AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608010 MtrunA17_Chr4g0040201 95.192 208 9 1 1 207 1 208 9.94e-146 404
Msa0608010 MtrunA17_Chr2g0324511 64.780 159 46 5 8 160 9 163 4.77e-60 185
Msa0608010 MtrunA17_Chr2g0324521 59.829 117 42 3 47 160 2 116 5.59e-38 128
Msa0608010 MtrunA17_Chr2g0324571 57.500 120 42 3 47 160 2 118 8.18e-38 127
Msa0608010 MtrunA17_Chr2g0282341 43.066 137 65 6 50 180 4 133 2.77e-26 98.2
Msa0608010 MtrunA17_Chr2g0324531 58.140 43 18 0 159 201 2 44 6.52e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608010 AT4G20970.1 42.328 189 89 8 8 180 2 186 7.41e-32 114
Msa0608010 AT1G10585.1 28.161 174 114 6 11 182 11 175 2.36e-12 63.2
Msa0608010 AT1G10586.1 27.326 172 114 6 11 180 11 173 1.99e-11 60.5

Find 58 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTAGAAATTACTTAAAA+AGG 0.175107 4_2:+55026486 Msa0608010:five_prime_UTR
CCTCCATCTTGTGTTCAATT+TGG 0.181511 4_2:+55027424 Msa0608010:CDS
ATTTCAAAACATGGTGATTT+TGG 0.208325 4_2:-55027135 None:intergenic
CTAATATTTATATCTAATTA+TGG 0.230205 4_2:+55026534 Msa0608010:exon
TTAGGTCTATCTTAATATAT+AGG 0.260682 4_2:+55027568 Msa0608010:three_prime_UTR
AGAACCTTGGGGTTATAGTT+AGG 0.280194 4_2:-55026676 None:intergenic
TATCTAATTATGGATCAAAT+TGG 0.283616 4_2:+55026544 Msa0608010:exon
AGGGAGAAGAGAGTTGAGTT+TGG 0.296752 4_2:-55026656 None:intergenic
ATAAGAATTATGCTAGATTA+AGG 0.327945 4_2:+55027769 Msa0608010:three_prime_UTR
TAGGTCTATCTTAATATATA+GGG 0.337165 4_2:+55027569 Msa0608010:three_prime_UTR
AATATGTGGGGTTTCTAGTT+AGG 0.344816 4_2:+55027550 Msa0608010:exon
TACAAGACGATTAACTTATC+AGG 0.347401 4_2:-55027794 None:intergenic
ATATTAAGCTAAGAGATTAA+AGG 0.355914 4_2:-55027739 None:intergenic
GAGAGTTGAGTTTGGAGTAG+AGG 0.397503 4_2:-55026648 None:intergenic
TGAATTATCTCCAACCTTAG+AGG 0.408147 4_2:-55027277 None:intergenic
GGAATTACCGTTGGCGCTAC+CGG 0.409114 4_2:+55026987 Msa0608010:intron
AACCAGCCTTCTTTCAACTT+TGG 0.410390 4_2:-55026596 None:intergenic
GAACCTTGGGGTTATAGTTA+GGG 0.410715 4_2:-55026675 None:intergenic
TGATTTCATAGAAAATGAAT+TGG 0.413742 4_2:-55027209 None:intergenic
AAGGAGTGTCAATTCCTCTA+AGG 0.421100 4_2:+55027263 Msa0608010:CDS
AAGAAAGAAAGGTTATTAGC+TGG 0.449807 4_2:+55027075 Msa0608010:CDS
ATCGCCTCATCTACTTGATC+CGG 0.457881 4_2:-55027006 None:intergenic
TATGTAGGTAGGTTAAGAAT+AGG 0.460145 4_2:-55026442 None:intergenic
AGATTGAGAAGGTTTGTGTA+TGG 0.481420 4_2:+55027466 Msa0608010:CDS
GCTAGGGGATATAGCTATGT+AGG 0.500307 4_2:-55026457 None:intergenic
TTGGTTGTATTAGAGCTAGA+AGG 0.500610 4_2:-55026577 None:intergenic
ATGAAGAGAATGTAGACATA+AGG 0.503791 4_2:+55027244 Msa0608010:CDS
ATTTCTAAGATGAACTAGCT+AGG 0.508786 4_2:-55026474 None:intergenic
TTTCTAAGATGAACTAGCTA+GGG 0.509844 4_2:-55026473 None:intergenic
AGATCACGTGAATATTGCTT+AGG 0.512635 4_2:+55027108 Msa0608010:CDS
TTGGAACTGATCATAATATG+TGG 0.512688 4_2:+55027536 Msa0608010:CDS
CTAAAGTTGTGATTGATTGT+CGG 0.519208 4_2:+55027683 Msa0608010:three_prime_UTR
AGGCTGTATTTCCACATCAC+TGG 0.522661 4_2:-55027494 None:intergenic
ATACAACCAAAGTTGAAAGA+AGG 0.526780 4_2:+55026590 Msa0608010:CDS
TATAATTCAGGAATTACCGT+TGG 0.530375 4_2:+55026978 Msa0608010:intron
ACTTGATCCGGTAGCGCCAA+CGG 0.534008 4_2:-55026994 None:intergenic
ATTTCTTGAATTTCAAAACA+TGG 0.541430 4_2:-55027144 None:intergenic
CCTTCATGTTGTTCATGCTG+AGG 0.541669 4_2:+55027302 Msa0608010:CDS
AACCAAAGTTGAAAGAAGGC+TGG 0.543583 4_2:+55026594 Msa0608010:CDS
TGGAACTGATCATAATATGT+GGG 0.553773 4_2:+55027537 Msa0608010:CDS
CTACAAATCATTCTCACGTG+TGG 0.558837 4_2:+55027177 Msa0608010:CDS
AGTGTCAATTCCTCTAAGGT+TGG 0.561526 4_2:+55027267 Msa0608010:CDS
ATTTCAAAATCCCACAACTC+AGG 0.570407 4_2:-55027514 None:intergenic
AAGTGAGTGAGAGATTGAGA+AGG 0.570785 4_2:+55027455 Msa0608010:CDS
TGGCTAATGAGAAGAAAGAA+AGG 0.571122 4_2:+55027064 Msa0608010:CDS
TACAAATCATTCTCACGTGT+GGG 0.575180 4_2:+55027178 Msa0608010:CDS
GCTCCAAATTGAACACAAGA+TGG 0.580457 4_2:-55027427 None:intergenic
GGAAATACAGCCTGAGTTGT+GGG 0.582012 4_2:+55027504 Msa0608010:CDS
TTTAGAGGCAAATGTGCAGA+TGG 0.585387 4_2:+55027044 Msa0608010:CDS
GGGGATATAGCTATGTAGGT+AGG 0.585601 4_2:-55026453 None:intergenic
TGGAAATACAGCCTGAGTTG+TGG 0.593486 4_2:+55027503 Msa0608010:CDS
CCTCAGCATGAACAACATGA+AGG 0.636646 4_2:-55027302 None:intergenic
GGAACTGATCATAATATGTG+GGG 0.640483 4_2:+55027538 Msa0608010:CDS
GTATGGATCTTCCAGTGATG+TGG 0.643608 4_2:+55027483 Msa0608010:CDS
TTCTAAGATGAACTAGCTAG+GGG 0.654537 4_2:-55026472 None:intergenic
TCTCCCTAACTATAACCCCA+AGG 0.657270 4_2:+55026672 Msa0608010:CDS
CCAAATTGAACACAAGATGG+AGG 0.671279 4_2:-55027424 None:intergenic
GCTACCGGATCAAGTAGATG+AGG 0.685176 4_2:+55027002 Msa0608010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATATTTATATCTAATTA+TGG + chr4_2:55026534-55026553 Msa0608010:exon 10.0%
!! CTAATATTTATATCTAATTA+TGG + chr4_2:55026534-55026553 Msa0608010:exon 10.0%
!! ATCTTAGAAATTACTTAAAA+AGG + chr4_2:55026486-55026505 Msa0608010:five_prime_UTR 15.0%
!! TCTTAGAAATTACTTAAAAA+GGG + chr4_2:55026487-55026506 Msa0608010:five_prime_UTR 15.0%
!! TCACAAAAAAAAAAAAAAGT+TGG + chr4_2:55026733-55026752 Msa0608010:intron 15.0%
!!! TTTATCTTTTACAAAACTTT+TGG - chr4_2:55027598-55027617 None:intergenic 15.0%
!!! TTTTACATTGAAGTTATATA+CGG + chr4_2:55027716-55027735 Msa0608010:three_prime_UTR 15.0%
!! ATCTTAGAAATTACTTAAAA+AGG + chr4_2:55026486-55026505 Msa0608010:five_prime_UTR 15.0%
!! TCTTAGAAATTACTTAAAAA+GGG + chr4_2:55026487-55026506 Msa0608010:five_prime_UTR 15.0%
!! TCACAAAAAAAAAAAAAAGT+TGG + chr4_2:55026733-55026752 Msa0608010:intron 15.0%
!!! TTTATCTTTTACAAAACTTT+TGG - chr4_2:55027598-55027617 None:intergenic 15.0%
!!! TTTTACATTGAAGTTATATA+CGG + chr4_2:55027716-55027735 Msa0608010:three_prime_UTR 15.0%
!! TATCTAATTATGGATCAAAT+TGG + chr4_2:55026544-55026563 Msa0608010:exon 20.0%
!!! TGATGTCATTTTTATAATTC+AGG + chr4_2:55026966-55026985 Msa0608010:intron 20.0%
!! AAACTACATAAAAAGTTTAG+AGG + chr4_2:55027029-55027048 Msa0608010:CDS 20.0%
!! ATTTCTTGAATTTCAAAACA+TGG - chr4_2:55027147-55027166 None:intergenic 20.0%
!!! TGTTTTGAAATTCAAGAAAT+TGG + chr4_2:55027147-55027166 Msa0608010:CDS 20.0%
!! TGATTTCATAGAAAATGAAT+TGG - chr4_2:55027212-55027231 None:intergenic 20.0%
!! TTAGGTCTATCTTAATATAT+AGG + chr4_2:55027568-55027587 Msa0608010:three_prime_UTR 20.0%
!! TAGGTCTATCTTAATATATA+GGG + chr4_2:55027569-55027588 Msa0608010:three_prime_UTR 20.0%
!! ATATTAAGCTAAGAGATTAA+AGG - chr4_2:55027742-55027761 None:intergenic 20.0%
!! ATAAGAATTATGCTAGATTA+AGG + chr4_2:55027769-55027788 Msa0608010:three_prime_UTR 20.0%
!! TATCTAATTATGGATCAAAT+TGG + chr4_2:55026544-55026563 Msa0608010:exon 20.0%
!!! TGATGTCATTTTTATAATTC+AGG + chr4_2:55026966-55026985 Msa0608010:intron 20.0%
!! AAACTACATAAAAAGTTTAG+AGG + chr4_2:55027029-55027048 Msa0608010:CDS 20.0%
!! ATTTCTTGAATTTCAAAACA+TGG - chr4_2:55027147-55027166 None:intergenic 20.0%
!!! TGTTTTGAAATTCAAGAAAT+TGG + chr4_2:55027147-55027166 Msa0608010:CDS 20.0%
!! TGATTTCATAGAAAATGAAT+TGG - chr4_2:55027212-55027231 None:intergenic 20.0%
!! TTAGGTCTATCTTAATATAT+AGG + chr4_2:55027568-55027587 Msa0608010:three_prime_UTR 20.0%
!! TAGGTCTATCTTAATATATA+GGG + chr4_2:55027569-55027588 Msa0608010:three_prime_UTR 20.0%
!! ATATTAAGCTAAGAGATTAA+AGG - chr4_2:55027742-55027761 None:intergenic 20.0%
!! ATAAGAATTATGCTAGATTA+AGG + chr4_2:55027769-55027788 Msa0608010:three_prime_UTR 20.0%
! AAGAAAGAAATTAGAACCTT+GGG - chr4_2:55026691-55026710 None:intergenic 25.0%
! AAAGAAAGAAATTAGAACCT+TGG - chr4_2:55026692-55026711 None:intergenic 25.0%
!! AAAAAAAAAGTTGGTTACAC+TGG + chr4_2:55026742-55026761 Msa0608010:intron 25.0%
!!! ACTAACATGGTTTTAATTTG+TGG - chr4_2:55026929-55026948 None:intergenic 25.0%
! AAGAAAACAACTAACTAACA+TGG - chr4_2:55026942-55026961 None:intergenic 25.0%
!! ATTTCAAAACATGGTGATTT+TGG - chr4_2:55027138-55027157 None:intergenic 25.0%
! ATAAAGAGAGAACAATTACT+AGG - chr4_2:55027397-55027416 None:intergenic 25.0%
! AAGAAAGAAATTAGAACCTT+GGG - chr4_2:55026691-55026710 None:intergenic 25.0%
! AAAGAAAGAAATTAGAACCT+TGG - chr4_2:55026692-55026711 None:intergenic 25.0%
!! AAAAAAAAAGTTGGTTACAC+TGG + chr4_2:55026742-55026761 Msa0608010:intron 25.0%
!!! ACTAACATGGTTTTAATTTG+TGG - chr4_2:55026929-55026948 None:intergenic 25.0%
! AAGAAAACAACTAACTAACA+TGG - chr4_2:55026942-55026961 None:intergenic 25.0%
!! ATTTCAAAACATGGTGATTT+TGG - chr4_2:55027138-55027157 None:intergenic 25.0%
! ATAAAGAGAGAACAATTACT+AGG - chr4_2:55027397-55027416 None:intergenic 25.0%
TATGTAGGTAGGTTAAGAAT+AGG - chr4_2:55026445-55026464 None:intergenic 30.0%
!! TTTCTAAGATGAACTAGCTA+GGG - chr4_2:55026476-55026495 None:intergenic 30.0%
!! ATTTCTAAGATGAACTAGCT+AGG - chr4_2:55026477-55026496 None:intergenic 30.0%
ATACAACCAAAGTTGAAAGA+AGG + chr4_2:55026590-55026609 Msa0608010:CDS 30.0%
AGAAAGAAATTAGAACCTTG+GGG - chr4_2:55026690-55026709 None:intergenic 30.0%
TATAATTCAGGAATTACCGT+TGG + chr4_2:55026978-55026997 Msa0608010:intron 30.0%
AAGAAAGAAAGGTTATTAGC+TGG + chr4_2:55027075-55027094 Msa0608010:CDS 30.0%
ATGAAGAGAATGTAGACATA+AGG + chr4_2:55027244-55027263 Msa0608010:CDS 30.0%
TTGGAACTGATCATAATATG+TGG + chr4_2:55027536-55027555 Msa0608010:CDS 30.0%
TGGAACTGATCATAATATGT+GGG + chr4_2:55027537-55027556 Msa0608010:CDS 30.0%
CTAAAGTTGTGATTGATTGT+CGG + chr4_2:55027683-55027702 Msa0608010:three_prime_UTR 30.0%
TATGTAGGTAGGTTAAGAAT+AGG - chr4_2:55026445-55026464 None:intergenic 30.0%
!! TTTCTAAGATGAACTAGCTA+GGG - chr4_2:55026476-55026495 None:intergenic 30.0%
!! ATTTCTAAGATGAACTAGCT+AGG - chr4_2:55026477-55026496 None:intergenic 30.0%
ATACAACCAAAGTTGAAAGA+AGG + chr4_2:55026590-55026609 Msa0608010:CDS 30.0%
AGAAAGAAATTAGAACCTTG+GGG - chr4_2:55026690-55026709 None:intergenic 30.0%
TATAATTCAGGAATTACCGT+TGG + chr4_2:55026978-55026997 Msa0608010:intron 30.0%
AAGAAAGAAAGGTTATTAGC+TGG + chr4_2:55027075-55027094 Msa0608010:CDS 30.0%
ATGAAGAGAATGTAGACATA+AGG + chr4_2:55027244-55027263 Msa0608010:CDS 30.0%
TTGGAACTGATCATAATATG+TGG + chr4_2:55027536-55027555 Msa0608010:CDS 30.0%
TGGAACTGATCATAATATGT+GGG + chr4_2:55027537-55027556 Msa0608010:CDS 30.0%
CTAAAGTTGTGATTGATTGT+CGG + chr4_2:55027683-55027702 Msa0608010:three_prime_UTR 30.0%
!! TTCTAAGATGAACTAGCTAG+GGG - chr4_2:55026475-55026494 None:intergenic 35.0%
TTGGTTGTATTAGAGCTAGA+AGG - chr4_2:55026580-55026599 None:intergenic 35.0%
CCACAATATTGTGGATGTTA+CGG - chr4_2:55026882-55026901 None:intergenic 35.0%
TGGCTAATGAGAAGAAAGAA+AGG + chr4_2:55027064-55027083 Msa0608010:CDS 35.0%
AGATCACGTGAATATTGCTT+AGG + chr4_2:55027108-55027127 Msa0608010:CDS 35.0%
TACAAATCATTCTCACGTGT+GGG + chr4_2:55027178-55027197 Msa0608010:CDS 35.0%
TGAATTATCTCCAACCTTAG+AGG - chr4_2:55027280-55027299 None:intergenic 35.0%
AGATTGAGAAGGTTTGTGTA+TGG + chr4_2:55027466-55027485 Msa0608010:CDS 35.0%
ATTTCAAAATCCCACAACTC+AGG - chr4_2:55027517-55027536 None:intergenic 35.0%
!!! GAGTTGTGGGATTTTGAAAT+TGG + chr4_2:55027517-55027536 Msa0608010:CDS 35.0%
GGAACTGATCATAATATGTG+GGG + chr4_2:55027538-55027557 Msa0608010:CDS 35.0%
!! AATATGTGGGGTTTCTAGTT+AGG + chr4_2:55027550-55027569 Msa0608010:exon 35.0%
!! TTCTAAGATGAACTAGCTAG+GGG - chr4_2:55026475-55026494 None:intergenic 35.0%
TTGGTTGTATTAGAGCTAGA+AGG - chr4_2:55026580-55026599 None:intergenic 35.0%
CCACAATATTGTGGATGTTA+CGG - chr4_2:55026882-55026901 None:intergenic 35.0%
TGGCTAATGAGAAGAAAGAA+AGG + chr4_2:55027064-55027083 Msa0608010:CDS 35.0%
AGATCACGTGAATATTGCTT+AGG + chr4_2:55027108-55027127 Msa0608010:CDS 35.0%
TACAAATCATTCTCACGTGT+GGG + chr4_2:55027178-55027197 Msa0608010:CDS 35.0%
TGAATTATCTCCAACCTTAG+AGG - chr4_2:55027280-55027299 None:intergenic 35.0%
AGATTGAGAAGGTTTGTGTA+TGG + chr4_2:55027466-55027485 Msa0608010:CDS 35.0%
ATTTCAAAATCCCACAACTC+AGG - chr4_2:55027517-55027536 None:intergenic 35.0%
!!! GAGTTGTGGGATTTTGAAAT+TGG + chr4_2:55027517-55027536 Msa0608010:CDS 35.0%
GGAACTGATCATAATATGTG+GGG + chr4_2:55027538-55027557 Msa0608010:CDS 35.0%
!! AATATGTGGGGTTTCTAGTT+AGG + chr4_2:55027550-55027569 Msa0608010:exon 35.0%
AACCAAAGTTGAAAGAAGGC+TGG + chr4_2:55026594-55026613 Msa0608010:CDS 40.0%
AACCAGCCTTCTTTCAACTT+TGG - chr4_2:55026599-55026618 None:intergenic 40.0%
GAACCTTGGGGTTATAGTTA+GGG - chr4_2:55026678-55026697 None:intergenic 40.0%
AGAACCTTGGGGTTATAGTT+AGG - chr4_2:55026679-55026698 None:intergenic 40.0%
ATGACGAAGCCACAATATTG+TGG + chr4_2:55026834-55026853 Msa0608010:intron 40.0%
AAGCCACAATATTGTGGTTG+TGG + chr4_2:55026840-55026859 Msa0608010:intron 40.0%
CTACCACAACCACAATATTG+TGG - chr4_2:55026846-55026865 None:intergenic 40.0%
CCGTAACATCCACAATATTG+TGG + chr4_2:55026879-55026898 Msa0608010:intron 40.0%
CATCCACAATATTGTGGTTG+TGG + chr4_2:55026885-55026904 Msa0608010:intron 40.0%
CTACCACAACCACAATATTG+TGG - chr4_2:55026846-55026865 None:intergenic 40.0%
TTTAGAGGCAAATGTGCAGA+TGG + chr4_2:55027044-55027063 Msa0608010:CDS 40.0%
CTACAAATCATTCTCACGTG+TGG + chr4_2:55027177-55027196 Msa0608010:CDS 40.0%
!! AAGGAGTGTCAATTCCTCTA+AGG + chr4_2:55027263-55027282 Msa0608010:CDS 40.0%
!! AGTGTCAATTCCTCTAAGGT+TGG + chr4_2:55027267-55027286 Msa0608010:CDS 40.0%
CCAAATTGAACACAAGATGG+AGG - chr4_2:55027427-55027446 None:intergenic 40.0%
CCTCCATCTTGTGTTCAATT+TGG + chr4_2:55027424-55027443 Msa0608010:CDS 40.0%
GCTCCAAATTGAACACAAGA+TGG - chr4_2:55027430-55027449 None:intergenic 40.0%
AAGTGAGTGAGAGATTGAGA+AGG + chr4_2:55027455-55027474 Msa0608010:CDS 40.0%
AACCAAAGTTGAAAGAAGGC+TGG + chr4_2:55026594-55026613 Msa0608010:CDS 40.0%
AACCAGCCTTCTTTCAACTT+TGG - chr4_2:55026599-55026618 None:intergenic 40.0%
GAACCTTGGGGTTATAGTTA+GGG - chr4_2:55026678-55026697 None:intergenic 40.0%
AGAACCTTGGGGTTATAGTT+AGG - chr4_2:55026679-55026698 None:intergenic 40.0%
ATGACGAAGCCACAATATTG+TGG + chr4_2:55026834-55026853 Msa0608010:intron 40.0%
AAGCCACAATATTGTGGTTG+TGG + chr4_2:55026840-55026859 Msa0608010:intron 40.0%
CTACCACAACCACAATATTG+TGG - chr4_2:55026846-55026865 None:intergenic 40.0%
CCGTAACATCCACAATATTG+TGG + chr4_2:55026879-55026898 Msa0608010:intron 40.0%
CATCCACAATATTGTGGTTG+TGG + chr4_2:55026885-55026904 Msa0608010:intron 40.0%
CTACCACAACCACAATATTG+TGG - chr4_2:55026846-55026865 None:intergenic 40.0%
TTTAGAGGCAAATGTGCAGA+TGG + chr4_2:55027044-55027063 Msa0608010:CDS 40.0%
CTACAAATCATTCTCACGTG+TGG + chr4_2:55027177-55027196 Msa0608010:CDS 40.0%
!! AAGGAGTGTCAATTCCTCTA+AGG + chr4_2:55027263-55027282 Msa0608010:CDS 40.0%
!! AGTGTCAATTCCTCTAAGGT+TGG + chr4_2:55027267-55027286 Msa0608010:CDS 40.0%
CCAAATTGAACACAAGATGG+AGG - chr4_2:55027427-55027446 None:intergenic 40.0%
CCTCCATCTTGTGTTCAATT+TGG + chr4_2:55027424-55027443 Msa0608010:CDS 40.0%
GCTCCAAATTGAACACAAGA+TGG - chr4_2:55027430-55027449 None:intergenic 40.0%
AAGTGAGTGAGAGATTGAGA+AGG + chr4_2:55027455-55027474 Msa0608010:CDS 40.0%
GGGGATATAGCTATGTAGGT+AGG - chr4_2:55026456-55026475 None:intergenic 45.0%
GCTAGGGGATATAGCTATGT+AGG - chr4_2:55026460-55026479 None:intergenic 45.0%
! GAGAGTTGAGTTTGGAGTAG+AGG - chr4_2:55026651-55026670 None:intergenic 45.0%
AGGGAGAAGAGAGTTGAGTT+TGG - chr4_2:55026659-55026678 None:intergenic 45.0%
TCTCCCTAACTATAACCCCA+AGG + chr4_2:55026672-55026691 Msa0608010:CDS 45.0%
ATCGCCTCATCTACTTGATC+CGG - chr4_2:55027009-55027028 None:intergenic 45.0%
CCTCAGCATGAACAACATGA+AGG - chr4_2:55027305-55027324 None:intergenic 45.0%
CCTTCATGTTGTTCATGCTG+AGG + chr4_2:55027302-55027321 Msa0608010:CDS 45.0%
GTATGGATCTTCCAGTGATG+TGG + chr4_2:55027483-55027502 Msa0608010:CDS 45.0%
AGGCTGTATTTCCACATCAC+TGG - chr4_2:55027497-55027516 None:intergenic 45.0%
TGGAAATACAGCCTGAGTTG+TGG + chr4_2:55027503-55027522 Msa0608010:CDS 45.0%
GGAAATACAGCCTGAGTTGT+GGG + chr4_2:55027504-55027523 Msa0608010:CDS 45.0%
GGGGATATAGCTATGTAGGT+AGG - chr4_2:55026456-55026475 None:intergenic 45.0%
GCTAGGGGATATAGCTATGT+AGG - chr4_2:55026460-55026479 None:intergenic 45.0%
! GAGAGTTGAGTTTGGAGTAG+AGG - chr4_2:55026651-55026670 None:intergenic 45.0%
AGGGAGAAGAGAGTTGAGTT+TGG - chr4_2:55026659-55026678 None:intergenic 45.0%
TCTCCCTAACTATAACCCCA+AGG + chr4_2:55026672-55026691 Msa0608010:CDS 45.0%
ATCGCCTCATCTACTTGATC+CGG - chr4_2:55027009-55027028 None:intergenic 45.0%
CCTCAGCATGAACAACATGA+AGG - chr4_2:55027305-55027324 None:intergenic 45.0%
CCTTCATGTTGTTCATGCTG+AGG + chr4_2:55027302-55027321 Msa0608010:CDS 45.0%
GTATGGATCTTCCAGTGATG+TGG + chr4_2:55027483-55027502 Msa0608010:CDS 45.0%
AGGCTGTATTTCCACATCAC+TGG - chr4_2:55027497-55027516 None:intergenic 45.0%
TGGAAATACAGCCTGAGTTG+TGG + chr4_2:55027503-55027522 Msa0608010:CDS 45.0%
GGAAATACAGCCTGAGTTGT+GGG + chr4_2:55027504-55027523 Msa0608010:CDS 45.0%
GCTACCGGATCAAGTAGATG+AGG + chr4_2:55027002-55027021 Msa0608010:CDS 50.0%
GCTACCGGATCAAGTAGATG+AGG + chr4_2:55027002-55027021 Msa0608010:CDS 50.0%
GGAATTACCGTTGGCGCTAC+CGG + chr4_2:55026987-55027006 Msa0608010:intron 55.0%
ACTTGATCCGGTAGCGCCAA+CGG - chr4_2:55026997-55027016 None:intergenic 55.0%
GGAATTACCGTTGGCGCTAC+CGG + chr4_2:55026987-55027006 Msa0608010:intron 55.0%
ACTTGATCCGGTAGCGCCAA+CGG - chr4_2:55026997-55027016 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55026435 55027804 55026435 ID=Msa0608010;Name=Msa0608010
chr4_2 mRNA 55026435 55027804 55026435 ID=Msa0608010-mRNA-1;Parent=Msa0608010;Name=Msa0608010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=118|1|1|1|1|1|3|237|207
chr4_2 exon 55026435 55026693 55026435 ID=Msa0608010-mRNA-1:exon:13925;Parent=Msa0608010-mRNA-1
chr4_2 exon 55026988 55027323 55026988 ID=Msa0608010-mRNA-1:exon:13926;Parent=Msa0608010-mRNA-1
chr4_2 exon 55027421 55027804 55027421 ID=Msa0608010-mRNA-1:exon:13927;Parent=Msa0608010-mRNA-1
chr4_2 five_prime_UTR 55026435 55026552 55026435 ID=Msa0608010-mRNA-1:five_prime_utr;Parent=Msa0608010-mRNA-1
chr4_2 CDS 55026553 55026693 55026553 ID=Msa0608010-mRNA-1:cds;Parent=Msa0608010-mRNA-1
chr4_2 CDS 55026988 55027323 55026988 ID=Msa0608010-mRNA-1:cds;Parent=Msa0608010-mRNA-1
chr4_2 CDS 55027421 55027567 55027421 ID=Msa0608010-mRNA-1:cds;Parent=Msa0608010-mRNA-1
chr4_2 three_prime_UTR 55027568 55027804 55027568 ID=Msa0608010-mRNA-1:three_prime_utr;Parent=Msa0608010-mRNA-1
Gene Sequence

>Msa0608010

ATGGATCAAATTGGAAGTGATCAACCTTCTAGCTCTAATACAACCAAAGTTGAAAGAAGGCTGGTTGAGAAAAACAGAAGAAATCAGATGAAGATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAATTACCGTTGGCGCTACCGGATCAAGTAGATGAGGCGATAAACTACATAAAAAGTTTAGAGGCAAATGTGCAGATGGCTAATGAGAAGAAAGAAAGGTTATTAGCTGGAAAGAATAAAAGATCACGTGAATATTGCTTAGGTCAACCAAAATCACCATGTTTTGAAATTCAAGAAATTGGTTCTTCTCTACAAATCATTCTCACGTGTGGGTTAGATAGCCAATTCATTTTCTATGAAATCATTCGTGTGTTACATGAAGAGAATGTAGACATAAGGAGTGTCAATTCCTCTAAGGTTGGAGATAATTCACTCCTTCATGTTGTTCATGCTGAGATTCCTCCATCTTGTGTTCAATTTGGAGCGACGAAAGTGAGTGAGAGATTGAGAAGGTTTGTGTATGGATCTTCCAGTGATGTGGAAATACAGCCTGAGTTGTGGGATTTTGAAATTGGAACTGATCATAATATGTGGGGTTTCTAG
Protein sequence

>Msa0608010

MDQIGSDQPSSSNTTKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVQMANEKKERLLAGKNKRSREYCLGQPKSPCFEIQEIGSSLQIILTCGLDSQFIFYEIIRVLHEENVDIRSVNSSKVGDNSLLHVVHAEIPPSCVQFGATKVSERLRRFVYGSSSDVEIQPELWDFEIGTDHNMWGF*