AlfalfaGEDB | Msa0554460

M. sativa cultivar zhongmu-4 / Msa0554460

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554460	XP_003607469.1	94.231	208	11	1	1	207	1	208	9.39e-140	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554460	sp\|F4JIJ7\|BH162_ARATH	42.328	189	89	8	8	180	2	186	2.07e-31	116

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554460	G7JTT7	94.231	208	11	1	1	207	1	208	4.49e-140	399

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TFs/TRs:

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Gene ID	Type	Classification
Msa0554460	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0554460	Msa0608010	0.808381	3.185487e-50	-8.615850e-47
Msa0554460	Msa0648320	0.914923	1.082873e-84	-8.615850e-47
Msa0554460	Msa0691120	0.914405	1.992835e-84	-8.615850e-47
Msa0554460	Msa1445680	0.920003	2.217034e-87	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554460	MtrunA17_Chr4g0040201	94.231	208	11	1	1	207	1	208	8.64e-144	399
Msa0554460	MtrunA17_Chr2g0324511	65.409	159	45	5	8	160	9	163	5.56e-60	185
Msa0554460	MtrunA17_Chr2g0324521	59.483	116	44	2	47	160	2	116	4.87e-39	130
Msa0554460	MtrunA17_Chr2g0324571	57.500	120	42	3	47	160	2	118	4.70e-38	128
Msa0554460	MtrunA17_Chr2g0282341	44.526	137	63	6	50	180	4	133	5.29e-29	105
Msa0554460	MtrunA17_Chr2g0324531	60.465	43	17	0	159	201	2	44	1.01e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554460	AT4G20970.1	42.328	189	89	8	8	180	2	186	2.11e-32	116
Msa0554460	AT1G10585.1	27.429	175	116	6	10	182	10	175	1.79e-11	60.8

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Find 57 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAAAGTTGAAAGAAGGC+TGG	0.543583	4_1:-51754997	Msa0554460:CDS
AACCAGCCTTCTTTCAACTT+TGG	0.410390	4_1:+51754995	None:intergenic
AAGGAGTGTCAATTCCTCTA+AGG	0.421100	4_1:-51754483	Msa0554460:CDS
AAGTGAGTGAGAGATTGAAA+AGG	0.491808	4_1:-51754293	Msa0554460:CDS
AATATGTGGGGTTTCTAGTT+AGG	0.344816	4_1:-51754198	Msa0554460:exon
ACTTGATCCGGTAGCGCCAA+CGG	0.534008	4_1:+51754752	None:intergenic
AGAACCTTGGGGTTATAGTT+AGG	0.280194	4_1:+51754915	None:intergenic
AGATCACGTGAATATTGCTT+AGG	0.510152	4_1:-51754638	Msa0554460:CDS
AGATTGAAAAGGTTTGTGTA+TGG	0.509660	4_1:-51754282	Msa0554460:CDS
AGGCTGTATTTCCACATCAC+TGG	0.522661	4_1:+51754254	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTAGGTAGGTTAAGAAT+AGG	+	chr4_1:51753976-51753995	None:intergenic	30.0%
ATACAACCAAAGTTGAAAGA+AGG	-	chr4_1:51754121-51754140	Msa0554460:three_prime_UTR	30.0%
AGAAAGAAATTAGAACCTTG+GGG	+	chr4_1:51754221-51754240	None:intergenic	30.0%
ACAATACTAGTTAGCTACAA+TGG	-	chr4_1:51754264-51754283	Msa0554460:CDS	30.0%
TATAATTCAGGAATTACCGT+TGG	-	chr4_1:51754354-51754373	Msa0554460:intron	30.0%
ATGAAGAGAATGTAGACATA+AGG	-	chr4_1:51754620-51754639	Msa0554460:CDS	30.0%
ATAAAGAGAGAGCAATTACT+AGG	+	chr4_1:51754771-51754790	None:intergenic	30.0%
AGATTGAAAAGGTTTGTGTA+TGG	-	chr4_1:51754840-51754859	Msa0554460:intron	30.0%
TTGGAACTGATCATAATATG+TGG	-	chr4_1:51754910-51754929	Msa0554460:intron	30.0%
TGGAACTGATCATAATATGT+GGG	-	chr4_1:51754911-51754930	Msa0554460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	51753966	51755178	51753966	ID=Msa0554460;Name=Msa0554460
chr4_1	mRNA	51753966	51755178	51753966	ID=Msa0554460-mRNA-1;Parent=Msa0554460;Name=Msa0554460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=118\|1\|1\|1\|1\|1\|3\|237\|207
chr4_1	exon	51753966	51754349	51753966	ID=Msa0554460-mRNA-1:exon:14888;Parent=Msa0554460-mRNA-1
chr4_1	exon	51754445	51754780	51754445	ID=Msa0554460-mRNA-1:exon:14887;Parent=Msa0554460-mRNA-1
chr4_1	exon	51754920	51755178	51754920	ID=Msa0554460-mRNA-1:exon:14886;Parent=Msa0554460-mRNA-1
chr4_1	five_prime_UTR	51755061	51755178	51755061	ID=Msa0554460-mRNA-1:five_prime_utr;Parent=Msa0554460-mRNA-1
chr4_1	CDS	51754920	51755060	51754920	ID=Msa0554460-mRNA-1:cds;Parent=Msa0554460-mRNA-1
chr4_1	CDS	51754445	51754780	51754445	ID=Msa0554460-mRNA-1:cds;Parent=Msa0554460-mRNA-1
chr4_1	CDS	51754203	51754349	51754203	ID=Msa0554460-mRNA-1:cds;Parent=Msa0554460-mRNA-1
chr4_1	three_prime_UTR	51753966	51754202	51753966	ID=Msa0554460-mRNA-1:three_prime_utr;Parent=Msa0554460-mRNA-1

Gene Sequence

>Msa0554460

ATGGATCAAATTGGAAGTGATCAACCTTCTAGCTCTAATACAACCAAAGTTGAAAGAAGGCTGGTTGAGAAAAACAGAAGAAATCAGATGAAGATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAATTACCGTTGGCGCTACCGGATCAAGTAGATGAGGCGATAAACTACATAAAAAGTTTAGAGGCAAATGTTGAGATGGCTAAGGAGAAGAAAGAAAGGTTATTAGCAGTAAAGAAGAAAAGATCACGTGAATATTGCTTAGGTCTACCAAAATCACCATGTTTTGAAATTCAAGAAATTGGTTCTTCTCTACAAATCATTCTCACGTGTGGGTTTGATAACCAATTCATTTTCTATGAAATCATTCGTGTGTTACATGAAGAGAATGTAGACATAAGGAGTGTCAATTCCTCTAAGGTTGGAGATAATTCACTCCTTCATGTTGTTCATGCTGAGATTCCTCCATCTTGTTTTCAATTTGGAGCGACGAAAGTGAGTGAGAGATTGAAAAGGTTTGTGTATGGATCTTCCAGTGATGTGGAAATACAGCCTGAGTTGTGGGATTTTGAAATTGGAACTGATCATAATATGTGGGGTTTCTAG

Protein sequence

>Msa0554460

MDQIGSDQPSSSNTTKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVEMAKEKKERLLAVKKKRSREYCLGLPKSPCFEIQEIGSSLQIILTCGFDNQFIFYEIIRVLHEENVDIRSVNSSKVGDNSLLHVVHAEIPPSCFQFGATKVSERLKRFVYGSSSDVEIQPELWDFEIGTDHNMWGF*