Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606770 | XP_013456507.1 | 97.203 | 286 | 6 | 2 | 1 | 286 | 1 | 284 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606730 | Msa0606770 | 0.966170 | 1.453441e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606770 | MtrunA17_Chr1g0163301 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 9.69e-125 | 359 |
| Msa0606770 | MtrunA17_Chr4g0037581 | 98.214 | 168 | 1 | 2 | 1 | 168 | 1 | 166 | 3.67e-118 | 336 |
| Msa0606770 | MtrunA17_Chr2g0329631 | 44.105 | 229 | 110 | 4 | 72 | 283 | 6 | 233 | 3.27e-58 | 186 |
| Msa0606770 | MtrunA17_Chr4g0037591 | 90.217 | 92 | 9 | 0 | 167 | 258 | 4 | 95 | 2.92e-57 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606770 | AT1G60670.5 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 7.57e-74 | 227 |
| Msa0606770 | AT1G60670.2 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 9.41e-74 | 226 |
| Msa0606770 | AT1G60670.3 | 44.922 | 256 | 109 | 6 | 37 | 286 | 1 | 230 | 1.54e-70 | 218 |
| Msa0606770 | AT1G10820.2 | 45.850 | 253 | 120 | 6 | 37 | 286 | 1 | 239 | 6.67e-66 | 207 |
| Msa0606770 | AT1G10820.1 | 48.444 | 225 | 98 | 4 | 64 | 286 | 5 | 213 | 7.89e-65 | 203 |
| Msa0606770 | AT3G07565.3 | 42.922 | 219 | 118 | 2 | 68 | 283 | 37 | 251 | 7.50e-60 | 191 |
| Msa0606770 | AT3G07565.1 | 43.379 | 219 | 116 | 3 | 68 | 283 | 37 | 250 | 3.45e-59 | 189 |
| Msa0606770 | AT1G60670.4 | 42.358 | 229 | 105 | 6 | 37 | 259 | 1 | 208 | 5.21e-57 | 182 |
| Msa0606770 | AT3G07565.4 | 41.228 | 228 | 118 | 3 | 68 | 283 | 37 | 260 | 7.50e-57 | 184 |
| Msa0606770 | AT1G68160.1 | 42.446 | 278 | 137 | 3 | 1 | 278 | 3 | 257 | 9.20e-50 | 166 |
| Msa0606770 | AT1G60670.1 | 42.157 | 204 | 91 | 6 | 37 | 234 | 1 | 183 | 2.14e-48 | 160 |
| Msa0606770 | AT3G07565.2 | 40.945 | 127 | 67 | 3 | 68 | 191 | 37 | 158 | 4.07e-25 | 99.4 |
| Msa0606770 | AT2G43470.1 | 32.984 | 191 | 101 | 8 | 95 | 277 | 24 | 195 | 1.44e-15 | 74.3 |
Find 114 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTCTCTGCTTCCTTAT+TGG | 0.081617 | 4_2:-53400281 | Msa0606770:five_prime_UTR |
| GTCCCAATGGGTAATTATTT+TGG | 0.089118 | 4_2:-53399427 | Msa0606770:CDS |
| CTTCTTGTTGATTCAGTTCC+AGG | 0.161351 | 4_2:-53399292 | Msa0606770:CDS |
| TTTGGGTTTAGTAGTTCTTC+TGG | 0.191137 | 4_2:-53399409 | Msa0606770:CDS |
| GCTATTACTGCACTACAATT+TGG | 0.220821 | 4_2:+53400144 | None:intergenic |
| GGAAGCAGAGAAAGGGAAAA+AGG | 0.233659 | 4_2:+53400288 | None:intergenic |
| TCTTGCAAGATCCTCGTTAA+TGG | 0.242729 | 4_2:+53395666 | None:intergenic |
| GGGGTTCTGCTAATTTCATC+TGG | 0.255132 | 4_2:-53399775 | Msa0606770:five_prime_UTR |
| CACCTTGTACGTCGATAAAT+TGG | 0.260162 | 4_2:+53396450 | None:intergenic |
| TATAAATAAATCAATCTTAT+AGG | 0.268216 | 4_2:-53394782 | Msa0606770:three_prime_UTR |
| CTGCTCCATGAGTTGCTTCA+TGG | 0.279827 | 4_2:+53396501 | None:intergenic |
| AGTCTTGGCTGCAACTGTTT+TGG | 0.286955 | 4_2:-53394951 | Msa0606770:three_prime_UTR |
| CTTCATGATACTTGGTTCAT+TGG | 0.301764 | 4_2:+53398179 | None:intergenic |
| TATAGGTAATCAAGCGAATT+TGG | 0.307134 | 4_2:+53399745 | None:intergenic |
| TAAAATTAAGAAATATAAAA+AGG | 0.310085 | 4_2:+53400335 | None:intergenic |
| AAAGTTGCAAATAAGTAAAA+AGG | 0.338088 | 4_2:-53400057 | Msa0606770:intron |
| CAACAGGCAGTGGCGGCATT+TGG | 0.339764 | 4_2:+53395689 | None:intergenic |
| TTTCCCAAACTGTGTTCATC+TGG | 0.342616 | 4_2:+53397356 | None:intergenic |
| CATTCATCATTTGGAAGTCT+TGG | 0.352947 | 4_2:-53394966 | Msa0606770:three_prime_UTR |
| TTCTCACATGTCACGCGTTA+TGG | 0.353724 | 4_2:-53396780 | Msa0606770:CDS |
| GAACTTACCTAAGTTCTATT+AGG | 0.367237 | 4_2:+53395634 | None:intergenic |
| GGATGGCATCATTCATCATT+TGG | 0.367589 | 4_2:-53394975 | Msa0606770:three_prime_UTR |
| GAAACCAGATGAACACAGTT+TGG | 0.374047 | 4_2:-53397360 | Msa0606770:CDS |
| TGCTCCATGAGTTGCTTCAT+GGG | 0.376053 | 4_2:+53396502 | None:intergenic |
| TCTTCTGGGATGGTATATTC+TGG | 0.384527 | 4_2:-53399394 | Msa0606770:CDS |
| TTGGGTTTAGTAGTTCTTCT+GGG | 0.387168 | 4_2:-53399408 | Msa0606770:CDS |
| GTGAGTGAGTGAGATAATAA+TGG | 0.396453 | 4_2:+53400363 | None:intergenic |
| GACTCTATTCAAGCAACTAT+AGG | 0.397589 | 4_2:+53399728 | None:intergenic |
| GATTGATTTATTTATACAAC+AGG | 0.400688 | 4_2:+53394789 | None:intergenic |
| AAAAGATGGATTAGAATCTC+TGG | 0.404803 | 4_2:+53394871 | None:intergenic |
| CTGTTCGCGATGTTGCTTTG+AGG | 0.408201 | 4_2:-53398122 | Msa0606770:CDS |
| GGATAAAATAACATATCTAA+TGG | 0.422717 | 4_2:-53394554 | Msa0606770:three_prime_UTR |
| GGGTTACAACTCTACCAATA+AGG | 0.427932 | 4_2:+53400267 | None:intergenic |
| ATAGATAACAGAATATTGAT+TGG | 0.430898 | 4_2:-53394717 | Msa0606770:three_prime_UTR |
| CAAAATCAAAATCAACCCTT+TGG | 0.432558 | 4_2:+53399706 | None:intergenic |
| TTCTTGTTGATTCAGTTCCA+GGG | 0.434162 | 4_2:-53399291 | Msa0606770:CDS |
| TTGATGTACTTCATGATACT+TGG | 0.436387 | 4_2:+53398171 | None:intergenic |
| TACCATGTCATAGGAATAGT+TGG | 0.442576 | 4_2:-53394686 | Msa0606770:three_prime_UTR |
| AGCACAGTCAAATTTGCATT+CGG | 0.444424 | 4_2:-53396828 | Msa0606770:CDS |
| AGATCCTCGTTAATGGCAAC+AGG | 0.447502 | 4_2:+53395673 | None:intergenic |
| ACCCAAAATAATTACCCATT+GGG | 0.452792 | 4_2:+53399425 | None:intergenic |
| GAGAATATGACCCCATGCTT+GGG | 0.454600 | 4_2:+53396798 | None:intergenic |
| ACCAATAAGGAAGCAGAGAA+AGG | 0.454901 | 4_2:+53400280 | None:intergenic |
| AAATTGTTGATAGAAATAAT+AGG | 0.461796 | 4_2:-53399576 | Msa0606770:five_prime_UTR |
| AAACCAGATGAACACAGTTT+GGG | 0.464720 | 4_2:-53397359 | Msa0606770:CDS |
| TAGGAAAAGGTGATAAAAGA+TGG | 0.469639 | 4_2:-53399557 | Msa0606770:exon |
| TTGATAGAAATAATAGGAAA+AGG | 0.475975 | 4_2:-53399570 | Msa0606770:five_prime_UTR |
| AACCCAAAATAATTACCCAT+TGG | 0.481651 | 4_2:+53399424 | None:intergenic |
| GTTTAGTAGTTCTTCTGGGA+TGG | 0.481723 | 4_2:-53399404 | Msa0606770:CDS |
| GCGATGTTGCTTTGAGGTGT+AGG | 0.484163 | 4_2:-53398116 | Msa0606770:CDS |
| GTGTATGTTCAGGAATTTGT+GGG | 0.484238 | 4_2:-53396525 | Msa0606770:intron |
| GTTGTAAGTCAAGGTGGTGC+TGG | 0.490288 | 4_2:-53399340 | Msa0606770:CDS |
| TCGTTAATGGCAACAGGCAG+TGG | 0.497673 | 4_2:+53395679 | None:intergenic |
| ATCCACATACTCGTTTAGAA+TGG | 0.498102 | 4_2:+53395813 | None:intergenic |
| CTACATGCAATTGAGGAGTC+AGG | 0.499010 | 4_2:-53394926 | Msa0606770:three_prime_UTR |
| GGCATTTGGCTCATAATGCC+AGG | 0.504404 | 4_2:+53395703 | None:intergenic |
| CAAAAGAGAGAGACAAGAGA+TGG | 0.506304 | 4_2:+53400246 | None:intergenic |
| GAAAGCGATTAATATATCAA+TGG | 0.508216 | 4_2:-53394760 | Msa0606770:three_prime_UTR |
| TCTTAAAAGTTACTGTTCCA+TGG | 0.513560 | 4_2:-53394846 | Msa0606770:three_prime_UTR |
| TGAGAATATGACCCCATGCT+TGG | 0.517631 | 4_2:+53396797 | None:intergenic |
| TAGTTTGCTGTAAGATGTGA+AGG | 0.520842 | 4_2:-53394648 | Msa0606770:three_prime_UTR |
| GGGTTCTGCTAATTTCATCT+GGG | 0.526645 | 4_2:-53399774 | Msa0606770:five_prime_UTR |
| TTGCTTGAATAGAGTCCAAA+GGG | 0.527216 | 4_2:-53399721 | Msa0606770:five_prime_UTR |
| TCTTGATGAACAGTACAGAT+TGG | 0.528915 | 4_2:-53399233 | Msa0606770:CDS |
| CCAATAAGGAAGCAGAGAAA+GGG | 0.532361 | 4_2:+53400281 | None:intergenic |
| ACACTCTCAGCTCAACAACT+TGG | 0.533363 | 4_2:-53400084 | Msa0606770:five_prime_UTR |
| TTTGGTGCTACATGCAATTG+AGG | 0.535688 | 4_2:-53394933 | Msa0606770:three_prime_UTR |
| GGTGCTGGTGGTAATTCAGC+TGG | 0.543025 | 4_2:-53399325 | Msa0606770:CDS |
| ATCAATCGTTGTAGAGGGGA+TGG | 0.545935 | 4_2:-53394992 | Msa0606770:three_prime_UTR |
| CCTGTGTCATGCTTAAGCCC+TGG | 0.552020 | 4_2:+53399274 | None:intergenic |
| ATGTCAGAGATGGTCCCAAT+GGG | 0.554489 | 4_2:-53399439 | Msa0606770:CDS |
| TGTGTATGTTCAGGAATTTG+TGG | 0.554772 | 4_2:-53396526 | Msa0606770:intron |
| GATGTACATCGATTTGTGAA+AGG | 0.557695 | 4_2:+53395012 | None:intergenic |
| TGAACAGTACAGATTGGAAG+AGG | 0.560367 | 4_2:-53399227 | Msa0606770:CDS |
| ACACAGGGTTGGCTGTTGAA+TGG | 0.567227 | 4_2:-53399258 | Msa0606770:CDS |
| TGGGCCCATGAAGCAACTCA+TGG | 0.567392 | 4_2:-53396506 | Msa0606770:CDS |
| CATGTCAGAGATGGTCCCAA+TGG | 0.570192 | 4_2:-53399440 | Msa0606770:CDS |
| CCAGGGCTTAAGCATGACAC+AGG | 0.572689 | 4_2:-53399274 | Msa0606770:CDS |
| AAAAGAGAGAGACAAGAGAT+GGG | 0.575868 | 4_2:+53400247 | None:intergenic |
| TGTACATCAATCGTTGTAGA+GGG | 0.578084 | 4_2:-53394997 | Msa0606770:three_prime_UTR |
| GCTTCTTCAGGATAAGTCGT+TGG | 0.579374 | 4_2:-53396858 | Msa0606770:intron |
| AACAACCATGTTGTAAGTCA+AGG | 0.581264 | 4_2:-53399349 | Msa0606770:CDS |
| TGTGCCTTGTGTGGCAAAAG+AGG | 0.582507 | 4_2:+53395845 | None:intergenic |
| GAATAATAGCATGTCAGAGA+TGG | 0.583965 | 4_2:-53399449 | Msa0606770:CDS |
| GAGATAATAATGGATGGTTG+TGG | 0.584541 | 4_2:+53400373 | None:intergenic |
| ATGTACATCAATCGTTGTAG+AGG | 0.586605 | 4_2:-53394998 | Msa0606770:three_prime_UTR |
| TACCAATTTATCGACGTACA+AGG | 0.592537 | 4_2:-53396452 | Msa0606770:intron |
| CACCACCTTGACTTACAACA+TGG | 0.596965 | 4_2:+53399344 | None:intergenic |
| CTCCAACTATTCCTATGACA+TGG | 0.600650 | 4_2:+53394684 | None:intergenic |
| GAAAAGGTGATAAAAGATGG+AGG | 0.605591 | 4_2:-53399554 | Msa0606770:exon |
| GTTGCTTGAATAGAGTCCAA+AGG | 0.606694 | 4_2:-53399722 | Msa0606770:five_prime_UTR |
| TCTCAGCTCAACAACTTGGT+CGG | 0.607644 | 4_2:-53400080 | Msa0606770:five_prime_UTR |
| AGTCAACGGACACTATATGA+TGG | 0.610616 | 4_2:-53396752 | Msa0606770:intron |
| GCTTAAGCATGACACAGGGT+TGG | 0.613167 | 4_2:-53399269 | Msa0606770:CDS |
| TGCAGCATGAGTGAGATGCC+TGG | 0.617604 | 4_2:-53395721 | Msa0606770:intron |
| TAATCAAGCGAATTTGGTCA+TGG | 0.620638 | 4_2:+53399751 | None:intergenic |
| AATTAATATTGTGCCTTGTG+TGG | 0.630893 | 4_2:+53395836 | None:intergenic |
| CAAATGAAAATAATCAACCA+TGG | 0.635235 | 4_2:+53394829 | None:intergenic |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.642936 | 4_2:-53398113 | Msa0606770:CDS |
| AGAATATGACCCCATGCTTG+GGG | 0.646474 | 4_2:+53396799 | None:intergenic |
| TTAATGGCAACAGGCAGTGG+CGG | 0.648108 | 4_2:+53395682 | None:intergenic |
| TGGAGGCAGAGTCAAACAGA+GGG | 0.653189 | 4_2:-53399537 | Msa0606770:CDS |
| GTGAGTGAGATAATAATGGA+TGG | 0.654208 | 4_2:+53400367 | None:intergenic |
| GTAAGTCAAGGTGGTGCTGG+TGG | 0.656921 | 4_2:-53399337 | Msa0606770:CDS |
| ATGGAGGCAGAGTCAAACAG+AGG | 0.667685 | 4_2:-53399538 | Msa0606770:CDS |
| GAATATGACCCCATGCTTGG+GGG | 0.678829 | 4_2:+53396800 | None:intergenic |
| GAACAGTACAGATTGGAAGA+GGG | 0.679393 | 4_2:-53399226 | Msa0606770:CDS |
| CAGGGCTTAAGCATGACACA+GGG | 0.681848 | 4_2:-53399273 | Msa0606770:CDS |
| AACCATGTTGTAAGTCAAGG+TGG | 0.691347 | 4_2:-53399346 | Msa0606770:CDS |
| GCGTTATGGAACAAAGTCAA+CGG | 0.697757 | 4_2:-53396766 | Msa0606770:CDS |
| GTACATCAATCGTTGTAGAG+GGG | 0.701562 | 4_2:-53394996 | Msa0606770:three_prime_UTR |
| ACTGCCTGTTGCCATTAACG+AGG | 0.709980 | 4_2:-53395677 | Msa0606770:CDS |
| AGTTTGCTGTAAGATGTGAA+GGG | 0.713532 | 4_2:-53394647 | Msa0606770:three_prime_UTR |
| CATGCAATATCATTTCAGCA+CGG | 0.730065 | 4_2:-53399478 | Msa0606770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTTAATTTTTTA+TGG | + | chr4_2:53397735-53397754 | None:intergenic | 0.0% |
| !! | TTATTTATTTATTGCTAATT+TGG | - | chr4_2:53395741-53395760 | Msa0606770:intron | 10.0% |
| !!! | ATAAATTTCCAATTTTAAAT+GGG | + | chr4_2:53397395-53397414 | None:intergenic | 10.0% |
| !! | ATTAAAAAAACTTAAGAAAA+TGG | + | chr4_2:53398190-53398209 | None:intergenic | 10.0% |
| !! | AATATGATCATTAATTTAAA+TGG | + | chr4_2:53398754-53398773 | None:intergenic | 10.0% |
| !! | TATAAATAAATCAATCTTAT+AGG | - | chr4_2:53400125-53400144 | Msa0606770:five_prime_UTR | 10.0% |
| !!! | AAATTGTTGATAGAAATAAT+AGG | - | chr4_2:53395331-53395350 | Msa0606770:intron | 15.0% |
| !!! | TAAGTTGAACAATAAATTTA+AGG | - | chr4_2:53395973-53395992 | Msa0606770:intron | 15.0% |
| !!! | TTATTTTCTTAGTTTATGTT+TGG | + | chr4_2:53396209-53396228 | None:intergenic | 15.0% |
| !! | ATAACAATCATGAAATTAAA+AGG | + | chr4_2:53396690-53396709 | None:intergenic | 15.0% |
| !! | CTTTAATATGTTATAAGTTA+TGG | - | chr4_2:53397126-53397145 | Msa0606770:intron | 15.0% |
| !!! | TAAATTTCCAATTTTAAATG+GGG | + | chr4_2:53397394-53397413 | None:intergenic | 15.0% |
| !!! | GATAAATTTCCAATTTTAAA+TGG | + | chr4_2:53397396-53397415 | None:intergenic | 15.0% |
| !!! | TTTAAAATTGGAAATTTATC+AGG | - | chr4_2:53397396-53397415 | Msa0606770:intron | 15.0% |
| !! | TTAAAATTGGAAATTTATCA+GGG | - | chr4_2:53397397-53397416 | Msa0606770:intron | 15.0% |
| !! | TAATTAATAGAAATAATGCT+TGG | - | chr4_2:53398803-53398822 | Msa0606770:intron | 15.0% |
| !! | TATAATGAAAGATGAAAATT+TGG | + | chr4_2:53398837-53398856 | None:intergenic | 15.0% |
| !! | AAAGTTGCAAATAAGTAAAA+AGG | - | chr4_2:53394850-53394869 | Msa0606770:three_prime_UTR | 20.0% |
| !!! | ATGAAAAGTTGATGTTTTTA+AGG | + | chr4_2:53395005-53395024 | None:intergenic | 20.0% |
| !!! | TGTTATATTTTGTTTGGAAA+TGG | - | chr4_2:53395280-53395299 | Msa0606770:intron | 20.0% |
| !! | TTGATAGAAATAATAGGAAA+AGG | - | chr4_2:53395337-53395356 | Msa0606770:intron | 20.0% |
| !! | ATAAAAACAAATGACTTACT+TGG | + | chr4_2:53395712-53395731 | None:intergenic | 20.0% |
| !! | AGACACACTTAAATTATTAT+CGG | + | chr4_2:53395817-53395836 | None:intergenic | 20.0% |
| !!! | AGATTCTATAAAATTGATTC+TGG | - | chr4_2:53395896-53395915 | Msa0606770:intron | 20.0% |
| !! | TTCAACTTACATTTATATGA+AGG | + | chr4_2:53395962-53395981 | None:intergenic | 20.0% |
| !!! | AGAACCTAAATTATTTTCAT+GGG | + | chr4_2:53396347-53396366 | None:intergenic | 20.0% |
| !!! | AAGAACCTAAATTATTTTCA+TGG | + | chr4_2:53396348-53396367 | None:intergenic | 20.0% |
| !! | CTTGTATTCAATAATTTGAT+TGG | - | chr4_2:53396536-53396555 | Msa0606770:intron | 20.0% |
| !!! | TTTAGAATTCAAATTTGTAC+TGG | + | chr4_2:53396986-53397005 | None:intergenic | 20.0% |
| !! | ATAATTGCAACATATTAAAG+TGG | + | chr4_2:53397019-53397038 | None:intergenic | 20.0% |
| !! | ATGAAACATAACCTTTAAAT+AGG | + | chr4_2:53397312-53397331 | None:intergenic | 20.0% |
| !!! | AAATTTCCAATTTTAAATGG+GGG | + | chr4_2:53397393-53397412 | None:intergenic | 20.0% |
| !!! | CAGAAAAGTATGTAAAATTT+TGG | - | chr4_2:53397586-53397605 | Msa0606770:intron | 20.0% |
| !! | TTGATTCAATATATCAAAAC+TGG | + | chr4_2:53397977-53397996 | None:intergenic | 20.0% |
| !! | TTGAATCAATTAATGTCTTT+AGG | - | chr4_2:53397988-53398007 | Msa0606770:intron | 20.0% |
| !! | TATTTAATGAAATGTGGAAT+TGG | + | chr4_2:53398359-53398378 | None:intergenic | 20.0% |
| !!! | AGTTTTGTTTTTGTAAATAC+TGG | - | chr4_2:53398504-53398523 | Msa0606770:intron | 20.0% |
| !! | ATTTGTAACAACTAATTTAG+TGG | - | chr4_2:53398574-53398593 | Msa0606770:intron | 20.0% |
| !! | TAATGAAGTTTACTTGTATT+TGG | - | chr4_2:53399120-53399139 | Msa0606770:intron | 20.0% |
| !! | GAATCTATTCTATTGTTAAT+TGG | + | chr4_2:53399408-53399427 | None:intergenic | 20.0% |
| !! | AATTAAATTGAAACATAGTG+TGG | + | chr4_2:53399437-53399456 | None:intergenic | 20.0% |
| !!! | ATTGATTTACCTAATTAGTT+TGG | - | chr4_2:53399454-53399473 | Msa0606770:CDS | 20.0% |
| !!! | TGCATATTCATTATACATTT+TGG | - | chr4_2:53399716-53399735 | Msa0606770:five_prime_UTR | 20.0% |
| !! | TATCATATACAAATGTTGAT+TGG | - | chr4_2:53399822-53399841 | Msa0606770:five_prime_UTR | 20.0% |
| !!! | TAACTTTTAAGATCAAAAGA+TGG | + | chr4_2:53400053-53400072 | None:intergenic | 20.0% |
| !!! | TTTTCATTTGAAACAAAACT+TGG | - | chr4_2:53400091-53400110 | Msa0606770:five_prime_UTR | 20.0% |
| !!! | GATTGATTTATTTATACAAC+AGG | + | chr4_2:53400121-53400140 | None:intergenic | 20.0% |
| !! | ATAGATAACAGAATATTGAT+TGG | - | chr4_2:53400190-53400209 | Msa0606770:five_prime_UTR | 20.0% |
| !!! | TAAATAGTAGTTCATTTTGT+AGG | - | chr4_2:53400332-53400351 | Msa0606770:five_prime_UTR | 20.0% |
| !! | GGATAAAATAACATATCTAA+TGG | - | chr4_2:53400353-53400372 | Msa0606770:five_prime_UTR | 20.0% |
| !!! | AACACTGATTTTTGTTTTTC+TGG | - | chr4_2:53395036-53395055 | Msa0606770:three_prime_UTR | 25.0% |
| !!! | ACACTGATTTTTGTTTTTCT+GGG | - | chr4_2:53395037-53395056 | Msa0606770:three_prime_UTR | 25.0% |
| !!! | TTCTTCTCTTTCTTTTTTCT+AGG | - | chr4_2:53395060-53395079 | Msa0606770:intron | 25.0% |
| !!! | TTCATTTTTGAGCTAATGTT+TGG | - | chr4_2:53395087-53395106 | Msa0606770:intron | 25.0% |
| !! | AGCTAATGTTTGGATTTTTA+AGG | - | chr4_2:53395097-53395116 | Msa0606770:intron | 25.0% |
| !! | GCTAATGTTTGGATTTTTAA+GGG | - | chr4_2:53395098-53395117 | Msa0606770:intron | 25.0% |
| !! | CGGTATTGTTATATTTTGTT+TGG | - | chr4_2:53395274-53395293 | Msa0606770:intron | 25.0% |
| !!! | TATATTTTGTTTGGAAATGG+TGG | - | chr4_2:53395283-53395302 | Msa0606770:intron | 25.0% |
| !! | AGGCTAAAATTCAATTTTAG+CGG | - | chr4_2:53395993-53396012 | Msa0606770:intron | 25.0% |
| ! | CTTTCCCATGAAAATAATTT+AGG | - | chr4_2:53396340-53396359 | Msa0606770:intron | 25.0% |
| !!! | ACTGCTAAATTTGTTTTTCA+TGG | - | chr4_2:53396605-53396624 | Msa0606770:intron | 25.0% |
| !!! | ATGCTTTAGAAACTATAAAG+TGG | + | chr4_2:53397075-53397094 | None:intergenic | 25.0% |
| ! | AATGAAGAAAATAAAGCTGA+TGG | - | chr4_2:53397222-53397241 | Msa0606770:intron | 25.0% |
| ! | CAACTTGTAATCCTATTTAA+AGG | - | chr4_2:53397298-53397317 | Msa0606770:intron | 25.0% |
| !! | AATTTTAAATGGGGGAAAAA+AGG | + | chr4_2:53397385-53397404 | None:intergenic | 25.0% |
| !!! | TTTTTTCCCCCATTTAAAAT+TGG | - | chr4_2:53397384-53397403 | Msa0606770:intron | 25.0% |
| ! | TTGTGGATAATATGTTATAC+TGG | + | chr4_2:53397424-53397443 | None:intergenic | 25.0% |
| ! | TTTCATAGATCTTAAAACTG+AGG | + | chr4_2:53397759-53397778 | None:intergenic | 25.0% |
| ! | CACAAGTATTTAATGAAATG+TGG | + | chr4_2:53398365-53398384 | None:intergenic | 25.0% |
| ! | TTAAATACTTGTGTATGTTC+AGG | - | chr4_2:53398372-53398391 | Msa0606770:intron | 25.0% |
| ! | AACAAAACTGAAACATATGA+TGG | + | chr4_2:53398493-53398512 | None:intergenic | 25.0% |
| ! | AATTTGAACATTTCCTAAAC+AGG | + | chr4_2:53398663-53398682 | None:intergenic | 25.0% |
| ! | GAAAGATATCATATTCACAT+TGG | - | chr4_2:53398696-53398715 | Msa0606770:intron | 25.0% |
| ! | TATTGTCTGTCTAATTACTA+TGG | - | chr4_2:53398770-53398789 | Msa0606770:intron | 25.0% |
| !!! | TATGAAGTATTGCATTGAAA+TGG | - | chr4_2:53398858-53398877 | Msa0606770:intron | 25.0% |
| ! | TATCTAAGTTCTTTCAGTTA+TGG | - | chr4_2:53398940-53398959 | Msa0606770:intron | 25.0% |
| ! | TTCAAACTTCCAAACTAATT+AGG | + | chr4_2:53399466-53399485 | None:intergenic | 25.0% |
| !! | TAATTAGTTTGGAAGTTTGA+AGG | - | chr4_2:53399465-53399484 | Msa0606770:CDS | 25.0% |
| ! | ATAGTATGAGCTAATAATCA+TGG | - | chr4_2:53399591-53399610 | Msa0606770:five_prime_UTR | 25.0% |
| ! | CAAATGAAAATAATCAACCA+TGG | + | chr4_2:53400081-53400100 | None:intergenic | 25.0% |
| ! | GAAAGCGATTAATATATCAA+TGG | - | chr4_2:53400147-53400166 | Msa0606770:five_prime_UTR | 25.0% |
| !! | GTTTGATTTTGCTGCTATTA+AGG | - | chr4_2:53394930-53394949 | Msa0606770:three_prime_UTR | 30.0% |
| !! | TTTTTAAGGGTTTTTCATCG+TGG | - | chr4_2:53395111-53395130 | Msa0606770:intron | 30.0% |
| !! | TTTTAAGGGTTTTTCATCGT+GGG | - | chr4_2:53395112-53395131 | Msa0606770:intron | 30.0% |
| TATAGGTAATCAAGCGAATT+TGG | + | chr4_2:53395165-53395184 | None:intergenic | 30.0% | |
| CAAAATCAAAATCAACCCTT+TGG | + | chr4_2:53395204-53395223 | None:intergenic | 30.0% | |
| !!! | GTTGATTTTGATTTTGATCG+TGG | - | chr4_2:53395208-53395227 | Msa0606770:intron | 30.0% |
| !!! | ATTTTGATTTTGATCGTGGT+TGG | - | chr4_2:53395212-53395231 | Msa0606770:intron | 30.0% |
| !!! | TTGTGCAGATTTTTTGCTAT+CGG | - | chr4_2:53395254-53395273 | Msa0606770:intron | 30.0% |
| TAGGAAAAGGTGATAAAAGA+TGG | - | chr4_2:53395350-53395369 | Msa0606770:intron | 30.0% | |
| ! | TCCCAATGGGTAATTATTTT+GGG | - | chr4_2:53395481-53395500 | Msa0606770:intron | 30.0% |
| ACCCAAAATAATTACCCATT+GGG | + | chr4_2:53395485-53395504 | None:intergenic | 30.0% | |
| AACCCAAAATAATTACCCAT+TGG | + | chr4_2:53395486-53395505 | None:intergenic | 30.0% | |
| ! | TCTAATTTGAAGCTAGTGTT+TGG | + | chr4_2:53396027-53396046 | None:intergenic | 30.0% |
| ! | AATTTTACCTCCTTAGAAAG+TGG | - | chr4_2:53396104-53396123 | Msa0606770:intron | 30.0% |
| ! | ATTTAGGTTCTTTGAATCTG+TGG | - | chr4_2:53396356-53396375 | Msa0606770:intron | 30.0% |
| !!! | GGTAGGTAGTATTTTTAAGT+GGG | + | chr4_2:53396499-53396518 | None:intergenic | 30.0% |
| !! | TGGTAGGTAGTATTTTTAAG+TGG | + | chr4_2:53396500-53396519 | None:intergenic | 30.0% |
| CAAAGAAAACAATACTTGGT+AGG | + | chr4_2:53396516-53396535 | None:intergenic | 30.0% | |
| CAAGCAAAGAAAACAATACT+TGG | + | chr4_2:53396520-53396539 | None:intergenic | 30.0% | |
| TTGATGTACTTCATGATACT+TGG | + | chr4_2:53396739-53396758 | None:intergenic | 30.0% | |
| AGCATTAAACTATGTACATC+GGG | + | chr4_2:53396853-53396872 | None:intergenic | 30.0% | |
| CAGCATTAAACTATGTACAT+CGG | + | chr4_2:53396854-53396873 | None:intergenic | 30.0% | |
| GCATATTCAAGTGACTTTAA+TGG | + | chr4_2:53396910-53396929 | None:intergenic | 30.0% | |
| TGAAAGTTGAATATGCATAG+TGG | - | chr4_2:53396944-53396963 | Msa0606770:intron | 30.0% | |
| TGCAAATTGAATATGCATAG+TGG | - | chr4_2:53397044-53397063 | Msa0606770:intron | 30.0% | |
| ATAAGTTATGGTGATATCAG+TGG | - | chr4_2:53397138-53397157 | Msa0606770:intron | 30.0% | |
| !! | GTGCACAATTTTCATTTTTG+TGG | + | chr4_2:53397441-53397460 | None:intergenic | 30.0% |
| !! | TTCACTTCTACACTTGTTTT+CGG | - | chr4_2:53397480-53397499 | Msa0606770:intron | 30.0% |
| CTCTGCAAAAATGGTTTAAA+CGG | + | chr4_2:53397518-53397537 | None:intergenic | 30.0% | |
| TAAAACATTAGGAGGAGAAT+CGG | + | chr4_2:53397685-53397704 | None:intergenic | 30.0% | |
| AACCAACTTAAAACATTAGG+AGG | + | chr4_2:53397693-53397712 | None:intergenic | 30.0% | |
| CAGAACCAACTTAAAACATT+AGG | + | chr4_2:53397696-53397715 | None:intergenic | 30.0% | |
| TTATGTTGCATCCCATAAAT+GGG | - | chr4_2:53397948-53397967 | Msa0606770:intron | 30.0% | |
| AAAACTGGAATCCCATTTAT+GGG | + | chr4_2:53397962-53397981 | None:intergenic | 30.0% | |
| ! | TTTTCGTCCTTTTACAAACT+TGG | - | chr4_2:53398539-53398558 | Msa0606770:intron | 30.0% |
| AGATGTTCCAAGTTTGTAAA+AGG | + | chr4_2:53398549-53398568 | None:intergenic | 30.0% | |
| TGGCTAAGTATAAATACATG+CGG | - | chr4_2:53398594-53398613 | Msa0606770:intron | 30.0% | |
| ! | GATTGATTCTTATCCTGTTT+AGG | - | chr4_2:53398647-53398666 | Msa0606770:intron | 30.0% |
| ACCTAGTTAACTACTGATAT+GGG | + | chr4_2:53398887-53398906 | None:intergenic | 30.0% | |
| AACCTAGTTAACTACTGATA+TGG | + | chr4_2:53398888-53398907 | None:intergenic | 30.0% | |
| AATTAATATTGTGCCTTGTG+TGG | + | chr4_2:53399074-53399093 | None:intergenic | 30.0% | |
| ! | CATTTTGCCTAATAGAACTT+AGG | - | chr4_2:53399266-53399285 | Msa0606770:CDS | 30.0% |
| GAACTTACCTAAGTTCTATT+AGG | + | chr4_2:53399276-53399295 | None:intergenic | 30.0% | |
| ATAGAACTTAGGTAAGTTCT+TGG | - | chr4_2:53399277-53399296 | Msa0606770:CDS | 30.0% | |
| AAATTGAAACATAGTGTGGT+TGG | + | chr4_2:53399433-53399452 | None:intergenic | 30.0% | |
| AAAGTCTGATACAATGTGTA+TGG | + | chr4_2:53399742-53399761 | None:intergenic | 30.0% | |
| !! | AAAAGATGGATTAGAATCTC+TGG | + | chr4_2:53400039-53400058 | None:intergenic | 30.0% |
| TCTTAAAAGTTACTGTTCCA+TGG | - | chr4_2:53400061-53400080 | Msa0606770:five_prime_UTR | 30.0% | |
| ! | GTGAGTGAGATAATAATGGA+TGG | + | chr4_2:53394543-53394562 | None:intergenic | 35.0% |
| GTGAGTGAGTGAGATAATAA+TGG | + | chr4_2:53394547-53394566 | None:intergenic | 35.0% | |
| AAAAGAGAGAGACAAGAGAT+GGG | + | chr4_2:53394663-53394682 | None:intergenic | 35.0% | |
| GCTATTACTGCACTACAATT+TGG | + | chr4_2:53394766-53394785 | None:intergenic | 35.0% | |
| GTTATGATGCTACAAAGCAA+AGG | + | chr4_2:53394972-53394991 | None:intergenic | 35.0% | |
| ! | TTTAAGGGTTTTTCATCGTG+GGG | - | chr4_2:53395113-53395132 | Msa0606770:intron | 35.0% |
| TAATCAAGCGAATTTGGTCA+TGG | + | chr4_2:53395159-53395178 | None:intergenic | 35.0% | |
| GACTCTATTCAAGCAACTAT+AGG | + | chr4_2:53395182-53395201 | None:intergenic | 35.0% | |
| TTGCTTGAATAGAGTCCAAA+GGG | - | chr4_2:53395186-53395205 | Msa0606770:intron | 35.0% | |
| !! | TTTTGTTTGGAAATGGTGGT+TGG | - | chr4_2:53395287-53395306 | Msa0606770:intron | 35.0% |
| !!! | TGGTGCTGTTTTTGGATTAT+AGG | - | chr4_2:53395307-53395326 | Msa0606770:intron | 35.0% |
| GAAAAGGTGATAAAAGATGG+AGG | - | chr4_2:53395353-53395372 | Msa0606770:intron | 35.0% | |
| CATGCAATATCATTTCAGCA+CGG | - | chr4_2:53395429-53395448 | Msa0606770:intron | 35.0% | |
| GAATAATAGCATGTCAGAGA+TGG | - | chr4_2:53395458-53395477 | Msa0606770:intron | 35.0% | |
| ! | GTCCCAATGGGTAATTATTT+TGG | - | chr4_2:53395480-53395499 | Msa0606770:intron | 35.0% |
| ! | TTTGGGTTTAGTAGTTCTTC+TGG | - | chr4_2:53395498-53395517 | Msa0606770:intron | 35.0% |
| TTGGGTTTAGTAGTTCTTCT+GGG | - | chr4_2:53395499-53395518 | Msa0606770:intron | 35.0% | |
| AACAACCATGTTGTAAGTCA+AGG | - | chr4_2:53395558-53395577 | Msa0606770:intron | 35.0% | |
| !! | TTCTTGTTGATTCAGTTCCA+GGG | - | chr4_2:53395616-53395635 | Msa0606770:intron | 35.0% |
| TCTTGATGAACAGTACAGAT+TGG | - | chr4_2:53395674-53395693 | Msa0606770:CDS | 35.0% | |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4_2:53396096-53396115 | None:intergenic | 35.0% |
| ! | GTTTGGTTCCACTTTCTAAA+GGG | + | chr4_2:53396192-53396211 | None:intergenic | 35.0% |
| ! | TGTTTGGTTCCACTTTCTAA+AGG | + | chr4_2:53396193-53396212 | None:intergenic | 35.0% |
| ACAGAAAATAAGTTGCCATG+TGG | + | chr4_2:53396317-53396336 | None:intergenic | 35.0% | |
| TAGTCCACAGATAAAAAGAC+AGG | + | chr4_2:53396431-53396450 | None:intergenic | 35.0% | |
| GAATTGATTGCAAAACAAGG+TGG | + | chr4_2:53396477-53396496 | None:intergenic | 35.0% | |
| TGGGAATTGATTGCAAAACA+AGG | + | chr4_2:53396480-53396499 | None:intergenic | 35.0% | |
| CTTCATGATACTTGGTTCAT+TGG | + | chr4_2:53396731-53396750 | None:intergenic | 35.0% | |
| ACATCGGGAAAATTGTTGAA+AGG | + | chr4_2:53396838-53396857 | None:intergenic | 35.0% | |
| AATTTGTACTGGACTCAAAG+TGG | + | chr4_2:53396975-53396994 | None:intergenic | 35.0% | |
| ATGGTGATATCAGTGGTTAA+AGG | - | chr4_2:53397145-53397164 | Msa0606770:intron | 35.0% | |
| !!! | AAAGGCAAGGTTTTAGGTTT+CGG | - | chr4_2:53397163-53397182 | Msa0606770:intron | 35.0% |
| TTAGGTTTCGGTTGTTATCA+CGG | - | chr4_2:53397175-53397194 | Msa0606770:intron | 35.0% | |
| !! | CTTCATTTTTCTGCAATTGC+TGG | + | chr4_2:53397209-53397228 | None:intergenic | 35.0% |
| AAGCTGATGGAACTTTCAAT+TGG | - | chr4_2:53397235-53397254 | Msa0606770:intron | 35.0% | |
| AGCTGATGGAACTTTCAATT+GGG | - | chr4_2:53397236-53397255 | Msa0606770:intron | 35.0% | |
| ! | CTTTCAATTGGGCTAGAATA+TGG | - | chr4_2:53397247-53397266 | Msa0606770:intron | 35.0% |
| AAACCAGATGAACACAGTTT+GGG | - | chr4_2:53397548-53397567 | Msa0606770:intron | 35.0% | |
| !! | CTCCTCCTAATGTTTTAAGT+TGG | - | chr4_2:53397688-53397707 | Msa0606770:intron | 35.0% |
| TATGCTTGACTATCTTGTCA+AGG | - | chr4_2:53397883-53397902 | Msa0606770:intron | 35.0% | |
| CTTATGTTGCATCCCATAAA+TGG | - | chr4_2:53397947-53397966 | Msa0606770:intron | 35.0% | |
| CAAAACTGGAATCCCATTTA+TGG | + | chr4_2:53397963-53397982 | None:intergenic | 35.0% | |
| !! | GAAGCATGACTTTAGAATAC+TGG | + | chr4_2:53398034-53398053 | None:intergenic | 35.0% |
| !! | TTCTAAAGTCATGCTTCTTC+AGG | - | chr4_2:53398037-53398056 | Msa0606770:intron | 35.0% |
| AGCACAGTCAAATTTGCATT+CGG | - | chr4_2:53398079-53398098 | Msa0606770:intron | 35.0% | |
| TCAAGCTCTCATTATGTTTG+CGG | - | chr4_2:53398217-53398236 | Msa0606770:intron | 35.0% | |
| TGTTTGCGGCTACATTATTT+CGG | - | chr4_2:53398231-53398250 | Msa0606770:intron | 35.0% | |
| TGTGTATGTTCAGGAATTTG+TGG | - | chr4_2:53398381-53398400 | Msa0606770:intron | 35.0% | |
| GTGTATGTTCAGGAATTTGT+GGG | - | chr4_2:53398382-53398401 | Msa0606770:intron | 35.0% | |
| TACCAATTTATCGACGTACA+AGG | - | chr4_2:53398455-53398474 | Msa0606770:intron | 35.0% | |
| ATCCACTAGACAATCTATAG+AGG | + | chr4_2:53398627-53398646 | None:intergenic | 35.0% | |
| ! | CACATTGGTTATCACATTAC+TGG | - | chr4_2:53398711-53398730 | Msa0606770:intron | 35.0% |
| TTATCACATTACTGGACTCA+TGG | - | chr4_2:53398719-53398738 | Msa0606770:intron | 35.0% | |
| TCCCATATCAGTAGTTAACT+AGG | - | chr4_2:53398883-53398902 | Msa0606770:intron | 35.0% | |
| TTCCATTCTAAACGAGTATG+TGG | - | chr4_2:53399092-53399111 | Msa0606770:intron | 35.0% | |
| ATCCACATACTCGTTTAGAA+TGG | + | chr4_2:53399097-53399116 | None:intergenic | 35.0% | |
| CACACACAAAACAAAACAGA+TGG | + | chr4_2:53399356-53399375 | None:intergenic | 35.0% | |
| ACTTATTAGGAAGGATAGAG+AGG | + | chr4_2:53399507-53399526 | None:intergenic | 35.0% | |
| ! | TTCAAGTGCACCCATATTTT+TGG | - | chr4_2:53399559-53399578 | Msa0606770:exon | 35.0% |
| TCTCATGCAGCCAAAAATAT+GGG | + | chr4_2:53399572-53399591 | None:intergenic | 35.0% | |
| ATCTCATGCAGCCAAAAATA+TGG | + | chr4_2:53399573-53399592 | None:intergenic | 35.0% | |
| !! | GATGTACATCGATTTGTGAA+AGG | + | chr4_2:53399898-53399917 | None:intergenic | 35.0% |
| ATGTACATCAATCGTTGTAG+AGG | - | chr4_2:53399909-53399928 | Msa0606770:intron | 35.0% | |
| TGTACATCAATCGTTGTAGA+GGG | - | chr4_2:53399910-53399929 | Msa0606770:intron | 35.0% | |
| CATTCATCATTTGGAAGTCT+TGG | - | chr4_2:53399941-53399960 | Msa0606770:intron | 35.0% | |
| ! | GTGTTTTACTACCATGTCAT+AGG | - | chr4_2:53400212-53400231 | Msa0606770:five_prime_UTR | 35.0% |
| TACCATGTCATAGGAATAGT+TGG | - | chr4_2:53400221-53400240 | Msa0606770:five_prime_UTR | 35.0% | |
| !! | TAGTTTGCTGTAAGATGTGA+AGG | - | chr4_2:53400259-53400278 | Msa0606770:five_prime_UTR | 35.0% |
| !! | AGTTTGCTGTAAGATGTGAA+GGG | - | chr4_2:53400260-53400279 | Msa0606770:five_prime_UTR | 35.0% |
| CCAATAAGGAAGCAGAGAAA+GGG | + | chr4_2:53394629-53394648 | None:intergenic | 40.0% | |
| ACCAATAAGGAAGCAGAGAA+AGG | + | chr4_2:53394630-53394649 | None:intergenic | 40.0% | |
| GGGTTACAACTCTACCAATA+AGG | + | chr4_2:53394643-53394662 | None:intergenic | 40.0% | |
| CAAAAGAGAGAGACAAGAGA+TGG | + | chr4_2:53394664-53394683 | None:intergenic | 40.0% | |
| GTCGTAACAGAACAACAACA+GGG | + | chr4_2:53394908-53394927 | None:intergenic | 40.0% | |
| TGTCGTAACAGAACAACAAC+AGG | + | chr4_2:53394909-53394928 | None:intergenic | 40.0% | |
| GGGTTCTGCTAATTTCATCT+GGG | - | chr4_2:53395133-53395152 | Msa0606770:intron | 40.0% | |
| GTTGCTTGAATAGAGTCCAA+AGG | - | chr4_2:53395185-53395204 | Msa0606770:intron | 40.0% | |
| ! | GTTTAGTAGTTCTTCTGGGA+TGG | - | chr4_2:53395503-53395522 | Msa0606770:intron | 40.0% |
| !! | TCTTCTGGGATGGTATATTC+TGG | - | chr4_2:53395513-53395532 | Msa0606770:intron | 40.0% |
| AACCATGTTGTAAGTCAAGG+TGG | - | chr4_2:53395561-53395580 | Msa0606770:intron | 40.0% | |
| !! | CTTCTTGTTGATTCAGTTCC+AGG | - | chr4_2:53395615-53395634 | Msa0606770:intron | 40.0% |
| TGAACAGTACAGATTGGAAG+AGG | - | chr4_2:53395680-53395699 | Msa0606770:CDS | 40.0% | |
| GAACAGTACAGATTGGAAGA+GGG | - | chr4_2:53395681-53395700 | Msa0606770:CDS | 40.0% | |
| ! | TTTGGTTCCACTTTCTAAGG+AGG | + | chr4_2:53396114-53396133 | None:intergenic | 40.0% |
| ! | CCATTTGGTTCCACTTTCTA+AGG | + | chr4_2:53396117-53396136 | None:intergenic | 40.0% |
| CCTTAGAAAGTGGAACCAAA+TGG | - | chr4_2:53396114-53396133 | Msa0606770:intron | 40.0% | |
| TAGAAAGTGGAACCAAATGG+TGG | - | chr4_2:53396117-53396136 | Msa0606770:intron | 40.0% | |
| AGAAAGTGGAACCAAATGGT+GGG | - | chr4_2:53396118-53396137 | Msa0606770:intron | 40.0% | |
| ! | ATTGAAGGCGTGTTTGATGT+TGG | + | chr4_2:53396261-53396280 | None:intergenic | 40.0% |
| AGGGTTTACATTTGTCCACA+TGG | - | chr4_2:53396299-53396318 | Msa0606770:intron | 40.0% | |
| CCACAGATAAAAAGACAGGT+TGG | + | chr4_2:53396427-53396446 | None:intergenic | 40.0% | |
| ! | CCAACCTGTCTTTTTATCTG+TGG | - | chr4_2:53396424-53396443 | Msa0606770:intron | 40.0% |
| !! | ACATCGCGAACAGTTTTATC+AGG | + | chr4_2:53396778-53396797 | None:intergenic | 40.0% |
| GATATCAGTGGTTAAAGGCA+AGG | - | chr4_2:53397150-53397169 | Msa0606770:intron | 40.0% | |
| ! | GTGGTTAAAGGCAAGGTTTT+AGG | - | chr4_2:53397157-53397176 | Msa0606770:intron | 40.0% |
| ! | ATTGGGCTAGAATATGGTTG+TGG | - | chr4_2:53397253-53397272 | Msa0606770:intron | 40.0% |
| TTACAAGTTGTGATCTGCAG+CGG | + | chr4_2:53397288-53397307 | None:intergenic | 40.0% | |
| AAAGGCAAGGAAGGTTATCT+TGG | + | chr4_2:53397367-53397386 | None:intergenic | 40.0% | |
| TAAATGGGGGAAAAAAGGCA+AGG | + | chr4_2:53397380-53397399 | None:intergenic | 40.0% | |
| CTTCGCTTTCTCTGCAAAAA+TGG | + | chr4_2:53397527-53397546 | None:intergenic | 40.0% | |
| ! | CATTTTTGCAGAGAAAGCGA+AGG | - | chr4_2:53397525-53397544 | Msa0606770:intron | 40.0% |
| GAAACCAGATGAACACAGTT+TGG | - | chr4_2:53397547-53397566 | Msa0606770:intron | 40.0% | |
| TTTCCCAAACTGTGTTCATC+TGG | + | chr4_2:53397554-53397573 | None:intergenic | 40.0% | |
| ! | GTGTTTGTTGAAGAGTTGTC+TGG | - | chr4_2:53397643-53397662 | Msa0606770:intron | 40.0% |
| GCGTTATGGAACAAAGTCAA+CGG | - | chr4_2:53398141-53398160 | Msa0606770:CDS | 40.0% | |
| AGTCAACGGACACTATATGA+TGG | - | chr4_2:53398155-53398174 | Msa0606770:CDS | 40.0% | |
| !!! | AAGTGCGTCGTTTTTGTAAG+TGG | - | chr4_2:53398331-53398350 | Msa0606770:intron | 40.0% |
| CACCTTGTACGTCGATAAAT+TGG | + | chr4_2:53398460-53398479 | None:intergenic | 40.0% | |
| CACCTCTATAGATTGTCTAG+TGG | - | chr4_2:53398622-53398641 | Msa0606770:intron | 40.0% | |
| GTTCTTTGATGAACAGTTGC+AGG | - | chr4_2:53399029-53399048 | Msa0606770:intron | 40.0% | |
| TCTTGCAAGATCCTCGTTAA+TGG | + | chr4_2:53399244-53399263 | None:intergenic | 40.0% | |
| AGCACTTTGCATGCTTGAAT+TGG | + | chr4_2:53399859-53399878 | None:intergenic | 40.0% | |
| GTACATCAATCGTTGTAGAG+GGG | - | chr4_2:53399911-53399930 | Msa0606770:intron | 40.0% | |
| GGATGGCATCATTCATCATT+TGG | - | chr4_2:53399932-53399951 | Msa0606770:intron | 40.0% | |
| !! | TTTGGTGCTACATGCAATTG+AGG | - | chr4_2:53399974-53399993 | Msa0606770:intron | 40.0% |
| CTCCAACTATTCCTATGACA+TGG | + | chr4_2:53400226-53400245 | None:intergenic | 40.0% | |
| GGAAGCAGAGAAAGGGAAAA+AGG | + | chr4_2:53394622-53394641 | None:intergenic | 45.0% | |
| CCCTTTCTCTGCTTCCTTAT+TGG | - | chr4_2:53394626-53394645 | Msa0606770:three_prime_UTR | 45.0% | |
| ACACTCTCAGCTCAACAACT+TGG | - | chr4_2:53394823-53394842 | Msa0606770:three_prime_UTR | 45.0% | |
| TCTCAGCTCAACAACTTGGT+CGG | - | chr4_2:53394827-53394846 | Msa0606770:three_prime_UTR | 45.0% | |
| GGGGTTCTGCTAATTTCATC+TGG | - | chr4_2:53395132-53395151 | Msa0606770:intron | 45.0% | |
| !!! | ATGGTGGTTGGTGCTGTTTT+TGG | - | chr4_2:53395299-53395318 | Msa0606770:intron | 45.0% |
| ATGTCAGAGATGGTCCCAAT+GGG | - | chr4_2:53395468-53395487 | Msa0606770:intron | 45.0% | |
| CACCACCTTGACTTACAACA+TGG | + | chr4_2:53395566-53395585 | None:intergenic | 45.0% | |
| TGATGTTGGCACAACACATG+TGG | + | chr4_2:53396247-53396266 | None:intergenic | 45.0% | |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | - | chr4_2:53396794-53396813 | Msa0606770:CDS | 45.0% |
| GCTTCTTCAGGATAAGTCGT+TGG | - | chr4_2:53398049-53398068 | Msa0606770:intron | 45.0% | |
| AGAATATGACCCCATGCTTG+GGG | + | chr4_2:53398111-53398130 | None:intergenic | 45.0% | |
| GAGAATATGACCCCATGCTT+GGG | + | chr4_2:53398112-53398131 | None:intergenic | 45.0% | |
| TGAGAATATGACCCCATGCT+TGG | + | chr4_2:53398113-53398132 | None:intergenic | 45.0% | |
| TTCTCACATGTCACGCGTTA+TGG | - | chr4_2:53398127-53398146 | Msa0606770:CDS | 45.0% | |
| TGCTCCATGAGTTGCTTCAT+GGG | + | chr4_2:53398408-53398427 | None:intergenic | 45.0% | |
| AGATCCTCGTTAATGGCAAC+AGG | + | chr4_2:53399237-53399256 | None:intergenic | 45.0% | |
| TCACTGTCGAGAAAGATGCT+CGG | + | chr4_2:53399661-53399680 | None:intergenic | 45.0% | |
| ATCAATCGTTGTAGAGGGGA+TGG | - | chr4_2:53399915-53399934 | Msa0606770:intron | 45.0% | |
| ! | AGTCTTGGCTGCAACTGTTT+TGG | - | chr4_2:53399956-53399975 | Msa0606770:intron | 45.0% |
| CTACATGCAATTGAGGAGTC+AGG | - | chr4_2:53399981-53400000 | Msa0606770:intron | 45.0% | |
| !! | TAAAATTAAGAAATATAAAA+AGG | + | chr4_2:53394575-53394594 | None:intergenic | 5.0% |
| ATGGAGGCAGAGTCAAACAG+AGG | - | chr4_2:53395369-53395388 | Msa0606770:intron | 50.0% | |
| TGGAGGCAGAGTCAAACAGA+GGG | - | chr4_2:53395370-53395389 | Msa0606770:intron | 50.0% | |
| CATGTCAGAGATGGTCCCAA+TGG | - | chr4_2:53395467-53395486 | Msa0606770:intron | 50.0% | |
| GTTGTAAGTCAAGGTGGTGC+TGG | - | chr4_2:53395567-53395586 | Msa0606770:intron | 50.0% | |
| CAGGGCTTAAGCATGACACA+GGG | - | chr4_2:53395634-53395653 | Msa0606770:intron | 50.0% | |
| GCTTAAGCATGACACAGGGT+TGG | - | chr4_2:53395638-53395657 | Msa0606770:intron | 50.0% | |
| !! | ACACAGGGTTGGCTGTTGAA+TGG | - | chr4_2:53395649-53395668 | Msa0606770:CDS | 50.0% |
| CGTTCGTCTCAGCACTTCAT+AGG | + | chr4_2:53395780-53395799 | None:intergenic | 50.0% | |
| ! | CCACTTTCTAAAGGGCAACC+CGG | + | chr4_2:53396184-53396203 | None:intergenic | 50.0% |
| ! | ACGCCTTCAATCAGAAGCGT+TGG | - | chr4_2:53396270-53396289 | Msa0606770:intron | 50.0% |
| GCACCAACGCTTCTGATTGA+AGG | + | chr4_2:53396276-53396295 | None:intergenic | 50.0% | |
| !! | ATCAGAAGCGTTGGTGCTAC+AGG | - | chr4_2:53396279-53396298 | Msa0606770:intron | 50.0% |
| !! | TCAGAAGCGTTGGTGCTACA+GGG | - | chr4_2:53396280-53396299 | Msa0606770:intron | 50.0% |
| GTCTGTCTGCAAGTCTGATC+AGG | - | chr4_2:53396391-53396410 | Msa0606770:intron | 50.0% | |
| !! | CTGTTCGCGATGTTGCTTTG+AGG | - | chr4_2:53396785-53396804 | Msa0606770:CDS | 50.0% |
| !! | GCGATGTTGCTTTGAGGTGT+AGG | - | chr4_2:53396791-53396810 | Msa0606770:CDS | 50.0% |
| TGGATTCATGCACACAGCAC+AGG | + | chr4_2:53396890-53396909 | None:intergenic | 50.0% | |
| TGGGGGAAAAAAGGCAAGGA+AGG | + | chr4_2:53397376-53397395 | None:intergenic | 50.0% | |
| GAATATGACCCCATGCTTGG+GGG | + | chr4_2:53398110-53398129 | None:intergenic | 50.0% | |
| CTGCTCCATGAGTTGCTTCA+TGG | + | chr4_2:53398409-53398428 | None:intergenic | 50.0% | |
| ! | TCGACCTCTTTTGCCACACA+AGG | - | chr4_2:53399058-53399077 | Msa0606770:intron | 50.0% |
| TGTGCCTTGTGTGGCAAAAG+AGG | + | chr4_2:53399065-53399084 | None:intergenic | 50.0% | |
| ! | GGCATTTGGCTCATAATGCC+AGG | + | chr4_2:53399207-53399226 | None:intergenic | 50.0% |
| TTAATGGCAACAGGCAGTGG+CGG | + | chr4_2:53399228-53399247 | None:intergenic | 50.0% | |
| TCGTTAATGGCAACAGGCAG+TGG | + | chr4_2:53399231-53399250 | None:intergenic | 50.0% | |
| ACTGCCTGTTGCCATTAACG+AGG | - | chr4_2:53399230-53399249 | Msa0606770:CDS | 50.0% | |
| ! | GATAGAGAGGTGTGACAGCA+AGG | + | chr4_2:53399494-53399513 | None:intergenic | 50.0% |
| ! | GTAAGTCAAGGTGGTGCTGG+TGG | - | chr4_2:53395570-53395589 | Msa0606770:intron | 55.0% |
| !! | GGTGCTGGTGGTAATTCAGC+TGG | - | chr4_2:53395582-53395601 | Msa0606770:intron | 55.0% |
| CCTGTGTCATGCTTAAGCCC+TGG | + | chr4_2:53395636-53395655 | None:intergenic | 55.0% | |
| CCAGGGCTTAAGCATGACAC+AGG | - | chr4_2:53395633-53395652 | Msa0606770:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr4_2:53396157-53396176 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr4_2:53396158-53396177 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr4_2:53396162-53396181 | Msa0606770:intron | 55.0% |
| ! | CCGGGTTGCCCTTTAGAAAG+TGG | - | chr4_2:53396181-53396200 | Msa0606770:intron | 55.0% |
| TGGGCCCATGAAGCAACTCA+TGG | - | chr4_2:53398401-53398420 | Msa0606770:intron | 55.0% | |
| TGCAGCATGAGTGAGATGCC+TGG | - | chr4_2:53399186-53399205 | Msa0606770:intron | 55.0% | |
| ! | CGAGAAAGATGCTCGGTGAG+TGG | + | chr4_2:53399654-53399673 | None:intergenic | 55.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr4_2:53396130-53396149 | Msa0606770:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr4_2:53396163-53396182 | Msa0606770:intron | 60.0% |
| CAACAGGCAGTGGCGGCATT+TGG | + | chr4_2:53399221-53399240 | None:intergenic | 60.0% | |
| GGTGAGTGGTGACAGGCTGA+TGG | + | chr4_2:53399640-53399659 | None:intergenic | 60.0% | |
| ! | GATGCTCGGTGAGTGGTGAC+AGG | + | chr4_2:53399647-53399666 | None:intergenic | 60.0% |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr4_2:53396132-53396151 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr4_2:53396145-53396164 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr4_2:53396146-53396165 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr4_2:53396145-53396164 | Msa0606770:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr4_2:53396146-53396165 | Msa0606770:intron | 65.0% | |
| TTCGGCGCTACCCCCAAGCA+TGG | - | chr4_2:53398097-53398116 | Msa0606770:intron | 65.0% | |
| TCGGCGCTACCCCCAAGCAT+GGG | - | chr4_2:53398098-53398117 | Msa0606770:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr4_2:53396147-53396166 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr4_2:53396151-53396170 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr4_2:53396152-53396171 | None:intergenic | 70.0% | |
| CGGCGCTACCCCCAAGCATG+GGG | - | chr4_2:53398099-53398118 | Msa0606770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53394535 | 53400394 | 53394535 | ID=Msa0606770;Name=Msa0606770 |
| chr4_2 | mRNA | 53394535 | 53400394 | 53394535 | ID=Msa0606770-mRNA-1;Parent=Msa0606770;Name=Msa0606770-mRNA-1;_AED=0.20;_eAED=0.20;_QI=624|1|1|1|0.75|0.66|9|529|286 |
| chr4_2 | exon | 53394535 | 53395063 | 53394535 | ID=Msa0606770-mRNA-1:exon:13217;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53395642 | 53395738 | 53395642 | ID=Msa0606770-mRNA-1:exon:13216;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53395823 | 53395884 | 53395823 | ID=Msa0606770-mRNA-1:exon:13215;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53396453 | 53396535 | 53396453 | ID=Msa0606770-mRNA-1:exon:13214;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53396753 | 53396870 | 53396753 | ID=Msa0606770-mRNA-1:exon:13213;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53397337 | 53397393 | 53397337 | ID=Msa0606770-mRNA-1:exon:13212;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53398107 | 53398206 | 53398107 | ID=Msa0606770-mRNA-1:exon:13211;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53399217 | 53399847 | 53399217 | ID=Msa0606770-mRNA-1:exon:13210;Parent=Msa0606770-mRNA-1 |
| chr4_2 | exon | 53400058 | 53400394 | 53400058 | ID=Msa0606770-mRNA-1:exon:13209;Parent=Msa0606770-mRNA-1 |
| chr4_2 | five_prime_UTR | 53400058 | 53400394 | 53400058 | ID=Msa0606770-mRNA-1:five_prime_utr;Parent=Msa0606770-mRNA-1 |
| chr4_2 | five_prime_UTR | 53399561 | 53399847 | 53399561 | ID=Msa0606770-mRNA-1:five_prime_utr;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53399217 | 53399560 | 53399217 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53398107 | 53398206 | 53398107 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53397337 | 53397393 | 53397337 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53396753 | 53396870 | 53396753 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53396453 | 53396535 | 53396453 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53395823 | 53395884 | 53395823 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | CDS | 53395642 | 53395738 | 53395642 | ID=Msa0606770-mRNA-1:cds;Parent=Msa0606770-mRNA-1 |
| chr4_2 | three_prime_UTR | 53394535 | 53395063 | 53394535 | ID=Msa0606770-mRNA-1:three_prime_utr;Parent=Msa0606770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
