Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606930 | AES89420.2 | 85.020 | 247 | 23 | 1 | 1 | 247 | 1 | 233 | 2.38e-142 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117910 | Msa0606930 | 0.808638 | 2.806408e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606930 | MtrunA17_Chr4g0038061 | 91.903 | 247 | 19 | 1 | 1 | 247 | 1 | 246 | 2.46e-133 | 399 |
| Msa0606930 | MtrunA17_Chr4g0040821 | 75.502 | 249 | 57 | 4 | 1 | 247 | 1 | 247 | 3.92e-102 | 317 |
| Msa0606930 | MtrunA17_Chr4g0038041 | 100.000 | 61 | 0 | 0 | 187 | 247 | 7 | 67 | 5.80e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATCTTTAAATTTC+TGG | 0.073604 | 4_2:+53618907 | None:intergenic |
| GTTGAGGAATTTATAAATTT+TGG | 0.115527 | 4_2:-53618097 | Msa0606930:CDS |
| CTCGGTATTCCATGGATTTC+TGG | 0.186432 | 4_2:+53618886 | None:intergenic |
| TTCCAAAGCGTTGGATCTTT+TGG | 0.213096 | 4_2:+53616180 | None:intergenic |
| GATGATCTTCCTCCTCCTTC+TGG | 0.255549 | 4_2:+53619144 | None:intergenic |
| TGCAAATGGCCGTCATAAAA+TGG | 0.270751 | 4_2:-53617448 | Msa0606930:intron |
| TGTGTACATCATACCTTTCT+TGG | 0.273055 | 4_2:+53618061 | None:intergenic |
| TGATACGAGTCAGGTAAATT+TGG | 0.321774 | 4_2:+53616282 | None:intergenic |
| GGACTTGTCCATGGTGCAAT+TGG | 0.341743 | 4_2:-53616252 | Msa0606930:CDS |
| GACTTGTCCATGGTGCAATT+GGG | 0.352525 | 4_2:-53616251 | Msa0606930:CDS |
| ATAAATTCCTCAACCTCAGC+TGG | 0.392533 | 4_2:+53618106 | None:intergenic |
| TGGGGATCACGAAAATGAAA+TGG | 0.398538 | 4_2:-53616232 | Msa0606930:CDS |
| TTCGTTCGTAACAATGATTC+CGG | 0.401375 | 4_2:-53618942 | Msa0606930:CDS |
| CGGCGACGGTGTAAATCCTT+TGG | 0.404915 | 4_2:-53618967 | Msa0606930:CDS |
| TCGCTGTCTTCTACCGCCCT+TGG | 0.407223 | 4_2:+53619122 | None:intergenic |
| TCTTTATGCAAATCCCTCTC+TGG | 0.414479 | 4_2:-53619197 | Msa0606930:five_prime_UTR |
| CGAAAAGATATCACAGATGT+TGG | 0.427095 | 4_2:-53617490 | Msa0606930:CDS |
| CTCCAAAAGATCCAACGCTT+TGG | 0.429606 | 4_2:-53616182 | Msa0606930:CDS |
| TAGTTACCGGTGAGATTGTA+GGG | 0.443984 | 4_2:+53618836 | None:intergenic |
| TTAGTTACCGGTGAGATTGT+AGG | 0.449175 | 4_2:+53618835 | None:intergenic |
| CTCGAAAATAATTAGTAAAA+CGG | 0.460042 | 4_2:+53619223 | None:intergenic |
| GGGGATCACGAAAATGAAAT+GGG | 0.467202 | 4_2:-53616231 | Msa0606930:CDS |
| TGGTTCATCACTCAGTAGAA+TGG | 0.480829 | 4_2:-53619177 | Msa0606930:exon |
| AGACCTCTTCTAAGAAGGCT+AGG | 0.485774 | 4_2:-53618153 | Msa0606930:CDS |
| GAAGATGATCAATTCATCTT+CGG | 0.486101 | 4_2:-53618987 | Msa0606930:CDS |
| CCAAGGGTGTGATACGAGTC+AGG | 0.486679 | 4_2:+53616273 | None:intergenic |
| ACCATACCCTGTGTCTTCAT+TGG | 0.487379 | 4_2:+53619094 | None:intergenic |
| GCCTACGTTCACTATGCAAA+TGG | 0.490448 | 4_2:-53617462 | Msa0606930:CDS |
| CCTGACTCGTATCACACCCT+TGG | 0.497427 | 4_2:-53616273 | Msa0606930:CDS |
| CACACCCTTGGACTTGTCCA+TGG | 0.519632 | 4_2:-53616261 | Msa0606930:CDS |
| TTCCCTAGCCTTCTTAGAAG+AGG | 0.524077 | 4_2:+53618150 | None:intergenic |
| GAAAAGATATCACAGATGTT+GGG | 0.529261 | 4_2:-53617489 | Msa0606930:CDS |
| GGTAAACCCAGCTGAGGTTG+AGG | 0.531045 | 4_2:-53618113 | Msa0606930:CDS |
| ATCGAGAGCTCGGTATTCCA+TGG | 0.544191 | 4_2:+53618878 | None:intergenic |
| TTTGCATGAAGTTGTCAGGC+TGG | 0.554814 | 4_2:-53616307 | Msa0606930:CDS |
| GCCAATGAAGACACAGGGTA+TGG | 0.556221 | 4_2:-53619095 | Msa0606930:CDS |
| TTGCACCATGGACAAGTCCA+AGG | 0.558983 | 4_2:+53616256 | None:intergenic |
| TAAATTCCTCAACCTCAGCT+GGG | 0.559401 | 4_2:+53618107 | None:intergenic |
| GACCTCTTCTAAGAAGGCTA+GGG | 0.560807 | 4_2:-53618152 | Msa0606930:CDS |
| ACTTGTCCATGGTGCAATTG+GGG | 0.566458 | 4_2:-53616250 | Msa0606930:CDS |
| TGAAGAGACCTCTTCTAAGA+AGG | 0.567023 | 4_2:-53618158 | Msa0606930:CDS |
| AATGGAAGAGATTAACCAGA+AGG | 0.576659 | 4_2:-53619159 | Msa0606930:CDS |
| TTTGGAAGACGCTTTATGTG+TGG | 0.586815 | 4_2:-53616164 | Msa0606930:CDS |
| GCTTTCGGTTATCGAGAGCT+CGG | 0.586940 | 4_2:+53618868 | None:intergenic |
| AGGAGGAGGAAGATCATCCA+AGG | 0.587252 | 4_2:-53619139 | Msa0606930:CDS |
| TAAAGCGTCTTCCAAAGCGT+TGG | 0.591231 | 4_2:+53616171 | None:intergenic |
| AGAAGAAGAAGAAAACGATA+CGG | 0.591701 | 4_2:-53619015 | Msa0606930:CDS |
| AACTACCCCTACAATCTCAC+CGG | 0.596811 | 4_2:-53618842 | Msa0606930:intron |
| AGAGGGCAAGAGACCAAGAA+AGG | 0.599590 | 4_2:-53618074 | Msa0606930:intron |
| AGATTACCACCAGAAATCCA+TGG | 0.600997 | 4_2:-53618895 | Msa0606930:CDS |
| CGTGATCCCCAATTGCACCA+TGG | 0.601775 | 4_2:+53616244 | None:intergenic |
| AGAGATTAACCAGAAGGAGG+AGG | 0.605787 | 4_2:-53619153 | Msa0606930:CDS |
| GATCAATTCATCTTCGGCGA+CGG | 0.607021 | 4_2:-53618981 | Msa0606930:CDS |
| TTGTTACGAACGAAGTCCAA+AGG | 0.617644 | 4_2:+53618951 | None:intergenic |
| GACAATGCCAATGAAGACAC+AGG | 0.618838 | 4_2:-53619101 | Msa0606930:CDS |
| GGTATTCCATGGATTTCTGG+TGG | 0.631841 | 4_2:+53618889 | None:intergenic |
| GGAAGAGATTAACCAGAAGG+AGG | 0.636708 | 4_2:-53619156 | Msa0606930:CDS |
| TGCACCATGGACAAGTCCAA+GGG | 0.636862 | 4_2:+53616257 | None:intergenic |
| TGAAGACACAGGGTATGGTA+CGG | 0.639174 | 4_2:-53619090 | Msa0606930:CDS |
| ACTGAGTGATGAACCAGAGA+GGG | 0.650961 | 4_2:+53619184 | None:intergenic |
| AGAAGAAGAAAACGATACGG+TGG | 0.651921 | 4_2:-53619012 | Msa0606930:CDS |
| GGGTATGGTACGGAAGAGAA+CGG | 0.656026 | 4_2:-53619080 | Msa0606930:CDS |
| TTTCTGGTACAAATTAACAC+CGG | 0.660458 | 4_2:+53618923 | None:intergenic |
| GGAGGAGGAAGATCATCCAA+GGG | 0.676624 | 4_2:-53619138 | Msa0606930:CDS |
| AGTTACCGGTGAGATTGTAG+GGG | 0.692832 | 4_2:+53618837 | None:intergenic |
| GGAGGAAGATCATCCAAGGG+CGG | 0.693061 | 4_2:-53619135 | Msa0606930:CDS |
| TACTGAGTGATGAACCAGAG+AGG | 0.694119 | 4_2:+53619183 | None:intergenic |
| ACAATGCCAATGAAGACACA+GGG | 0.704693 | 4_2:-53619100 | Msa0606930:CDS |
| GCCATTTGCATAGTGAACGT+AGG | 0.728917 | 4_2:+53617461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGGCTATATTATAATTTT+TGG | - | chr4_2:53617463-53617482 | Msa0606930:CDS | 15.0% |
| !!! | AACTTGAATTTTGATATAAT+CGG | + | chr4_2:53618010-53618029 | None:intergenic | 15.0% |
| !!! | GTTTTACTAATTATTTTCGA+GGG | - | chr4_2:53616156-53616175 | Msa0606930:CDS | 20.0% |
| !!! | TGTCTTTTCTAATTTCTATA+TGG | - | chr4_2:53616571-53616590 | Msa0606930:intron | 20.0% |
| !! | GTCATTAAAAAAAAAGCAAT+TGG | - | chr4_2:53617026-53617045 | Msa0606930:intron | 20.0% |
| !!! | GTTGAGGAATTTATAAATTT+TGG | - | chr4_2:53617280-53617299 | Msa0606930:intron | 20.0% |
| !!! | GAATTTATAAATTTTGGAGA+GGG | - | chr4_2:53617286-53617305 | Msa0606930:intron | 20.0% |
| !!! | TTCATTAATTCCTTTAAGAT+AGG | - | chr4_2:53617390-53617409 | Msa0606930:intron | 20.0% |
| !!! | GAGAATTTTCGTTTTTTATA+TGG | - | chr4_2:53617541-53617560 | Msa0606930:CDS | 20.0% |
| !! | GAATATAAACAATATTGGAA+AGG | + | chr4_2:53617814-53617833 | None:intergenic | 20.0% |
| !!! | TTCTGGAATATAAACAATAT+TGG | + | chr4_2:53617819-53617838 | None:intergenic | 20.0% |
| !!! | AATAATGTACCATTTTATGA+CGG | + | chr4_2:53617941-53617960 | None:intergenic | 20.0% |
| !! | TGACAATGTATTTATTTAAC+TGG | - | chr4_2:53618214-53618233 | Msa0606930:intron | 20.0% |
| !! | GTATTTATTTAACTGGAAAA+TGG | - | chr4_2:53618221-53618240 | Msa0606930:intron | 20.0% |
| !! | ACATCATTAATAATTCTGAA+TGG | - | chr4_2:53618436-53618455 | Msa0606930:intron | 20.0% |
| !! | AGAGTTAAAGTTAGTTAATA+AGG | + | chr4_2:53618511-53618530 | None:intergenic | 20.0% |
| !!! | ACCATCTTATAATTTTTGTT+TGG | + | chr4_2:53618666-53618685 | None:intergenic | 20.0% |
| !! | CGTTTTACTAATTATTTTCG+AGG | - | chr4_2:53616155-53616174 | Msa0606930:CDS | 25.0% |
| !! | TTTTGCATGAATGATAAACT+TGG | - | chr4_2:53616679-53616698 | Msa0606930:intron | 25.0% |
| ! | AAAACTTGTAGTAGAAAAGA+TGG | - | chr4_2:53616750-53616769 | Msa0606930:intron | 25.0% |
| ! | AAAACTATAAGAGAAACTCT+TGG | - | chr4_2:53616883-53616902 | Msa0606930:intron | 25.0% |
| !!! | GGAATTTATAAATTTTGGAG+AGG | - | chr4_2:53617285-53617304 | Msa0606930:intron | 25.0% |
| ! | TTACAATCTACCTATCTTAA+AGG | + | chr4_2:53617403-53617422 | None:intergenic | 25.0% |
| !!! | ATTTTCGTTTTTTATATGGC+AGG | - | chr4_2:53617545-53617564 | Msa0606930:intron | 25.0% |
| ! | GCAGAAAATTTATGAAAACA+AGG | + | chr4_2:53617607-53617626 | None:intergenic | 25.0% |
| ! | CCAAAAGCTTACAAAAAAAA+AGG | + | chr4_2:53617665-53617684 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTGTAAGCTTT+TGG | - | chr4_2:53617662-53617681 | Msa0606930:intron | 25.0% |
| ! | ACATTCTCAATTACATGTTA+TGG | - | chr4_2:53617750-53617769 | Msa0606930:intron | 25.0% |
| ! | TATTGTTTATATTCCAGAAG+AGG | - | chr4_2:53617820-53617839 | Msa0606930:intron | 25.0% |
| !!! | GCATTCAAAAAGTTTTTCAA+GGG | + | chr4_2:53618360-53618379 | None:intergenic | 25.0% |
| ! | CCAATTTATAAACATGTTTC+AGG | + | chr4_2:53618598-53618617 | None:intergenic | 25.0% |
| ! | CCTGAAACATGTTTATAAAT+TGG | - | chr4_2:53618595-53618614 | Msa0606930:intron | 25.0% |
| ! | GCCAAACAAAAATTATAAGA+TGG | - | chr4_2:53618662-53618681 | Msa0606930:intron | 25.0% |
| ! | TACTCATAGAAATTTGTGTT+GGG | + | chr4_2:53618845-53618864 | None:intergenic | 25.0% |
| !!! | TATGAGTACCCATTTTTATT+TGG | - | chr4_2:53618857-53618876 | Msa0606930:CDS | 25.0% |
| ! | AAGTTGAGCCAAATAAAAAT+GGG | + | chr4_2:53618868-53618887 | None:intergenic | 25.0% |
| ! | AAAGTTGAGCCAAATAAAAA+TGG | + | chr4_2:53618869-53618888 | None:intergenic | 25.0% |
| ! | TTAGTTATACAATGCTATGT+TGG | - | chr4_2:53619025-53619044 | Msa0606930:CDS | 25.0% |
| AGAAGAAGAAGAAAACGATA+CGG | - | chr4_2:53616362-53616381 | Msa0606930:intron | 30.0% | |
| GAAGATGATCAATTCATCTT+CGG | - | chr4_2:53616390-53616409 | Msa0606930:intron | 30.0% | |
| ! | TTTCTGGTACAAATTAACAC+CGG | + | chr4_2:53616457-53616476 | None:intergenic | 30.0% |
| GGTGGTAATCTTTAAATTTC+TGG | + | chr4_2:53616473-53616492 | None:intergenic | 30.0% | |
| AAGACAAAGAAGTTAGTTAC+CGG | + | chr4_2:53616557-53616576 | None:intergenic | 30.0% | |
| TTTCTCAGTAATTACATGTG+CGG | + | chr4_2:53616733-53616752 | None:intergenic | 30.0% | |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | - | chr4_2:53616761-53616780 | Msa0606930:intron | 30.0% |
| AGTTAAGAAAGTAGATCAGA+TGG | - | chr4_2:53616819-53616838 | Msa0606930:intron | 30.0% | |
| AGATTTAGAGATTAGTGAGT+TGG | - | chr4_2:53617052-53617071 | Msa0606930:intron | 30.0% | |
| ! | CTAGGGAAGATGATATTTTT+GGG | - | chr4_2:53617242-53617261 | Msa0606930:intron | 30.0% |
| !! | TAGGGAAGATGATATTTTTG+GGG | - | chr4_2:53617243-53617262 | Msa0606930:intron | 30.0% |
| !!! | TGTAAGTTTTAGACTAGCAA+TGG | - | chr4_2:53617418-53617437 | Msa0606930:intron | 30.0% |
| ! | TTTTAGACTAGCAATGGAAT+GGG | - | chr4_2:53617424-53617443 | Msa0606930:intron | 30.0% |
| ! | AAAATTCTCTAGAAGAAGCT+AGG | + | chr4_2:53617530-53617549 | None:intergenic | 30.0% |
| GGTGAATGTAGTTATGATAA+AGG | + | chr4_2:53617793-53617812 | None:intergenic | 30.0% | |
| AAAAAAAGAGGTAGGCAAAA+AGG | - | chr4_2:53617846-53617865 | Msa0606930:intron | 30.0% | |
| GAAAAGATATCACAGATGTT+GGG | - | chr4_2:53617888-53617907 | Msa0606930:intron | 30.0% | |
| ATGTGATCTAGCAAATCTAT+AGG | - | chr4_2:53617961-53617980 | Msa0606930:intron | 30.0% | |
| ! | TCTAGCAAATCTATAGGTTT+TGG | - | chr4_2:53617967-53617986 | Msa0606930:intron | 30.0% |
| !! | AAAAAGCATTTCAGTAGAGA+AGG | + | chr4_2:53618149-53618168 | None:intergenic | 30.0% |
| ATTGTCACCTTCAAATTTCA+GGG | + | chr4_2:53618201-53618220 | None:intergenic | 30.0% | |
| CATGAAAACAGAAAATAGAG+AGG | - | chr4_2:53618265-53618284 | Msa0606930:intron | 30.0% | |
| !!! | AAGTTTTTCAAGGGTTGTTT+AGG | + | chr4_2:53618351-53618370 | None:intergenic | 30.0% |
| ! | GGCATTCAAAAAGTTTTTCA+AGG | + | chr4_2:53618361-53618380 | None:intergenic | 30.0% |
| ! | ACATTGATTGTCATGTGAAT+GGG | + | chr4_2:53618415-53618434 | None:intergenic | 30.0% |
| ! | CACTAATTTTCATGTGAATG+GGG | + | chr4_2:53618485-53618504 | None:intergenic | 30.0% |
| ! | CCACTAATTTTCATGTGAAT+GGG | + | chr4_2:53618486-53618505 | None:intergenic | 30.0% |
| !! | TCACTCGTACATACTTTTTA+AGG | + | chr4_2:53618791-53618810 | None:intergenic | 30.0% |
| GTACTCATAGAAATTTGTGT+TGG | + | chr4_2:53618846-53618865 | None:intergenic | 30.0% | |
| AATGGAAGAGATTAACCAGA+AGG | - | chr4_2:53616218-53616237 | Msa0606930:CDS | 35.0% | |
| TTCGTTCGTAACAATGATTC+CGG | - | chr4_2:53616435-53616454 | Msa0606930:intron | 35.0% | |
| ACTTGTAGTAGAAAAGATGG+TGG | - | chr4_2:53616753-53616772 | Msa0606930:intron | 35.0% | |
| TAAGAAAGTAGATCAGATGG+AGG | - | chr4_2:53616822-53616841 | Msa0606930:intron | 35.0% | |
| ACTATAAGAGAAACTCTTGG+TGG | - | chr4_2:53616886-53616905 | Msa0606930:intron | 35.0% | |
| TAAGGGATTAGAGGAGTTAA+GGG | - | chr4_2:53616941-53616960 | Msa0606930:intron | 35.0% | |
| ! | TAGTGAGTTGGATCCAAATA+CGG | - | chr4_2:53617064-53617083 | Msa0606930:intron | 35.0% |
| GTTCTATTGTAGACCGTATT+TGG | + | chr4_2:53617080-53617099 | None:intergenic | 35.0% | |
| CGGTCTACAATAGAACATTA+TGG | - | chr4_2:53617084-53617103 | Msa0606930:intron | 35.0% | |
| AAACTTTATCCCACTAAGTG+GGG | + | chr4_2:53617133-53617152 | None:intergenic | 35.0% | |
| CAAACTTTATCCCACTAAGT+GGG | + | chr4_2:53617134-53617153 | None:intergenic | 35.0% | |
| ACAAACTTTATCCCACTAAG+TGG | + | chr4_2:53617135-53617154 | None:intergenic | 35.0% | |
| ! | GCTAGGGAAGATGATATTTT+TGG | - | chr4_2:53617241-53617260 | Msa0606930:intron | 35.0% |
| TGTGTACATCATACCTTTCT+TGG | + | chr4_2:53617319-53617338 | None:intergenic | 35.0% | |
| !! | GTTTTAGACTAGCAATGGAA+TGG | - | chr4_2:53617423-53617442 | Msa0606930:intron | 35.0% |
| TAGGATTGGATGACTGTAAT+TGG | + | chr4_2:53617511-53617530 | None:intergenic | 35.0% | |
| AATATACAATCAGCAAGCGA+AGG | + | chr4_2:53617689-53617708 | None:intergenic | 35.0% | |
| !!! | CTCTTTTTTTTGACCTCTTC+TGG | + | chr4_2:53617836-53617855 | None:intergenic | 35.0% |
| CAGAAGAGGTCAAAAAAAAG+AGG | - | chr4_2:53617834-53617853 | Msa0606930:intron | 35.0% | |
| AGAGGTCAAAAAAAAGAGGT+AGG | - | chr4_2:53617838-53617857 | Msa0606930:intron | 35.0% | |
| CGAAAAGATATCACAGATGT+TGG | - | chr4_2:53617887-53617906 | Msa0606930:intron | 35.0% | |
| GTTGAAGCAAGATCAAAAGT+GGG | + | chr4_2:53618061-53618080 | None:intergenic | 35.0% | |
| TGTTGAAGCAAGATCAAAAG+TGG | + | chr4_2:53618062-53618081 | None:intergenic | 35.0% | |
| GAAACTTTGTCTCTTCGAAA+AGG | + | chr4_2:53618094-53618113 | None:intergenic | 35.0% | |
| ! | TTGTAGTTGTGTGTTGTTGT+TGG | + | chr4_2:53618119-53618138 | None:intergenic | 35.0% |
| GATAGAACCCTGAAATTTGA+AGG | - | chr4_2:53618191-53618210 | Msa0606930:intron | 35.0% | |
| CATTGTCACCTTCAAATTTC+AGG | + | chr4_2:53618202-53618221 | None:intergenic | 35.0% | |
| TGAATGGGGATATAAAGGAA+AGG | + | chr4_2:53618400-53618419 | None:intergenic | 35.0% | |
| TCATGTGAATGGGGATATAA+AGG | + | chr4_2:53618405-53618424 | None:intergenic | 35.0% | |
| ! | CATTGATTGTCATGTGAATG+GGG | + | chr4_2:53618414-53618433 | None:intergenic | 35.0% |
| ! | GACATTGATTGTCATGTGAA+TGG | + | chr4_2:53618416-53618435 | None:intergenic | 35.0% |
| CCCATTCACATGAAAATTAG+TGG | - | chr4_2:53618483-53618502 | Msa0606930:intron | 35.0% | |
| ! | GCCACTAATTTTCATGTGAA+TGG | + | chr4_2:53618487-53618506 | None:intergenic | 35.0% |
| !!! | ACGTTACAAGATGGTTTTGT+AGG | - | chr4_2:53618629-53618648 | Msa0606930:intron | 35.0% |
| !!! | CGTTACAAGATGGTTTTGTA+GGG | - | chr4_2:53618630-53618649 | Msa0606930:intron | 35.0% |
| ! | TGTGCCTATCTAAAATCCAT+CGG | - | chr4_2:53618689-53618708 | Msa0606930:intron | 35.0% |
| GGATAAATCACATCTGTTCA+GGG | + | chr4_2:53618770-53618789 | None:intergenic | 35.0% | |
| AGGATAAATCACATCTGTTC+AGG | + | chr4_2:53618771-53618790 | None:intergenic | 35.0% | |
| !!! | TGCTATGTTGGTTTTTTTGC+AGG | - | chr4_2:53619037-53619056 | Msa0606930:CDS | 35.0% |
| TGATACGAGTCAGGTAAATT+TGG | + | chr4_2:53619098-53619117 | None:intergenic | 35.0% | |
| TCTTTATGCAAATCCCTCTC+TGG | - | chr4_2:53616180-53616199 | Msa0606930:CDS | 40.0% | |
| TGGTTCATCACTCAGTAGAA+TGG | - | chr4_2:53616200-53616219 | Msa0606930:CDS | 40.0% | |
| ACAATGCCAATGAAGACACA+GGG | - | chr4_2:53616277-53616296 | Msa0606930:CDS | 40.0% | |
| AGAAGAAGAAAACGATACGG+TGG | - | chr4_2:53616365-53616384 | Msa0606930:intron | 40.0% | |
| TTGTTACGAACGAAGTCCAA+AGG | + | chr4_2:53616429-53616448 | None:intergenic | 40.0% | |
| AGATTACCACCAGAAATCCA+TGG | - | chr4_2:53616482-53616501 | Msa0606930:intron | 40.0% | |
| TAGTTACCGGTGAGATTGTA+GGG | + | chr4_2:53616544-53616563 | None:intergenic | 40.0% | |
| TTAGTTACCGGTGAGATTGT+AGG | + | chr4_2:53616545-53616564 | None:intergenic | 40.0% | |
| !! | AGATGGTGGAAAATAGGCTT+AGG | - | chr4_2:53616767-53616786 | Msa0606930:intron | 40.0% |
| TTAGGTGGTTTCAGCATGTA+TGG | - | chr4_2:53616785-53616804 | Msa0606930:intron | 40.0% | |
| ATAAGAGAAACTCTTGGTGG+TGG | - | chr4_2:53616889-53616908 | Msa0606930:intron | 40.0% | |
| ! | TAAGAGAAACTCTTGGTGGT+GGG | - | chr4_2:53616890-53616909 | Msa0606930:intron | 40.0% |
| !! | ATCTCAACTGGTTTGAGCTA+AGG | - | chr4_2:53616923-53616942 | Msa0606930:intron | 40.0% |
| !! | TCTCAACTGGTTTGAGCTAA+GGG | - | chr4_2:53616924-53616943 | Msa0606930:intron | 40.0% |
| CTAAGGGATTAGAGGAGTTA+AGG | - | chr4_2:53616940-53616959 | Msa0606930:intron | 40.0% | |
| ! | TGAAGAGACCTCTTCTAAGA+AGG | - | chr4_2:53617219-53617238 | Msa0606930:intron | 40.0% |
| TAAATTCCTCAACCTCAGCT+GGG | + | chr4_2:53617273-53617292 | None:intergenic | 40.0% | |
| ATAAATTCCTCAACCTCAGC+TGG | + | chr4_2:53617274-53617293 | None:intergenic | 40.0% | |
| GGAATTAATGAATGCTGCAC+TGG | + | chr4_2:53617382-53617401 | None:intergenic | 40.0% | |
| ! | TCTCTAGAAGAAGCTAGGAT+TGG | + | chr4_2:53617525-53617544 | None:intergenic | 40.0% |
| TGCAAATGGCCGTCATAAAA+TGG | - | chr4_2:53617929-53617948 | Msa0606930:intron | 40.0% | |
| ! | TAGTTGTGTGTTGTTGTTGG+AGG | + | chr4_2:53618116-53618135 | None:intergenic | 40.0% |
| GATAGGAGTTCTTTGAACTC+TGG | + | chr4_2:53618296-53618315 | None:intergenic | 40.0% | |
| TGTTTAGGAGAAGTTCTCTC+TGG | + | chr4_2:53618336-53618355 | None:intergenic | 40.0% | |
| AAAGGAAAGACAAGAGAGTG+AGG | + | chr4_2:53618382-53618401 | None:intergenic | 40.0% | |
| ! | ATTTTCATGTGAATGGGGAG+AGG | + | chr4_2:53618480-53618499 | None:intergenic | 40.0% |
| ! | GAAAGGTCAAAATGGGTTCA+AGG | + | chr4_2:53618538-53618557 | None:intergenic | 40.0% |
| !! | TGAACCCATTTTGACCTTTC+TGG | - | chr4_2:53618538-53618557 | Msa0606930:intron | 40.0% |
| GGAACCAGAAAGGTCAAAAT+GGG | + | chr4_2:53618545-53618564 | None:intergenic | 40.0% | |
| AGGAACCAGAAAGGTCAAAA+TGG | + | chr4_2:53618546-53618565 | None:intergenic | 40.0% | |
| GACTTTGATAGGAACCAGAA+AGG | + | chr4_2:53618555-53618574 | None:intergenic | 40.0% | |
| ATCTGATGTGGGACTTTGAT+AGG | + | chr4_2:53618566-53618585 | None:intergenic | 40.0% | |
| GGCTCTATCATATCTGATGT+GGG | + | chr4_2:53618577-53618596 | None:intergenic | 40.0% | |
| AGGCTCTATCATATCTGATG+TGG | + | chr4_2:53618578-53618597 | None:intergenic | 40.0% | |
| ACATTCCTCACGTTACAAGA+TGG | - | chr4_2:53618620-53618639 | Msa0606930:intron | 40.0% | |
| CAAAACCATCTTGTAACGTG+AGG | + | chr4_2:53618628-53618647 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGTAGGGTTGAGTT+TGG | - | chr4_2:53618640-53618659 | Msa0606930:intron | 40.0% |
| ! | GTGCCTATCTAAAATCCATC+GGG | - | chr4_2:53618690-53618709 | Msa0606930:intron | 40.0% |
| !! | TGTCCCGATGGATTTTAGAT+AGG | + | chr4_2:53618696-53618715 | None:intergenic | 40.0% |
| !! | GACTCGAGTGGTCTTATAAT+GGG | + | chr4_2:53618719-53618738 | None:intergenic | 40.0% |
| ATGTACGAGTGAGAGACATT+CGG | - | chr4_2:53618799-53618818 | Msa0606930:intron | 40.0% | |
| !! | TGAGAGACATTCGGTTTTGT+AGG | - | chr4_2:53618808-53618827 | Msa0606930:intron | 40.0% |
| !! | GAGAGACATTCGGTTTTGTA+GGG | - | chr4_2:53618809-53618828 | Msa0606930:intron | 40.0% |
| ! | CTGTTTTGCATGAAGTTGTC+AGG | - | chr4_2:53619066-53619085 | Msa0606930:CDS | 40.0% |
| TGGGGATCACGAAAATGAAA+TGG | - | chr4_2:53619145-53619164 | Msa0606930:CDS | 40.0% | |
| GGGGATCACGAAAATGAAAT+GGG | - | chr4_2:53619146-53619165 | Msa0606930:CDS | 40.0% | |
| !!! | TTCCAAAGCGTTGGATCTTT+TGG | + | chr4_2:53619200-53619219 | None:intergenic | 40.0% |
| TTTGGAAGACGCTTTATGTG+TGG | - | chr4_2:53619213-53619232 | Msa0606930:five_prime_UTR | 40.0% | |
| ACTGAGTGATGAACCAGAGA+GGG | + | chr4_2:53616196-53616215 | None:intergenic | 45.0% | |
| TACTGAGTGATGAACCAGAG+AGG | + | chr4_2:53616197-53616216 | None:intergenic | 45.0% | |
| GGAAGAGATTAACCAGAAGG+AGG | - | chr4_2:53616221-53616240 | Msa0606930:CDS | 45.0% | |
| AGAGATTAACCAGAAGGAGG+AGG | - | chr4_2:53616224-53616243 | Msa0606930:CDS | 45.0% | |
| GACAATGCCAATGAAGACAC+AGG | - | chr4_2:53616276-53616295 | Msa0606930:CDS | 45.0% | |
| ACCATACCCTGTGTCTTCAT+TGG | + | chr4_2:53616286-53616305 | None:intergenic | 45.0% | |
| TGAAGACACAGGGTATGGTA+CGG | - | chr4_2:53616287-53616306 | Msa0606930:CDS | 45.0% | |
| GATCAATTCATCTTCGGCGA+CGG | - | chr4_2:53616396-53616415 | Msa0606930:intron | 45.0% | |
| ! | GGTATTCCATGGATTTCTGG+TGG | + | chr4_2:53616491-53616510 | None:intergenic | 45.0% |
| CTCGGTATTCCATGGATTTC+TGG | + | chr4_2:53616494-53616513 | None:intergenic | 45.0% | |
| ! | GTAGGGGTAGTTTTCGCTTT+CGG | + | chr4_2:53616527-53616546 | None:intergenic | 45.0% |
| AACTACCCCTACAATCTCAC+CGG | - | chr4_2:53616535-53616554 | Msa0606930:intron | 45.0% | |
| AGTTACCGGTGAGATTGTAG+GGG | + | chr4_2:53616543-53616562 | None:intergenic | 45.0% | |
| TCGTAGAACACTGACAGCAT+TGG | + | chr4_2:53616645-53616664 | None:intergenic | 45.0% | |
| GCTGTCAGTGTTCTACGAAA+CGG | - | chr4_2:53616647-53616666 | Msa0606930:intron | 45.0% | |
| TATCCGACATTTGTCCGTGT+TGG | - | chr4_2:53616704-53616723 | Msa0606930:intron | 45.0% | |
| TGTCCAACACGGACAAATGT+CGG | + | chr4_2:53616710-53616729 | None:intergenic | 45.0% | |
| TGGTGGAAAATAGGCTTAGG+TGG | - | chr4_2:53616770-53616789 | Msa0606930:intron | 45.0% | |
| GATAGTCAGATCGTCACTAG+AGG | - | chr4_2:53616844-53616863 | Msa0606930:intron | 45.0% | |
| !! | AAGAGAAACTCTTGGTGGTG+GGG | - | chr4_2:53616891-53616910 | Msa0606930:intron | 45.0% |
| GGTTTGAGCTAAGGGATTAG+AGG | - | chr4_2:53616932-53616951 | Msa0606930:intron | 45.0% | |
| AGGGTTCAGTGTTCAAGTCA+TGG | - | chr4_2:53616960-53616979 | Msa0606930:intron | 45.0% | |
| TCAGTGTTCAAGTCATGGCA+AGG | - | chr4_2:53616965-53616984 | Msa0606930:intron | 45.0% | |
| ! | AGACCTCTTCTAAGAAGGCT+AGG | - | chr4_2:53617224-53617243 | Msa0606930:intron | 45.0% |
| ! | GACCTCTTCTAAGAAGGCTA+GGG | - | chr4_2:53617225-53617244 | Msa0606930:intron | 45.0% |
| ! | TTCCCTAGCCTTCTTAGAAG+AGG | + | chr4_2:53617230-53617249 | None:intergenic | 45.0% |
| ACTAGCAATGGAATGGGCAT+TGG | - | chr4_2:53617430-53617449 | Msa0606930:intron | 45.0% | |
| GCCTACGTTCACTATGCAAA+TGG | - | chr4_2:53617915-53617934 | Msa0606930:intron | 45.0% | |
| GCCATTTGCATAGTGAACGT+AGG | + | chr4_2:53617919-53617938 | None:intergenic | 45.0% | |
| !! | TCTAGCAGCTTAGCTCTGAT+AGG | + | chr4_2:53618313-53618332 | None:intergenic | 45.0% |
| TGTGAATGGGGAGAGGAAAA+GGG | + | chr4_2:53618473-53618492 | None:intergenic | 45.0% | |
| ATGTGAATGGGGAGAGGAAA+AGG | + | chr4_2:53618474-53618493 | None:intergenic | 45.0% | |
| ! | GGTCAAAATGGGTTCAAGGA+TGG | + | chr4_2:53618534-53618553 | None:intergenic | 45.0% |
| !! | TCTTATAATGGGTGTCCCGA+TGG | + | chr4_2:53618708-53618727 | None:intergenic | 45.0% |
| !! | GGACTCGAGTGGTCTTATAA+TGG | + | chr4_2:53618720-53618739 | None:intergenic | 45.0% |
| TATAAGACCACTCGAGTCCT+AGG | - | chr4_2:53618721-53618740 | Msa0606930:intron | 45.0% | |
| TTTGCATGAAGTTGTCAGGC+TGG | - | chr4_2:53619070-53619089 | Msa0606930:CDS | 45.0% | |
| GACTTGTCCATGGTGCAATT+GGG | - | chr4_2:53619126-53619145 | Msa0606930:CDS | 45.0% | |
| ACTTGTCCATGGTGCAATTG+GGG | - | chr4_2:53619127-53619146 | Msa0606930:CDS | 45.0% | |
| CTCCAAAAGATCCAACGCTT+TGG | - | chr4_2:53619195-53619214 | Msa0606930:five_prime_UTR | 45.0% | |
| ! | TAAAGCGTCTTCCAAAGCGT+TGG | + | chr4_2:53619209-53619228 | None:intergenic | 45.0% |
| GATGATCTTCCTCCTCCTTC+TGG | + | chr4_2:53616236-53616255 | None:intergenic | 50.0% | |
| AGGAGGAGGAAGATCATCCA+AGG | - | chr4_2:53616238-53616257 | Msa0606930:CDS | 50.0% | |
| GGAGGAGGAAGATCATCCAA+GGG | - | chr4_2:53616239-53616258 | Msa0606930:CDS | 50.0% | |
| GCCAATGAAGACACAGGGTA+TGG | - | chr4_2:53616282-53616301 | Msa0606930:CDS | 50.0% | |
| GGGTATGGTACGGAAGAGAA+CGG | - | chr4_2:53616297-53616316 | Msa0606930:CDS | 50.0% | |
| ATCGAGAGCTCGGTATTCCA+TGG | + | chr4_2:53616502-53616521 | None:intergenic | 50.0% | |
| GCTTTCGGTTATCGAGAGCT+CGG | + | chr4_2:53616512-53616531 | None:intergenic | 50.0% | |
| TACATGTGCGGTGTCCAACA+CGG | + | chr4_2:53616721-53616740 | None:intergenic | 50.0% | |
| !! | AGAGAAACTCTTGGTGGTGG+GGG | - | chr4_2:53616892-53616911 | Msa0606930:intron | 50.0% |
| !! | GGGGTGTTGTGTATCTCAAC+TGG | - | chr4_2:53616911-53616930 | Msa0606930:intron | 50.0% |
| ACTAAGTGGGGTCAGCTACA+TGG | + | chr4_2:53617121-53617140 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | - | chr4_2:53617120-53617139 | Msa0606930:intron | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | - | chr4_2:53617121-53617140 | Msa0606930:intron | 50.0% | |
| !!! | TTTTGGGGTAAACCCAGCTG+AGG | - | chr4_2:53617258-53617277 | Msa0606930:intron | 50.0% |
| AGAGGGCAAGAGACCAAGAA+AGG | - | chr4_2:53617303-53617322 | Msa0606930:intron | 50.0% | |
| !! | GGAATGGGCATTGGTGATTG+AGG | - | chr4_2:53617439-53617458 | Msa0606930:intron | 50.0% |
| !! | GGCATTGGTGATTGAGGCAT+TGG | - | chr4_2:53617445-53617464 | Msa0606930:intron | 50.0% |
| TGCACCATGGACAAGTCCAA+GGG | + | chr4_2:53619123-53619142 | None:intergenic | 50.0% | |
| TTGCACCATGGACAAGTCCA+AGG | + | chr4_2:53619124-53619143 | None:intergenic | 50.0% | |
| GGACTTGTCCATGGTGCAAT+TGG | - | chr4_2:53619125-53619144 | Msa0606930:CDS | 50.0% | |
| GGAGGAAGATCATCCAAGGG+CGG | - | chr4_2:53616242-53616261 | Msa0606930:CDS | 55.0% | |
| CGGCGACGGTGTAAATCCTT+TGG | - | chr4_2:53616410-53616429 | Msa0606930:intron | 55.0% | |
| GGTAAACCCAGCTGAGGTTG+AGG | - | chr4_2:53617264-53617283 | Msa0606930:intron | 55.0% | |
| AACACACCTCTCTCACGCCT+AGG | + | chr4_2:53618741-53618760 | None:intergenic | 55.0% | |
| ! | CCAAGGGTGTGATACGAGTC+AGG | + | chr4_2:53619107-53619126 | None:intergenic | 55.0% |
| ! | CCTGACTCGTATCACACCCT+TGG | - | chr4_2:53619104-53619123 | Msa0606930:CDS | 55.0% |
| CACACCCTTGGACTTGTCCA+TGG | - | chr4_2:53619116-53619135 | Msa0606930:CDS | 55.0% | |
| CGTGATCCCCAATTGCACCA+TGG | + | chr4_2:53619136-53619155 | None:intergenic | 55.0% | |
| TCGCTGTCTTCTACCGCCCT+TGG | + | chr4_2:53616258-53616277 | None:intergenic | 60.0% | |
| TCTCACGCCTAGGACTCGAG+TGG | + | chr4_2:53618731-53618750 | None:intergenic | 60.0% | |
| TCGAGTCCTAGGCGTGAGAG+AGG | - | chr4_2:53618732-53618751 | Msa0606930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53616155 | 53619244 | 53616155 | ID=Msa0606930;Name=Msa0606930 |
| chr4_2 | mRNA | 53616155 | 53619244 | 53616155 | ID=Msa0606930-mRNA-1;Parent=Msa0606930;Name=Msa0606930-mRNA-1;_AED=0.36;_eAED=0.36;_QI=64|1|0.75|1|1|1|4|0|247 |
| chr4_2 | exon | 53616155 | 53616340 | 53616155 | ID=Msa0606930-mRNA-1:exon:13286;Parent=Msa0606930-mRNA-1 |
| chr4_2 | exon | 53617449 | 53617562 | 53617449 | ID=Msa0606930-mRNA-1:exon:13285;Parent=Msa0606930-mRNA-1 |
| chr4_2 | exon | 53618075 | 53618180 | 53618075 | ID=Msa0606930-mRNA-1:exon:13284;Parent=Msa0606930-mRNA-1 |
| chr4_2 | exon | 53618843 | 53619244 | 53618843 | ID=Msa0606930-mRNA-1:exon:13283;Parent=Msa0606930-mRNA-1 |
| chr4_2 | five_prime_UTR | 53619181 | 53619244 | 53619181 | ID=Msa0606930-mRNA-1:five_prime_utr;Parent=Msa0606930-mRNA-1 |
| chr4_2 | CDS | 53618843 | 53619180 | 53618843 | ID=Msa0606930-mRNA-1:cds;Parent=Msa0606930-mRNA-1 |
| chr4_2 | CDS | 53618075 | 53618180 | 53618075 | ID=Msa0606930-mRNA-1:cds;Parent=Msa0606930-mRNA-1 |
| chr4_2 | CDS | 53617449 | 53617562 | 53617449 | ID=Msa0606930-mRNA-1:cds;Parent=Msa0606930-mRNA-1 |
| chr4_2 | CDS | 53616155 | 53616340 | 53616155 | ID=Msa0606930-mRNA-1:cds;Parent=Msa0606930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
