| !! | CATTTTTCATTAAAAATGGG+AGG | - | chr4_4:51513387-51513406 | None:intergenic | 25.0% |
| !!! | TCAAATAAATAGTTCTAGCT+TGG | - | chr4_4:51513541-51513560 | None:intergenic | 25.0% |
| !! | AATCCAGTTTATGTGTATTT+TGG | + | chr4_4:51513880-51513899 | Msa0686890:intron | 25.0% |
| ! | ATTCCAAAATACACATAAAC+TGG | - | chr4_4:51513886-51513905 | None:intergenic | 25.0% |
| ! | TTGTATATTAATAAAAGGCC+TGG | + | chr4_4:51514191-51514210 | Msa0686890:intron | 25.0% |
| ! | TGTATATTAATAAAAGGCCT+GGG | + | chr4_4:51514192-51514211 | Msa0686890:intron | 25.0% |
| !!! | ACACTTAGTTTTCATTGATT+TGG | + | chr4_4:51514403-51514422 | Msa0686890:intron | 25.0% |
| ! | TATTGTTATGGGAAAATCTA+CGG | - | chr4_4:51514567-51514586 | None:intergenic | 25.0% |
| ! | ATATTTAAACCGTGTAACTT+GGG | - | chr4_4:51514879-51514898 | None:intergenic | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | + | chr4_4:51514882-51514901 | Msa0686890:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr4_4:51515218-51515237 | Msa0686890:intron | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr4_4:51515360-51515379 | Msa0686890:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr4_4:51515400-51515419 | None:intergenic | 25.0% |
| ! | ATTATCAACGCAATACTTAT+CGG | - | chr4_4:51515707-51515726 | None:intergenic | 25.0% |
| !! | TTTCATTTATCCCTTTGTTT+AGG | + | chr4_4:51515809-51515828 | Msa0686890:intron | 25.0% |
| ! | GTAAATTCATACCTAAACAA+AGG | - | chr4_4:51515823-51515842 | None:intergenic | 25.0% |
| ! | TTCGGAGAAGAAAAAAAAAA+AGG | - | chr4_4:51516081-51516100 | None:intergenic | 25.0% |
| !!! | AACTCTTTTTTTATGTTGGA+AGG | + | chr4_4:51516203-51516222 | Msa0686890:intron | 25.0% |
| !!! | ACTCTTTTTTTATGTTGGAA+GGG | + | chr4_4:51516204-51516223 | Msa0686890:intron | 25.0% |
| ! | ATGAAATAGACAAAACCAAA+GGG | - | chr4_4:51516410-51516429 | None:intergenic | 25.0% |
| ! | AATGAAATAGACAAAACCAA+AGG | - | chr4_4:51516411-51516430 | None:intergenic | 25.0% |
| !! | TTTTAGTATGTCTATGTTGT+TGG | + | chr4_4:51516434-51516453 | Msa0686890:intron | 25.0% |
| ! | ATTAACAACATAGTATCTCA+TGG | + | chr4_4:51516545-51516564 | Msa0686890:intron | 25.0% |
| ! | TAGCTAGTAAATAGAATAGT+TGG | - | chr4_4:51516597-51516616 | None:intergenic | 25.0% |
| !! | ATAAATACCATTTTGTGTAG+AGG | + | chr4_4:51516888-51516907 | Msa0686890:intron | 25.0% |
| !! | TAAATACCATTTTGTGTAGA+GGG | + | chr4_4:51516889-51516908 | Msa0686890:intron | 25.0% |
| !! | TTTTATGAAGTTGAACACTT+CGG | - | chr4_4:51516954-51516973 | None:intergenic | 25.0% |
| !! | TGCTATTGAATATTTTGTTC+AGG | + | chr4_4:51517190-51517209 | Msa0686890:intron | 25.0% |
| ! | TGAATCATCACATATTCAAA+TGG | - | chr4_4:51517259-51517278 | None:intergenic | 25.0% |
| ! | ATTTATATATTGTTCATGGC+AGG | + | chr4_4:51517560-51517579 | Msa0686890:intron | 25.0% |
| !! | ATCACATTGTAAACCTTTTA+AGG | - | chr4_4:51517953-51517972 | None:intergenic | 25.0% |
| ! | TTTACAATGTGATTAACATC+AGG | + | chr4_4:51517960-51517979 | Msa0686890:three_prime_UTR | 25.0% |
| ! | TTACAATGTGATTAACATCA+GGG | + | chr4_4:51517961-51517980 | Msa0686890:three_prime_UTR | 25.0% |
| TTATGCATTTAGACGAAATG+AGG | - | chr4_4:51512306-51512325 | None:intergenic | 30.0% | |
| TAAGATTTATGGAACCATTG+AGG | + | chr4_4:51512607-51512626 | Msa0686890:CDS | 30.0% | |
| AAGATTTATGGAACCATTGA+GGG | + | chr4_4:51512608-51512627 | Msa0686890:CDS | 30.0% | |
| ! | TTTGGAATCATCATCTGAAT+GGG | - | chr4_4:51512651-51512670 | None:intergenic | 30.0% |
| !!! | TTTTGGAATCATCATCTGAA+TGG | - | chr4_4:51512652-51512671 | None:intergenic | 30.0% |
| ! | CATTGCTGTTGAGAAATAAT+AGG | + | chr4_4:51512721-51512740 | Msa0686890:intron | 30.0% |
| !! | GAAATTAATTGCTGATTCTC+CGG | + | chr4_4:51512892-51512911 | Msa0686890:CDS | 30.0% |
| CAAGAACATAATTTGAACTC+AGG | + | chr4_4:51512953-51512972 | Msa0686890:CDS | 30.0% | |
| TAGCTTCTTCATGAAAATCA+CGG | + | chr4_4:51513040-51513059 | Msa0686890:intron | 30.0% | |
| AAGTCATTAAATTCTCGACA+AGG | - | chr4_4:51513261-51513280 | None:intergenic | 30.0% | |
| TTTCATTGTCTGTTGAAATG+TGG | + | chr4_4:51513332-51513351 | Msa0686890:intron | 30.0% | |
| ! | TTTTCATTAAAAATGGGAGG+CGG | - | chr4_4:51513384-51513403 | None:intergenic | 30.0% |
| ! | TTGACTTTTCTCAACATGTT+AGG | + | chr4_4:51513505-51513524 | Msa0686890:intron | 30.0% |
| ! | TGACTTTTCTCAACATGTTA+GGG | + | chr4_4:51513506-51513525 | Msa0686890:intron | 30.0% |
| TTATAGAATTGCGGTTAAAG+CGG | - | chr4_4:51513792-51513811 | None:intergenic | 30.0% | |
| AAACCAGTGTTATAGAATTG+CGG | - | chr4_4:51513801-51513820 | None:intergenic | 30.0% | |
| ATTATATCTCTCTCATTCCA+AGG | + | chr4_4:51513976-51513995 | Msa0686890:intron | 30.0% | |
| TACAGATAAGAAACAAACCT+TGG | - | chr4_4:51513996-51514015 | None:intergenic | 30.0% | |
| GCAGCTGTGAAAAAAATTAT+CGG | - | chr4_4:51514031-51514050 | None:intergenic | 30.0% | |
| !!! | AGTTTTCATTGATTTGGAGA+AGG | + | chr4_4:51514409-51514428 | Msa0686890:intron | 30.0% |
| ! | GTAGATTTTCCCATAACAAT+AGG | + | chr4_4:51514566-51514585 | Msa0686890:intron | 30.0% |
| AGTGAAAAGATAAGGACTTA+AGG | - | chr4_4:51514609-51514628 | None:intergenic | 30.0% | |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | + | chr4_4:51514628-51514647 | Msa0686890:intron | 30.0% |
| TATTTAAACCGTGTAACTTG+GGG | - | chr4_4:51514878-51514897 | None:intergenic | 30.0% | |
| GATATTTAAACCGTGTAACT+TGG | - | chr4_4:51514880-51514899 | None:intergenic | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | + | chr4_4:51514881-51514900 | Msa0686890:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr4_4:51515214-51515233 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr4_4:51515284-51515303 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr4_4:51515285-51515304 | Msa0686890:intron | 30.0% | |
| ! | TTTTCTAATGGTTTCTCGAA+TGG | - | chr4_4:51515353-51515372 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr4_4:51515365-51515384 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr4_4:51515404-51515423 | Msa0686890:intron | 30.0% |
| GGTATATTAGCTATGTTTCT+CGG | + | chr4_4:51515872-51515891 | Msa0686890:CDS | 30.0% | |
| GTATATTAGCTATGTTTCTC+GGG | + | chr4_4:51515873-51515892 | Msa0686890:CDS | 30.0% | |
| !! | CTGTTTTGTCTTTTTGACTA+GGG | + | chr4_4:51516043-51516062 | Msa0686890:intron | 30.0% |
| !! | TGTTTTGTCTTTTTGACTAG+GGG | + | chr4_4:51516044-51516063 | Msa0686890:intron | 30.0% |
| TCCGAATAAACACACATAAA+TGG | + | chr4_4:51516095-51516114 | Msa0686890:intron | 30.0% | |
| CCCATTTATGTGTGTTTATT+CGG | - | chr4_4:51516099-51516118 | None:intergenic | 30.0% | |
| CCGAATAAACACACATAAAT+GGG | + | chr4_4:51516096-51516115 | Msa0686890:intron | 30.0% | |
| !!! | CTCTTTTTTTATGTTGGAAG+GGG | + | chr4_4:51516205-51516224 | Msa0686890:intron | 30.0% |
| TATCTGCTATCATGCTATAA+CGG | + | chr4_4:51516500-51516519 | Msa0686890:intron | 30.0% | |
| ! | TATCATGCTATAACGGTTTT+TGG | + | chr4_4:51516507-51516526 | Msa0686890:intron | 30.0% |
| AATTGGTGTGATTACCTAAT+AGG | + | chr4_4:51516616-51516635 | Msa0686890:intron | 30.0% | |
| ACATCTACAAGTACATTAAG+CGG | - | chr4_4:51516646-51516665 | None:intergenic | 30.0% | |
| AGTTTCTGATTGTTTGCAAT+AGG | + | chr4_4:51516690-51516709 | Msa0686890:intron | 30.0% | |
| !!! | TTGTATTTTGCTTTTTCCGT+TGG | + | chr4_4:51516746-51516765 | Msa0686890:intron | 30.0% |
| !!! | TGTATTTTGCTTTTTCCGTT+GGG | + | chr4_4:51516747-51516766 | Msa0686890:intron | 30.0% |
| ! | GTCAAAATTTTGAATGCTGA+AGG | + | chr4_4:51517343-51517362 | Msa0686890:CDS | 30.0% |
| ! | ATTTAAAGTGAACACACTCA+TGG | - | chr4_4:51517685-51517704 | None:intergenic | 30.0% |
| GATATTTGCTTTATGAGCAT+AGG | + | chr4_4:51517811-51517830 | Msa0686890:three_prime_UTR | 30.0% | |
| !! | TTGTAAACCTTTTAAGGACA+AGG | - | chr4_4:51517947-51517966 | None:intergenic | 30.0% |
| !! | ATTAACATCAGGGTATTTTG+TGG | + | chr4_4:51517971-51517990 | Msa0686890:three_prime_UTR | 30.0% |
| GCTTAGAGAAAAAAGGAAGA+AGG | - | chr4_4:51512244-51512263 | None:intergenic | 35.0% | |
| CATTTAGACGAAATGAGGAA+CGG | - | chr4_4:51512301-51512320 | None:intergenic | 35.0% | |
| !! | AAAGAGAAAAAGGAAGTACC+TGG | - | chr4_4:51512348-51512367 | None:intergenic | 35.0% |
| TTATTGTTAGGACTAGGATG+TGG | - | chr4_4:51512590-51512609 | None:intergenic | 35.0% | |
| AACCATTGAGGGTTACAATA+AGG | + | chr4_4:51512619-51512638 | Msa0686890:CDS | 35.0% | |
| TTCCTTATTGTAACCCTCAA+TGG | - | chr4_4:51512624-51512643 | None:intergenic | 35.0% | |
| AAGTTTCTATAACAAGGACC+TGG | - | chr4_4:51512677-51512696 | None:intergenic | 35.0% | |
| ! | AATTCTGAGAAGTGTAATGC+TGG | + | chr4_4:51512860-51512879 | Msa0686890:CDS | 35.0% |
| AAGTGTAATGCTGGAATTGA+AGG | + | chr4_4:51512869-51512888 | Msa0686890:CDS | 35.0% | |
| AGTGTAATGCTGGAATTGAA+GGG | + | chr4_4:51512870-51512889 | Msa0686890:CDS | 35.0% | |
| ! | TGAACTCAGGTACTCTTTTA+AGG | + | chr4_4:51512966-51512985 | Msa0686890:intron | 35.0% |
| AAATCACGGTCAACTTACAT+TGG | + | chr4_4:51513054-51513073 | Msa0686890:intron | 35.0% | |
| ACTAAGTAAACGACTATGCT+TGG | - | chr4_4:51513115-51513134 | None:intergenic | 35.0% | |
| ATTGTCTGTTGAAATGTGGT+TGG | + | chr4_4:51513336-51513355 | Msa0686890:intron | 35.0% | |
| TTTCATTAAAAATGGGAGGC+GGG | - | chr4_4:51513383-51513402 | None:intergenic | 35.0% | |
| ! | ACAAAAGTACATCCACTTTC+AGG | - | chr4_4:51513603-51513622 | None:intergenic | 35.0% |
| ! | ACTTTTGTCCTTGTCTTCTA+TGG | + | chr4_4:51513615-51513634 | Msa0686890:intron | 35.0% |
| TAACCGCAATTCTATAACAC+TGG | + | chr4_4:51513795-51513814 | Msa0686890:intron | 35.0% | |
| AATGCATATTCAATGTTGGC+AGG | - | chr4_4:51513949-51513968 | None:intergenic | 35.0% | |
| ATGAGTCATACCATGAAGTA+AGG | + | chr4_4:51514243-51514262 | Msa0686890:intron | 35.0% | |
| TGAGTCATACCATGAAGTAA+GGG | + | chr4_4:51514244-51514263 | Msa0686890:intron | 35.0% | |
| AAGAAAAGAGACTCACGTTA+CGG | + | chr4_4:51514283-51514302 | Msa0686890:intron | 35.0% | |
| !!! | AACCAATTTGGTTTTATGCC+TGG | + | chr4_4:51514308-51514327 | Msa0686890:intron | 35.0% |
| !!! | ACCAATTTGGTTTTATGCCT+GGG | + | chr4_4:51514309-51514328 | Msa0686890:intron | 35.0% |
| ! | AAGTACCTAGAGAGATTTTG+TGG | + | chr4_4:51514441-51514460 | Msa0686890:intron | 35.0% |
| TGCATATATTAGAGCTATCC+AGG | + | chr4_4:51514493-51514512 | Msa0686890:intron | 35.0% | |
| ! | TCTGCAAAAAGCATACATCT+CGG | - | chr4_4:51514674-51514693 | None:intergenic | 35.0% |
| ATATCATACCCCAAGTTACA+CGG | + | chr4_4:51514867-51514886 | Msa0686890:intron | 35.0% | |
| TACATCATCGTATTCAAGCT+GGG | + | chr4_4:51514942-51514961 | Msa0686890:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr4_4:51515007-51515026 | Msa0686890:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr4_4:51515016-51515035 | None:intergenic | 35.0% | |
| AGCTGAAAGGAAAGTTCTAT+CGG | + | chr4_4:51515020-51515039 | Msa0686890:intron | 35.0% | |
| ACCAACAATGTTGTATGGTA+CGG | + | chr4_4:51515054-51515073 | Msa0686890:intron | 35.0% | |
| TGAGAGTAAAGTAAGTGTAG+CGG | + | chr4_4:51515102-51515121 | Msa0686890:intron | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr4_4:51515155-51515174 | Msa0686890:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr4_4:51515207-51515226 | Msa0686890:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr4_4:51515227-51515246 | Msa0686890:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr4_4:51515232-51515251 | Msa0686890:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr4_4:51515288-51515307 | Msa0686890:intron | 35.0% | |
| ! | GTTTCTCGAATGGTTTTCTT+AGG | - | chr4_4:51515343-51515362 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr4_4:51515372-51515391 | Msa0686890:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr4_4:51515384-51515403 | Msa0686890:intron | 35.0% |
| !!! | ACCTTTTTTGTCTGCATATG+AGG | - | chr4_4:51515502-51515521 | None:intergenic | 35.0% |
| ! | ATGATGATGAAAGCAAAGCA+AGG | - | chr4_4:51515581-51515600 | None:intergenic | 35.0% |
| TAAACTGAATCACTTCATGC+AGG | + | chr4_4:51515850-51515869 | Msa0686890:intron | 35.0% | |
| AAACTGAATCACTTCATGCA+GGG | + | chr4_4:51515851-51515870 | Msa0686890:intron | 35.0% | |
| TGTTCAGTGTTCAGTACAAT+TGG | + | chr4_4:51515954-51515973 | Msa0686890:intron | 35.0% | |
| !! | GCTGTTTTGTCTTTTTGACT+AGG | + | chr4_4:51516042-51516061 | Msa0686890:intron | 35.0% |
| !! | TCGAACTGTTGATTTCTTCA+GGG | + | chr4_4:51516294-51516313 | Msa0686890:CDS | 35.0% |
| !!! | GCTATAACGGTTTTTGGTTT+TGG | + | chr4_4:51516513-51516532 | Msa0686890:intron | 35.0% |
| CTACTCTCTAAATAACTTCC+TGG | + | chr4_4:51516571-51516590 | Msa0686890:intron | 35.0% | |
| AGTAAATAGAATAGTTGGCC+AGG | - | chr4_4:51516592-51516611 | None:intergenic | 35.0% | |
| GCTATCAAGATTATACCCAA+CGG | - | chr4_4:51516765-51516784 | None:intergenic | 35.0% | |
| ATTCAACCCTCTACACAAAA+TGG | - | chr4_4:51516898-51516917 | None:intergenic | 35.0% | |
| CTCAACTTTATGGCTCAATT+TGG | + | chr4_4:51516981-51517000 | Msa0686890:intron | 35.0% | |
| !!! | GGAGCTTTGAAATTTTACAC+CGG | + | chr4_4:51517364-51517383 | Msa0686890:CDS | 35.0% |
| AAATTCTGGCACAATAGACA+GGG | - | chr4_4:51517393-51517412 | None:intergenic | 35.0% | |
| ATAGTTACATTGAACTCGCA+TGG | - | chr4_4:51517791-51517810 | None:intergenic | 35.0% | |
| CACACATGGTATTTGACATA+AGG | - | chr4_4:51517876-51517895 | None:intergenic | 35.0% | |
| ACCATGTGTGTGTATGTATA+TGG | + | chr4_4:51517886-51517905 | Msa0686890:three_prime_UTR | 35.0% | |
| ACCATATACATACACACACA+TGG | - | chr4_4:51517890-51517909 | None:intergenic | 35.0% | |
| TGTTTCTCCTTGTCCTTAAA+AGG | + | chr4_4:51517937-51517956 | Msa0686890:three_prime_UTR | 35.0% | |
| ! | ACGGAAAGTCCTTTTCTTTC+TGG | + | chr4_4:51512437-51512456 | Msa0686890:intron | 40.0% |
| ! | CGGAAAGTCCTTTTCTTTCT+GGG | + | chr4_4:51512438-51512457 | Msa0686890:intron | 40.0% |
| ! | CCTTTTCTTTCTGGGTTTCT+CGG | + | chr4_4:51512446-51512465 | Msa0686890:intron | 40.0% |
| !! | TTTTAAGGGCACGAGAATCA+TGG | + | chr4_4:51512524-51512543 | Msa0686890:intron | 40.0% |
| GATGATGATTCCAAAACTCC+AGG | + | chr4_4:51512656-51512675 | Msa0686890:CDS | 40.0% | |
| ! | ATAACAAGGACCTGGAGTTT+TGG | - | chr4_4:51512669-51512688 | None:intergenic | 40.0% |
| ! | TGTATAGGTTTGCTTGGTTC+TGG | + | chr4_4:51512830-51512849 | Msa0686890:intron | 40.0% |
| TGGATACGTGTTTGCTTAGT+AGG | - | chr4_4:51513095-51513114 | None:intergenic | 40.0% | |
| CAGCAACAAGTATTCTACTG+TGG | - | chr4_4:51513156-51513175 | None:intergenic | 40.0% | |
| ! | CACAGTAGAATACTTGTTGC+TGG | + | chr4_4:51513154-51513173 | Msa0686890:intron | 40.0% |
| ! | ATGAGAACTGATGACTGGTT+GGG | + | chr4_4:51513435-51513454 | Msa0686890:intron | 40.0% |
| TTTGTCCTTGTCTTCTATGG+CGG | + | chr4_4:51513618-51513637 | Msa0686890:intron | 40.0% | |
| !!! | GGACGGAGTTTTGGAATTTT+CGG | - | chr4_4:51513664-51513683 | None:intergenic | 40.0% |
| GGATTTCGAGGTTTCCAATA+TGG | - | chr4_4:51513747-51513766 | None:intergenic | 40.0% | |
| ! | CCTATTGGTATTGGATTTCG+AGG | - | chr4_4:51513759-51513778 | None:intergenic | 40.0% |
| CCTCGAAATCCAATACCAAT+AGG | + | chr4_4:51513756-51513775 | Msa0686890:intron | 40.0% | |
| TCCAATACCAATAGGTGTCA+TGG | + | chr4_4:51513764-51513783 | Msa0686890:intron | 40.0% | |
| ! | TGAAGTGCATCTCTCACTTT+TGG | + | chr4_4:51513850-51513869 | Msa0686890:intron | 40.0% |
| GAGTCCACTTATTTCAACAC+AGG | + | chr4_4:51514057-51514076 | Msa0686890:CDS | 40.0% | |
| GCATCCTGTGTTGAAATAAG+TGG | - | chr4_4:51514064-51514083 | None:intergenic | 40.0% | |
| GATGCTAAAGCCCTCAATTT+AGG | + | chr4_4:51514144-51514163 | Msa0686890:intron | 40.0% | |
| ! | TGTTGGTAGGCCTAAATTGA+GGG | - | chr4_4:51514157-51514176 | None:intergenic | 40.0% |
| ! | TTGTTGGTAGGCCTAAATTG+AGG | - | chr4_4:51514158-51514177 | None:intergenic | 40.0% |
| ATTAATAAAAGGCCTGGGAG+AGG | + | chr4_4:51514197-51514216 | Msa0686890:intron | 40.0% | |
| TTAATAAAAGGCCTGGGAGA+GGG | + | chr4_4:51514198-51514217 | Msa0686890:intron | 40.0% | |
| GCTCAATTACCCTTACTTCA+TGG | - | chr4_4:51514256-51514275 | None:intergenic | 40.0% | |
| CACGTTACGGATAACCAATT+TGG | + | chr4_4:51514296-51514315 | Msa0686890:intron | 40.0% | |
| TCCCAGGCATAAAACCAAAT+TGG | - | chr4_4:51514313-51514332 | None:intergenic | 40.0% | |
| !!! | AATTTGGTTTTATGCCTGGG+AGG | + | chr4_4:51514312-51514331 | Msa0686890:intron | 40.0% |
| GCTTTCCACAAAATCTCTCT+AGG | - | chr4_4:51514449-51514468 | None:intergenic | 40.0% | |
| AGCTATCCAGGATATGTATG+AGG | + | chr4_4:51514505-51514524 | Msa0686890:intron | 40.0% | |
| GCTATCCAGGATATGTATGA+GGG | + | chr4_4:51514506-51514525 | Msa0686890:intron | 40.0% | |
| TGGTGCAGTCCTATTGTTAT+GGG | - | chr4_4:51514578-51514597 | None:intergenic | 40.0% | |
| TTGGTGCAGTCCTATTGTTA+TGG | - | chr4_4:51514579-51514598 | None:intergenic | 40.0% | |
| ATAACAATAGGACTGCACCA+AGG | + | chr4_4:51514578-51514597 | Msa0686890:intron | 40.0% | |
| TAACAATAGGACTGCACCAA+GGG | + | chr4_4:51514579-51514598 | Msa0686890:intron | 40.0% | |
| TGGAATGTAACCTCAGCAAA+AGG | + | chr4_4:51514807-51514826 | Msa0686890:intron | 40.0% | |
| ! | TCTACTTTGGAGGTGAAAGT+TGG | + | chr4_4:51514839-51514858 | Msa0686890:intron | 40.0% |
| GGGTGCATAGTACAAAATGA+CGG | + | chr4_4:51514902-51514921 | Msa0686890:intron | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | + | chr4_4:51514941-51514960 | Msa0686890:intron | 40.0% | |
| GTCAGACCAACAATGTTGTA+TGG | + | chr4_4:51515049-51515068 | Msa0686890:intron | 40.0% | |
| TCCGTACCATACAACATTGT+TGG | - | chr4_4:51515058-51515077 | None:intergenic | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr4_4:51515149-51515168 | Msa0686890:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr4_4:51515275-51515294 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr4_4:51515313-51515332 | Msa0686890:intron | 40.0% | |
| GCCTCATATGCAGACAAAAA+AGG | + | chr4_4:51515498-51515517 | Msa0686890:intron | 40.0% | |
| CTTATCGACAAAGCAATTCG+AGG | - | chr4_4:51515604-51515623 | None:intergenic | 40.0% | |
| !! | GTCGAACTGTTGATTTCTTC+AGG | + | chr4_4:51516293-51516312 | Msa0686890:CDS | 40.0% |
| GATTTCTTCAGGGACATTGT+TGG | + | chr4_4:51516304-51516323 | Msa0686890:CDS | 40.0% | |
| TTGGCTTAGTTTATCTTCCC+TGG | + | chr4_4:51517000-51517019 | Msa0686890:intron | 40.0% | |
| AATATGCAACCTGATGCTGA+TGG | + | chr4_4:51517286-51517305 | Msa0686890:CDS | 40.0% | |
| ATATGCAACCTGATGCTGAT+GGG | + | chr4_4:51517287-51517306 | Msa0686890:CDS | 40.0% | |
| GATGGGAAATATCCATACAC+CGG | + | chr4_4:51517304-51517323 | Msa0686890:CDS | 40.0% | |
| GAAATTCTGGCACAATAGAC+AGG | - | chr4_4:51517394-51517413 | None:intergenic | 40.0% | |
| AGGAGCAGCAGTATTAATAG+TGG | - | chr4_4:51517482-51517501 | None:intergenic | 40.0% | |
| AACGGTAGAGTAGTTAGAGA+TGG | + | chr4_4:51517613-51517632 | Msa0686890:exon | 40.0% | |
| TTGCCATATAGCAGTCTGAA+GGG | + | chr4_4:51517636-51517655 | Msa0686890:three_prime_UTR | 40.0% | |
| ATGAGCATAGGCTGTTTGTT+TGG | + | chr4_4:51517823-51517842 | Msa0686890:three_prime_UTR | 40.0% | |
| ! | TTGTGTGTGACTTGTGAGAG+TGG | - | chr4_4:51512215-51512234 | None:intergenic | 45.0% |
| GAGGAACGGAGAGAAAGAAA+GGG | - | chr4_4:51512287-51512306 | None:intergenic | 45.0% | |
| TGAGGAACGGAGAGAAAGAA+AGG | - | chr4_4:51512288-51512307 | None:intergenic | 45.0% | |
| CTGGAGTGTGAGTTTGATCT+TGG | - | chr4_4:51512329-51512348 | None:intergenic | 45.0% | |
| CAAGATCAAACTCACACTCC+AGG | + | chr4_4:51512327-51512346 | Msa0686890:CDS | 45.0% | |
| CCGAGAAACCCAGAAAGAAA+AGG | - | chr4_4:51512449-51512468 | None:intergenic | 45.0% | |
| !! | ATAGGTTTGCTTGGTTCTGG+TGG | + | chr4_4:51512833-51512852 | Msa0686890:intron | 45.0% |
| CGGTCAACTTACATTGGACT+TGG | + | chr4_4:51513060-51513079 | Msa0686890:intron | 45.0% | |
| GTCTGTTGAAATGTGGTTGG+TGG | + | chr4_4:51513339-51513358 | Msa0686890:intron | 45.0% | |
| GTGAGATGAGAACTGATGAC+TGG | + | chr4_4:51513430-51513449 | Msa0686890:intron | 45.0% | |
| GATGAGAACTGATGACTGGT+TGG | + | chr4_4:51513434-51513453 | Msa0686890:intron | 45.0% | |
| ! | TGAGAACTGATGACTGGTTG+GGG | + | chr4_4:51513436-51513455 | Msa0686890:intron | 45.0% |
| ACTTTCAGGCGTGCAACTAT+GGG | - | chr4_4:51513589-51513608 | None:intergenic | 45.0% | |
| AGGGTATGGCTGAATATGGT+GGG | + | chr4_4:51513705-51513724 | Msa0686890:intron | 45.0% | |
| !! | TGGCTGAATATGGTGGGTTT+CGG | + | chr4_4:51513711-51513730 | Msa0686890:intron | 45.0% |
| GTTTCCAATATGGTGAGTGG+CGG | - | chr4_4:51513737-51513756 | None:intergenic | 45.0% | |
| GAGGTTTCCAATATGGTGAG+TGG | - | chr4_4:51513740-51513759 | None:intergenic | 45.0% | |
| GCCATGACACCTATTGGTAT+TGG | - | chr4_4:51513768-51513787 | None:intergenic | 45.0% | |
| AGTGAGAGATGCACTTCAGA+GGG | - | chr4_4:51513848-51513867 | None:intergenic | 45.0% | |
| AAGTGAGAGATGCACTTCAG+AGG | - | chr4_4:51513849-51513868 | None:intergenic | 45.0% | |
| GCAAAGCAAGGATGTGAGAT+TGG | - | chr4_4:51514101-51514120 | None:intergenic | 45.0% | |
| TCACATCCTTGCTTTGCTTC+AGG | + | chr4_4:51514104-51514123 | Msa0686890:intron | 45.0% | |
| CACATCCTTGCTTTGCTTCA+GGG | + | chr4_4:51514105-51514124 | Msa0686890:intron | 45.0% | |
| ! | GGCTTTAGCATCCTTACTCT+TGG | - | chr4_4:51514136-51514155 | None:intergenic | 45.0% |
| TCCTATAATTACCCTCTCCC+AGG | - | chr4_4:51514212-51514231 | None:intergenic | 45.0% | |
| CTACTTACTTCGACGCTTGA+TGG | + | chr4_4:51514352-51514371 | Msa0686890:intron | 45.0% | |
| GACGCTTGATGGAGCAATAT+CGG | + | chr4_4:51514363-51514382 | Msa0686890:intron | 45.0% | |
| CTTGATGGAGCAATATCGGA+CGG | + | chr4_4:51514367-51514386 | Msa0686890:intron | 45.0% | |
| ! | AGAGATTTTGTGGAAAGCCC+TGG | + | chr4_4:51514451-51514470 | Msa0686890:intron | 45.0% |
| AAGCTCCCTCATACATATCC+TGG | - | chr4_4:51514514-51514533 | None:intergenic | 45.0% | |
| AAGGACTTAAGGTTGACCCT+TGG | - | chr4_4:51514598-51514617 | None:intergenic | 45.0% | |
| ! | GCAGATGATGTAGTCTTGCT+TGG | + | chr4_4:51514689-51514708 | Msa0686890:intron | 45.0% |
| AGTCGAGGGAGGAGTTAAAT+GGG | + | chr4_4:51514714-51514733 | Msa0686890:intron | 45.0% | |
| TAGAAGCAAGACGGAGTATG+TGG | + | chr4_4:51514787-51514806 | Msa0686890:intron | 45.0% | |
| AACCTCAGCAAAAGGAGAAG+TGG | + | chr4_4:51514815-51514834 | Msa0686890:intron | 45.0% | |
| ACCTCAGCAAAAGGAGAAGT+GGG | + | chr4_4:51514816-51514835 | Msa0686890:intron | 45.0% | |
| AAGGAGAAGTGGGTCTACTT+TGG | + | chr4_4:51514826-51514845 | Msa0686890:intron | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr4_4:51514945-51514964 | Msa0686890:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr4_4:51514954-51514973 | Msa0686890:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr4_4:51514968-51514987 | Msa0686890:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr4_4:51514987-51515006 | None:intergenic | 45.0% | |
| CGGATATGAGAATGTTGCGA+TGG | + | chr4_4:51515122-51515141 | Msa0686890:intron | 45.0% | |
| AGAATGTTGCGATGGATGTG+TGG | + | chr4_4:51515130-51515149 | Msa0686890:intron | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | + | chr4_4:51515180-51515199 | Msa0686890:intron | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | + | chr4_4:51515181-51515200 | Msa0686890:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | + | chr4_4:51515182-51515201 | Msa0686890:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr4_4:51515274-51515293 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr4_4:51515297-51515316 | Msa0686890:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr4_4:51515307-51515326 | Msa0686890:intron | 45.0% | |
| CTATGGCGTCATTTGATCCA+TGG | + | chr4_4:51515421-51515440 | Msa0686890:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4_4:51515453-51515472 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4_4:51515454-51515473 | None:intergenic | 45.0% |
| TGATGAAAGCAAAGCAAGGC+TGG | - | chr4_4:51515577-51515596 | None:intergenic | 45.0% | |
| CATTAAGCGGAGAGCCTATT+AGG | - | chr4_4:51516633-51516652 | None:intergenic | 45.0% | |
| ! | TGAGTTGAACTATCCATGCC+AGG | + | chr4_4:51516917-51516936 | Msa0686890:intron | 45.0% |
| ! | ACTTCGGTTTGAACTAGTCC+TGG | - | chr4_4:51516938-51516957 | None:intergenic | 45.0% |
| GGATATTTCCCATCAGCATC+AGG | - | chr4_4:51517298-51517317 | None:intergenic | 45.0% | |
| CACGACACGAAGAGAAATTC+TGG | - | chr4_4:51517407-51517426 | None:intergenic | 45.0% | |
| CAGAATTTCTCTTCGTGTCG+TGG | + | chr4_4:51517405-51517424 | Msa0686890:intron | 45.0% | |
| GTTGCCATATAGCAGTCTGA+AGG | + | chr4_4:51517635-51517654 | Msa0686890:three_prime_UTR | 45.0% | |
| CATCCCTTCAGACTGCTATA+TGG | - | chr4_4:51517642-51517661 | None:intergenic | 45.0% | |
| CATATAGCAGTCTGAAGGGA+TGG | + | chr4_4:51517640-51517659 | Msa0686890:three_prime_UTR | 45.0% | |
| TAGGCTGTTTGTTTGGCACT+TGG | + | chr4_4:51517830-51517849 | Msa0686890:three_prime_UTR | 45.0% | |
| AGGCTGTTTGTTTGGCACTT+GGG | + | chr4_4:51517831-51517850 | Msa0686890:three_prime_UTR | 45.0% | |
| !!! | TAACATTTTTTTTTTTTTTA+AGG | + | chr4_4:51512509-51512528 | Msa0686890:intron | 5.0% |
| !!! | AACATTTTTTTTTTTTTTAA+GGG | + | chr4_4:51512510-51512529 | Msa0686890:intron | 5.0% |
| !! | ATAATAATAATAATAATAGT+AGG | - | chr4_4:51517502-51517521 | None:intergenic | 5.0% |
| ! | GTGACTTGTGAGAGTGGTTG+TGG | - | chr4_4:51512209-51512228 | None:intergenic | 50.0% |
| ACTCACGTGTGCGACAAATG+TGG | + | chr4_4:51512548-51512567 | Msa0686890:CDS | 50.0% | |
| !! | ATTGCTGATTCTCCGGACAG+TGG | + | chr4_4:51512899-51512918 | Msa0686890:CDS | 50.0% |
| CCTTGACTTAGTCCACTGTC+CGG | - | chr4_4:51512914-51512933 | None:intergenic | 50.0% | |
| CATTAAAAATGGGAGGCGGG+AGG | - | chr4_4:51513380-51513399 | None:intergenic | 50.0% | |
| ! | ATGACTGGTTGGGGTTGTGA+AGG | + | chr4_4:51513445-51513464 | Msa0686890:intron | 50.0% |
| CACTTTCAGGCGTGCAACTA+TGG | - | chr4_4:51513590-51513609 | None:intergenic | 50.0% | |
| CATAGTTGCACGCCTGAAAG+TGG | + | chr4_4:51513588-51513607 | Msa0686890:intron | 50.0% | |
| ! | TCCTTGTCTTCTATGGCGGA+TGG | + | chr4_4:51513622-51513641 | Msa0686890:intron | 50.0% |
| !! | TTGTCTTCTATGGCGGATGG+CGG | + | chr4_4:51513625-51513644 | Msa0686890:intron | 50.0% |
| ! | CATTAAGGCGGACGGAGTTT+TGG | - | chr4_4:51513673-51513692 | None:intergenic | 50.0% |
| ! | CTTAATGCGCTGATGTGGCA+GGG | + | chr4_4:51513686-51513705 | Msa0686890:intron | 50.0% |
| TGGCAGGGTATGGCTGAATA+TGG | + | chr4_4:51513701-51513720 | Msa0686890:intron | 50.0% | |
| CAGGGTATGGCTGAATATGG+TGG | + | chr4_4:51513704-51513723 | Msa0686890:intron | 50.0% | |
| TCCTTGCTTTGCTTCAGGGA+CGG | + | chr4_4:51514109-51514128 | Msa0686890:intron | 50.0% | |
| GCCTGGGAGAGGGTAATTAT+AGG | + | chr4_4:51514208-51514227 | Msa0686890:intron | 50.0% | |
| TGGAAAGCCCTGGAGAAGAA+AGG | + | chr4_4:51514461-51514480 | Msa0686890:intron | 50.0% | |
| GGAAAGCCCTGGAGAAGAAA+GGG | + | chr4_4:51514462-51514481 | Msa0686890:intron | 50.0% | |
| GAAAGCCCTGGAGAAGAAAG+GGG | + | chr4_4:51514463-51514482 | Msa0686890:intron | 50.0% | |
| ACTAGTGTGAGGACGCAAGA+TGG | + | chr4_4:51514536-51514555 | Msa0686890:intron | 50.0% | |
| CTAGTGTGAGGACGCAAGAT+GGG | + | chr4_4:51514537-51514556 | Msa0686890:intron | 50.0% | |
| TAGTGTGAGGACGCAAGATG+GGG | + | chr4_4:51514538-51514557 | Msa0686890:intron | 50.0% | |
| GACGGAACACATCCAAGAGT+TGG | + | chr4_4:51514646-51514665 | Msa0686890:intron | 50.0% | |
| !! | TACATCTCGGTGCCAACTCT+TGG | - | chr4_4:51514661-51514680 | None:intergenic | 50.0% |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | + | chr4_4:51514699-51514718 | Msa0686890:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | + | chr4_4:51514700-51514719 | Msa0686890:intron | 50.0% |
| GAGTCGAGGGAGGAGTTAAA+TGG | + | chr4_4:51514713-51514732 | Msa0686890:intron | 50.0% | |
| TAAATGGGAGGCTAGAGACC+TGG | + | chr4_4:51514729-51514748 | Msa0686890:intron | 50.0% | |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | + | chr4_4:51514752-51514771 | Msa0686890:intron | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr4_4:51514784-51514803 | None:intergenic | 50.0% | |
| ! | ACCCACTTCTCCTTTTGCTG+AGG | - | chr4_4:51514820-51514839 | None:intergenic | 50.0% |
| GAGAAGTGGGTCTACTTTGG+AGG | + | chr4_4:51514829-51514848 | Msa0686890:intron | 50.0% | |
| TGTTGTATGGTACGGAGCGT+TGG | + | chr4_4:51515062-51515081 | Msa0686890:intron | 50.0% | |
| ! | GTTGTATGGTACGGAGCGTT+GGG | + | chr4_4:51515063-51515082 | Msa0686890:intron | 50.0% |
| CACCATTAGAGAGAGAGTGG+GGG | + | chr4_4:51515183-51515202 | Msa0686890:intron | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | - | chr4_4:51515188-51515207 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_4:51515449-51515468 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4_4:51515455-51515474 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4_4:51515452-51515471 | Msa0686890:intron | 50.0% | |
| ! | TTGGAAGGGGTCCGTCTTTT+TGG | + | chr4_4:51516218-51516237 | Msa0686890:intron | 50.0% |
| GCAGCAGCATGCCAAAAAGA+CGG | - | chr4_4:51516232-51516251 | None:intergenic | 50.0% | |
| GCTGCTCTTACTCTCGTAAG+AGG | + | chr4_4:51516247-51516266 | Msa0686890:CDS | 50.0% | |
| CTTCAGGGACATTGTTGGTC+TGG | + | chr4_4:51516309-51516328 | Msa0686890:intron | 50.0% | |
| ! | GGCATTGAGTTCTGTCCCTT+TGG | + | chr4_4:51516392-51516411 | Msa0686890:intron | 50.0% |
| GGTTTGAACTAGTCCTGGCA+TGG | - | chr4_4:51516933-51516952 | None:intergenic | 50.0% | |
| AGTTTATCTTCCCTGGCTGC+CGG | + | chr4_4:51517007-51517026 | Msa0686890:intron | 50.0% | |
| AAGATTGGGACATCGAGCTC+CGG | - | chr4_4:51517029-51517048 | None:intergenic | 50.0% | |
| CAGTCAAGAAAGCCGGTGTA+TGG | - | chr4_4:51517319-51517338 | None:intergenic | 50.0% | |
| GACAGCACAGTCAAGAAAGC+CGG | - | chr4_4:51517326-51517345 | None:intergenic | 50.0% | |
| GGCACAATAGACAGGGAATC+CGG | - | chr4_4:51517386-51517405 | None:intergenic | 50.0% | |
| ! | GTGGTTGTGGAGAGTGTGAG+TGG | - | chr4_4:51512196-51512215 | None:intergenic | 55.0% |
| !! | CCGGACAGTGGACTAAGTCA+AGG | + | chr4_4:51512911-51512930 | Msa0686890:CDS | 55.0% |
| GCCATCCGCCATAGAAGACA+AGG | - | chr4_4:51513626-51513645 | None:intergenic | 55.0% | |
| CATCAGCGCATTAAGGCGGA+CGG | - | chr4_4:51513681-51513700 | None:intergenic | 55.0% | |
| ! | TCCGCCTTAATGCGCTGATG+TGG | + | chr4_4:51513681-51513700 | Msa0686890:intron | 55.0% |
| GCCACATCAGCGCATTAAGG+CGG | - | chr4_4:51513685-51513704 | None:intergenic | 55.0% | |
| CCTGCCACATCAGCGCATTA+AGG | - | chr4_4:51513688-51513707 | None:intergenic | 55.0% | |
| ! | CCTTAATGCGCTGATGTGGC+AGG | + | chr4_4:51513685-51513704 | Msa0686890:intron | 55.0% |
| ACCGTCCCTGAAGCAAAGCA+AGG | - | chr4_4:51514113-51514132 | None:intergenic | 55.0% | |
| TCAGGGACGGTCCAAGAGTA+AGG | + | chr4_4:51514122-51514141 | Msa0686890:intron | 55.0% | |
| TATGCCTGGGAGGTCGACTA+TGG | + | chr4_4:51514322-51514341 | Msa0686890:intron | 55.0% | |
| CCTCACCCCTTTCTTCTCCA+GGG | - | chr4_4:51514471-51514490 | None:intergenic | 55.0% | |
| CCTGGAGAAGAAAGGGGTGA+GGG | + | chr4_4:51514469-51514488 | Msa0686890:intron | 55.0% | |
| AGGGAGCTTCGACTAGTGTG+AGG | + | chr4_4:51514525-51514544 | Msa0686890:intron | 55.0% | |
| CGAGGGAGGAGTTAAATGGG+AGG | + | chr4_4:51514717-51514736 | Msa0686890:intron | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | - | chr4_4:51514762-51514781 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr4_4:51514781-51514800 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr4_4:51514778-51514797 | Msa0686890:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4_4:51515447-51515466 | Msa0686890:intron | 55.0% | |
| GGGCTGTATGCATCTGTCAC+TGG | + | chr4_4:51515893-51515912 | Msa0686890:CDS | 55.0% | |
| GCATCTGTCACTGGTCGACT+TGG | + | chr4_4:51515902-51515921 | Msa0686890:CDS | 55.0% | |
| GCCTCAACGAGCTTCGCAAA+CGG | + | chr4_4:51517595-51517614 | Msa0686890:CDS | 55.0% | |
| ACCGTTTGCGAAGCTCGTTG+AGG | - | chr4_4:51517599-51517618 | None:intergenic | 55.0% | |
| ! | TGCGCTGATGTGGCAGGGTA+TGG | + | chr4_4:51513691-51513710 | Msa0686890:intron | 60.0% |
| TCGGCCGCCACTCACCATAT+TGG | + | chr4_4:51513730-51513749 | Msa0686890:intron | 60.0% | |
| AGCGGCGCCATGACACCTAT+TGG | - | chr4_4:51513774-51513793 | None:intergenic | 60.0% | |
| GCTTCCATAGTCGACCTCCC+AGG | - | chr4_4:51514329-51514348 | None:intergenic | 60.0% | |
| CCCTGGAGAAGAAAGGGGTG+AGG | + | chr4_4:51514468-51514487 | Msa0686890:intron | 60.0% | |
| CCCTCACCCCTTTCTTCTCC+AGG | - | chr4_4:51514472-51514491 | None:intergenic | 60.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | + | chr4_4:51514703-51514722 | Msa0686890:intron | 60.0% |
| ATGGGAGGCTAGAGACCTGG+AGG | + | chr4_4:51514732-51514751 | Msa0686890:intron | 60.0% | |
| !! | CGCTTCTAAGGCTTGCCTCC+AGG | - | chr4_4:51514750-51514769 | None:intergenic | 60.0% |
| !! | GTATGGTACGGAGCGTTGGG+CGG | + | chr4_4:51515066-51515085 | Msa0686890:intron | 60.0% |
| ! | ACTAAGTGGGGTCGGCTCCA+TGG | - | chr4_4:51515441-51515460 | None:intergenic | 60.0% |
| ATGGAGCCGACCCCACTTAG+TGG | + | chr4_4:51515440-51515459 | Msa0686890:intron | 60.0% | |
| TGGAGCCGACCCCACTTAGT+GGG | + | chr4_4:51515441-51515460 | Msa0686890:intron | 60.0% | |
| !! | CTATGGCGGATGGCGGTCTG+TGG | + | chr4_4:51513632-51513651 | Msa0686890:intron | 65.0% |
| ACATCGAGCTCCGGCAGCCA+GGG | - | chr4_4:51517020-51517039 | None:intergenic | 65.0% | |
| GACATCGAGCTCCGGCAGCC+AGG | - | chr4_4:51517021-51517040 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51512190 | 51518012 | 51512190 | ID=Msa0686890;Name=Msa0686890 |
| chr4_4 | mRNA | 51512190 | 51518012 | 51512190 | ID=Msa0686890-mRNA-1;Parent=Msa0686890;Name=Msa0686890-mRNA-1;_AED=0.34;_eAED=0.34;_QI=128|0.57|0.62|1|0.57|0.62|8|392|245 |
| chr4_4 | exon | 51512190 | 51512348 | 51512190 | ID=Msa0686890-mRNA-1:exon:13377;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51512531 | 51512677 | 51512531 | ID=Msa0686890-mRNA-1:exon:13378;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51512837 | 51512974 | 51512837 | ID=Msa0686890-mRNA-1:exon:13379;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51514047 | 51514084 | 51514047 | ID=Msa0686890-mRNA-1:exon:13380;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51515872 | 51515933 | 51515872 | ID=Msa0686890-mRNA-1:exon:13381;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51516225 | 51516325 | 51516225 | ID=Msa0686890-mRNA-1:exon:13382;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51517212 | 51517393 | 51517212 | ID=Msa0686890-mRNA-1:exon:13383;Parent=Msa0686890-mRNA-1 |
| chr4_4 | exon | 51517582 | 51518012 | 51517582 | ID=Msa0686890-mRNA-1:exon:13384;Parent=Msa0686890-mRNA-1 |
| chr4_4 | five_prime_UTR | 51512190 | 51512317 | 51512190 | ID=Msa0686890-mRNA-1:five_prime_utr;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51512318 | 51512348 | 51512318 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51512531 | 51512677 | 51512531 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51512837 | 51512974 | 51512837 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51514047 | 51514084 | 51514047 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51515872 | 51515933 | 51515872 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51516225 | 51516325 | 51516225 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51517212 | 51517393 | 51517212 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | CDS | 51517582 | 51517620 | 51517582 | ID=Msa0686890-mRNA-1:cds;Parent=Msa0686890-mRNA-1 |
| chr4_4 | three_prime_UTR | 51517621 | 51518012 | 51517621 | ID=Msa0686890-mRNA-1:three_prime_utr;Parent=Msa0686890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
