AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606730 MtrunA17_Chr1g0163301 62.630 289 100 4 1 286 1 284 9.69e-125 359
Msa0606730 MtrunA17_Chr4g0037581 98.214 168 1 2 1 168 1 166 3.67e-118 336
Msa0606730 MtrunA17_Chr2g0329631 44.105 229 110 4 72 283 6 233 3.27e-58 186
Msa0606730 MtrunA17_Chr4g0037591 90.217 92 9 0 167 258 4 95 2.92e-57 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606730 AT1G60670.5 46.094 256 111 6 37 286 1 235 7.57e-74 227
Msa0606730 AT1G60670.2 46.094 256 111 6 37 286 1 235 9.41e-74 226
Msa0606730 AT1G60670.3 44.922 256 109 6 37 286 1 230 1.54e-70 218
Msa0606730 AT1G10820.2 45.850 253 120 6 37 286 1 239 6.67e-66 207
Msa0606730 AT1G10820.1 48.444 225 98 4 64 286 5 213 7.89e-65 203
Msa0606730 AT3G07565.3 42.922 219 118 2 68 283 37 251 7.50e-60 191
Msa0606730 AT3G07565.1 43.379 219 116 3 68 283 37 250 3.45e-59 189
Msa0606730 AT1G60670.4 42.358 229 105 6 37 259 1 208 5.21e-57 182
Msa0606730 AT3G07565.4 41.228 228 118 3 68 283 37 260 7.50e-57 184
Msa0606730 AT1G68160.1 42.446 278 137 3 1 278 3 257 9.20e-50 166
Msa0606730 AT1G60670.1 42.157 204 91 6 37 234 1 183 2.14e-48 160
Msa0606730 AT3G07565.2 40.945 127 67 3 68 191 37 158 4.07e-25 99.4
Msa0606730 AT2G43470.1 32.984 191 101 8 95 277 24 195 1.44e-15 74.3

Find 114 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTCTCTGCTTCCTTAT+TGG 0.081617 4_2:+53351770 Msa0606730:five_prime_UTR
GTCCCAATGGGTAATTATTT+TGG 0.089118 4_2:+53352613 Msa0606730:CDS
CTTCTTGTTGATTCAGTTCC+AGG 0.161351 4_2:+53352748 Msa0606730:CDS
TTTGGGTTTAGTAGTTCTTC+TGG 0.191137 4_2:+53352631 Msa0606730:CDS
GCTATTACTGCACTACAATT+TGG 0.220821 4_2:-53351907 None:intergenic
GGAAGCAGAGAAAGGGAAAA+AGG 0.233659 4_2:-53351763 None:intergenic
TCTTGCAAGATCCTCGTTAA+TGG 0.242729 4_2:-53356321 None:intergenic
GGGGTTCTGCTAATTTCATC+TGG 0.255132 4_2:+53352268 Msa0606730:five_prime_UTR
CACCTTGTACGTCGATAAAT+TGG 0.260162 4_2:-53355537 None:intergenic
TATAAATAAATCAATCTTAT+AGG 0.268216 4_2:+53357205 Msa0606730:three_prime_UTR
CTGCTCCATGAGTTGCTTCA+TGG 0.279827 4_2:-53355486 None:intergenic
AAAGTTGCAAATAAGTAAAA+AGG 0.284009 4_2:+53351994 Msa0606730:five_prime_UTR
AGTCTTGGCTGCAACTGTTT+TGG 0.286955 4_2:+53357036 Msa0606730:three_prime_UTR
GGAAAATTGTTGATAGAAAT+AGG 0.290004 4_2:+53352464 Msa0606730:five_prime_UTR
CTTCATGATACTTGGTTCAT+TGG 0.301764 4_2:-53353808 None:intergenic
TATAGGTAATCAAGCGAATT+TGG 0.307134 4_2:-53352298 None:intergenic
TAAAATTAAGAAATATAAAA+AGG 0.310085 4_2:-53351716 None:intergenic
CAACAGGCAGTGGCGGCATT+TGG 0.339764 4_2:-53356298 None:intergenic
TTTCCCAAACTGTGTTCATC+TGG 0.342616 4_2:-53354631 None:intergenic
CATTCATCATTTGGAAGTCT+TGG 0.352947 4_2:+53357021 Msa0606730:three_prime_UTR
TTCTCACATGTCACGCGTTA+TGG 0.353724 4_2:+53355207 Msa0606730:CDS
GAACTTACCTAAGTTCTATT+AGG 0.367237 4_2:-53356353 None:intergenic
GGATGGCATCATTCATCATT+TGG 0.367589 4_2:+53357012 Msa0606730:three_prime_UTR
GAAACCAGATGAACACAGTT+TGG 0.374047 4_2:+53354627 Msa0606730:CDS
TGCTCCATGAGTTGCTTCAT+GGG 0.376053 4_2:-53355485 None:intergenic
TCTTCTGGGATGGTATATTC+TGG 0.384527 4_2:+53352646 Msa0606730:CDS
TTGGGTTTAGTAGTTCTTCT+GGG 0.387168 4_2:+53352632 Msa0606730:CDS
GTGAGTGAGTGAGATAATAA+TGG 0.396453 4_2:-53351688 None:intergenic
GACTCTATTCAAGCAACTAT+AGG 0.397589 4_2:-53352315 None:intergenic
GATTGATTTATTTATACAAC+AGG 0.400688 4_2:-53357198 None:intergenic
AAAAGATGGATTAGAATCTC+TGG 0.404803 4_2:-53357116 None:intergenic
CTGTTCGCGATGTTGCTTTG+AGG 0.408201 4_2:+53353865 Msa0606730:CDS
GGATAAAATAACATATCTAA+TGG 0.422717 4_2:+53357433 Msa0606730:three_prime_UTR
GGGTTACAACTCTACCAATA+AGG 0.427932 4_2:-53351784 None:intergenic
ATAGATAACAGAATATTGAT+TGG 0.430898 4_2:+53357270 Msa0606730:three_prime_UTR
CAAAATCAAAATCAACCCTT+TGG 0.432558 4_2:-53352337 None:intergenic
TTCTTGTTGATTCAGTTCCA+GGG 0.434162 4_2:+53352749 Msa0606730:CDS
TTGATGTACTTCATGATACT+TGG 0.436387 4_2:-53353816 None:intergenic
TACCATGTCATAGGAATAGT+TGG 0.442576 4_2:+53357301 Msa0606730:three_prime_UTR
AGCACAGTCAAATTTGCATT+CGG 0.444424 4_2:+53355159 Msa0606730:CDS
AGATCCTCGTTAATGGCAAC+AGG 0.447502 4_2:-53356314 None:intergenic
ACCCAAAATAATTACCCATT+GGG 0.452792 4_2:-53352615 None:intergenic
GAGAATATGACCCCATGCTT+GGG 0.454600 4_2:-53355189 None:intergenic
ACCAATAAGGAAGCAGAGAA+AGG 0.454901 4_2:-53351771 None:intergenic
AAACCAGATGAACACAGTTT+GGG 0.464720 4_2:+53354628 Msa0606730:CDS
AACCCAAAATAATTACCCAT+TGG 0.481651 4_2:-53352616 None:intergenic
GTTTAGTAGTTCTTCTGGGA+TGG 0.481723 4_2:+53352636 Msa0606730:CDS
GCGATGTTGCTTTGAGGTGT+AGG 0.484163 4_2:+53353871 Msa0606730:CDS
GTGTATGTTCAGGAATTTGT+GGG 0.484238 4_2:+53355462 Msa0606730:intron
TAGGAAAAGGTGATAAAAGA+TGG 0.489090 4_2:+53352483 Msa0606730:exon
GTTGTAAGTCAAGGTGGTGC+TGG 0.490288 4_2:+53352700 Msa0606730:CDS
TCGTTAATGGCAACAGGCAG+TGG 0.497673 4_2:-53356308 None:intergenic
ATCCACATACTCGTTTAGAA+TGG 0.498102 4_2:-53356174 None:intergenic
CTACATGCAATTGAGGAGTC+AGG 0.499010 4_2:+53357061 Msa0606730:three_prime_UTR
GGCATTTGGCTCATAATGCC+AGG 0.504404 4_2:-53356284 None:intergenic
CAAAAGAGAGAGACAAGAGA+TGG 0.506304 4_2:-53351805 None:intergenic
GAAAGCGATTAATATATCAA+TGG 0.508216 4_2:+53357227 Msa0606730:three_prime_UTR
TCTTAAAAGTTACTGTTCCA+TGG 0.513560 4_2:+53357141 Msa0606730:three_prime_UTR
TGAGAATATGACCCCATGCT+TGG 0.517631 4_2:-53355190 None:intergenic
TAGTTTGCTGTAAGATGTGA+AGG 0.520842 4_2:+53357339 Msa0606730:three_prime_UTR
GGGTTCTGCTAATTTCATCT+GGG 0.526645 4_2:+53352269 Msa0606730:five_prime_UTR
TTGCTTGAATAGAGTCCAAA+GGG 0.527216 4_2:+53352322 Msa0606730:five_prime_UTR
TCTTGATGAACAGTACAGAT+TGG 0.528915 4_2:+53352807 Msa0606730:CDS
CCAATAAGGAAGCAGAGAAA+GGG 0.532361 4_2:-53351770 None:intergenic
ACACTCTCAGCTCAACAACT+TGG 0.533363 4_2:+53351967 Msa0606730:five_prime_UTR
TTTGGTGCTACATGCAATTG+AGG 0.535688 4_2:+53357054 Msa0606730:three_prime_UTR
GGTGCTGGTGGTAATTCAGC+TGG 0.543025 4_2:+53352715 Msa0606730:CDS
ATCAATCGTTGTAGAGGGGA+TGG 0.545935 4_2:+53356995 Msa0606730:three_prime_UTR
CCTGTGTCATGCTTAAGCCC+TGG 0.552020 4_2:-53352766 None:intergenic
ATGTCAGAGATGGTCCCAAT+GGG 0.554489 4_2:+53352601 Msa0606730:CDS
TGTGTATGTTCAGGAATTTG+TGG 0.554772 4_2:+53355461 Msa0606730:intron
GATGTACATCGATTTGTGAA+AGG 0.557695 4_2:-53356975 None:intergenic
TGAACAGTACAGATTGGAAG+AGG 0.560367 4_2:+53352813 Msa0606730:CDS
ACACAGGGTTGGCTGTTGAA+TGG 0.567227 4_2:+53352782 Msa0606730:CDS
TGGGCCCATGAAGCAACTCA+TGG 0.567392 4_2:+53355481 Msa0606730:CDS
TTGTTGATAGAAATAGGAAA+AGG 0.568122 4_2:+53352470 Msa0606730:five_prime_UTR
CATGTCAGAGATGGTCCCAA+TGG 0.570192 4_2:+53352600 Msa0606730:CDS
CCAGGGCTTAAGCATGACAC+AGG 0.572689 4_2:+53352766 Msa0606730:CDS
AAAAGAGAGAGACAAGAGAT+GGG 0.575868 4_2:-53351804 None:intergenic
TGTACATCAATCGTTGTAGA+GGG 0.578084 4_2:+53356990 Msa0606730:three_prime_UTR
GCTTCTTCAGGATAAGTCGT+TGG 0.579374 4_2:+53355129 Msa0606730:intron
AACAACCATGTTGTAAGTCA+AGG 0.581264 4_2:+53352691 Msa0606730:CDS
TGTGCCTTGTGTGGCAAAAG+AGG 0.582507 4_2:-53356142 None:intergenic
GAATAATAGCATGTCAGAGA+TGG 0.583965 4_2:+53352591 Msa0606730:CDS
GAGATAATAATGGATGGTTG+TGG 0.584541 4_2:-53351678 None:intergenic
ATGTACATCAATCGTTGTAG+AGG 0.586605 4_2:+53356989 Msa0606730:three_prime_UTR
TACCAATTTATCGACGTACA+AGG 0.592537 4_2:+53355535 Msa0606730:CDS
CACCACCTTGACTTACAACA+TGG 0.596965 4_2:-53352696 None:intergenic
CTCCAACTATTCCTATGACA+TGG 0.600650 4_2:-53357303 None:intergenic
GAAAAGGTGATAAAAGATGG+AGG 0.605591 4_2:+53352486 Msa0606730:exon
GTTGCTTGAATAGAGTCCAA+AGG 0.606694 4_2:+53352321 Msa0606730:five_prime_UTR
TCTCAGCTCAACAACTTGGT+CGG 0.607644 4_2:+53351971 Msa0606730:five_prime_UTR
AGTCAACGGACACTATATGA+TGG 0.610616 4_2:+53355235 Msa0606730:CDS
GCTTAAGCATGACACAGGGT+TGG 0.613167 4_2:+53352771 Msa0606730:CDS
TGCAGCATGAGTGAGATGCC+TGG 0.617604 4_2:+53356266 Msa0606730:intron
TAATCAAGCGAATTTGGTCA+TGG 0.620638 4_2:-53352292 None:intergenic
AATTAATATTGTGCCTTGTG+TGG 0.630893 4_2:-53356151 None:intergenic
CAAATGAAAATAATCAACCA+TGG 0.635235 4_2:-53357158 None:intergenic
ATGTTGCTTTGAGGTGTAGG+TGG 0.642936 4_2:+53353874 Msa0606730:CDS
AGAATATGACCCCATGCTTG+GGG 0.646474 4_2:-53355188 None:intergenic
TTAATGGCAACAGGCAGTGG+CGG 0.648108 4_2:-53356305 None:intergenic
TGGAGGCAGAGTCAAACAGA+GGG 0.653189 4_2:+53352503 Msa0606730:CDS
GTGAGTGAGATAATAATGGA+TGG 0.654208 4_2:-53351684 None:intergenic
GTAAGTCAAGGTGGTGCTGG+TGG 0.656921 4_2:+53352703 Msa0606730:CDS
ATGGAGGCAGAGTCAAACAG+AGG 0.667685 4_2:+53352502 Msa0606730:CDS
GAATATGACCCCATGCTTGG+GGG 0.678829 4_2:-53355187 None:intergenic
GAACAGTACAGATTGGAAGA+GGG 0.679393 4_2:+53352814 Msa0606730:CDS
CAGGGCTTAAGCATGACACA+GGG 0.681848 4_2:+53352767 Msa0606730:CDS
AACCATGTTGTAAGTCAAGG+TGG 0.691347 4_2:+53352694 Msa0606730:CDS
GCGTTATGGAACAAAGTCAA+CGG 0.697757 4_2:+53355221 Msa0606730:CDS
GTACATCAATCGTTGTAGAG+GGG 0.701562 4_2:+53356991 Msa0606730:three_prime_UTR
ACTGCCTGTTGCCATTAACG+AGG 0.709980 4_2:+53356310 Msa0606730:CDS
AGTTTGCTGTAAGATGTGAA+GGG 0.713532 4_2:+53357340 Msa0606730:three_prime_UTR
CATGCAATATCATTTCAGCA+CGG 0.730065 4_2:+53352562 Msa0606730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATATTTAATTTTTTA+TGG - chr4_2:53354815-53354834 None:intergenic 0.0%
!! TTATTTATTTATTGCTAATT+TGG + chr4_2:53352874-53352893 Msa0606730:intron 10.0%
!!! ATAAATTTCCAATTTTAAAT+GGG - chr4_2:53354475-53354494 None:intergenic 10.0%
!! ATTAAAAAAACTTAAGAAAA+TGG - chr4_2:53355270-53355289 None:intergenic 10.0%
!! AATATGATCATTAATTTAAA+TGG - chr4_2:53355834-53355853 None:intergenic 10.0%
!! TATAAATAAATCAATCTTAT+AGG + chr4_2:53357205-53357224 Msa0606730:three_prime_UTR 10.0%
!!! TAAGTTGAACAATAAATTTA+AGG + chr4_2:53353128-53353147 Msa0606730:intron 15.0%
!!! TTATTTTCTTAGTTTATGTT+TGG - chr4_2:53353287-53353306 None:intergenic 15.0%
!! ATAACAATCATGAAATTAAA+AGG - chr4_2:53353770-53353789 None:intergenic 15.0%
!! CTTTAATATGTTATAAGTTA+TGG + chr4_2:53354206-53354225 Msa0606730:intron 15.0%
!!! TAAATTTCCAATTTTAAATG+GGG - chr4_2:53354474-53354493 None:intergenic 15.0%
!!! GATAAATTTCCAATTTTAAA+TGG - chr4_2:53354476-53354495 None:intergenic 15.0%
!!! TTTAAAATTGGAAATTTATC+AGG + chr4_2:53354476-53354495 Msa0606730:intron 15.0%
!! TTAAAATTGGAAATTTATCA+GGG + chr4_2:53354477-53354496 Msa0606730:intron 15.0%
!! TATAATGAAAGATGAAAATT+TGG - chr4_2:53355917-53355936 None:intergenic 15.0%
!! AAAGTTGCAAATAAGTAAAA+AGG + chr4_2:53351994-53352013 Msa0606730:five_prime_UTR 20.0%
!!! ATGAAAAGTTGATGTTTTTA+AGG - chr4_2:53352141-53352160 None:intergenic 20.0%
!!! TGTTATATTTTGTTTGGAAA+TGG + chr4_2:53352416-53352435 Msa0606730:five_prime_UTR 20.0%
!! ATAAAAACAAATGACTTACT+TGG - chr4_2:53352845-53352864 None:intergenic 20.0%
!! GTGTCAACTTAAATTATTAT+CGG - chr4_2:53352950-53352969 None:intergenic 20.0%
!! AGACACACTTAAATTATTAT+CGG - chr4_2:53352972-53352991 None:intergenic 20.0%
!!! AGATTCTATAAAATTGATTC+TGG + chr4_2:53353051-53353070 Msa0606730:intron 20.0%
!! TTCAACTTACATTTATATGA+AGG - chr4_2:53353117-53353136 None:intergenic 20.0%
!!! AGAACCTAAATTATTTTCAT+GGG - chr4_2:53353425-53353444 None:intergenic 20.0%
!!! AAGAACCTAAATTATTTTCA+TGG - chr4_2:53353426-53353445 None:intergenic 20.0%
!! CTTGTATTCAATAATTTGAT+TGG + chr4_2:53353614-53353633 Msa0606730:intron 20.0%
!!! TTTAGAATTCAAATTTGTAC+TGG - chr4_2:53354066-53354085 None:intergenic 20.0%
!! ATAATTGCAACATATTAAAG+TGG - chr4_2:53354099-53354118 None:intergenic 20.0%
!! ATGAAACATAACCTTTAAAT+AGG - chr4_2:53354392-53354411 None:intergenic 20.0%
!!! AAATTTCCAATTTTAAATGG+GGG - chr4_2:53354473-53354492 None:intergenic 20.0%
!!! CAGAAAAGTATGTAAAATTT+TGG + chr4_2:53354666-53354685 Msa0606730:intron 20.0%
!! TTGATTCAATATATCAAAAC+TGG - chr4_2:53355057-53355076 None:intergenic 20.0%
!! TTGAATCAATTAATGTCTTT+AGG + chr4_2:53355068-53355087 Msa0606730:intron 20.0%
!! TATTTAATGAAATGTGGAAT+TGG - chr4_2:53355439-53355458 None:intergenic 20.0%
!!! AGTTTTGTTTTTGTAAATAC+TGG + chr4_2:53355584-53355603 Msa0606730:intron 20.0%
!! ATTTGTAACAACTAATTTAG+TGG + chr4_2:53355654-53355673 Msa0606730:intron 20.0%
!! TAATGAAGTTTACTTGTATT+TGG + chr4_2:53356200-53356219 Msa0606730:intron 20.0%
!! GAATCTATTCTATTGTTAAT+TGG - chr4_2:53356488-53356507 None:intergenic 20.0%
!! AATTAAATTGAAACATAGTG+TGG - chr4_2:53356517-53356536 None:intergenic 20.0%
!!! ATTGATTTACCTAATTAGTT+TGG + chr4_2:53356534-53356553 Msa0606730:intron 20.0%
!!! TGCATATTCATTATACATTT+TGG + chr4_2:53356796-53356815 Msa0606730:intron 20.0%
!! TATCATATACAAATGTTGAT+TGG + chr4_2:53356902-53356921 Msa0606730:intron 20.0%
!!! TAACTTTTAAGATCAAAAGA+TGG - chr4_2:53357133-53357152 None:intergenic 20.0%
!!! TTTTCATTTGAAACAAAACT+TGG + chr4_2:53357171-53357190 Msa0606730:three_prime_UTR 20.0%
!!! GATTGATTTATTTATACAAC+AGG - chr4_2:53357201-53357220 None:intergenic 20.0%
!! ATAGATAACAGAATATTGAT+TGG + chr4_2:53357270-53357289 Msa0606730:three_prime_UTR 20.0%
!!! TAAATAGTAGTTCATTTTGT+AGG + chr4_2:53357412-53357431 Msa0606730:three_prime_UTR 20.0%
!! GGATAAAATAACATATCTAA+TGG + chr4_2:53357433-53357452 Msa0606730:three_prime_UTR 20.0%
!!! AACACTGATTTTTGTTTTTC+TGG + chr4_2:53352172-53352191 Msa0606730:intron 25.0%
!!! ACACTGATTTTTGTTTTTCT+GGG + chr4_2:53352173-53352192 Msa0606730:intron 25.0%
!!! TTCTTCTCTTTCTTTTTTCT+AGG + chr4_2:53352196-53352215 Msa0606730:intron 25.0%
!!! TTCATTTTTGAGCTAATGTT+TGG + chr4_2:53352223-53352242 Msa0606730:five_prime_UTR 25.0%
!! AGCTAATGTTTGGATTTTTA+AGG + chr4_2:53352233-53352252 Msa0606730:five_prime_UTR 25.0%
!! GCTAATGTTTGGATTTTTAA+GGG + chr4_2:53352234-53352253 Msa0606730:five_prime_UTR 25.0%
!! CGGTATTGTTATATTTTGTT+TGG + chr4_2:53352410-53352429 Msa0606730:five_prime_UTR 25.0%
!!! TATATTTTGTTTGGAAATGG+TGG + chr4_2:53352419-53352438 Msa0606730:five_prime_UTR 25.0%
!! GGAAAATTGTTGATAGAAAT+AGG + chr4_2:53352464-53352483 Msa0606730:five_prime_UTR 25.0%
!! TTGTTGATAGAAATAGGAAA+AGG + chr4_2:53352470-53352489 Msa0606730:five_prime_UTR 25.0%
!! AGGCTAAAATTCAATTTTAG+CGG + chr4_2:53353148-53353167 Msa0606730:intron 25.0%
! CTTTCCCATGAAAATAATTT+AGG + chr4_2:53353418-53353437 Msa0606730:intron 25.0%
!!! TGTGCTAAATTTGTTTTTCA+TGG + chr4_2:53353685-53353704 Msa0606730:intron 25.0%
!!! ATGCTTTAGAAACTATAAAG+TGG - chr4_2:53354155-53354174 None:intergenic 25.0%
! AATGAAGAAAATAAAGCTGA+TGG + chr4_2:53354302-53354321 Msa0606730:intron 25.0%
! CAACTTGTAATCCTATTTAA+AGG + chr4_2:53354378-53354397 Msa0606730:intron 25.0%
!! AATTTTAAATGGGGGAAAAA+AGG - chr4_2:53354465-53354484 None:intergenic 25.0%
!!! TTTTTTCCCCCATTTAAAAT+TGG + chr4_2:53354464-53354483 Msa0606730:intron 25.0%
! TTGTGGATAATATGTTATAC+TGG - chr4_2:53354504-53354523 None:intergenic 25.0%
! TTTCATAGATCTTAAAACTG+AGG - chr4_2:53354839-53354858 None:intergenic 25.0%
! CACAAGTATTTAATGAAATG+TGG - chr4_2:53355445-53355464 None:intergenic 25.0%
! TTAAATACTTGTGTATGTTC+AGG + chr4_2:53355452-53355471 Msa0606730:intron 25.0%
! AACAAAACTGAAACATATGA+TGG - chr4_2:53355573-53355592 None:intergenic 25.0%
! AATTTGAACATTTCCTAAAC+AGG - chr4_2:53355743-53355762 None:intergenic 25.0%
! GAAAGATATCATATTCACAT+TGG + chr4_2:53355776-53355795 Msa0606730:intron 25.0%
! TATTGTCTGTCTAATTACTA+TGG + chr4_2:53355850-53355869 Msa0606730:intron 25.0%
!!! TATGAAGTATTGCATTGAAA+TGG + chr4_2:53355938-53355957 Msa0606730:intron 25.0%
! TATCTAAGTTCTTTCAGTTA+TGG + chr4_2:53356020-53356039 Msa0606730:intron 25.0%
! TTCAAACTTCCAAACTAATT+AGG - chr4_2:53356546-53356565 None:intergenic 25.0%
!! TAATTAGTTTGGAAGTTTGA+AGG + chr4_2:53356545-53356564 Msa0606730:intron 25.0%
! CTAATTTCAACTTATTAGGA+AGG - chr4_2:53356596-53356615 None:intergenic 25.0%
! CTCACTAATTTCAACTTATT+AGG - chr4_2:53356600-53356619 None:intergenic 25.0%
!! CTAATAAGTTGAAATTAGTG+AGG + chr4_2:53356598-53356617 Msa0606730:intron 25.0%
!!! ATTAGTGAGGTTTTTCAATT+TGG + chr4_2:53356611-53356630 Msa0606730:intron 25.0%
! CAAATGAAAATAATCAACCA+TGG - chr4_2:53357161-53357180 None:intergenic 25.0%
! GAAAGCGATTAATATATCAA+TGG + chr4_2:53357227-53357246 Msa0606730:three_prime_UTR 25.0%
!! GTTTGATTTTGCTGCTATTA+AGG + chr4_2:53352066-53352085 Msa0606730:intron 30.0%
!! TTTTTAAGGGTTTTTCATCG+TGG + chr4_2:53352247-53352266 Msa0606730:five_prime_UTR 30.0%
!! TTTTAAGGGTTTTTCATCGT+GGG + chr4_2:53352248-53352267 Msa0606730:five_prime_UTR 30.0%
TATAGGTAATCAAGCGAATT+TGG - chr4_2:53352301-53352320 None:intergenic 30.0%
CAAAATCAAAATCAACCCTT+TGG - chr4_2:53352340-53352359 None:intergenic 30.0%
!!! GTTGATTTTGATTTTGATCG+TGG + chr4_2:53352344-53352363 Msa0606730:five_prime_UTR 30.0%
!!! ATTTTGATTTTGATCGTGGT+TGG + chr4_2:53352348-53352367 Msa0606730:five_prime_UTR 30.0%
!!! TTGTGCAGATTTTTTGCTAT+CGG + chr4_2:53352390-53352409 Msa0606730:five_prime_UTR 30.0%
TAGGAAAAGGTGATAAAAGA+TGG + chr4_2:53352483-53352502 Msa0606730:exon 30.0%
! TCCCAATGGGTAATTATTTT+GGG + chr4_2:53352614-53352633 Msa0606730:CDS 30.0%
ACCCAAAATAATTACCCATT+GGG - chr4_2:53352618-53352637 None:intergenic 30.0%
AACCCAAAATAATTACCCAT+TGG - chr4_2:53352619-53352638 None:intergenic 30.0%
! TCTAATTTGAAGCTAGTGTT+TGG - chr4_2:53353182-53353201 None:intergenic 30.0%
! AATTTTACCTCCTTAGAAAG+TGG + chr4_2:53353259-53353278 Msa0606730:intron 30.0%
! ATTTAGGTTCTTTGAATCTG+TGG + chr4_2:53353434-53353453 Msa0606730:intron 30.0%
CAAAGAAAACAATACTTGGT+AGG - chr4_2:53353594-53353613 None:intergenic 30.0%
CAAGCAAAGAAAACAATACT+TGG - chr4_2:53353598-53353617 None:intergenic 30.0%
TTGATGTACTTCATGATACT+TGG - chr4_2:53353819-53353838 None:intergenic 30.0%
AGCATTAAACTATGTACATC+GGG - chr4_2:53353933-53353952 None:intergenic 30.0%
CAGCATTAAACTATGTACAT+CGG - chr4_2:53353934-53353953 None:intergenic 30.0%
GCATATTCAAGTGACTTTAA+TGG - chr4_2:53353990-53354009 None:intergenic 30.0%
TGAAAGTTGAATATGCATAG+TGG + chr4_2:53354024-53354043 Msa0606730:intron 30.0%
TGCAAATTGAATATGCATAG+TGG + chr4_2:53354124-53354143 Msa0606730:intron 30.0%
ATAAGTTATGGTGATATCAG+TGG + chr4_2:53354218-53354237 Msa0606730:intron 30.0%
TTAGGTTTCAGTTGTTATCA+CGG + chr4_2:53354255-53354274 Msa0606730:intron 30.0%
!! GTGCACAATTTTCATTTTTG+TGG - chr4_2:53354521-53354540 None:intergenic 30.0%
!! TTCACTTCTACACTTGTTTT+CGG + chr4_2:53354560-53354579 Msa0606730:intron 30.0%
CTCTGCAAAAATGGTTTAAA+CGG - chr4_2:53354598-53354617 None:intergenic 30.0%
TAAAACATTAGGAGGAGAAT+CGG - chr4_2:53354765-53354784 None:intergenic 30.0%
AACCAACTTAAAACATTAGG+AGG - chr4_2:53354773-53354792 None:intergenic 30.0%
CAGAACCAACTTAAAACATT+AGG - chr4_2:53354776-53354795 None:intergenic 30.0%
TTATGTTGCATCCCATAAAT+GGG + chr4_2:53355028-53355047 Msa0606730:intron 30.0%
AAAACTGGAATCCCATTTAT+GGG - chr4_2:53355042-53355061 None:intergenic 30.0%
! TTTTCGTCCTTTTACAAACT+TGG + chr4_2:53355619-53355638 Msa0606730:intron 30.0%
AGATGTTCCAAGTTTGTAAA+AGG - chr4_2:53355629-53355648 None:intergenic 30.0%
TGGCTAAGTATAAATACATG+CGG + chr4_2:53355674-53355693 Msa0606730:intron 30.0%
! GATTGATTCTTATCCTGTTT+AGG + chr4_2:53355727-53355746 Msa0606730:intron 30.0%
ACCTAGTTAACTACTGATAT+GGG - chr4_2:53355967-53355986 None:intergenic 30.0%
AACCTAGTTAACTACTGATA+TGG - chr4_2:53355968-53355987 None:intergenic 30.0%
AATTAATATTGTGCCTTGTG+TGG - chr4_2:53356154-53356173 None:intergenic 30.0%
! CATTTTGCCTAATAGAACTT+AGG + chr4_2:53356346-53356365 Msa0606730:CDS 30.0%
GAACTTACCTAAGTTCTATT+AGG - chr4_2:53356356-53356375 None:intergenic 30.0%
ATAGAACTTAGGTAAGTTCT+TGG + chr4_2:53356357-53356376 Msa0606730:intron 30.0%
AAATTGAAACATAGTGTGGT+TGG - chr4_2:53356513-53356532 None:intergenic 30.0%
AAAGTCTGATACAATGTGTA+TGG - chr4_2:53356822-53356841 None:intergenic 30.0%
!! AAAAGATGGATTAGAATCTC+TGG - chr4_2:53357119-53357138 None:intergenic 30.0%
TCTTAAAAGTTACTGTTCCA+TGG + chr4_2:53357141-53357160 Msa0606730:three_prime_UTR 30.0%
! GTGAGTGAGATAATAATGGA+TGG - chr4_2:53351687-53351706 None:intergenic 35.0%
GTGAGTGAGTGAGATAATAA+TGG - chr4_2:53351691-53351710 None:intergenic 35.0%
AAAAGAGAGAGACAAGAGAT+GGG - chr4_2:53351807-53351826 None:intergenic 35.0%
GCTATTACTGCACTACAATT+TGG - chr4_2:53351910-53351929 None:intergenic 35.0%
GTTATGATGCTACAAAGCAA+AGG - chr4_2:53352108-53352127 None:intergenic 35.0%
! TTTAAGGGTTTTTCATCGTG+GGG + chr4_2:53352249-53352268 Msa0606730:five_prime_UTR 35.0%
TAATCAAGCGAATTTGGTCA+TGG - chr4_2:53352295-53352314 None:intergenic 35.0%
GACTCTATTCAAGCAACTAT+AGG - chr4_2:53352318-53352337 None:intergenic 35.0%
TTGCTTGAATAGAGTCCAAA+GGG + chr4_2:53352322-53352341 Msa0606730:five_prime_UTR 35.0%
!! TTTTGTTTGGAAATGGTGGT+TGG + chr4_2:53352423-53352442 Msa0606730:five_prime_UTR 35.0%
!!! TGGTGCTGTTTTTGGATTAT+AGG + chr4_2:53352443-53352462 Msa0606730:five_prime_UTR 35.0%
GAAAAGGTGATAAAAGATGG+AGG + chr4_2:53352486-53352505 Msa0606730:exon 35.0%
CATGCAATATCATTTCAGCA+CGG + chr4_2:53352562-53352581 Msa0606730:CDS 35.0%
GAATAATAGCATGTCAGAGA+TGG + chr4_2:53352591-53352610 Msa0606730:CDS 35.0%
! GTCCCAATGGGTAATTATTT+TGG + chr4_2:53352613-53352632 Msa0606730:CDS 35.0%
! TTTGGGTTTAGTAGTTCTTC+TGG + chr4_2:53352631-53352650 Msa0606730:CDS 35.0%
TTGGGTTTAGTAGTTCTTCT+GGG + chr4_2:53352632-53352651 Msa0606730:CDS 35.0%
AACAACCATGTTGTAAGTCA+AGG + chr4_2:53352691-53352710 Msa0606730:CDS 35.0%
!! TTCTTGTTGATTCAGTTCCA+GGG + chr4_2:53352749-53352768 Msa0606730:CDS 35.0%
TCTTGATGAACAGTACAGAT+TGG + chr4_2:53352807-53352826 Msa0606730:CDS 35.0%
! GGAGGTAAAATTGATTTCAG+AGG - chr4_2:53353251-53353270 None:intergenic 35.0%
! ATGTTTGGTTCCACTTTCTA+AGG - chr4_2:53353272-53353291 None:intergenic 35.0%
ACAGAAAATAAGTTGCCATG+TGG - chr4_2:53353395-53353414 None:intergenic 35.0%
TAGTCCACAGATAAAAAGAC+AGG - chr4_2:53353509-53353528 None:intergenic 35.0%
GAATTGATTGCAAAACAAGG+TGG - chr4_2:53353555-53353574 None:intergenic 35.0%
TGGGAATTGATTGCAAAACA+AGG - chr4_2:53353558-53353577 None:intergenic 35.0%
GGTAGGTAGTATTCTTAAGT+GGG - chr4_2:53353577-53353596 None:intergenic 35.0%
TGGTAGGTAGTATTCTTAAG+TGG - chr4_2:53353578-53353597 None:intergenic 35.0%
CTTCATGATACTTGGTTCAT+TGG - chr4_2:53353811-53353830 None:intergenic 35.0%
ACATCGGGAAAATTGTTGAA+AGG - chr4_2:53353918-53353937 None:intergenic 35.0%
AATTTGTACTGGACTCAAAG+TGG - chr4_2:53354055-53354074 None:intergenic 35.0%
ATGGTGATATCAGTGGTTAA+AGG + chr4_2:53354225-53354244 Msa0606730:intron 35.0%
!! CTTCATTTTTCTGCAATTGC+TGG - chr4_2:53354289-53354308 None:intergenic 35.0%
AAGCTGATGGAACTTTCAAT+TGG + chr4_2:53354315-53354334 Msa0606730:intron 35.0%
AGCTGATGGAACTTTCAATT+GGG + chr4_2:53354316-53354335 Msa0606730:intron 35.0%
! CTTTCAATTGGGCTAGAATA+TGG + chr4_2:53354327-53354346 Msa0606730:intron 35.0%
AAACCAGATGAACACAGTTT+GGG + chr4_2:53354628-53354647 Msa0606730:CDS 35.0%
!! CTCCTCCTAATGTTTTAAGT+TGG + chr4_2:53354768-53354787 Msa0606730:intron 35.0%
TATGCTTGACTATCTTGTCA+AGG + chr4_2:53354963-53354982 Msa0606730:intron 35.0%
CTTATGTTGCATCCCATAAA+TGG + chr4_2:53355027-53355046 Msa0606730:intron 35.0%
CAAAACTGGAATCCCATTTA+TGG - chr4_2:53355043-53355062 None:intergenic 35.0%
!! GAAGCATGACTTTAGAATAC+TGG - chr4_2:53355114-53355133 None:intergenic 35.0%
!! TTCTAAAGTCATGCTTCTTC+AGG + chr4_2:53355117-53355136 Msa0606730:intron 35.0%
AGCACAGTCAAATTTGCATT+CGG + chr4_2:53355159-53355178 Msa0606730:CDS 35.0%
TCAAGCTCTCATTATGTTTG+CGG + chr4_2:53355297-53355316 Msa0606730:intron 35.0%
TGTTTGCGGCTACATTATTT+CGG + chr4_2:53355311-53355330 Msa0606730:intron 35.0%
TGTGTATGTTCAGGAATTTG+TGG + chr4_2:53355461-53355480 Msa0606730:intron 35.0%
GTGTATGTTCAGGAATTTGT+GGG + chr4_2:53355462-53355481 Msa0606730:intron 35.0%
TACCAATTTATCGACGTACA+AGG + chr4_2:53355535-53355554 Msa0606730:CDS 35.0%
ATCCACTAGACAATCTATAG+AGG - chr4_2:53355707-53355726 None:intergenic 35.0%
! CACATTGGTTATCACATTAC+TGG + chr4_2:53355791-53355810 Msa0606730:intron 35.0%
TTATCACATTACTGGACTCA+TGG + chr4_2:53355799-53355818 Msa0606730:intron 35.0%
TCCCATATCAGTAGTTAACT+AGG + chr4_2:53355963-53355982 Msa0606730:intron 35.0%
TTCCATTCTAAACGAGTATG+TGG + chr4_2:53356172-53356191 Msa0606730:intron 35.0%
ATCCACATACTCGTTTAGAA+TGG - chr4_2:53356177-53356196 None:intergenic 35.0%
CACACACAAAACAAAACAGA+TGG - chr4_2:53356436-53356455 None:intergenic 35.0%
ACTTATTAGGAAGGATAGAG+AGG - chr4_2:53356587-53356606 None:intergenic 35.0%
! TTCAAGTGCACCCATATTTT+TGG + chr4_2:53356639-53356658 Msa0606730:intron 35.0%
TCTCATGCAGCCAAAAATAT+GGG - chr4_2:53356652-53356671 None:intergenic 35.0%
ATCTCATGCAGCCAAAAATA+TGG - chr4_2:53356653-53356672 None:intergenic 35.0%
!! GATGTACATCGATTTGTGAA+AGG - chr4_2:53356978-53356997 None:intergenic 35.0%
ATGTACATCAATCGTTGTAG+AGG + chr4_2:53356989-53357008 Msa0606730:three_prime_UTR 35.0%
TGTACATCAATCGTTGTAGA+GGG + chr4_2:53356990-53357009 Msa0606730:three_prime_UTR 35.0%
CATTCATCATTTGGAAGTCT+TGG + chr4_2:53357021-53357040 Msa0606730:three_prime_UTR 35.0%
! GTGTTTTACTACCATGTCAT+AGG + chr4_2:53357292-53357311 Msa0606730:three_prime_UTR 35.0%
TACCATGTCATAGGAATAGT+TGG + chr4_2:53357301-53357320 Msa0606730:three_prime_UTR 35.0%
!! TAGTTTGCTGTAAGATGTGA+AGG + chr4_2:53357339-53357358 Msa0606730:three_prime_UTR 35.0%
!! AGTTTGCTGTAAGATGTGAA+GGG + chr4_2:53357340-53357359 Msa0606730:three_prime_UTR 35.0%
CCAATAAGGAAGCAGAGAAA+GGG - chr4_2:53351773-53351792 None:intergenic 40.0%
ACCAATAAGGAAGCAGAGAA+AGG - chr4_2:53351774-53351793 None:intergenic 40.0%
GGGTTACAACTCTACCAATA+AGG - chr4_2:53351787-53351806 None:intergenic 40.0%
CAAAAGAGAGAGACAAGAGA+TGG - chr4_2:53351808-53351827 None:intergenic 40.0%
GTCGTAACAGAACAACAACA+GGG - chr4_2:53352044-53352063 None:intergenic 40.0%
TGTCGTAACAGAACAACAAC+AGG - chr4_2:53352045-53352064 None:intergenic 40.0%
GGGTTCTGCTAATTTCATCT+GGG + chr4_2:53352269-53352288 Msa0606730:five_prime_UTR 40.0%
GTTGCTTGAATAGAGTCCAA+AGG + chr4_2:53352321-53352340 Msa0606730:five_prime_UTR 40.0%
! GTTTAGTAGTTCTTCTGGGA+TGG + chr4_2:53352636-53352655 Msa0606730:CDS 40.0%
!! TCTTCTGGGATGGTATATTC+TGG + chr4_2:53352646-53352665 Msa0606730:CDS 40.0%
AACCATGTTGTAAGTCAAGG+TGG + chr4_2:53352694-53352713 Msa0606730:CDS 40.0%
!! CTTCTTGTTGATTCAGTTCC+AGG + chr4_2:53352748-53352767 Msa0606730:CDS 40.0%
TGAACAGTACAGATTGGAAG+AGG + chr4_2:53352813-53352832 Msa0606730:CDS 40.0%
GAACAGTACAGATTGGAAGA+GGG + chr4_2:53352814-53352833 Msa0606730:CDS 40.0%
! TTTGGTTCCACTTTCTAAGG+AGG - chr4_2:53353269-53353288 None:intergenic 40.0%
! ATTGAAGGCGTGTTTGATGT+TGG - chr4_2:53353339-53353358 None:intergenic 40.0%
AGGGTTTACATTTGTCCACA+TGG + chr4_2:53353377-53353396 Msa0606730:intron 40.0%
CCACAGATAAAAAGACAGGT+TGG - chr4_2:53353505-53353524 None:intergenic 40.0%
! CCAACCTGTCTTTTTATCTG+TGG + chr4_2:53353502-53353521 Msa0606730:intron 40.0%
!! ACATCGCGAACAGTTTTATC+AGG - chr4_2:53353858-53353877 None:intergenic 40.0%
GATATCAGTGGTTAAAGGCA+AGG + chr4_2:53354230-53354249 Msa0606730:intron 40.0%
! GTGGTTAAAGGCAAGGTTTT+AGG + chr4_2:53354237-53354256 Msa0606730:intron 40.0%
! ATTGGGCTAGAATATGGTTG+TGG + chr4_2:53354333-53354352 Msa0606730:intron 40.0%
TTACAAGTTGTGATCTGCAG+CGG - chr4_2:53354368-53354387 None:intergenic 40.0%
AAAGGCAAGGAAGGTTATCT+TGG - chr4_2:53354447-53354466 None:intergenic 40.0%
TAAATGGGGGAAAAAAGGCA+AGG - chr4_2:53354460-53354479 None:intergenic 40.0%
CTTCGCTTTCTCTGCAAAAA+TGG - chr4_2:53354607-53354626 None:intergenic 40.0%
! CATTTTTGCAGAGAAAGCGA+AGG + chr4_2:53354605-53354624 Msa0606730:intron 40.0%
GAAACCAGATGAACACAGTT+TGG + chr4_2:53354627-53354646 Msa0606730:CDS 40.0%
TTTCCCAAACTGTGTTCATC+TGG - chr4_2:53354634-53354653 None:intergenic 40.0%
! GTGTTTGTTGAAGAGTTGTC+TGG + chr4_2:53354723-53354742 Msa0606730:intron 40.0%
GCGTTATGGAACAAAGTCAA+CGG + chr4_2:53355221-53355240 Msa0606730:CDS 40.0%
AGTCAACGGACACTATATGA+TGG + chr4_2:53355235-53355254 Msa0606730:CDS 40.0%
!!! AAGTGCGTCGTTTTTGTAAG+TGG + chr4_2:53355411-53355430 Msa0606730:intron 40.0%
CACCTTGTACGTCGATAAAT+TGG - chr4_2:53355540-53355559 None:intergenic 40.0%
CACCTCTATAGATTGTCTAG+TGG + chr4_2:53355702-53355721 Msa0606730:intron 40.0%
GTTCTTTGATGAACAGTTGC+AGG + chr4_2:53356109-53356128 Msa0606730:intron 40.0%
TCTTGCAAGATCCTCGTTAA+TGG - chr4_2:53356324-53356343 None:intergenic 40.0%
AGCACTTTGCATGCTTGAAT+TGG - chr4_2:53356939-53356958 None:intergenic 40.0%
GTACATCAATCGTTGTAGAG+GGG + chr4_2:53356991-53357010 Msa0606730:three_prime_UTR 40.0%
GGATGGCATCATTCATCATT+TGG + chr4_2:53357012-53357031 Msa0606730:three_prime_UTR 40.0%
!! TTTGGTGCTACATGCAATTG+AGG + chr4_2:53357054-53357073 Msa0606730:three_prime_UTR 40.0%
CTCCAACTATTCCTATGACA+TGG - chr4_2:53357306-53357325 None:intergenic 40.0%
GGAAGCAGAGAAAGGGAAAA+AGG - chr4_2:53351766-53351785 None:intergenic 45.0%
CCCTTTCTCTGCTTCCTTAT+TGG + chr4_2:53351770-53351789 Msa0606730:five_prime_UTR 45.0%
ACACTCTCAGCTCAACAACT+TGG + chr4_2:53351967-53351986 Msa0606730:five_prime_UTR 45.0%
TCTCAGCTCAACAACTTGGT+CGG + chr4_2:53351971-53351990 Msa0606730:five_prime_UTR 45.0%
GGGGTTCTGCTAATTTCATC+TGG + chr4_2:53352268-53352287 Msa0606730:five_prime_UTR 45.0%
!!! ATGGTGGTTGGTGCTGTTTT+TGG + chr4_2:53352435-53352454 Msa0606730:five_prime_UTR 45.0%
ATGTCAGAGATGGTCCCAAT+GGG + chr4_2:53352601-53352620 Msa0606730:CDS 45.0%
CACCACCTTGACTTACAACA+TGG - chr4_2:53352699-53352718 None:intergenic 45.0%
TGATGTTGGCACAACACATG+TGG - chr4_2:53353325-53353344 None:intergenic 45.0%
! ACGCCTTCAATCAGAAGTGT+TGG + chr4_2:53353348-53353367 Msa0606730:intron 45.0%
GCACCAACACTTCTGATTGA+AGG - chr4_2:53353354-53353373 None:intergenic 45.0%
!! ATCAGAAGTGTTGGTGCTAC+AGG + chr4_2:53353357-53353376 Msa0606730:intron 45.0%
!! TCAGAAGTGTTGGTGCTACA+GGG + chr4_2:53353358-53353377 Msa0606730:intron 45.0%
!! ATGTTGCTTTGAGGTGTAGG+TGG + chr4_2:53353874-53353893 Msa0606730:CDS 45.0%
GCTTCTTCAGGATAAGTCGT+TGG + chr4_2:53355129-53355148 Msa0606730:intron 45.0%
AGAATATGACCCCATGCTTG+GGG - chr4_2:53355191-53355210 None:intergenic 45.0%
GAGAATATGACCCCATGCTT+GGG - chr4_2:53355192-53355211 None:intergenic 45.0%
TGAGAATATGACCCCATGCT+TGG - chr4_2:53355193-53355212 None:intergenic 45.0%
TTCTCACATGTCACGCGTTA+TGG + chr4_2:53355207-53355226 Msa0606730:CDS 45.0%
TGCTCCATGAGTTGCTTCAT+GGG - chr4_2:53355488-53355507 None:intergenic 45.0%
AGATCCTCGTTAATGGCAAC+AGG - chr4_2:53356317-53356336 None:intergenic 45.0%
TCACTGTCGAGAAAGATGCT+CGG - chr4_2:53356741-53356760 None:intergenic 45.0%
ATCAATCGTTGTAGAGGGGA+TGG + chr4_2:53356995-53357014 Msa0606730:three_prime_UTR 45.0%
! AGTCTTGGCTGCAACTGTTT+TGG + chr4_2:53357036-53357055 Msa0606730:three_prime_UTR 45.0%
CTACATGCAATTGAGGAGTC+AGG + chr4_2:53357061-53357080 Msa0606730:three_prime_UTR 45.0%
!! TAAAATTAAGAAATATAAAA+AGG - chr4_2:53351719-53351738 None:intergenic 5.0%
ATGGAGGCAGAGTCAAACAG+AGG + chr4_2:53352502-53352521 Msa0606730:CDS 50.0%
TGGAGGCAGAGTCAAACAGA+GGG + chr4_2:53352503-53352522 Msa0606730:CDS 50.0%
CATGTCAGAGATGGTCCCAA+TGG + chr4_2:53352600-53352619 Msa0606730:CDS 50.0%
GTTGTAAGTCAAGGTGGTGC+TGG + chr4_2:53352700-53352719 Msa0606730:CDS 50.0%
CAGGGCTTAAGCATGACACA+GGG + chr4_2:53352767-53352786 Msa0606730:CDS 50.0%
GCTTAAGCATGACACAGGGT+TGG + chr4_2:53352771-53352790 Msa0606730:CDS 50.0%
!! ACACAGGGTTGGCTGTTGAA+TGG + chr4_2:53352782-53352801 Msa0606730:CDS 50.0%
CGTTCGTCTCAGCACTTCAT+AGG - chr4_2:53352913-53352932 None:intergenic 50.0%
GTCTGTCTGCAAGTCTGATC+AGG + chr4_2:53353469-53353488 Msa0606730:intron 50.0%
!! CTGTTCGCGATGTTGCTTTG+AGG + chr4_2:53353865-53353884 Msa0606730:CDS 50.0%
!! GCGATGTTGCTTTGAGGTGT+AGG + chr4_2:53353871-53353890 Msa0606730:CDS 50.0%
TGGATTCATGCACACAGCAC+AGG - chr4_2:53353970-53353989 None:intergenic 50.0%
TGGGGGAAAAAAGGCAAGGA+AGG - chr4_2:53354456-53354475 None:intergenic 50.0%
GAATATGACCCCATGCTTGG+GGG - chr4_2:53355190-53355209 None:intergenic 50.0%
CTGCTCCATGAGTTGCTTCA+TGG - chr4_2:53355489-53355508 None:intergenic 50.0%
! TCGACCTCTTTTGCCACACA+AGG + chr4_2:53356138-53356157 Msa0606730:CDS 50.0%
TGTGCCTTGTGTGGCAAAAG+AGG - chr4_2:53356145-53356164 None:intergenic 50.0%
! GGCATTTGGCTCATAATGCC+AGG - chr4_2:53356287-53356306 None:intergenic 50.0%
TTAATGGCAACAGGCAGTGG+CGG - chr4_2:53356308-53356327 None:intergenic 50.0%
TCGTTAATGGCAACAGGCAG+TGG - chr4_2:53356311-53356330 None:intergenic 50.0%
ACTGCCTGTTGCCATTAACG+AGG + chr4_2:53356310-53356329 Msa0606730:CDS 50.0%
! GATAGAGAGGTGTGACAGCA+AGG - chr4_2:53356574-53356593 None:intergenic 50.0%
! GTAAGTCAAGGTGGTGCTGG+TGG + chr4_2:53352703-53352722 Msa0606730:CDS 55.0%
!! GGTGCTGGTGGTAATTCAGC+TGG + chr4_2:53352715-53352734 Msa0606730:CDS 55.0%
CCTGTGTCATGCTTAAGCCC+TGG - chr4_2:53352769-53352788 None:intergenic 55.0%
CCAGGGCTTAAGCATGACAC+AGG + chr4_2:53352766-53352785 Msa0606730:CDS 55.0%
TGGGCCCATGAAGCAACTCA+TGG + chr4_2:53355481-53355500 Msa0606730:CDS 55.0%
TGCAGCATGAGTGAGATGCC+TGG + chr4_2:53356266-53356285 Msa0606730:intron 55.0%
! CGAGAAAGATGCTCGGTGAG+TGG - chr4_2:53356734-53356753 None:intergenic 55.0%
CAACAGGCAGTGGCGGCATT+TGG - chr4_2:53356301-53356320 None:intergenic 60.0%
GGTGAGTGGTGACAGGCTGA+TGG - chr4_2:53356720-53356739 None:intergenic 60.0%
! GATGCTCGGTGAGTGGTGAC+AGG - chr4_2:53356727-53356746 None:intergenic 60.0%
TTCGGCGCTACCCCCAAGCA+TGG + chr4_2:53355177-53355196 Msa0606730:CDS 65.0%
TCGGCGCTACCCCCAAGCAT+GGG + chr4_2:53355178-53355197 Msa0606730:CDS 65.0%
CGGCGCTACCCCCAAGCATG+GGG + chr4_2:53355179-53355198 Msa0606730:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 53351679 53357474 53351679 ID=Msa0606730;Name=Msa0606730
chr4_2 mRNA 53351679 53357474 53351679 ID=Msa0606730-mRNA-1;Parent=Msa0606730;Name=Msa0606730-mRNA-1;_AED=0.22;_eAED=0.22;_QI=621|1|1|1|0.75|0.66|9|529|286
chr4_2 exon 53351679 53352015 53351679 ID=Msa0606730-mRNA-1:exon:13139;Parent=Msa0606730-mRNA-1
chr4_2 exon 53352218 53352845 53352218 ID=Msa0606730-mRNA-1:exon:13140;Parent=Msa0606730-mRNA-1
chr4_2 exon 53353803 53353902 53353803 ID=Msa0606730-mRNA-1:exon:13141;Parent=Msa0606730-mRNA-1
chr4_2 exon 53354616 53354672 53354616 ID=Msa0606730-mRNA-1:exon:13142;Parent=Msa0606730-mRNA-1
chr4_2 exon 53355139 53355256 53355139 ID=Msa0606730-mRNA-1:exon:13143;Parent=Msa0606730-mRNA-1
chr4_2 exon 53355474 53355556 53355474 ID=Msa0606730-mRNA-1:exon:13144;Parent=Msa0606730-mRNA-1
chr4_2 exon 53356125 53356186 53356125 ID=Msa0606730-mRNA-1:exon:13145;Parent=Msa0606730-mRNA-1
chr4_2 exon 53356271 53356367 53356271 ID=Msa0606730-mRNA-1:exon:13146;Parent=Msa0606730-mRNA-1
chr4_2 exon 53356946 53357474 53356946 ID=Msa0606730-mRNA-1:exon:13147;Parent=Msa0606730-mRNA-1
chr4_2 five_prime_UTR 53351679 53352015 53351679 ID=Msa0606730-mRNA-1:five_prime_utr;Parent=Msa0606730-mRNA-1
chr4_2 five_prime_UTR 53352218 53352501 53352218 ID=Msa0606730-mRNA-1:five_prime_utr;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53352502 53352845 53352502 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53353803 53353902 53353803 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53354616 53354672 53354616 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53355139 53355256 53355139 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53355474 53355556 53355474 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53356125 53356186 53356125 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 CDS 53356271 53356367 53356271 ID=Msa0606730-mRNA-1:cds;Parent=Msa0606730-mRNA-1
chr4_2 three_prime_UTR 53356946 53357474 53356946 ID=Msa0606730-mRNA-1:three_prime_utr;Parent=Msa0606730-mRNA-1
Gene Sequence

>Msa0606730

ATGGAGGCAGAGTCAAACAGAGGGTTTCATAATGAAGATATAAATTCATCTATGAGTAGACATGCAATATCATTTCAGCACGGTGCTATGAATAATAGCATGTCAGAGATGGTCCCAATGGGTAATTATTTTGGGTTTAGTAGTTCTTCTGGGATGGTATATTCTGGAAATTCAACTTTCATGAACAACAACAACCATGTTGTAAGTCAAGGTGGTGCTGGTGGTAATTCAGCTGGTTCTTCTTCTCTTCTTGTTGATTCAGTTCCAGGGCTTAAGCATGACACAGGGTTGGCTGTTGAATGGTCTCTTGATGAACAGTACAGATTGGAAGAGGGTCTTGCCAATTATGCCAATGAACCAAGTATCATGAAGTACATCAAAATTGCTGCTGCGTTGCCTGATAAAACTGTTCGCGATGTTGCTTTGAGGTGTAGGTGGTTGACAAGAAAGCGAAGGAAACCAGATGAACACAGTTTGGGAAAGAAGATCAATTACAGAAAAGATAAGTCGTTGGAGTTTGAAGCACAGTCAAATTTGCATTCGGCGCTACCCCCAAGCATGGGGTCATATTCTCACATGTCACGCGTTATGGAACAAAGTCAACGGACACTATATGATGGAATTTGTGGGCCCATGAAGCAACTCATGGAGCAGAATGCTCAAGCTTTTAATCAAATCAATACCAATTTATCGACGTACAAGTTGCAGGACAACATCGACCTCTTTTGCCACACAAGGCACAATATTAATTCCATTCTAAACGACATGAGTGAGATGCCTGGCATTATGAGCCAAATGCCGCCACTGCCTGTTGCCATTAACGAGGATCTTGCAAGAAGCATTTTGCCTAATAGAACTTAG
Protein sequence

>Msa0606730

MEAESNRGFHNEDINSSMSRHAISFQHGAMNNSMSEMVPMGNYFGFSSSSGMVYSGNSTFMNNNNHVVSQGGAGGNSAGSSSLLVDSVPGLKHDTGLAVEWSLDEQYRLEEGLANYANEPSIMKYIKIAAALPDKTVRDVALRCRWLTRKRRKPDEHSLGKKINYRKDKSLEFEAQSNLHSALPPSMGSYSHMSRVMEQSQRTLYDGICGPMKQLMEQNAQAFNQINTNLSTYKLQDNIDLFCHTRHNINSILNDMSEMPGIMSQMPPLPVAINEDLARSILPNRT*