AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609530 MtrunA17_Chr4g0042151 87.027 185 20 1 221 405 1 181 6.09e-108 315
Msa0609530 MtrunA17_Chr4g0042151 69.231 130 33 2 6 135 1 123 8.80e-56 182
Msa0609530 MtrunA17_Chr4g0042161 92.361 144 6 1 1 144 1 139 1.10e-89 267
Msa0609530 MtrunA17_Chr4g0042161 72.269 119 30 1 229 347 15 130 1.74e-48 161
Msa0609530 MtrunA17_Chr7g0263001 57.831 83 35 0 55 137 34 116 5.94e-26 102
Msa0609530 MtrunA17_Chr7g0263001 51.282 78 38 0 270 347 37 114 3.34e-22 92.0
Msa0609530 MtrunA17_Chr6g0481071 50.000 96 48 0 40 135 79 174 3.30e-24 98.6
Msa0609530 MtrunA17_Chr6g0481071 48.101 79 41 0 270 348 97 175 4.02e-22 92.8
Msa0609530 MtrunA17_Chr7g0266751 50.649 77 38 0 58 134 34 110 9.09e-20 85.1
Msa0609530 MtrunA17_Chr7g0266751 46.835 79 42 0 270 348 34 112 1.98e-18 81.3
Msa0609530 MtrunA17_Chr4g0061451 41.837 98 52 1 44 136 25 122 1.67e-19 87.8
Msa0609530 MtrunA17_Chr4g0061451 42.353 85 47 1 266 348 40 124 4.96e-15 74.7
Msa0609530 MtrunA17_Chr1g0198431 45.000 80 44 0 58 137 194 273 2.14e-18 84.7
Msa0609530 MtrunA17_Chr1g0198431 39.362 94 50 2 270 360 194 283 1.50e-16 79.3
Msa0609530 MtrunA17_Chr3g0086861 46.512 86 46 0 54 139 42 127 5.02e-18 85.5
Msa0609530 MtrunA17_Chr3g0086861 45.977 87 45 1 263 347 39 125 2.59e-15 77.4
Msa0609530 MtrunA17_Chr7g0219021 42.353 85 49 0 55 139 39 123 6.20e-17 80.1
Msa0609530 MtrunA17_Chr7g0219021 43.590 78 44 0 270 347 42 119 2.34e-15 75.5
Msa0609530 MtrunA17_Chr3g0121631 41.414 99 55 2 39 137 21 116 1.81e-16 75.9
Msa0609530 MtrunA17_Chr3g0121631 42.308 78 44 1 270 347 38 114 8.48e-14 68.6
Msa0609530 MtrunA17_Chr7g0219031 45.205 73 40 0 55 127 39 111 4.05e-15 71.2
Msa0609530 MtrunA17_Chr7g0219031 40.000 90 49 2 251 339 26 111 1.23e-14 70.1
Msa0609530 MtrunA17_Chr3g0088511 38.889 90 51 1 55 144 31 116 5.16e-14 68.6
Msa0609530 MtrunA17_Chr3g0088511 41.558 77 45 0 270 346 34 110 1.10e-12 65.1
Msa0609530 MtrunA17_Chr4g0018581 45.833 72 39 0 56 127 451 522 2.88e-13 71.6
Msa0609530 MtrunA17_Chr4g0035001 40.541 74 44 0 51 124 1 74 6.38e-13 66.2
Msa0609530 MtrunA17_Chr4g0035051 38.356 73 45 0 52 124 4 76 8.19e-13 64.7
Msa0609530 MtrunA17_Chr4g0035051 35.526 76 49 0 261 336 1 76 2.48e-11 60.5
Msa0609530 MtrunA17_Chr2g0327921 38.750 80 49 0 56 135 7 86 2.01e-12 62.8
Msa0609530 MtrunA17_Chr2g0327921 32.099 81 55 0 270 350 9 89 5.47e-11 58.9
Msa0609530 MtrunA17_Chr4g0050781 41.489 94 47 3 53 143 4 92 4.70e-12 65.1
Msa0609530 MtrunA17_Chr2g0278661 41.026 78 46 0 58 135 9 86 1.84e-11 63.9
Msa0609530 MtrunA17_Chr8g0349601 33.058 121 73 2 236 348 159 279 1.87e-11 64.3
Msa0609530 MtrunA17_Chr3g0119311 39.241 79 48 0 58 136 38 116 2.77e-11 60.8
Msa0609530 MtrunA17_Chr4g0031091 34.615 78 51 0 55 132 32 109 4.36e-11 59.7
Msa0609530 MtrunA17_Chr4g0035031 42.424 66 38 0 59 124 11 76 6.31e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609530 AT5G54580.1 62.963 135 44 1 1 135 7 135 2.48e-49 164
Msa0609530 AT5G54580.1 56.618 136 55 1 226 361 18 149 3.00e-43 149
Msa0609530 AT2G37510.1 63.014 73 27 0 58 130 36 108 1.45e-24 98.6
Msa0609530 AT2G37510.1 47.706 109 55 1 270 378 36 142 2.16e-21 90.1
Msa0609530 AT1G73530.1 47.872 94 49 0 54 147 75 168 8.79e-24 97.8
Msa0609530 AT1G73530.1 45.238 84 46 0 266 349 75 158 7.23e-20 87.0
Msa0609530 AT2G37510.2 46.939 98 27 1 58 130 36 133 4.70e-19 84.3
Msa0609530 AT2G37510.2 38.806 134 55 2 270 378 36 167 3.92e-16 76.3
Msa0609530 AT5G06210.1 44.706 85 47 0 55 139 33 117 5.02e-17 78.2
Msa0609530 AT5G06210.1 43.590 78 44 0 270 347 36 113 2.45e-15 73.2
Msa0609530 AT3G20930.1 41.772 79 46 0 58 136 284 362 5.58e-16 79.3
Msa0609530 AT3G20930.1 25.000 204 117 5 151 347 187 361 1.98e-14 74.7
Msa0609530 AT5G61030.2 43.902 82 46 0 54 135 38 119 1.15e-15 77.8
Msa0609530 AT5G61030.2 45.570 79 43 0 270 348 42 120 2.56e-15 76.6
Msa0609530 AT5G61030.1 43.902 82 46 0 54 135 38 119 1.15e-15 77.8
Msa0609530 AT5G61030.1 45.570 79 43 0 270 348 42 120 2.56e-15 76.6
Msa0609530 AT3G46020.1 38.158 76 47 0 270 345 9 84 4.85e-15 70.9
Msa0609530 AT3G46020.1 40.506 79 47 0 55 133 6 84 8.49e-15 70.5
Msa0609530 AT4G13850.4 47.561 82 43 0 55 136 34 115 4.96e-15 72.0
Msa0609530 AT4G13850.4 44.776 67 37 0 270 336 37 103 1.55e-11 62.0
Msa0609530 AT1G18630.1 48.611 72 37 0 56 127 36 107 1.25e-14 71.6
Msa0609530 AT1G18630.1 47.143 70 37 0 270 339 38 107 1.52e-12 65.5
Msa0609530 AT3G23830.2 41.584 101 56 1 37 137 19 116 1.52e-14 70.9
Msa0609530 AT3G23830.2 43.210 81 46 0 270 350 37 117 3.89e-14 69.7
Msa0609530 AT3G23830.1 41.584 101 56 1 37 137 19 116 1.52e-14 70.9
Msa0609530 AT3G23830.1 43.210 81 46 0 270 350 37 117 3.89e-14 69.7
Msa0609530 AT4G13850.3 47.561 82 43 0 55 136 34 115 1.61e-14 70.9
Msa0609530 AT4G13850.3 36.111 108 55 2 236 336 3 103 1.04e-11 62.8
Msa0609530 AT4G13850.2 47.561 82 43 0 55 136 34 115 1.98e-14 70.9
Msa0609530 AT4G13850.2 36.111 108 55 2 236 336 3 103 1.26e-11 62.8
Msa0609530 AT4G13850.1 47.561 82 43 0 55 136 34 115 2.21e-14 70.9
Msa0609530 AT4G13850.1 36.111 108 55 2 236 336 3 103 1.40e-11 62.8
Msa0609530 AT4G13860.1 47.143 70 37 0 55 124 2 71 4.17e-14 67.8
Msa0609530 AT4G13860.1 43.284 67 38 0 270 336 5 71 6.61e-12 61.6
Msa0609530 AT3G20930.2 39.286 84 46 1 58 136 284 367 5.58e-14 73.2
Msa0609530 AT3G20930.2 24.402 209 117 6 151 347 187 366 1.72e-12 68.9
Msa0609530 AT4G39260.3 39.326 89 54 0 51 139 1 89 9.63e-14 67.0
Msa0609530 AT4G39260.3 36.364 77 49 0 271 347 9 85 9.08e-11 58.5
Msa0609530 AT2G43370.2 35.417 96 62 0 44 139 52 147 1.41e-13 69.7
Msa0609530 AT5G59865.1 43.750 80 45 0 56 135 26 105 2.38e-13 66.6
Msa0609530 AT5G59865.1 41.026 78 46 0 270 347 28 105 1.71e-11 61.2
Msa0609530 AT5G47320.1 38.144 97 57 1 40 136 18 111 7.32e-13 67.8
Msa0609530 AT2G43370.1 35.417 96 62 0 44 139 52 147 8.04e-13 69.3
Msa0609530 AT4G39260.2 39.759 83 50 0 51 133 1 83 8.94e-13 65.5
Msa0609530 AT1G74230.1 43.590 78 43 1 55 132 33 109 1.62e-12 68.2
Msa0609530 AT1G74230.1 40.000 75 44 1 270 344 36 109 7.95e-11 63.2
Msa0609530 AT5G51300.1 37.500 96 55 2 32 127 461 551 5.09e-12 68.2
Msa0609530 AT5G51300.2 37.500 96 55 2 32 127 461 551 5.09e-12 68.2
Msa0609530 AT5G51300.3 37.500 96 55 2 32 127 461 551 5.09e-12 68.2
Msa0609530 AT4G39260.1 41.558 77 45 0 51 127 1 77 6.74e-12 63.9
Msa0609530 AT4G24770.1 36.000 100 64 0 38 137 226 325 7.25e-12 66.6
Msa0609530 AT4G24770.2 36.000 100 64 0 38 137 226 325 7.25e-12 66.6
Msa0609530 AT3G08000.1 37.000 100 55 1 57 148 42 141 1.40e-11 62.4
Msa0609530 AT3G08000.1 38.272 81 50 0 270 350 43 123 5.12e-11 60.8
Msa0609530 AT3G11400.2 33.051 118 63 2 35 136 203 320 4.94e-11 63.9
Msa0609530 AT3G11400.1 33.051 118 63 2 35 136 176 293 5.14e-11 63.5
Msa0609530 AT2G46780.1 39.535 86 48 1 56 137 22 107 6.21e-11 63.9
Msa0609530 AT2G46780.2 39.535 86 48 1 56 137 22 107 6.21e-11 63.9
Msa0609530 AT3G26420.1 37.805 82 51 0 53 134 4 85 6.36e-11 62.8

Find 154 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTAACGTTTGACTATTT+TGG 0.155771 4_2:+56870508 None:intergenic
CATCCATGTCATTGTCTAAA+AGG 0.158584 4_2:+56870371 None:intergenic
TTCTCATCATCGCCGCCTTC+TGG 0.178462 4_2:-56877866 Msa0609530:CDS
GAACAACTTCACCGAACTTT+TGG 0.218023 4_2:+56876358 None:intergenic
AATGAGGAAGAGAAGATATA+AGG 0.234639 4_2:-56870594 Msa0609530:three_prime_UTR
AAAGTTTGGTGAAGTTAAAC+AGG 0.263827 4_2:-56871738 Msa0609530:CDS
GACCGGTGACGAAGAGAATT+TGG 0.272558 4_2:+56872521 None:intergenic
GAGGCTATAGCATTGGTTCT+TGG 0.297566 4_2:+56870801 None:intergenic
TAGTGTTTGATGACAAATTA+GGG 0.309569 4_2:-56870442 Msa0609530:three_prime_UTR
GAGTTGATTGAAGTTGTTAT+TGG 0.311563 4_2:-56874504 Msa0609530:CDS
TCAGGTTACTCTAAGGGATT+TGG 0.331272 4_2:-56871559 Msa0609530:CDS
TCAGGTTACTCTAAGGGATT+TGG 0.331272 4_2:-56876189 Msa0609530:CDS
CGTAGGAGGCTGCCAAGTTA+TGG 0.333019 4_2:+56874398 None:intergenic
TTAGTGTTTGATGACAAATT+AGG 0.334036 4_2:-56870443 Msa0609530:three_prime_UTR
CACTCACCTCCCCTCAGGTT+TGG 0.338964 4_2:+56870401 None:intergenic
TCGAGTCTCAGGTTACTCTA+AGG 0.347313 4_2:-56876196 Msa0609530:CDS
TCGTGTCTCAGGTTACTCTA+AGG 0.355649 4_2:-56871566 Msa0609530:CDS
TTCATTTCACCGTTCTTCTC+TGG 0.361360 4_2:+56870726 None:intergenic
CTGAAAAGTAAAACCCTTGA+TGG 0.361594 4_2:+56878009 None:intergenic
GCTTCTCCGGGTGGTGGTCT+TGG 0.365700 4_2:+56875232 None:intergenic
ATGAGGAAGAGAAGATATAA+GGG 0.365704 4_2:-56870593 Msa0609530:three_prime_UTR
GGGATGGTTCAGTATGTGTC+TGG 0.374916 4_2:+56870778 None:intergenic
CGGTGCCCCGCGGTTTCTGC+CGG 0.374929 4_2:-56872642 Msa0609530:CDS
CGTATTATTTACAGCTTCTC+CGG 0.378906 4_2:+56875219 None:intergenic
GAGAGCTGCAGCTGCGGCGG+CGG 0.386601 4_2:-56877954 Msa0609530:CDS
TTATCCTAATCTTTGTCCAT+TGG 0.396575 4_2:+56870636 None:intergenic
AAGTTCGGTGAAGTTGTTCA+TGG 0.397028 4_2:-56876354 Msa0609530:intron
GAAAAGCCGGCAGAAACCGC+GGG 0.416020 4_2:+56872636 None:intergenic
CGAACCAATGGACAAAGATT+AGG 0.427675 4_2:-56870640 Msa0609530:exon
ATCCATGTCATTGTCTAAAA+GGG 0.429419 4_2:+56870372 None:intergenic
GTAGGAGGCTGCCAAGTTAT+GGG 0.430958 4_2:+56874399 None:intergenic
CTCTCTCCTTCAACCCATCA+AGG 0.434680 4_2:-56878023 Msa0609530:five_prime_UTR
GTTGTTATTGGCCGTGCTAA+AGG 0.449971 4_2:-56874492 Msa0609530:CDS
AGCACCAACCTCTTCGTCTC+TGG 0.450848 4_2:-56877809 Msa0609530:intron
CATAACTTGGCAGCCTCCTA+CGG 0.453048 4_2:-56874397 Msa0609530:CDS
GATGCTGCTAGGGGCATTGA+AGG 0.455789 4_2:-56876141 Msa0609530:CDS
GATGCAGCTAAGGGCATTCA+AGG 0.474539 4_2:-56871511 Msa0609530:CDS
AAAGAGTCGGCAGAAACTGC+GGG 0.478130 4_2:+56877928 None:intergenic
TAAAACCCTTGATGGGTTGA+AGG 0.479055 4_2:+56878017 None:intergenic
AATTGCACTCACCTCCCCTC+AGG 0.481915 4_2:+56870396 None:intergenic
AGAGCAGAAGTAGCTCTAGA+AGG 0.482168 4_2:+56872562 None:intergenic
ATCAAGTTCAGCCCATAACT+TGG 0.484698 4_2:-56874410 Msa0609530:CDS
TACTTTAGAAGATGCTGCTA+GGG 0.485381 4_2:-56876151 Msa0609530:CDS
AAGGCGGCGTTGAAGCGAAC+GGG 0.486768 4_2:+56872581 None:intergenic
TACTTCAGAAGATGCAGCTA+AGG 0.490832 4_2:-56871521 Msa0609530:CDS
GTGGTGGCAGATCGTGTCTC+AGG 0.492116 4_2:-56871577 Msa0609530:CDS
AGGGAAGCATTCCAAAAGTT+CGG 0.494589 4_2:-56876369 Msa0609530:CDS
GGATGATATTGTTGTAATGC+AGG 0.496034 4_2:-56870353 Msa0609530:three_prime_UTR
GATGAGAGCTACAGCGGCAG+CGG 0.497516 4_2:-56872662 Msa0609530:CDS
ATCTGTCGAGCGGAAGGCGG+CGG 0.498886 4_2:+56877842 None:intergenic
TTTACAGCTTCTCCGGGTGG+TGG 0.499800 4_2:+56875226 None:intergenic
CGTCAAAGCAGCCATGGGAT+GGG 0.502131 4_2:+56877979 None:intergenic
CTACTTTAGAAGATGCTGCT+AGG 0.502306 4_2:-56876152 Msa0609530:CDS
TTGGCTTCGTGCAGAAAAGC+CGG 0.502812 4_2:+56872623 None:intergenic
GTGGTAACAGATCGAGTCTC+AGG 0.506975 4_2:-56876207 Msa0609530:CDS
GCCGCCTTCCGCTCGACAGA+TGG 0.507477 4_2:-56877840 Msa0609530:CDS
ATCGGATAAAATAGTAAGCA+TGG 0.508112 4_2:-56874337 Msa0609530:CDS
CTAAAGGACTGCTCCACGCT+TGG 0.509787 4_2:-56874476 Msa0609530:CDS
GATGAGAGCTGCAGCTGCGG+CGG 0.510313 4_2:-56877957 Msa0609530:CDS
TCGTCAAAGCAGCCATGGGA+TGG 0.510354 4_2:+56877978 None:intergenic
ATAACTTGGCAGCCTCCTAC+GGG 0.512108 4_2:-56874396 Msa0609530:CDS
TGGAGAAGAAGCGGTTGGAT+TGG 0.515749 4_2:+56877901 None:intergenic
GTGACGAAGAGAATTTGGTT+GGG 0.517626 4_2:+56872526 None:intergenic
GATGAGAAAGAAGGGAAAGC+TGG 0.519875 4_2:+56877881 None:intergenic
ACCTCGCTCGTCACGAACAC+AGG 0.520908 4_2:+56874311 None:intergenic
AACCAAATTCTCTTCGTCAC+CGG 0.521059 4_2:-56872523 Msa0609530:intron
TCTTCAGGTTCGGAGTGGGA+TGG 0.524520 4_2:+56870762 None:intergenic
GTAAGCTGAGGAAAAGAATG+AGG 0.530254 4_2:-56870610 Msa0609530:three_prime_UTR
GGCGGCGATGATGAGAAAGA+AGG 0.531889 4_2:+56877872 None:intergenic
GCCGATCTCAGCAAGGGTGG+TGG 0.532889 4_2:-56871593 Msa0609530:intron
ACAGCGGCAGCGGTGCCCCG+CGG 0.533814 4_2:-56872652 Msa0609530:CDS
AGTCAAACGTTAATTTGAGA+GGG 0.535560 4_2:-56870501 Msa0609530:three_prime_UTR
TGCTATTTAGCCAAACCTGA+GGG 0.535856 4_2:-56870411 Msa0609530:three_prime_UTR
TGCGAGCATGCTGCCAAGCG+TGG 0.536479 4_2:+56874463 None:intergenic
CGAGTCTCAGGTTACTCTAA+GGG 0.537803 4_2:-56876195 Msa0609530:CDS
GGAAACTGCTGGCAAGAAGA+AGG 0.538907 4_2:-56870700 Msa0609530:CDS
GGTGACGAAGAGAATTTGGT+TGG 0.541116 4_2:+56872525 None:intergenic
CGTGTCTCAGGTTACTCTAA+GGG 0.541129 4_2:-56871565 Msa0609530:CDS
GTCAAAGCAGCCATGGGATG+GGG 0.541430 4_2:+56877980 None:intergenic
TCTCTCCTTCAACCCATCAA+GGG 0.542328 4_2:-56878022 Msa0609530:five_prime_UTR
GAAGAGGTTGGTGCTAGGCT+CGG 0.548156 4_2:+56877817 None:intergenic
GAAGAACGGTGAAATGAAGA+AGG 0.549581 4_2:-56870721 Msa0609530:CDS
GTATTATTTACAGCTTCTCC+GGG 0.550728 4_2:+56875220 None:intergenic
GGATGGTTCAGTATGTGTCT+GGG 0.554245 4_2:+56870779 None:intergenic
AAAACGACGCCAGAGAAGAA+CGG 0.554308 4_2:-56870735 Msa0609530:CDS
TCTCATCGTCAAAGCAGCCA+TGG 0.558291 4_2:+56877973 None:intergenic
TAGTCAAACGTTAATTTGAG+AGG 0.560080 4_2:-56870502 Msa0609530:three_prime_UTR
GCGGAAGGCGGCGGTCCAGA+AGG 0.560349 4_2:+56877851 None:intergenic
GAAGGCGGCGGTCCAGAAGG+CGG 0.560594 4_2:+56877854 None:intergenic
TCGGCCATCTGTCGAGCGGA+AGG 0.561453 4_2:+56877836 None:intergenic
GAAGGCGGCGTTGAAGCGAA+CGG 0.562134 4_2:+56872580 None:intergenic
GACGATGAGAGCTGCAGCTG+CGG 0.562915 4_2:-56877960 Msa0609530:CDS
TCAGCTTAAACCCCATCCCA+TGG 0.564938 4_2:-56877990 Msa0609530:exon
GCCATCTGTCGAGCGGAAGG+CGG 0.576022 4_2:+56877839 None:intergenic
CATTCAAGGCATGGATGGCA+AGG 0.576598 4_2:-56871497 Msa0609530:intron
TGTCTGGGAGGCTATAGCAT+TGG 0.576971 4_2:+56870794 None:intergenic
AAGGGCATTCAAGGCATGGA+TGG 0.580521 4_2:-56871502 Msa0609530:CDS
TGCTAGGGGCATTGAAGGAA+TGG 0.581040 4_2:-56876136 Msa0609530:CDS
CTCATCGTCAAAGCAGCCAT+GGG 0.581556 4_2:+56877974 None:intergenic
TGAAAAGTAAAACCCTTGAT+GGG 0.583024 4_2:+56878010 None:intergenic
GCGGCGATGATGAGAAAGAA+GGG 0.588249 4_2:+56877873 None:intergenic
AGAAAAGCCGGCAGAAACCG+CGG 0.588918 4_2:+56872635 None:intergenic
AAAGCTGGAGAAGAAGCGGT+TGG 0.590957 4_2:+56877896 None:intergenic
AGCTAAGGGCATTCAAGGCA+TGG 0.591683 4_2:-56871506 Msa0609530:CDS
GAGACGAAGAGGTTGGTGCT+AGG 0.593582 4_2:+56877812 None:intergenic
CGAACCAGAGACGAAGAGGT+TGG 0.593995 4_2:+56877805 None:intergenic
ACTTCAGAAGATGCAGCTAA+GGG 0.597665 4_2:-56871520 Msa0609530:CDS
AGGGGCATTGAAGGAATGGA+TGG 0.598515 4_2:-56876132 Msa0609530:CDS
AGCTACTTCTGCTCTAAAGA+CGG 0.598572 4_2:-56872554 Msa0609530:CDS
ACCCGACCATCAACAACCCA+CGG 0.598886 4_2:-56878112 None:intergenic
CACTTTACAAAACCCGTAGG+AGG 0.600085 4_2:+56874384 None:intergenic
CGAGCTCTTGAAATCTCTAG+AGG 0.600917 4_2:-56870557 Msa0609530:three_prime_UTR
GGTAGTTGCAGACGAACCAA+TGG 0.606038 4_2:-56870652 Msa0609530:CDS
TTAGGATAAGAAGTAAGCTG+AGG 0.606307 4_2:-56870622 Msa0609530:exon
GTTGAAGCGAACGGGACAGT+GGG 0.608011 4_2:+56872589 None:intergenic
AAGTTTGGTGAAGTTAAACA+GGG 0.611008 4_2:-56871737 Msa0609530:intron
AGGGAAAGCTGGAGAAGAAG+CGG 0.611069 4_2:+56877892 None:intergenic
TTGGATTGGTGCAAAAGAGT+CGG 0.611688 4_2:+56877915 None:intergenic
TTTGCCGATCTCAGCAAGGG+TGG 0.614124 4_2:-56871596 Msa0609530:intron
TCGGATAAAATAGTAAGCAT+GGG 0.617219 4_2:-56874336 Msa0609530:CDS
GCCTGTGTTCGTGACGAGCG+AGG 0.619774 4_2:-56874312 Msa0609530:intron
AAAAGAGTCGGCAGAAACTG+CGG 0.620147 4_2:+56877927 None:intergenic
CGTTGAAGCGAACGGGACAG+TGG 0.621721 4_2:+56872588 None:intergenic
CGGGACAGTGGGAGAAGACG+CGG 0.622686 4_2:+56872600 None:intergenic
TTATTTACAGCTTCTCCGGG+TGG 0.622983 4_2:+56875223 None:intergenic
CGTGGAGCAGTCCTTTAGCA+CGG 0.628334 4_2:+56874481 None:intergenic
GTCAAACGTTAATTTGAGAG+GGG 0.637544 4_2:-56870500 Msa0609530:three_prime_UTR
CATTGAAGGAATGGATGGCA+AGG 0.640049 4_2:-56876127 Msa0609530:intron
GAAATGAAGAAGGAAACTGC+TGG 0.640066 4_2:-56870711 Msa0609530:CDS
AAGGCGAACCAGAGACGAAG+AGG 0.640180 4_2:+56877801 None:intergenic
TGTAAAGTGCAATATTGATG+TGG 0.640209 4_2:-56874370 Msa0609530:CDS
ATATCTGAACTCGCCAAATG+CGG 0.642153 4_2:+56878061 None:intergenic
TGGTTCAGTATGTGTCTGGG+AGG 0.643151 4_2:+56870782 None:intergenic
AAAAGCCGGCAGAAACCGCG+GGG 0.647049 4_2:+56872637 None:intergenic
TTTGTCAATCTCAGCAAGGG+TGG 0.647632 4_2:-56876226 Msa0609530:intron
TAAGGGAAAATAAACACCGT+GGG 0.652471 4_2:+56878096 None:intergenic
ACAGTGGGAGAAGACGCGGT+TGG 0.653547 4_2:+56872604 None:intergenic
GTACTACAACAGAGACGCTG+AGG 0.653561 4_2:-56876389 Msa0609530:CDS
AGGCTCGGCCATCTGTCGAG+CGG 0.658207 4_2:+56877832 None:intergenic
TTGCACTTTACAAAACCCGT+AGG 0.662932 4_2:+56874381 None:intergenic
GTACTACATCAGAGACGCTG+AGG 0.664662 4_2:-56871772 Msa0609530:CDS
GCAAGACCAAGACCACCACC+CGG 0.665523 4_2:-56875238 Msa0609530:CDS
TTTGATGATGAGAGCTACAG+CGG 0.670929 4_2:-56872668 Msa0609530:CDS
TACTACATCAGAGACGCTGA+GGG 0.671573 4_2:-56871771 Msa0609530:CDS
ATTTAGCCAAACCTGAGGGG+AGG 0.674329 4_2:-56870407 Msa0609530:three_prime_UTR
TACTTCTGCTCTAAAGACGG+CGG 0.680130 4_2:-56872551 Msa0609530:CDS
TACTACAACAGAGACGCTGA+GGG 0.682055 4_2:-56876388 Msa0609530:CDS
CTGCTATTTAGCCAAACCTG+AGG 0.683565 4_2:-56870412 Msa0609530:three_prime_UTR
ACTTTAGAAGATGCTGCTAG+GGG 0.684689 4_2:-56876150 Msa0609530:CDS
GCAGAAGTAGCTCTAGAAGG+CGG 0.685533 4_2:+56872565 None:intergenic
GCTATTTAGCCAAACCTGAG+GGG 0.694973 4_2:-56870410 Msa0609530:three_prime_UTR
AAGAGTCGGCAGAAACTGCG+GGG 0.717765 4_2:+56877929 None:intergenic
ATTTCTGTGAACAAGTACAG+CGG 0.730128 4_2:-56874437 Msa0609530:CDS
TTAAGGGAAAATAAACACCG+TGG 0.753350 4_2:+56878095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATAATAATAATAATA+AGG + chr4_2:56870605-56870624 None:intergenic 0.0%
!!! AATTTATTTATTTTTATTTA+TGG + chr4_2:56871845-56871864 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTATATT+AGG - chr4_2:56874985-56875004 Msa0609530:intron 0.0%
!! ATTATAATTATTATTGTTGT+TGG - chr4_2:56870615-56870634 Msa0609530:three_prime_UTR 10.0%
!!! TTTTTTATAATCCTTAAAAT+CGG + chr4_2:56870782-56870801 None:intergenic 10.0%
!!! AAATTTTTGTAGATAAATTA+AGG + chr4_2:56873286-56873305 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTTGTAGA+AGG + chr4_2:56874863-56874882 None:intergenic 10.0%
!! TAACTATAAAAATTCAAATT+TGG + chr4_2:56874931-56874950 None:intergenic 10.0%
!! TTTACGTTAAAATAAATAAT+TGG - chr4_2:56875089-56875108 Msa0609530:intron 10.0%
!! ATAAAGGTAAAAAATATAAA+AGG - chr4_2:56875216-56875235 Msa0609530:intron 10.0%
!!! TTAAATATGAATTTTTTTTG+AGG - chr4_2:56875477-56875496 Msa0609530:intron 10.0%
!!! ATATGAATTAAATATGTTTT+TGG - chr4_2:56875510-56875529 Msa0609530:intron 10.0%
!!! TTTATTTTTATTTATGGCAT+GGG + chr4_2:56871839-56871858 None:intergenic 15.0%
!!! ATTTATTTTTATTTATGGCA+TGG + chr4_2:56871840-56871859 None:intergenic 15.0%
!! AGTATTATTTATTTAGTCAT+TGG - chr4_2:56873240-56873259 Msa0609530:intron 15.0%
!!! TATGTAAATCTGAAATTATT+TGG + chr4_2:56873479-56873498 None:intergenic 15.0%
!! AAAAAAAAAAGGATTATCTT+AGG - chr4_2:56874438-56874457 Msa0609530:CDS 15.0%
!! TGTTTAAGCAATAAGTAAAT+AGG + chr4_2:56870985-56871004 None:intergenic 20.0%
!! TTTATCAATTTCATCATAGA+AGG - chr4_2:56871213-56871232 Msa0609530:intron 20.0%
!!! TTACAAAACCAATTTGTTAA+AGG + chr4_2:56871241-56871260 None:intergenic 20.0%
!!! ACAAATTGGTTTTGTAAATA+AGG - chr4_2:56871244-56871263 Msa0609530:intron 20.0%
!!! TTATTTTTATTTATGGCATG+GGG + chr4_2:56871838-56871857 None:intergenic 20.0%
!! AGTTTAAATGTTTAAAAGGA+TGG + chr4_2:56872044-56872063 None:intergenic 20.0%
!! GAACAGTTTAAATGTTTAAA+AGG + chr4_2:56872048-56872067 None:intergenic 20.0%
!! CAAAAAACATAAAACCATTA+TGG + chr4_2:56872122-56872141 None:intergenic 20.0%
!! TATTATAAAGACATACAATG+AGG + chr4_2:56872541-56872560 None:intergenic 20.0%
!! TAAATTAAGTTTATCTTAGG+TGG + chr4_2:56872583-56872602 None:intergenic 20.0%
!!! ACATTGTTATTGTATATGTA+TGG - chr4_2:56872956-56872975 Msa0609530:intron 20.0%
!! TGAACATAAATTAATAAGGT+CGG + chr4_2:56873173-56873192 None:intergenic 20.0%
!! CACTAATGTCAAAAAAATAA+AGG + chr4_2:56873440-56873459 None:intergenic 20.0%
!!! CTTTATTTTTTTGACATTAG+TGG - chr4_2:56873438-56873457 Msa0609530:intron 20.0%
!! TAGTAATTTGAGAGATATTA+AGG + chr4_2:56873774-56873793 None:intergenic 20.0%
!!! ATTTGAAATGGATTGTAAAA+TGG - chr4_2:56874203-56874222 Msa0609530:intron 20.0%
!!! TAATTTTAAACACTAGAAAC+TGG + chr4_2:56874719-56874738 None:intergenic 20.0%
!! CTATAAAAATTCAAATTTGG+AGG + chr4_2:56874928-56874947 None:intergenic 20.0%
!! ATATTCTTGTGAGAATATAA+AGG - chr4_2:56875200-56875219 Msa0609530:intron 20.0%
!! ATTAAATGAATGAGAAAACT+TGG - chr4_2:56875270-56875289 Msa0609530:CDS 20.0%
!! AAACGTTCGAATATTAATAT+AGG + chr4_2:56875537-56875556 None:intergenic 20.0%
!! TTCACTTAATTAATTAACTC+TGG + chr4_2:56875592-56875611 None:intergenic 20.0%
!! TGTTAATGTAAACTGTAAAT+TGG - chr4_2:56875893-56875912 Msa0609530:intron 20.0%
!! TTTATGCAATTTGTAACAAA+CGG + chr4_2:56876030-56876049 None:intergenic 20.0%
!!! TGTTTTTTTATGTTCAACAA+AGG - chr4_2:56876057-56876076 Msa0609530:intron 20.0%
!! ACAAAGGAGTAAATATTAAT+CGG - chr4_2:56876143-56876162 Msa0609530:CDS 20.0%
!! TTATGAAAGACAAATTGAAT+TGG + chr4_2:56876518-56876537 None:intergenic 20.0%
!! TCATAATATTCATTTGATTG+TGG - chr4_2:56876532-56876551 Msa0609530:intron 20.0%
!! CATAATATTCATTTGATTGT+GGG - chr4_2:56876533-56876552 Msa0609530:intron 20.0%
!! CAAATGTTAAAATTTACCAA+GGG + chr4_2:56876665-56876684 None:intergenic 20.0%
!! TCAAATGTTAAAATTTACCA+AGG + chr4_2:56876666-56876685 None:intergenic 20.0%
!!! AGAAAGTTTTAACATATTCA+AGG + chr4_2:56877835-56877854 None:intergenic 20.0%
!!! AAATTAACGTTTGACTATTT+TGG + chr4_2:56877859-56877878 None:intergenic 20.0%
! TAATAAGGAAAAGTTGAGAA+GGG + chr4_2:56870590-56870609 None:intergenic 25.0%
! ATAATAAGGAAAAGTTGAGA+AGG + chr4_2:56870591-56870610 None:intergenic 25.0%
! TTTATGTTCTCATTTGATCT+TGG - chr4_2:56870740-56870759 Msa0609530:CDS 25.0%
!! ATAAATTTCTTTTCCCTTTG+TGG - chr4_2:56871053-56871072 Msa0609530:intron 25.0%
! TACTAATATCAAACCACAAA+GGG + chr4_2:56871069-56871088 None:intergenic 25.0%
! TTACTAATATCAAACCACAA+AGG + chr4_2:56871070-56871089 None:intergenic 25.0%
! ACGATATAAGTAGAAATAAG+AGG - chr4_2:56871354-56871373 Msa0609530:intron 25.0%
! CGATATAAGTAGAAATAAGA+GGG - chr4_2:56871355-56871374 Msa0609530:intron 25.0%
! GATATAAGTAGAAATAAGAG+GGG - chr4_2:56871356-56871375 Msa0609530:intron 25.0%
!! TCAAAGAAATATGTTTCTGT+TGG + chr4_2:56871564-56871583 None:intergenic 25.0%
! AATTAAGAGAATTGAATCCT+GGG + chr4_2:56871753-56871772 None:intergenic 25.0%
! AAATTAAGAGAATTGAATCC+TGG + chr4_2:56871754-56871773 None:intergenic 25.0%
! AAAATTGCAAATGACAATTG+AGG + chr4_2:56871804-56871823 None:intergenic 25.0%
!! ACATAAAACCATTATGGTTT+TGG + chr4_2:56872116-56872135 None:intergenic 25.0%
! GTAAGATTTATTAAACCCTT+TGG - chr4_2:56872259-56872278 Msa0609530:intron 25.0%
! CGGTAAATTAAGTTTATCTT+AGG + chr4_2:56872586-56872605 None:intergenic 25.0%
! TCTTAAAGCACAAATTTGTA+TGG - chr4_2:56872681-56872700 Msa0609530:intron 25.0%
! AGATCATTAAATTTGATGTC+AGG + chr4_2:56872782-56872801 None:intergenic 25.0%
! AATACATGATTTACAGATTC+GGG + chr4_2:56872839-56872858 None:intergenic 25.0%
! CAATACATGATTTACAGATT+CGG + chr4_2:56872840-56872859 None:intergenic 25.0%
! CAATATTTGAATAGGAAGTT+TGG + chr4_2:56873043-56873062 None:intergenic 25.0%
! TCAGTAAGCAATATTTGAAT+AGG + chr4_2:56873051-56873070 None:intergenic 25.0%
! CGGATGAACATAAATTAATA+AGG + chr4_2:56873177-56873196 None:intergenic 25.0%
! TTGCAAATTCAAACATAATG+AGG + chr4_2:56873213-56873232 None:intergenic 25.0%
! TATTTATTTAGTCATTGGCA+TGG - chr4_2:56873245-56873264 Msa0609530:intron 25.0%
!!! TTGAATGGTAAGTTTTATCA+TGG + chr4_2:56873522-56873541 None:intergenic 25.0%
! TCACATGGTATTATTTGAAA+TGG - chr4_2:56874191-56874210 Msa0609530:intron 25.0%
!!! TTTTTTTGTAGAAGGAATGA+TGG + chr4_2:56874855-56874874 None:intergenic 25.0%
! GAAACAATATGTATAGTGAA+AGG - chr4_2:56874954-56874973 Msa0609530:intron 25.0%
!!! TTTTGTTTTGAGAGATTGAA+AGG - chr4_2:56875018-56875037 Msa0609530:intron 25.0%
!!! TAAATAATTGGTTTTGTCCA+AGG - chr4_2:56875101-56875120 Msa0609530:intron 25.0%
! TAGGTAACATAATCTGTATA+TGG + chr4_2:56875153-56875172 None:intergenic 25.0%
!! GTTTTTCACACATATACTTA+TGG + chr4_2:56875345-56875364 None:intergenic 25.0%
!!! AATATTCGAACGTTTTGTTA+AGG - chr4_2:56875542-56875561 Msa0609530:intron 25.0%
!!! GTTCTCATTTGATTTGATTT+AGG - chr4_2:56875988-56876007 Msa0609530:intron 25.0%
!! CTCTTTTCTTTTTCTTATCA+TGG + chr4_2:56876190-56876209 None:intergenic 25.0%
! TGTTTAAAGAGGGAAATTAA+GGG + chr4_2:56876394-56876413 None:intergenic 25.0%
!!! TTCATTTTTATTTATGGCAG+GGG + chr4_2:56876462-56876481 None:intergenic 25.0%
!!! CTTCATTTTTATTTATGGCA+GGG + chr4_2:56876463-56876482 None:intergenic 25.0%
!!! GACAGCTTCATTTTTATTTA+TGG + chr4_2:56876468-56876487 None:intergenic 25.0%
! TTAAATGTGTCATAACTTTC+AGG - chr4_2:56876558-56876577 Msa0609530:intron 25.0%
! TAAATGTGTCATAACTTTCA+GGG - chr4_2:56876559-56876578 Msa0609530:intron 25.0%
! AATCATAGCTGAAACTATAA+TGG - chr4_2:56876738-56876757 Msa0609530:intron 25.0%
! TAAACAAAGTTTATCTTAGG+TGG + chr4_2:56877023-56877042 None:intergenic 25.0%
!!! TGTCTATCTTTTAAGATTCA+AGG - chr4_2:56877894-56877913 Msa0609530:CDS 25.0%
!!! GTCTATCTTTTAAGATTCAA+GGG - chr4_2:56877895-56877914 Msa0609530:CDS 25.0%
!! TTAGTGTTTGATGACAAATT+AGG - chr4_2:56877921-56877940 Msa0609530:CDS 25.0%
!! TAGTGTTTGATGACAAATTA+GGG - chr4_2:56877922-56877941 Msa0609530:CDS 25.0%
!!! TGCGGTTTTTTTGTACTTAA+GGG + chr4_2:56870288-56870307 None:intergenic 30.0%
!!! ATGCGGTTTTTTTGTACTTA+AGG + chr4_2:56870289-56870308 None:intergenic 30.0%
AAGTACAAAAAAACCGCATT+TGG - chr4_2:56870290-56870309 Msa0609530:three_prime_UTR 30.0%
TGAAAAGTAAAACCCTTGAT+GGG + chr4_2:56870357-56870376 None:intergenic 30.0%
!! TTATGTTTTTGACCATGTTG+AGG - chr4_2:56870705-56870724 Msa0609530:CDS 30.0%
GGGAAAAGAAATTTATACAC+AGG + chr4_2:56871049-56871068 None:intergenic 30.0%
AAGGATCATTTCATAATCCT+CGG - chr4_2:56871477-56871496 Msa0609530:intron 30.0%
! ATGCAATTTAGAGCAAGTAT+GGG + chr4_2:56871665-56871684 None:intergenic 30.0%
CTTTAATACACTTAATTCCC+AGG - chr4_2:56871733-56871752 Msa0609530:intron 30.0%
AATCTACTCCAAAACCATAA+TGG - chr4_2:56872105-56872124 Msa0609530:intron 30.0%
!!! TTTTTTGTCAATCTCAGCAA+GGG - chr4_2:56872135-56872154 Msa0609530:intron 30.0%
! AGACTTAAGTGTATTTCTGT+CGG - chr4_2:56872304-56872323 Msa0609530:intron 30.0%
! TTGTTATCTTGGATCTGTTT+TGG - chr4_2:56872331-56872350 Msa0609530:intron 30.0%
AAGAACAGTGAATACATTGT+TGG + chr4_2:56872665-56872684 None:intergenic 30.0%
TCATTAAATTTGATGTCAGG+AGG + chr4_2:56872779-56872798 None:intergenic 30.0%
ATACATGATTTACAGATTCG+GGG + chr4_2:56872838-56872857 None:intergenic 30.0%
AGAAAAGCAAAGAACAATCA+TGG + chr4_2:56873018-56873037 None:intergenic 30.0%
! ATGTTCATCCGAAACATTTT+TGG - chr4_2:56873186-56873205 Msa0609530:intron 30.0%
! TGTTCATCCGAAACATTTTT+GGG - chr4_2:56873187-56873206 Msa0609530:intron 30.0%
! TAGATAAATTAAGGCTAGCT+AGG + chr4_2:56873277-56873296 None:intergenic 30.0%
AAAAATTTGCCCGTTGAAAT+GGG - chr4_2:56873298-56873317 Msa0609530:intron 30.0%
ATATTTCTCTTTGATATGCC+TGG - chr4_2:56873353-56873372 Msa0609530:intron 30.0%
CAAATGAACTTTACTTGTCT+AGG - chr4_2:56873400-56873419 Msa0609530:intron 30.0%
TTACAAAACTCACTGTTGAA+TGG + chr4_2:56873537-56873556 None:intergenic 30.0%
ATCACAAAAAACACAGATGA+AGG + chr4_2:56873641-56873660 None:intergenic 30.0%
TGGAGTTGTAAAAAAGAATG+CGG + chr4_2:56873709-56873728 None:intergenic 30.0%
AACTCCATTATGATAGTCAT+AGG - chr4_2:56873722-56873741 Msa0609530:intron 30.0%
ATAGCCTATGACTATCATAA+TGG + chr4_2:56873729-56873748 None:intergenic 30.0%
AGATATTAAGGTAATCCCTT+TGG + chr4_2:56873762-56873781 None:intergenic 30.0%
AAAGAGAATCTTACAGCTTT+AGG - chr4_2:56873826-56873845 Msa0609530:intron 30.0%
! GAGTTGATTGAAGTTGTTAT+TGG - chr4_2:56873860-56873879 Msa0609530:intron 30.0%
TGTAAAGTGCAATATTGATG+TGG - chr4_2:56873994-56874013 Msa0609530:intron 30.0%
ATCGGATAAAATAGTAAGCA+TGG - chr4_2:56874027-56874046 Msa0609530:intron 30.0%
TCGGATAAAATAGTAAGCAT+GGG - chr4_2:56874028-56874047 Msa0609530:intron 30.0%
!! GGCATTTTAATAAGATGACA+TGG + chr4_2:56874100-56874119 None:intergenic 30.0%
AAACAATCCATTGAATACCT+TGG + chr4_2:56874161-56874180 None:intergenic 30.0%
!! AATGGATTGTAAAATGGTTG+TGG - chr4_2:56874209-56874228 Msa0609530:intron 30.0%
GTAACAAGAATTACTCAGAA+TGG + chr4_2:56874260-56874279 None:intergenic 30.0%
!!! ACTGCTTAGTTGTTTTTGAT+AGG - chr4_2:56874281-56874300 Msa0609530:intron 30.0%
TGCTTGCGTCAAAAAAAAAA+AGG - chr4_2:56874427-56874446 Msa0609530:CDS 30.0%
CAAATGAACATTGTATACCT+TGG + chr4_2:56875121-56875140 None:intergenic 30.0%
CATTCATCTTTAGTCTATCT+AGG + chr4_2:56875172-56875191 None:intergenic 30.0%
AAGCTAAAATGTAAAACCCT+GGG + chr4_2:56875662-56875681 None:intergenic 30.0%
TAAGCTAAAATGTAAAACCC+TGG + chr4_2:56875663-56875682 None:intergenic 30.0%
!!! ATTTTAGCTTAAACCCATAG+TGG - chr4_2:56875672-56875691 Msa0609530:intron 30.0%
AGTAATAAGCAATTACTGAC+CGG + chr4_2:56875863-56875882 None:intergenic 30.0%
!!! TCGTATTTCATGTTTTGATC+AGG - chr4_2:56875939-56875958 Msa0609530:intron 30.0%
!! TGATTTAGGTTGTCTTGTTA+CGG - chr4_2:56876002-56876021 Msa0609530:intron 30.0%
AAAGGATCATTTCTTCTTAG+AGG - chr4_2:56876075-56876094 Msa0609530:intron 30.0%
!! ACTGATTTGAGTTTATGACT+TGG - chr4_2:56876110-56876129 Msa0609530:intron 30.0%
TTTCTTATCATGGCAAATGT+TGG + chr4_2:56876180-56876199 None:intergenic 30.0%
TAGTAATCTCTCAAACGATT+TGG - chr4_2:56876214-56876233 Msa0609530:CDS 30.0%
AGTAATCTCTCAAACGATTT+GGG - chr4_2:56876215-56876234 Msa0609530:CDS 30.0%
GTTTAAAGAGGGAAATTAAG+GGG + chr4_2:56876393-56876412 None:intergenic 30.0%
GTGTTTAAAGAGGGAAATTA+AGG + chr4_2:56876395-56876414 None:intergenic 30.0%
ATGAATGGTGTGTTTAAAGA+GGG + chr4_2:56876404-56876423 None:intergenic 30.0%
AATGACAGTTGTAACATGAA+TGG + chr4_2:56876419-56876438 None:intergenic 30.0%
!! GCTTCATTTTTATTTATGGC+AGG + chr4_2:56876464-56876483 None:intergenic 30.0%
!! AGGGAAGCATTTAAAAAGTT+TGG - chr4_2:56876612-56876631 Msa0609530:intron 30.0%
! AAAGTTTGGTGAAGTTAAAC+AGG - chr4_2:56876626-56876645 Msa0609530:intron 30.0%
! AAGTTTGGTGAAGTTAAACA+GGG - chr4_2:56876627-56876646 Msa0609530:intron 30.0%
CGGTAAACAAAGTTTATCTT+AGG + chr4_2:56877026-56877045 None:intergenic 30.0%
AAGAATAGTGAATGCATTGT+TGG + chr4_2:56877105-56877124 None:intergenic 30.0%
TCTTAAAGCACGAATTTGTA+TGG - chr4_2:56877121-56877140 Msa0609530:intron 30.0%
AGATCATTGAATTTCATGTC+AGG + chr4_2:56877222-56877241 None:intergenic 30.0%
ATGCATGATTTACAGATTCA+GGG + chr4_2:56877278-56877297 None:intergenic 30.0%
AATGCATGATTTACAGATTC+AGG + chr4_2:56877279-56877298 None:intergenic 30.0%
!! ACATTGTTGTTGTTTATGTC+TGG - chr4_2:56877382-56877401 Msa0609530:intron 30.0%
CAGCAATAATTGAATCGAAT+CGG + chr4_2:56877477-56877496 None:intergenic 30.0%
! TTCTAAAAACTGCATTGCAA+AGG + chr4_2:56877513-56877532 None:intergenic 30.0%
!! TTTGCAATGCAGTTTTTAGA+AGG - chr4_2:56877512-56877531 Msa0609530:intron 30.0%
GAAAAAGAAGATAACTGCAA+AGG - chr4_2:56877691-56877710 Msa0609530:intron 30.0%
TTATCCTAATCTTTGTCCAT+TGG + chr4_2:56877731-56877750 None:intergenic 30.0%
AATGAGGAAGAGAAGATATA+AGG - chr4_2:56877770-56877789 Msa0609530:intron 30.0%
ATGAGGAAGAGAAGATATAA+GGG - chr4_2:56877771-56877790 Msa0609530:intron 30.0%
! TAGTCAAACGTTAATTTGAG+AGG - chr4_2:56877862-56877881 Msa0609530:CDS 30.0%
! AGTCAAACGTTAATTTGAGA+GGG - chr4_2:56877863-56877882 Msa0609530:CDS 30.0%
!!! TATCTTTTAAGATTCAAGGG+TGG - chr4_2:56877898-56877917 Msa0609530:CDS 30.0%
ATCCATGTCATTGTCTAAAA+GGG + chr4_2:56877995-56878014 None:intergenic 30.0%
TAAGGGAAAATAAACACCGT+GGG + chr4_2:56870271-56870290 None:intergenic 35.0%
TTAAGGGAAAATAAACACCG+TGG + chr4_2:56870272-56870291 None:intergenic 35.0%
CTGAAAAGTAAAACCCTTGA+TGG + chr4_2:56870358-56870377 None:intergenic 35.0%
CATCATATGAAACCTCAACA+TGG + chr4_2:56870720-56870739 None:intergenic 35.0%
CTCATTTGATCTTGGTTGTT+TGG - chr4_2:56870748-56870767 Msa0609530:CDS 35.0%
TGATCTTGGTTGTTTGGTTA+TGG - chr4_2:56870754-56870773 Msa0609530:CDS 35.0%
! TGGTTATGGATCCGATTTTA+AGG - chr4_2:56870768-56870787 Msa0609530:CDS 35.0%
TAAATCTATCTCACTCTCAC+GGG + chr4_2:56871156-56871175 None:intergenic 35.0%
GTAAATCTATCTCACTCTCA+CGG + chr4_2:56871157-56871176 None:intergenic 35.0%
AGAAGGAGCCTTTAACAAAT+TGG - chr4_2:56871230-56871249 Msa0609530:intron 35.0%
GACACAGTCAAGAACTTAAA+AGG + chr4_2:56871389-56871408 None:intergenic 35.0%
!! CTAGAGAAAGCATCTAAGAA+AGG - chr4_2:56871458-56871477 Msa0609530:intron 35.0%
TCAAGTGTCTACTCGAAATA+TGG - chr4_2:56871500-56871519 Msa0609530:CDS 35.0%
CAAGTGTCTACTCGAAATAT+GGG - chr4_2:56871501-56871520 Msa0609530:CDS 35.0%
! CATGCAATTTAGAGCAAGTA+TGG + chr4_2:56871666-56871685 None:intergenic 35.0%
! CATACTTGCTCTAAATTGCA+TGG - chr4_2:56871664-56871683 Msa0609530:intron 35.0%
! AATGACAATTGAGGCATCAA+TGG + chr4_2:56871795-56871814 None:intergenic 35.0%
TTTATTTATGGCATGGGGAA+GGG + chr4_2:56871833-56871852 None:intergenic 35.0%
!! TTTTATTTATGGCATGGGGA+AGG + chr4_2:56871834-56871853 None:intergenic 35.0%
TTGACGTGTCTTAAACTTTC+AGG - chr4_2:56871941-56871960 Msa0609530:intron 35.0%
TGACGTGTCTTAAACTTTCA+GGG - chr4_2:56871942-56871961 Msa0609530:intron 35.0%
!!! GTTTTTTGTCAATCTCAGCA+AGG - chr4_2:56872134-56872153 Msa0609530:intron 35.0%
! TACTTTAGAAGATGCTGCTA+GGG - chr4_2:56872213-56872232 Msa0609530:intron 35.0%
CACTTAAGTCTTCTCGTATA+AGG + chr4_2:56872295-56872314 None:intergenic 35.0%
AAATTTGATGTCAGGAGGAA+GGG + chr4_2:56872774-56872793 None:intergenic 35.0%
TAAATTTGATGTCAGGAGGA+AGG + chr4_2:56872775-56872794 None:intergenic 35.0%
! TTCCCTTGCAATACAGTTTT+TGG - chr4_2:56873077-56873096 Msa0609530:intron 35.0%
CTCCAAAAACTGTATTGCAA+GGG + chr4_2:56873082-56873101 None:intergenic 35.0%
!! CTTGCAATACAGTTTTTGGA+GGG - chr4_2:56873081-56873100 Msa0609530:intron 35.0%
GTATTATTTACAGCTTCTCC+GGG + chr4_2:56873147-56873166 None:intergenic 35.0%
CGTATTATTTACAGCTTCTC+CGG + chr4_2:56873148-56873167 None:intergenic 35.0%
CGGAGAAGCTGTAAATAATA+CGG - chr4_2:56873146-56873165 Msa0609530:intron 35.0%
GGAGAAGCTGTAAATAATAC+GGG - chr4_2:56873147-56873166 Msa0609530:intron 35.0%
AATGAGGCCCAAAAATGTTT+CGG + chr4_2:56873197-56873216 None:intergenic 35.0%
CAAAAATTTGCCCGTTGAAA+TGG - chr4_2:56873297-56873316 Msa0609530:intron 35.0%
AGATTATCCTCCCATTTCAA+CGG + chr4_2:56873311-56873330 None:intergenic 35.0%
GCAGTAACCATTACCAATAA+AGG + chr4_2:56873381-56873400 None:intergenic 35.0%
TGTGATAAAAAGTTACCGAG+TGG - chr4_2:56873570-56873589 Msa0609530:intron 35.0%
TTCAGTAATACTGTACCACT+CGG + chr4_2:56873588-56873607 None:intergenic 35.0%
AAAACACAGATGAAGGAGAA+TGG + chr4_2:56873634-56873653 None:intergenic 35.0%
ATTTCTGTGAACAAGTACAG+CGG - chr4_2:56873927-56873946 Msa0609530:intron 35.0%
AATAAGATGACATGGTCACA+TGG + chr4_2:56874092-56874111 None:intergenic 35.0%
CAAGAATTACTCAGAATGGT+TGG + chr4_2:56874256-56874275 None:intergenic 35.0%
TTTGATAGGCGTCAAACAAA+CGG - chr4_2:56874295-56874314 Msa0609530:intron 35.0%
TCAATGAGATTGCTAAAGAG+AGG + chr4_2:56874472-56874491 None:intergenic 35.0%
!! CGTGTCGATTATTTCTTATG+AGG - chr4_2:56875310-56875329 Msa0609530:intron 35.0%
!!! ATGTTTTGATCAGGTTGTTG+AGG - chr4_2:56875948-56875967 Msa0609530:intron 35.0%
!! GATTTAGGTTGTCTTGTTAC+GGG - chr4_2:56876003-56876022 Msa0609530:intron 35.0%
GTAATCTCTCAAACGATTTG+GGG - chr4_2:56876216-56876235 Msa0609530:intron 35.0%
! TAATCTCTCAAACGATTTGG+GGG - chr4_2:56876217-56876236 Msa0609530:intron 35.0%
!! ACAACTCACTCTAGTCTTTT+GGG + chr4_2:56876286-56876305 None:intergenic 35.0%
GGTTGAGATCAAAATAGCTA+GGG + chr4_2:56876334-56876353 None:intergenic 35.0%
CATGAATGGTGTGTTTAAAG+AGG + chr4_2:56876405-56876424 None:intergenic 35.0%
! AGCTGTCTATTGCATTGATA+AGG - chr4_2:56876481-56876500 Msa0609530:intron 35.0%
TAAATAGCTGAACGAGTGAA+TGG + chr4_2:56876690-56876709 None:intergenic 35.0%
CTGTCAGAATATTGTTGTCT+TGG - chr4_2:56876949-56876968 Msa0609530:intron 35.0%
AGTGTGATGTGTATATGTTG+CGG + chr4_2:56877052-56877071 None:intergenic 35.0%
TTTACTGCAAACTCGAATAG+AGG + chr4_2:56877148-56877167 None:intergenic 35.0%
TCATTGAATTTCATGTCAGG+AGG + chr4_2:56877219-56877238 None:intergenic 35.0%
AGAAAAGCAAAGAACAACCA+TGG + chr4_2:56877444-56877463 None:intergenic 35.0%
!! CGTTTTCTTTTCTTCAGGTT+CGG + chr4_2:56877615-56877634 None:intergenic 35.0%
TTAGGATAAGAAGTAAGCTG+AGG - chr4_2:56877742-56877761 Msa0609530:intron 35.0%
! GTCAAACGTTAATTTGAGAG+GGG - chr4_2:56877864-56877883 Msa0609530:CDS 35.0%
! TTCCCTTTTAGACAATGACA+TGG - chr4_2:56877990-56878009 Msa0609530:exon 35.0%
CATCCATGTCATTGTCTAAA+AGG + chr4_2:56877996-56878015 None:intergenic 35.0%
GGATGATATTGTTGTAATGC+AGG - chr4_2:56878011-56878030 Msa0609530:five_prime_UTR 35.0%
ATATCTGAACTCGCCAAATG+CGG + chr4_2:56870306-56870325 None:intergenic 40.0%
!! TAAAACCCTTGATGGGTTGA+AGG + chr4_2:56870350-56870369 None:intergenic 40.0%
!! TTGGATTGGTGCAAAAGAGT+CGG + chr4_2:56870452-56870471 None:intergenic 40.0%
AGGAAAAGTTGAGAAGGGAA+AGG + chr4_2:56870585-56870604 None:intergenic 40.0%
TCTCACGGGTAGTAAAACTA+AGG + chr4_2:56871142-56871161 None:intergenic 40.0%
CTCAAAAGAGACCTACAGTA+CGG - chr4_2:56871537-56871556 Msa0609530:CDS 40.0%
!! GTTTTCGCTTTTGAGCCAAA+CGG + chr4_2:56871714-56871733 None:intergenic 40.0%
! CAATGGCATGTTGTTTAGAG+AGG + chr4_2:56871778-56871797 None:intergenic 40.0%
!! AGGGAAGCATTCCAAAAGTT+CGG - chr4_2:56871995-56872014 Msa0609530:intron 40.0%
! GAACAACTTCACCGAACTTT+TGG + chr4_2:56872009-56872028 None:intergenic 40.0%
! AAGTTCGGTGAAGTTGTTCA+TGG - chr4_2:56872010-56872029 Msa0609530:intron 40.0%
! TCAGGTTACTCTAAGGGATT+TGG - chr4_2:56872175-56872194 Msa0609530:intron 40.0%
! CTACTTTAGAAGATGCTGCT+AGG - chr4_2:56872212-56872231 Msa0609530:intron 40.0%
! ACTTTAGAAGATGCTGCTAG+GGG - chr4_2:56872214-56872233 Msa0609530:intron 40.0%
CTGTCGGAACATTGTTATCT+TGG - chr4_2:56872320-56872339 Msa0609530:intron 40.0%
ATTTCACTTGTGTGTCATCG+TGG - chr4_2:56872365-56872384 Msa0609530:intron 40.0%
ACAATGTGACACACGGATTT+CGG - chr4_2:56872416-56872435 Msa0609530:intron 40.0%
! ATTTCGGTCTTGTGAAAGAG+AGG - chr4_2:56872432-56872451 Msa0609530:intron 40.0%
! TTTCGGTCTTGTGAAAGAGA+GGG - chr4_2:56872433-56872452 Msa0609530:intron 40.0%
AACACTTGTGTGTCACATTG+TGG - chr4_2:56872466-56872485 Msa0609530:intron 40.0%
AGTGTGATGTGTATATGCTG+CGG + chr4_2:56872612-56872631 None:intergenic 40.0%
TTTACTGCAAACTCGAGTAG+AGG + chr4_2:56872708-56872727 None:intergenic 40.0%
AATTTGATGTCAGGAGGAAG+GGG + chr4_2:56872773-56872792 None:intergenic 40.0%
CCTCCAAAAACTGTATTGCA+AGG + chr4_2:56873083-56873102 None:intergenic 40.0%
!! CCTTGCAATACAGTTTTTGG+AGG - chr4_2:56873080-56873099 Msa0609530:intron 40.0%
!! AATACAGTTTTTGGAGGGCT+GGG - chr4_2:56873086-56873105 Msa0609530:intron 40.0%
GATTATCCTCCCATTTCAAC+GGG + chr4_2:56873310-56873329 None:intergenic 40.0%
GATATGCCTGGAACCTTTAT+TGG - chr4_2:56873365-56873384 Msa0609530:intron 40.0%
CCATTACCAATAAAGGTTCC+AGG + chr4_2:56873374-56873393 None:intergenic 40.0%
CCTGGAACCTTTATTGGTAA+TGG - chr4_2:56873371-56873390 Msa0609530:intron 40.0%
AGATTAAGCATGAGCTTGTC+CGG - chr4_2:56873683-56873702 Msa0609530:intron 40.0%
GTTGTAAAAAAGAATGCGGC+CGG + chr4_2:56873705-56873724 None:intergenic 40.0%
GCTATTCTCTTCTGTCCAAA+GGG - chr4_2:56873744-56873763 Msa0609530:intron 40.0%
!! GAGAATCTTACAGCTTTAGG+AGG - chr4_2:56873829-56873848 Msa0609530:intron 40.0%
ATCAAGTTCAGCCCATAACT+TGG - chr4_2:56873954-56873973 Msa0609530:intron 40.0%
TTGCACTTTACAAAACCCGT+AGG + chr4_2:56873986-56874005 None:intergenic 40.0%
! TGATGTGGCAGTTTTTGCAT+CGG - chr4_2:56874009-56874028 Msa0609530:intron 40.0%
AAATGCCACAATGACACTAG+CGG - chr4_2:56874113-56874132 Msa0609530:intron 40.0%
! GCTTGTACCAAGGTATTCAA+TGG - chr4_2:56874151-56874170 Msa0609530:intron 40.0%
TGTTTCGTTGCGTTATCACA+TGG - chr4_2:56874176-56874195 Msa0609530:intron 40.0%
AACACTCATGCACTTGTAAG+AGG - chr4_2:56874319-56874338 Msa0609530:CDS 40.0%
! AAACATACTGCGAGAAGCAT+GGG + chr4_2:56874353-56874372 None:intergenic 40.0%
CTCATCATCAAAGCCACTAT+GGG + chr4_2:56875688-56875707 None:intergenic 40.0%
TCTCATCATCAAAGCCACTA+TGG + chr4_2:56875689-56875708 None:intergenic 40.0%
!! TTTGATGATGAGAGCTACAG+CGG - chr4_2:56875696-56875715 Msa0609530:intron 40.0%
!! AGCTACTTCTGCTCTAAAGA+CGG - chr4_2:56875810-56875829 Msa0609530:intron 40.0%
GTGACGAAGAGAATTTGGTT+GGG + chr4_2:56875841-56875860 None:intergenic 40.0%
AACCAAATTCTCTTCGTCAC+CGG - chr4_2:56875841-56875860 Msa0609530:intron 40.0%
ACTTGGTTCAATCTCGACAA+AGG - chr4_2:56876127-56876146 Msa0609530:intron 40.0%
!! AGCTCAACTGGTTTGAGATA+AGG - chr4_2:56876246-56876265 Msa0609530:intron 40.0%
!! GCTCAACTGGTTTGAGATAA+GGG - chr4_2:56876247-56876266 Msa0609530:intron 40.0%
!! CACAACTCACTCTAGTCTTT+TGG + chr4_2:56876287-56876306 None:intergenic 40.0%
GGGTTGAGATCAAAATAGCT+AGG + chr4_2:56876335-56876354 None:intergenic 40.0%
ATCTCAACCCACAATTTGCA+TGG - chr4_2:56876345-56876364 Msa0609530:intron 40.0%
AAATTAAGGGGAACGCTGTT+TGG + chr4_2:56876381-56876400 None:intergenic 40.0%
TTTATTTATGGCAGGGGAAG+AGG + chr4_2:56876456-56876475 None:intergenic 40.0%
! TCAGGTTACTCTAAGGGATT+TGG - chr4_2:56872175-56872194 Msa0609530:intron 40.0%
TACTTCAGAAGATGCAGCTA+AGG - chr4_2:56876843-56876862 Msa0609530:intron 40.0%
ACTTCAGAAGATGCAGCTAA+GGG - chr4_2:56876844-56876863 Msa0609530:intron 40.0%
CAGTATTGTGTTACATGTGC+AGG + chr4_2:56876919-56876938 None:intergenic 40.0%
ATGTGTATATGTTGCGGTGT+CGG + chr4_2:56877046-56877065 None:intergenic 40.0%
AATTTCATGTCAGGAGGAAG+GGG + chr4_2:56877213-56877232 None:intergenic 40.0%
GAATTTCATGTCAGGAGGAA+GGG + chr4_2:56877214-56877233 None:intergenic 40.0%
TGAATTTCATGTCAGGAGGA+AGG + chr4_2:56877215-56877234 None:intergenic 40.0%
!! CATCTACAAAGTTGATGCCA+TGG - chr4_2:56877424-56877443 Msa0609530:intron 40.0%
!! CAATGCAGTTTTTAGAAGGC+TGG - chr4_2:56877516-56877535 Msa0609530:intron 40.0%
TTCATTTCACCGTTCTTCTC+TGG + chr4_2:56877641-56877660 None:intergenic 40.0%
GAAGAACGGTGAAATGAAGA+AGG - chr4_2:56877643-56877662 Msa0609530:intron 40.0%
GAAATGAAGAAGGAAACTGC+TGG - chr4_2:56877653-56877672 Msa0609530:intron 40.0%
CGAACCAATGGACAAAGATT+AGG - chr4_2:56877724-56877743 Msa0609530:intron 40.0%
GTAAGCTGAGGAAAAGAATG+AGG - chr4_2:56877754-56877773 Msa0609530:intron 40.0%
! TGCTATTTAGCCAAACCTGA+GGG - chr4_2:56877953-56877972 Msa0609530:CDS 40.0%
TCTCTCCTTCAACCCATCAA+GGG - chr4_2:56870342-56870361 Msa0609530:three_prime_UTR 45.0%
AAAAGAGTCGGCAGAAACTG+CGG + chr4_2:56870440-56870459 None:intergenic 45.0%
GATGAGAAAGAAGGGAAAGC+TGG + chr4_2:56870486-56870505 None:intergenic 45.0%
TTTCTGTTGGACCGTACTGT+AGG + chr4_2:56871551-56871570 None:intergenic 45.0%
!! TTCAAAGCACTGTGACCGTT+TGG - chr4_2:56871696-56871715 Msa0609530:intron 45.0%
TACTACAACAGAGACGCTGA+GGG - chr4_2:56871976-56871995 Msa0609530:intron 45.0%
TTTGTCAATCTCAGCAAGGG+TGG - chr4_2:56872138-56872157 Msa0609530:intron 45.0%
TCGAGTCTCAGGTTACTCTA+AGG - chr4_2:56872168-56872187 Msa0609530:intron 45.0%
CGAGTCTCAGGTTACTCTAA+GGG - chr4_2:56872169-56872188 Msa0609530:intron 45.0%
CATTGAAGGAATGGATGGCA+AGG - chr4_2:56872237-56872256 Msa0609530:intron 45.0%
TTCTCGTATAAGGTGCAGGA+AGG + chr4_2:56872285-56872304 None:intergenic 45.0%
AGTCTTCTCGTATAAGGTGC+AGG + chr4_2:56872289-56872308 None:intergenic 45.0%
GAAATCCGTGTGTCACATTG+TGG + chr4_2:56872417-56872436 None:intergenic 45.0%
CTTGTGTGTCACATTGTGGT+TGG - chr4_2:56872470-56872489 Msa0609530:intron 45.0%
! ATTGTGGTGGGAATGTCACA+TGG + chr4_2:56872502-56872521 None:intergenic 45.0%
CACTTGTGTGACATTGTGGT+GGG + chr4_2:56872514-56872533 None:intergenic 45.0%
CACCACAATGTCACACAAGT+GGG - chr4_2:56872513-56872532 Msa0609530:intron 45.0%
ATCCCACTTGTGTGACATTG+TGG + chr4_2:56872518-56872537 None:intergenic 45.0%
ATGTGTATATGCTGCGGTGT+CGG + chr4_2:56872606-56872625 None:intergenic 45.0%
!! CAATACAGTTTTTGGAGGGC+TGG - chr4_2:56873085-56873104 Msa0609530:intron 45.0%
TTATTTACAGCTTCTCCGGG+TGG + chr4_2:56873144-56873163 None:intergenic 45.0%
AATTTGCCCGTTGAAATGGG+AGG - chr4_2:56873301-56873320 Msa0609530:intron 45.0%
GGCTATTCTCTTCTGTCCAA+AGG - chr4_2:56873743-56873762 Msa0609530:intron 45.0%
!! TACTTTTTGCGATGACGACG+TGG - chr4_2:56873792-56873811 Msa0609530:intron 45.0%
! GTTGTTATTGGCCGTGCTAA+AGG - chr4_2:56873872-56873891 Msa0609530:intron 45.0%
CACTTTACAAAACCCGTAGG+AGG + chr4_2:56873983-56874002 None:intergenic 45.0%
CAAACATACTGCGAGAAGCA+TGG + chr4_2:56874354-56874373 None:intergenic 45.0%
CATGCTTCTCGCAGTATGTT+TGG - chr4_2:56874352-56874371 Msa0609530:CDS 45.0%
!! AGAGCAGAAGTAGCTCTAGA+AGG + chr4_2:56875805-56875824 None:intergenic 45.0%
!! TACTTCTGCTCTAAAGACGG+CGG - chr4_2:56875813-56875832 Msa0609530:intron 45.0%
GGTGACGAAGAGAATTTGGT+TGG + chr4_2:56875842-56875861 None:intergenic 45.0%
! TCTCAAACGATTTGGGGGTT+TGG - chr4_2:56876222-56876241 Msa0609530:intron 45.0%
AACCCACAATTTGCATGGTG+TGG - chr4_2:56876350-56876369 Msa0609530:intron 45.0%
CACCACACCATGCAAATTGT+GGG + chr4_2:56876355-56876374 None:intergenic 45.0%
TCACCACACCATGCAAATTG+TGG + chr4_2:56876356-56876375 None:intergenic 45.0%
TACTACATCAGAGACGCTGA+GGG - chr4_2:56876593-56876612 Msa0609530:intron 45.0%
AGGGTATGTTCTTCATCCCT+TGG - chr4_2:56876646-56876665 Msa0609530:intron 45.0%
TCGTGTCTCAGGTTACTCTA+AGG - chr4_2:56876798-56876817 Msa0609530:intron 45.0%
CGTGTCTCAGGTTACTCTAA+GGG - chr4_2:56876799-56876818 Msa0609530:intron 45.0%
ATTGTGTTACATGTGCAGGC+AGG + chr4_2:56876915-56876934 None:intergenic 45.0%
ATTTCATGTCAGGAGGAAGG+GGG + chr4_2:56877212-56877231 None:intergenic 45.0%
!! GAGGCTATAGCATTGGTTCT+TGG + chr4_2:56877566-56877585 None:intergenic 45.0%
GGATGGTTCAGTATGTGTCT+GGG + chr4_2:56877588-56877607 None:intergenic 45.0%
!! CTTTTCTTCAGGTTCGGAGT+GGG + chr4_2:56877609-56877628 None:intergenic 45.0%
!! TCTTTTCTTCAGGTTCGGAG+TGG + chr4_2:56877610-56877629 None:intergenic 45.0%
!! GGCGTCGTTTTCTTTTCTTC+AGG + chr4_2:56877620-56877639 None:intergenic 45.0%
AAAACGACGCCAGAGAAGAA+CGG - chr4_2:56877629-56877648 Msa0609530:intron 45.0%
CGAGCTCTTGAAATCTCTAG+AGG - chr4_2:56877807-56877826 Msa0609530:intron 45.0%
! CTGCTATTTAGCCAAACCTG+AGG - chr4_2:56877952-56877971 Msa0609530:CDS 45.0%
GCTATTTAGCCAAACCTGAG+GGG - chr4_2:56877954-56877973 Msa0609530:CDS 45.0%
!! TCTATATTATATATATTTAA+CGG + chr4_2:56875367-56875386 None:intergenic 5.0%
!!! AATTTAAACTTTTTTTTTTA+AGG - chr4_2:56875415-56875434 Msa0609530:intron 5.0%
CTCTCTCCTTCAACCCATCA+AGG - chr4_2:56870341-56870360 Msa0609530:three_prime_UTR 50.0%
TCAGCTTAAACCCCATCCCA+TGG - chr4_2:56870374-56870393 Msa0609530:three_prime_UTR 50.0%
CTCATCGTCAAAGCAGCCAT+GGG + chr4_2:56870393-56870412 None:intergenic 50.0%
TCTCATCGTCAAAGCAGCCA+TGG + chr4_2:56870394-56870413 None:intergenic 50.0%
AAAGAGTCGGCAGAAACTGC+GGG + chr4_2:56870439-56870458 None:intergenic 50.0%
TGGAGAAGAAGCGGTTGGAT+TGG + chr4_2:56870466-56870485 None:intergenic 50.0%
AAAGCTGGAGAAGAAGCGGT+TGG + chr4_2:56870471-56870490 None:intergenic 50.0%
AGGGAAAGCTGGAGAAGAAG+CGG + chr4_2:56870475-56870494 None:intergenic 50.0%
GCGGCGATGATGAGAAAGAA+GGG + chr4_2:56870494-56870513 None:intergenic 50.0%
TTCGAGTAGACACTTGACCG+AGG + chr4_2:56871497-56871516 None:intergenic 50.0%
ATTTATGGCATGGGGAAGGG+AGG + chr4_2:56871830-56871849 None:intergenic 50.0%
GTACTACAACAGAGACGCTG+AGG - chr4_2:56871975-56871994 Msa0609530:intron 50.0%
GTGGTAACAGATCGAGTCTC+AGG - chr4_2:56872157-56872176 Msa0609530:intron 50.0%
!! TGCTAGGGGCATTGAAGGAA+TGG - chr4_2:56872228-56872247 Msa0609530:intron 50.0%
!! AGGGGCATTGAAGGAATGGA+TGG - chr4_2:56872232-56872251 Msa0609530:intron 50.0%
TAAGGTGCAGGAAGGCCAAA+GGG + chr4_2:56872277-56872296 None:intergenic 50.0%
ATAAGGTGCAGGAAGGCCAA+AGG + chr4_2:56872278-56872297 None:intergenic 50.0%
TCACTTGTGTGTCATCGTGG+TGG - chr4_2:56872368-56872387 Msa0609530:intron 50.0%
CACTTGTGTGTCATCGTGGT+GGG - chr4_2:56872369-56872388 Msa0609530:intron 50.0%
ACTTGTGTGTCATCGTGGTG+GGG - chr4_2:56872370-56872389 Msa0609530:intron 50.0%
CCGTGTGTCACATTGTGGTT+GGG + chr4_2:56872412-56872431 None:intergenic 50.0%
CCCAACCACAATGTGACACA+CGG - chr4_2:56872409-56872428 Msa0609530:intron 50.0%
TCCGTGTGTCACATTGTGGT+TGG + chr4_2:56872413-56872432 None:intergenic 50.0%
CCACTTGTGTGACATTGTGG+TGG + chr4_2:56872515-56872534 None:intergenic 50.0%
CCACCACAATGTCACACAAG+TGG - chr4_2:56872512-56872531 Msa0609530:intron 50.0%
GTAGGAGGCTGCCAAGTTAT+GGG + chr4_2:56873968-56873987 None:intergenic 50.0%
CATAACTTGGCAGCCTCCTA+CGG - chr4_2:56873967-56873986 Msa0609530:intron 50.0%
ATAACTTGGCAGCCTCCTAC+GGG - chr4_2:56873968-56873987 Msa0609530:intron 50.0%
! ACCTTCCGCTAGTGTCATTG+TGG + chr4_2:56874121-56874140 None:intergenic 50.0%
ACTAGCGGAAGGTGAAGCTT+GGG - chr4_2:56874128-56874147 Msa0609530:intron 50.0%
TCTCGTCTTTCTTCTCACCC+AGG - chr4_2:56875642-56875661 Msa0609530:intron 50.0%
CTCGTCTTTCTTCTCACCCA+GGG - chr4_2:56875643-56875662 Msa0609530:intron 50.0%
TTGGCTTCGTGCAGAAAAGC+CGG + chr4_2:56875744-56875763 None:intergenic 50.0%
!! GCAGAAGTAGCTCTAGAAGG+CGG + chr4_2:56875802-56875821 None:intergenic 50.0%
GACCGGTGACGAAGAGAATT+TGG + chr4_2:56875846-56875865 None:intergenic 50.0%
GTACTACATCAGAGACGCTG+AGG - chr4_2:56876592-56876611 Msa0609530:intron 50.0%
!! GATGCAGCTAAGGGCATTCA+AGG - chr4_2:56876853-56876872 Msa0609530:intron 50.0%
!! AGCTAAGGGCATTCAAGGCA+TGG - chr4_2:56876858-56876877 Msa0609530:intron 50.0%
!! AAGGGCATTCAAGGCATGGA+TGG - chr4_2:56876862-56876881 Msa0609530:intron 50.0%
CATTCAAGGCATGGATGGCA+AGG - chr4_2:56876867-56876886 Msa0609530:intron 50.0%
ACATGTGCAGGCAGGCTAAA+GGG + chr4_2:56876907-56876926 None:intergenic 50.0%
TACATGTGCAGGCAGGCTAA+AGG + chr4_2:56876908-56876927 None:intergenic 50.0%
TTTCATGTCAGGAGGAAGGG+GGG + chr4_2:56877211-56877230 None:intergenic 50.0%
TGTCTGGGAGGCTATAGCAT+TGG + chr4_2:56877573-56877592 None:intergenic 50.0%
TGGTTCAGTATGTGTCTGGG+AGG + chr4_2:56877585-56877604 None:intergenic 50.0%
GGGATGGTTCAGTATGTGTC+TGG + chr4_2:56877589-56877608 None:intergenic 50.0%
GGAAACTGCTGGCAAGAAGA+AGG - chr4_2:56877664-56877683 Msa0609530:intron 50.0%
GGTAGTTGCAGACGAACCAA+TGG - chr4_2:56877712-56877731 Msa0609530:intron 50.0%
ATTTAGCCAAACCTGAGGGG+AGG - chr4_2:56877957-56877976 Msa0609530:CDS 50.0%
GTCAAAGCAGCCATGGGATG+GGG + chr4_2:56870387-56870406 None:intergenic 55.0%
CGTCAAAGCAGCCATGGGAT+GGG + chr4_2:56870388-56870407 None:intergenic 55.0%
TCGTCAAAGCAGCCATGGGA+TGG + chr4_2:56870389-56870408 None:intergenic 55.0%
AAGAGTCGGCAGAAACTGCG+GGG + chr4_2:56870438-56870457 None:intergenic 55.0%
GGCGGCGATGATGAGAAAGA+AGG + chr4_2:56870495-56870514 None:intergenic 55.0%
TTCTCATCATCGCCGCCTTC+TGG - chr4_2:56870498-56870517 Msa0609530:three_prime_UTR 55.0%
!! GAAGAGGTTGGTGCTAGGCT+CGG + chr4_2:56870550-56870569 None:intergenic 55.0%
!! GAGACGAAGAGGTTGGTGCT+AGG + chr4_2:56870555-56870574 None:intergenic 55.0%
AGCACCAACCTCTTCGTCTC+TGG - chr4_2:56870555-56870574 Msa0609530:three_prime_UTR 55.0%
CGAACCAGAGACGAAGAGGT+TGG + chr4_2:56870562-56870581 None:intergenic 55.0%
AAGGCGAACCAGAGACGAAG+AGG + chr4_2:56870566-56870585 None:intergenic 55.0%
!! GATGCTGCTAGGGGCATTGA+AGG - chr4_2:56872223-56872242 Msa0609530:intron 55.0%
! CATCGTGGTGGGGATTTCAC+AGG - chr4_2:56872380-56872399 Msa0609530:intron 55.0%
TTTACAGCTTCTCCGGGTGG+TGG + chr4_2:56873141-56873160 None:intergenic 55.0%
CGATGACGACGTGGAGTCTT+TGG - chr4_2:56873801-56873820 Msa0609530:intron 55.0%
CGTGGAGCAGTCCTTTAGCA+CGG + chr4_2:56873886-56873905 None:intergenic 55.0%
CTAAAGGACTGCTCCACGCT+TGG - chr4_2:56873888-56873907 Msa0609530:intron 55.0%
CGTAGGAGGCTGCCAAGTTA+TGG + chr4_2:56873969-56873988 None:intergenic 55.0%
GCCACAATGACACTAGCGGA+AGG - chr4_2:56874117-56874136 Msa0609530:intron 55.0%
CACTAGCGGAAGGTGAAGCT+TGG - chr4_2:56874127-56874146 Msa0609530:intron 55.0%
CTAGCGGAAGGTGAAGCTTG+GGG - chr4_2:56874129-56874148 Msa0609530:intron 55.0%
GAAGCTTGGGGCTTGTACCA+AGG - chr4_2:56874141-56874160 Msa0609530:intron 55.0%
AGAAAAGCCGGCAGAAACCG+CGG + chr4_2:56875732-56875751 None:intergenic 55.0%
GTTGAAGCGAACGGGACAGT+GGG + chr4_2:56875778-56875797 None:intergenic 55.0%
! TGGGGGTTTGGTAGCTCAAC+TGG - chr4_2:56876234-56876253 Msa0609530:intron 55.0%
TCCGTTTGCCGATCTCAGCA+AGG - chr4_2:56876764-56876783 Msa0609530:intron 55.0%
CCCTTGCTGAGATCGGCAAA+CGG + chr4_2:56876768-56876787 None:intergenic 55.0%
CCGTTTGCCGATCTCAGCAA+GGG - chr4_2:56876765-56876784 Msa0609530:intron 55.0%
TTTGCCGATCTCAGCAAGGG+TGG - chr4_2:56876768-56876787 Msa0609530:intron 55.0%
TTCATGTCAGGAGGAAGGGG+GGG + chr4_2:56877210-56877229 None:intergenic 55.0%
! TCTTCAGGTTCGGAGTGGGA+TGG + chr4_2:56877605-56877624 None:intergenic 55.0%
AATTGCACTCACCTCCCCTC+AGG + chr4_2:56877971-56877990 None:intergenic 55.0%
GACGATGAGAGCTGCAGCTG+CGG - chr4_2:56870404-56870423 Msa0609530:three_prime_UTR 60.0%
GCAAGACCAAGACCACCACC+CGG - chr4_2:56873126-56873145 Msa0609530:intron 60.0%
ACCTCGCTCGTCACGAACAC+AGG + chr4_2:56874056-56874075 None:intergenic 60.0%
GATGAGAGCTACAGCGGCAG+CGG - chr4_2:56875702-56875721 Msa0609530:intron 60.0%
AAAAGCCGGCAGAAACCGCG+GGG + chr4_2:56875730-56875749 None:intergenic 60.0%
GAAAAGCCGGCAGAAACCGC+GGG + chr4_2:56875731-56875750 None:intergenic 60.0%
ACAGTGGGAGAAGACGCGGT+TGG + chr4_2:56875763-56875782 None:intergenic 60.0%
CGTTGAAGCGAACGGGACAG+TGG + chr4_2:56875779-56875798 None:intergenic 60.0%
! AAGGCGGCGTTGAAGCGAAC+GGG + chr4_2:56875786-56875805 None:intergenic 60.0%
! GAAGGCGGCGTTGAAGCGAA+CGG + chr4_2:56875787-56875806 None:intergenic 60.0%
GCCACCACCCTTGCTGAGAT+CGG + chr4_2:56876775-56876794 None:intergenic 60.0%
GTGGTGGCAGATCGTGTCTC+AGG - chr4_2:56876787-56876806 Msa0609530:intron 60.0%
CACTCACCTCCCCTCAGGTT+TGG + chr4_2:56877966-56877985 None:intergenic 60.0%
GATGAGAGCTGCAGCTGCGG+CGG - chr4_2:56870407-56870426 Msa0609530:three_prime_UTR 65.0%
ATCTGTCGAGCGGAAGGCGG+CGG + chr4_2:56870525-56870544 None:intergenic 65.0%
GCCATCTGTCGAGCGGAAGG+CGG + chr4_2:56870528-56870547 None:intergenic 65.0%
TCGGCCATCTGTCGAGCGGA+AGG + chr4_2:56870531-56870550 None:intergenic 65.0%
AGGCTCGGCCATCTGTCGAG+CGG + chr4_2:56870535-56870554 None:intergenic 65.0%
! GCTTCTCCGGGTGGTGGTCT+TGG + chr4_2:56873135-56873154 None:intergenic 65.0%
TGCGAGCATGCTGCCAAGCG+TGG + chr4_2:56873904-56873923 None:intergenic 65.0%
GCCTGTGTTCGTGACGAGCG+AGG - chr4_2:56874052-56874071 Msa0609530:intron 65.0%
CGGGACAGTGGGAGAAGACG+CGG + chr4_2:56875767-56875786 None:intergenic 65.0%
GCCGATCTCAGCAAGGGTGG+TGG - chr4_2:56876771-56876790 Msa0609530:intron 65.0%
GAAGGCGGCGGTCCAGAAGG+CGG + chr4_2:56870513-56870532 None:intergenic 70.0%
GCCGCCTTCCGCTCGACAGA+TGG - chr4_2:56870524-56870543 Msa0609530:three_prime_UTR 70.0%
GAGAGCTGCAGCTGCGGCGG+CGG - chr4_2:56870410-56870429 Msa0609530:three_prime_UTR 75.0%
GCGGAAGGCGGCGGTCCAGA+AGG + chr4_2:56870516-56870535 None:intergenic 75.0%
CGGTGCCCCGCGGTTTCTGC+CGG - chr4_2:56875722-56875741 Msa0609530:intron 75.0%
! ACAGCGGCAGCGGTGCCCCG+CGG - chr4_2:56875712-56875731 Msa0609530:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56870262 56878124 56870262 ID=Msa0609530;Name=Msa0609530
chr4_2 mRNA 56870262 56878124 56870262 ID=Msa0609530-mRNA-1;Parent=Msa0609530;Name=Msa0609530-mRNA-1;_AED=0.15;_eAED=0.15;_QI=131|0.75|0.66|1|1|0.88|9|379|405
chr4_2 exon 56870262 56870862 56870262 ID=Msa0609530-mRNA-1:exon:14759;Parent=Msa0609530-mRNA-1
chr4_2 exon 56871498 56871604 56871498 ID=Msa0609530-mRNA-1:exon:14758;Parent=Msa0609530-mRNA-1
chr4_2 exon 56871738 56871806 56871738 ID=Msa0609530-mRNA-1:exon:14757;Parent=Msa0609530-mRNA-1
chr4_2 exon 56872524 56872694 56872524 ID=Msa0609530-mRNA-1:exon:14756;Parent=Msa0609530-mRNA-1
chr4_2 exon 56874313 56874538 56874313 ID=Msa0609530-mRNA-1:exon:14755;Parent=Msa0609530-mRNA-1
chr4_2 exon 56875231 56875293 56875231 ID=Msa0609530-mRNA-1:exon:14754;Parent=Msa0609530-mRNA-1
chr4_2 exon 56876128 56876234 56876128 ID=Msa0609530-mRNA-1:exon:14753;Parent=Msa0609530-mRNA-1
chr4_2 exon 56876355 56876423 56876355 ID=Msa0609530-mRNA-1:exon:14752;Parent=Msa0609530-mRNA-1
chr4_2 exon 56877810 56878124 56877810 ID=Msa0609530-mRNA-1:exon:14751;Parent=Msa0609530-mRNA-1
chr4_2 five_prime_UTR 56877994 56878124 56877994 ID=Msa0609530-mRNA-1:five_prime_utr;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56877810 56877993 56877810 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56876355 56876423 56876355 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56876128 56876234 56876128 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56875231 56875293 56875231 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56874313 56874538 56874313 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56872524 56872694 56872524 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56871738 56871806 56871738 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56871498 56871604 56871498 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 CDS 56870641 56870862 56870641 ID=Msa0609530-mRNA-1:cds;Parent=Msa0609530-mRNA-1
chr4_2 three_prime_UTR 56870262 56870640 56870262 ID=Msa0609530-mRNA-1:three_prime_utr;Parent=Msa0609530-mRNA-1
Gene Sequence

>Msa0609530

ATGGCTGCTTTGACGATGAGAGCTGCAGCTGCGGCGGCGGTGCCCCGCAGTTTCTGCCGACTCTTTTGCACCAATCCAACCGCTTCTTCTCCAGCTTTCCCTTCTTTCTCATCATCGCCGCCTTCTGGACCGCCGCCTTCCGCTCGACAGATGGCCGAGCCTAGCACCAACCTCTTCGTCTCTGGGCTTAGTAAACGTACTACAACAGAGACGCTGAGGGAAGCATTCCAAAAGTTCGGTGAAGTTGTTCATGCAAGGGTGGTAACAGATCGAGTCTCAGGTTACTCTAAGGGATTTGGTTTCGTGAAATATGCTACTTTAGAAGATGCTGCTAGGGGCATTGAAGGAATGGATGGCAAGTTTTTGGAGGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCCGGAGAAGCTGAGGACAAGAGAGAGTTGATTGAAGTTGTTATTGGCCGTGCTAAAGGACTGCTCCACGCTTGGCAGCATGCTCGCAATAATTTCTGTGAACAAGTACAGCGGCAACATCAAGTTCAGCCCATAACTTGGCAGCCTCCTACGGGTTTTGTAAAGTGCAATATTGATGTGGCAGTTTTTGCATCGGATAAAATAGTAAGCATGGGAGCCTGTGTTCGTGACGAGCGAGTGGCTTTGATGATGAGAGCTACAGCGGCAGCGGTGCCCCGCGGTTTCTGCCGGCTTTTCTGCACGAAGCCAACCGCGTCTTCTCCCACTGTCCCGTTCGCTTCAACGCCGCCTTCTAGAGCTACTTCTGCTCTAAAGACGGCGGAGCCCAACCAAATTCTCTTCGTCACCGGGCTTAACAAACGTACTACATCAGAGACGCTGAGGGAAGCATTTAAAAAGTTTGGTGAAGTTAAACAGGCAAGGGTGGTGGCAGATCGTGTCTCAGGTTACTCTAAGGGATTTGGTTACGTGAAATATGCTACTTCAGAAGATGCAGCTAAGGGCATTCAAGGCATGGATGGCAAGTTTTTAGAAGGCTGGATTGTATTTGCAGAGTATGCAAGACCAAGAACCAATGCTATAGCCTCCCAGACACATACTGAACCATCCCACTCCGAACCTGAAGAAAAGAAAACGACGCCAGAGAAGAACGGTGAAATGAAGAAGGAAACTGCTGGCAAGAAGAAGGACAAGAAAAAGAAGATAACTGCAAAGGTAGTTGCAGACGAACCAATGGACAAAGATTAG
Protein sequence

>Msa0609530

MAALTMRAAAAAAVPRSFCRLFCTNPTASSPAFPSFSSSPPSGPPPSARQMAEPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAARGIEGMDGKFLEGWVIFAEYARPRPPPGEAEDKRELIEVVIGRAKGLLHAWQHARNNFCEQVQRQHQVQPITWQPPTGFVKCNIDVAVFASDKIVSMGACVRDERVALMMRATAAAVPRGFCRLFCTKPTASSPTVPFASTPPSRATSALKTAEPNQILFVTGLNKRTTSETLREAFKKFGEVKQARVVADRVSGYSKGFGYVKYATSEDAAKGIQGMDGKFLEGWIVFAEYARPRTNAIASQTHTEPSHSEPEEKKTTPEKNGEMKKETAGKKKDKKKKITAKVVADEPMDKD*